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Gene WTAPTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
558 supporting clones for gene WTAP back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF374416   .a 1 to 2121 2 to 2110 exact AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 2110/2110
(100 %)
14 diff
(99.4 %id)
AK290854 mammary gland .a 1 to 1564 2 to 1565 Y44H tiling clone,   1565/1565
(100 %)
2 diff
(99.9 %id)
AU121632 mammary gland .a 1 to 853 2 to 853   capped   852/856
(99 %)
13 diff
(98.5 %id)
DA618436   .a 2 to 598 2 to 600   capped   599/599
(100 %)
4 diff
(99.4 %id)
NM_004906.3   .a 3 to 2121 1 to 2119 exact RefSeq, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 2119/2119
(100 %)
0 diff
(100 %id)
CN278216 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 4 to 270 1 to 267       267/267
(100 %)
1 diff
(99.7 %id)
BG718274 testis .a 5 to 589 1 to 585       585/585
(100 %)
5 diff
(99.2 %id)
DA134871 alzheimer cortex .a 8 to 565 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA561768 heart .a 8 to 576 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA284393 corpus callosum .a 11 to 508 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA484996 brain .a 11 to 561 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA609745   .a 11 to 476 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DB044327 testis .a 11 to 564 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB045651 testis .a 11 to 572 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BF697970 brain, primitive neuroectoderm .a 12 to 531 1 to 541       541/814
(66 %)
38 diff
(95.4 %id)
BF175352 blood .a 13 to 204 1 to 196       196/200
(98 %)
18 diff
(91.0 %id)
DA283586 corpus callosum .a 15 to 497 2 to 484   capped   483/492
(98 %)
0 diff
(100 %id)
DA072437 cerebellum .a 18 to 596 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DN994134 brain, whole brain .a 20 to 683 1 to 664       664/674
(98 %)
12 diff
(98.3 %id)
AW248991 lung, small cell carcinoma .a 22 to 656 10 to 644   available from MGC,   635/646
(98 %)
1 diff
(99.9 %id)
BQ888431 ductal carcinoma, cell line, Pancreas .a 22 to 639 1 to 621       621/1002
(61 %)
10 diff
(99.1 %id)
BG767093 melanotic melanoma, high MDR (cell line), skin .a 26 to 662 1 to 639       639/639
(100 %)
8 diff
(98.8 %id)
CN284470 embryonic stem cells, DMSO-treated H9 cellline .a 28 to 656 1 to 629       629/629
(100 %)
3 diff
(99.6 %id)
ES307573 beard hair, skin .a 30 to 256 1 to 220       220/223
(98 %)
10 diff
(95.6 %id)
CX762517 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 36 to 617 1 to 580     Submitted on the opposite strand 580/720
(80 %)
14 diff
(98.1 %id)
ES308745 beard hair, skin .a 40 to 195 1 to 153       153/153
(100 %)
2 diff
(98.7 %id)
DA982873 synovial membrane tissue from rheumatioidarthritis .a 40 to 587 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BF219772 lung, small cell carcinoma .a 41 to 590 1 to 550   available from MGC,   550/550
(100 %)
2 diff
(99.7 %id)
BG480143 choriocarcinoma, placenta .a 44 to 783 1 to 749       749/763
(98 %)
60 diff
(92.2 %id)
BC069192 Placenta, choriocarcinoma .a 45 to 2119 1 to 2076 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 2076/2076
(100 %)
1 diff
(100.0 %id)
CN284475 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 80 to 516 1 to 437       437/437
(100 %)
0 diff
(100 %id)
DA684964   .a 98 to 653 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
CV029882 mixed .a 225 to 684 1 to 460       460/614
(74 %)
3 diff
(99.6 %id)
EL736566 mixed .a 225 to 784 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
TI_1948234837   .a 225 to 1087 129 to 987   fully sequenced,   859/987
(87 %)
10 diff
(99.0 %id)
TI_1948235003   .a 225 to 769 131 to 675   fully sequenced,   545/675
(80 %)
6 diff
(99.2 %id)
TI_1948235172   .a 225 to 769 127 to 671   fully sequenced,   545/671
(81 %)
6 diff
(99.2 %id)
TI_1948235344   .a 225 to 1393 127 to 1282   fully sequenced,   1156/1282
(90 %)
74 diff
(94.3 %id)
AJ276706   .a 233 to 1399 1 to 1167       1167/1167
(100 %)
1 diff
(100.0 %id)
AA310575   .a 271 to 564 1 to 295       295/295
(100 %)
1 diff
(99.7 %id)
BF920995 nervous_tumor .a 340 to 895 14 to 569       556/569
(97 %)
9 diff
(98.5 %id)
BF930039 nervous_tumor .a 352 to 909 25 to 582       558/582
(95 %)
13 diff
(97.8 %id)
BF930054 nervous_tumor .a 354 to 913 27 to 586       560/586
(95 %)
8 diff
(98.7 %id)
AI905831 breast .a 417 to 726 309 to 1       309/322
(95 %)
8 diff
(97.6 %id)
AW382064 head_neck .a 519 to 770 261 to 8       254/269
(94 %)
9 diff
(96.7 %id)
AW840199 leiomios .a 527 to 763 9 to 241       233/241
(96 %)
6 diff
(97.6 %id)
BI047378 stomach .a 531 to 759 231 to 1       231/232
(99 %)
14 diff
(94.0 %id)
BQ364113 stomach .a 536 to 763 137 to 364       228/365
(62 %)
7 diff
(98.1 %id)
AL583911 amygdala .a 556 to 1594 1 to 1040   available from DKFZ,   1040/1040
(100 %)
1 diff
(100.0 %id)
AW371655 breast .a 558 to 774 1 to 216       216/224
(96 %)
9 diff
(96.0 %id)
BF753107 breast_normal .a 596 to 866 269 to 1     Submitted on the opposite strand 271/284
(95 %)
11 diff
(96.2 %id)
BG896779 cartilage .a 688 to 1208 86 to 606       521/538
(96 %)
8 diff
(98.6 %id)
BQ366383 placenta_normal .a 704 to 1099 14 to 413       400/413
(96 %)
6 diff
(98.6 %id)
BQ366936 placenta_normal .a 704 to 1099 14 to 413       400/413
(96 %)
6 diff
(98.6 %id)
TI_1948235004   .a 739 to 1414 805 to 130   fully sequenced,   676/805
(83 %)
0 diff
(100 %id)
TI_1948235173   .a 739 to 1414 802 to 130   fully sequenced,   673/802
(83 %)
2 diff
(99.8 %id)
TI_1948235345   .a 739 to 1414 805 to 130   fully sequenced,   676/805
(83 %)
0 diff
(100 %id)
H90626 liver and spleen .a 761 to 1151 411 to 13     Submitted on the opposite strand 399/418
(95 %)
8 diff
(98.1 %id)
BF336811 colon .a 776 to 1111 484 to 150       335/484
(69 %)
5 diff
(99.0 %id)
AW936415 denis_drash .a 834 to 1388 20 to 575       556/575
(96 %)
6 diff
(99.0 %id)
AW936487 denis_drash .a 845 to 1393 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
AW753139 colon .a 873 to 1416 544 to 1       544/544
(100 %)
9 diff
(98.4 %id)
R98338 liver and spleen .a 895 to 1236 352 to 8     Submitted on the opposite strand 345/380
(90 %)
0 diff
(100 %id)
AW753165 colon .a 908 to 1241 352 to 19       334/352
(94 %)
0 diff
(100 %id)
AW752212 colon .a 910 to 1182 282 to 9       274/282
(97 %)
5 diff
(98.3 %id)
BI089654 cervix .a 913 to 1540 6 to 635       630/758
(83 %)
14 diff
(98.2 %id)
BF915269 uterus_tumor .a 917 to 1217 10 to 310       301/310
(97 %)
6 diff
(98.1 %id)
BE161333 head_neck .a 961 to 1308 353 to 9     Submitted on the opposite strand 345/353
(97 %)
0 diff
(100 %id)
BE161332 head_neck .a 1004 to 1300 313 to 17     Submitted on the opposite strand 297/313
(94 %)
0 diff
(100 %id)
TI_1948234838   .a 1057 to 1419 485 to 123   fully sequenced,   363/485
(74 %)
5 diff
(99.0 %id)
BF807534 colon_ins .a 1059 to 1509 1 to 451       451/452
(99 %)
12 diff
(97.4 %id)
BG924897 cartilage .a 1065 to 1591 86 to 612       527/544
(96 %)
6 diff
(98.9 %id)
DW455577 Liver .a 1221 to 1380 17 to 174       158/174
(90 %)
6 diff
(96.6 %id)
W26318 eye, retina .a 1252 to 1535 12 to 293       282/336
(83 %)
19 diff
(94.4 %id)
BQ326319 colon_normal .a 1255 to 1489 238 to 1       238/238
(100 %)
12 diff
(95.0 %id)
BF352328 head_neck .a 1263 to 1506 244 to 1       244/246
(99 %)
2 diff
(99.2 %id)
AA328059   .a 1269 to 1493 1 to 225       225/225
(100 %)
1 diff
(99.6 %id)
EH326263   .a 1303 to 1390 1 to 87       87/87
(100 %)
2 diff
(97.8 %id)
TI_149273430   .a 1564 to 2121 652 to 96   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 557/986
(56 %)
3 diff
(99.7 %id)
TI_149283072   .a 1564 to 2119 648 to 93   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 556/799
(69 %)
6 diff
(99.3 %id)
BU675804 lung, Primary Lung Epithelial Cells .a 1564 to 2121 575 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 557/567
(98 %)
3 diff
(99.5 %id)
BM983973 lung, Primary Lung Epithelial Cells .a 1564 to 2119 574 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 556/571
(97 %)
6 diff
(99.0 %id)
BU608661 Human Lung Epithelial cells, lung .a 1564 to 2121 574 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 556/565
(98 %)
2 diff
(99.7 %id)
BU607929 Human Lung Epithelial cells, lung .a 1564 to 2119 574 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 556/568
(97 %)
5 diff
(99.2 %id)
TI_151771132   .a 1566 to 2121 114 to 673   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 560/568
(98 %)
6 diff
(99.0 %id)
BM706948 eye, optic nerve .a 1567 to 2122 38 to 593       556/593
(93 %)
6 diff
(99.0 %id)
TI_149280788   .a 1569 to 2121 644 to 92   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 553/801
(69 %)
6 diff
(99.3 %id)
BM969952 lung, Primary Lung Epithelial Cells .a 1569 to 2121 571 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 553/592
(93 %)
6 diff
(99.0 %id)
TI_159720152   .a 1570 to 2121 684 to 132   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 553/959
(57 %)
23 diff
(97.7 %id)
CA450319 Human Lung Epithelial cells, lung .a 1570 to 2121 570 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 552/582
(94 %)
2 diff
(99.7 %id)
BQ008004 Chondrosarcoma, Left Pelvis .a 1571 to 2121 569 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 551/554
(99 %)
0 diff
(100 %id)
CA450530 Human Lung Epithelial cells, lung .a 1571 to 2121 569 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 551/584
(94 %)
0 diff
(100 %id)
AW589601 ovary, papillary serous carcinoma .a 1572 to 1929 49 to 415     Submitted on the opposite strand 367/416
(88 %)
14 diff
(96.7 %id)
BG272479 head/neck, nasopharyngeal carcinoma .a 1572 to 1800 41 to 269     Submitted on the opposite strand 229/294
(77 %)
1 diff
(99.7 %id)
AI700956 carcinoid, lung .a 1574 to 1987 1 to 414     Submitted on the opposite strand 414/414
(100 %)
8 diff
(98.1 %id)
TI_149282826   .a 1574 to 2123 664 to 115       550/759
(72 %)
0 diff
(100 %id)
TI_149275414   .a 1577 to 2121 656 to 113   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 544/671
(81 %)
1 diff
(99.9 %id)
AW014958   .a 1578 to 1973 1 to 396     Submitted on the opposite strand 396/397
(99 %)
2 diff
(99.5 %id)
CB852157 Human Lung Epithelial cells, lung .a 1578 to 1703 166 to 41       126/166
(75 %)
0 diff
(100 %id)
N49763 multiple sclerosis lesions .a 1581 to 2044 1 to 470     Submitted on the opposite strand 470/470
(100 %)
19 diff
(96.0 %id)
AV739282 cord Blood .a 1584 to 2008 446 to 33     Submitted on the opposite strand 414/446
(92 %)
27 diff
(94.0 %id)
AI299138 carcinoid, lung .a 1584 to 1877 1 to 294     Submitted on the opposite strand 294/294
(100 %)
3 diff
(99.0 %id)
BG058229 head/neck, nasopharyngeal carcinoma .a 1585 to 1800 271 to 56     Submitted on the opposite strand 216/271
(79 %)
0 diff
(100 %id)
AU147416 mammary gland .a 1585 to 2121 534 to 1       534/534
(100 %)
5 diff
(99.1 %id)
AA320733 adipose tissue, white .a 1588 to 1870 1 to 285       285/288
(98 %)
6 diff
(98.0 %id)
AI206604   .a 1588 to 1951 1 to 364     Submitted on the opposite strand 364/364
(100 %)
1 diff
(99.8 %id)
CN285776 embryonic stem cells, cell lines H1, H7, andH9 .a 1589 to 1919 1 to 331       331/331
(100 %)
3 diff
(99.1 %id)
AI051920 parathyroid gland, parathyroid tumor .a 1589 to 2010 1 to 421     Submitted on the opposite strand 421/421
(100 %)
1 diff
(99.8 %id)
AI027885 parathyroid gland, parathyroid tumor .a 1589 to 2072 1 to 483     Submitted on the opposite strand 483/483
(100 %)
3 diff
(99.4 %id)
AI023088 parathyroid gland, parathyroid tumor .a 1589 to 2061 1 to 472     Submitted on the opposite strand 472/472
(100 %)
1 diff
(99.8 %id)
AI268580 carcinoid, lung .a 1589 to 1928 1 to 340     Submitted on the opposite strand 340/340
(100 %)
1 diff
(99.8 %id)
AI184172   .a 1591 to 2052 1 to 462     Submitted on the opposite strand 462/462
(100 %)
0 diff
(100 %id)
AI298081 carcinoid, lung .a 1592 to 1980 1 to 389     Submitted on the opposite strand 389/389
(100 %)
0 diff
(100 %id)
AI457444 carcinoid, lung .a 1592 to 2081 1 to 490     Submitted on the opposite strand 490/490
(100 %)
0 diff
(100 %id)
AI680710 carcinoid, lung .a 1592 to 2034 1 to 443     Submitted on the opposite strand 443/443
(100 %)
1 diff
(99.8 %id)
BE220592 carcinoid, lung .a 1592 to 2057 1 to 466     Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
BE464729 carcinoid, lung .a 1592 to 2123 1 to 532   tiling clone, Submitted on the opposite strand 532/546
(97 %)
1 diff
(99.9 %id)
BE467888 carcinoid, lung .a 1592 to 2053 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BE467964 carcinoid, lung .a 1592 to 2055 1 to 464     Submitted on the opposite strand 464/464
(100 %)
0 diff
(100 %id)
BE550208 carcinoid, lung .a 1592 to 2063 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
BF938968 carcinoid, lung .a 1592 to 2024 1 to 433     Submitted on the opposite strand 433/433
(100 %)
0 diff
(100 %id)
AI302172 2 pooled tumors (clear cell type), Kidney .a 1593 to 2110 1 to 518     Submitted on the opposite strand 518/518
(100 %)
0 diff
(100 %id)
AI458632 carcinoid, lung .a 1593 to 1932 1 to 340     Submitted on the opposite strand 340/340
(100 %)
2 diff
(99.5 %id)
TI_149280982   .a 1593 to 2123 560 to 29       532/701
(75 %)
0 diff
(100 %id)
BE502883 carcinoid, lung .a 1594 to 2053 1 to 460     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
TI_149304352   .a 1594 to 2121 660 to 133   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 528/913
(57 %)
15 diff
(98.4 %id)
AI797177 carcinoid, lung .a 1595 to 2117 1 to 523     Submitted on the opposite strand 523/523
(100 %)
0 diff
(100 %id)
AI768559 Kidney .a 1595 to 2123 1 to 529     Submitted on the opposite strand 529/533
(99 %)
2 diff
(99.7 %id)
AW000945 Kidney .a 1595 to 2040 1 to 446     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
BE326249 carcinoid, lung .a 1595 to 2019 1 to 425     Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
AW964545   .a 1596 to 2123 1 to 530       530/573
(92 %)
7 diff
(98.8 %id)
FN102916 breast carcinoma .a 1596 to 1645 50 to 1     Submitted on the opposite strand 50/52
(96 %)
0 diff
(100 %id)
AI697575 carcinoid, lung .a 1596 to 2049 1 to 453     Submitted on the opposite strand 453/453
(100 %)
3 diff
(99.4 %id)
AI698022 carcinoid, lung .a 1596 to 2042 1 to 447     Submitted on the opposite strand 447/447
(100 %)
0 diff
(100 %id)
AW770952 carcinoid, lung .a 1596 to 2017 1 to 422     Submitted on the opposite strand 422/422
(100 %)
0 diff
(100 %id)
R73112 breast .a 1600 to 1923 8 to 332     Submitted on the opposite strand 325/386
(84 %)
5 diff
(98.8 %id)
FN145603 breast carcinoma .a 1608 to 1699 90 to 1     Submitted on the opposite strand 90/91
(98 %)
2 diff
(97.9 %id)
BU676632 lung, Primary Lung Epithelial Cells .a 1612 to 2121 527 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 509/509
(100 %)
1 diff
(99.9 %id)
BP366325   .a 1626 to 2119 1 to 494   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 494/494
(100 %)
0 diff
(100 %id)
BP366329   .a 1626 to 2119 1 to 494   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 494/494
(100 %)
2 diff
(99.6 %id)
BU785017 Pancreas, Purified pancreatic islet .a 1637 to 2000 1 to 365     Submitted on the opposite strand 365/365
(100 %)
3 diff
(99.2 %id)
CB243866 Human Lung Epithelial cells, lung .a 1640 to 2121 500 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 482/482
(100 %)
0 diff
(100 %id)
R75612 breast .a 1643 to 1914 1 to 272     Submitted on the opposite strand 272/272
(100 %)
0 diff
(100 %id)
AA733119 heart .a 1654 to 2121 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AA412316   .a 1665 to 2054 1 to 390       390/390
(100 %)
0 diff
(100 %id)
FN161197 breast carcinoma .a 1677 to 1782 105 to 1     Submitted on the opposite strand 105/105
(100 %)
1 diff
(99.1 %id)
AI971789 fibrotheoma, ovary .a 1680 to 2123 451 to 8       444/451
(98 %)
0 diff
(100 %id)
AW804213 uterus .a 1683 to 2065 400 to 20       381/403
(94 %)
0 diff
(100 %id)
TI_149282353   .a 1684 to 2121 520 to 84   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 437/1131
(38 %)
1 diff
(100.0 %id)
BM983785 lung, Primary Lung Epithelial Cells .a 1684 to 2121 455 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 437/445
(98 %)
1 diff
(99.8 %id)
AA461140   .a 1689 to 2073 1 to 385       385/385
(100 %)
0 diff
(100 %id)
R73164 breast .a 1695 to 2058 363 to 1     Submitted on the opposite strand 363/363
(100 %)
1 diff
(99.8 %id)
BF754875 colon .a 1701 to 1971 272 to 2     Submitted on the opposite strand 271/272
(99 %)
0 diff
(100 %id)
AW804269 uterus .a 1710 to 1903 1 to 194       194/221
(87 %)
6 diff
(97.3 %id)
R75704 breast .a 1728 to 2058 339 to 1     Submitted on the opposite strand 339/339
(100 %)
9 diff
(97.4 %id)
BE859024 Prostate .a 1732 to 2114 383 to 1       383/383
(100 %)
0 diff
(100 %id)
N52691 multiple sclerosis lesions .a 1738 to 2053 317 to 1     Submitted on the opposite strand 317/324
(97 %)
8 diff
(97.6 %id)
BM769681 stomach .a 1743 to 2119 1 to 377   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 377/377
(100 %)
0 diff
(100 %id)
BM855635 stomach .a 1743 to 2118 1 to 376       376/376
(100 %)
0 diff
(100 %id)
BM069659 Islets of Langerhans, Pancreas .a 1746 to 2123 1 to 378       378/401
(94 %)
2 diff
(99.6 %id)
FN100469 breast carcinoma .a 1747 to 1834 1 to 88       88/89
(98 %)
1 diff
(98.9 %id)
FN056782 breast carcinoma .a 1754 to 1806 53 to 1     Submitted on the opposite strand 53/54
(98 %)
0 diff
(100 %id)
BU634057 cell lines, Chondrosarcoma .a 1772 to 2121 363 to 14   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 350/350
(100 %)
0 diff
(100 %id)
AA810538 germinal center B cell .a 1786 to 2119 358 to 25   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 334/334
(100 %)
0 diff
(100 %id)
FN093668 breast carcinoma .a 1790 to 1838 49 to 1     Submitted on the opposite strand 49/50
(98 %)
0 diff
(100 %id)
AW378386 head_neck .a 1795 to 2064 1 to 269       269/269
(100 %)
6 diff
(97.8 %id)
AW387985 stomach .a 1797 to 2064 1 to 268       268/268
(100 %)
4 diff
(98.6 %id)
GD138694   .a 1797 to 2121 1 to 325   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 325/325
(100 %)
2 diff
(99.4 %id)
AW810477 stomach .a 1798 to 2064 3 to 265       263/265
(99 %)
6 diff
(97.8 %id)
AW609091 stomach .a 1799 to 2064 4 to 266       263/266
(98 %)
6 diff
(97.8 %id)
AW378395 head_neck .a 1800 to 2064 16 to 279       264/279
(94 %)
6 diff
(97.9 %id)
AW387940 stomach .a 1800 to 2064 17 to 281       265/281
(94 %)
6 diff
(97.9 %id)
AW387946 stomach .a 1800 to 2064 18 to 280       263/280
(93 %)
6 diff
(97.9 %id)
AW387981 stomach .a 1800 to 2064 16 to 278       263/278
(94 %)
6 diff
(97.9 %id)
AW387999 stomach .a 1800 to 2064 13 to 276       264/276
(95 %)
6 diff
(97.9 %id)
AW609105 stomach .a 1800 to 2064 5 to 265       261/265
(98 %)
6 diff
(97.8 %id)
AW609109 stomach .a 1800 to 2064 17 to 281       265/281
(94 %)
6 diff
(97.9 %id)
AW809903 stomach .a 1800 to 2064 19 to 282       264/282
(93 %)
6 diff
(97.9 %id)
BQ347603 head_neck .a 1800 to 2065 7 to 273       267/273
(97 %)
6 diff
(97.9 %id)
AW809854 stomach .a 1803 to 2064 1 to 264       264/264
(100 %)
11 diff
(95.9 %id)
AW809977 stomach .a 1803 to 2064 1 to 262       262/262
(100 %)
10 diff
(96.2 %id)
BE842381 stomach .a 1803 to 2064 13 to 270       258/270
(95 %)
6 diff
(97.8 %id)
AW810052 stomach .a 1805 to 2064 1 to 261       261/261
(100 %)
7 diff
(97.4 %id)
GD138810   .a 1805 to 2121 8 to 324   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 317/324
(97 %)
0 diff
(100 %id)
AW388149 stomach .a 1809 to 2064 1 to 256       256/256
(100 %)
8 diff
(96.9 %id)
AW370403 breast .a 1810 to 2050 244 to 1       244/244
(100 %)
5 diff
(98.0 %id)
AW370449 breast .a 1810 to 2069 266 to 7       260/266
(97 %)
0 diff
(100 %id)
AW378362 head_neck .a 1810 to 2064 1 to 255       255/255
(100 %)
2 diff
(99.3 %id)
AW378363 head_neck .a 1810 to 2010 204 to 1       204/204
(100 %)
9 diff
(95.6 %id)
AW378372 head_neck .a 1810 to 1980 174 to 3       172/174
(98 %)
0 diff
(100 %id)
AW378380 head_neck .a 1810 to 2064 1 to 255       255/255
(100 %)
3 diff
(98.9 %id)
AW378402 head_neck .a 1810 to 2028 1 to 219       219/219
(100 %)
5 diff
(97.8 %id)
AW387929 stomach .a 1810 to 2063 1 to 254       254/255
(99 %)
7 diff
(97.3 %id)
AW387932 stomach .a 1810 to 2064 1 to 254       254/254
(100 %)
9 diff
(96.5 %id)
AW387952 stomach .a 1810 to 2079 275 to 8       268/275
(97 %)
0 diff
(100 %id)
AW387983 stomach .a 1810 to 2079 275 to 6       270/275
(98 %)
0 diff
(100 %id)
AW387994 stomach .a 1810 to 2074 264 to 1       264/264
(100 %)
4 diff
(98.5 %id)
AW388128 stomach .a 1810 to 2064 255 to 1       255/255
(100 %)
0 diff
(100 %id)
AW388142 stomach .a 1810 to 2064 1 to 255       255/255
(100 %)
6 diff
(97.7 %id)
AW388144 stomach .a 1810 to 2064 1 to 258       258/258
(100 %)
3 diff
(98.9 %id)
AW388148 stomach .a 1810 to 2064 1 to 256       256/256
(100 %)
6 diff
(97.7 %id)
AW388220 stomach .a 1810 to 2064 256 to 1       256/256
(100 %)
3 diff
(98.9 %id)
AW388240 stomach .a 1810 to 2064 1 to 258       258/258
(100 %)
10 diff
(96.2 %id)
AW388245 stomach .a 1810 to 2069 1 to 267       267/280
(95 %)
22 diff
(92.2 %id)
AW393748 testis .a 1810 to 2052 240 to 1       240/240
(100 %)
8 diff
(96.7 %id)
AW393754 testis .a 1810 to 2065 267 to 11       257/267
(96 %)
0 diff
(100 %id)
AW809859 stomach .a 1810 to 2064 256 to 1       256/256
(100 %)
2 diff
(99.3 %id)
AW809914 stomach .a 1810 to 2079 281 to 13       269/281
(95 %)
0 diff
(100 %id)
AW809917 stomach .a 1810 to 2050 247 to 2       246/247
(99 %)
0 diff
(100 %id)
AW810041 stomach .a 1810 to 2078 279 to 12       268/279
(96 %)
6 diff
(97.9 %id)
AW810117 stomach .a 1810 to 2039 236 to 5       232/236
(98 %)
0 diff
(100 %id)
AW810131 stomach .a 1810 to 2074 264 to 1       264/264
(100 %)
8 diff
(97.0 %id)
AW810136 stomach .a 1810 to 2058 253 to 3       251/253
(99 %)
0 diff
(100 %id)
AW810138 stomach .a 1810 to 2064 257 to 1       257/257
(100 %)
9 diff
(96.5 %id)
AW810543 stomach .a 1810 to 2031 229 to 9       221/229
(96 %)
0 diff
(100 %id)
BE842178 stomach .a 1810 to 2050 242 to 3       240/242
(99 %)
0 diff
(100 %id)
BE842200 stomach .a 1810 to 2064 256 to 1       256/256
(100 %)
3 diff
(98.9 %id)
BE842232 stomach .a 1810 to 2050 241 to 2       240/241
(99 %)
0 diff
(100 %id)
BE842397 stomach .a 1810 to 2069 263 to 4       260/263
(98 %)
0 diff
(100 %id)
BE842403 stomach .a 1810 to 2034 231 to 1       231/231
(100 %)
20 diff
(91.4 %id)
BE842410 stomach .a 1810 to 2068 259 to 1       259/259
(100 %)
2 diff
(99.3 %id)
BQ347602 head_neck .a 1810 to 2069 1 to 260       260/266
(97 %)
5 diff
(98.2 %id)
BQ347975 head_neck .a 1810 to 2064 1 to 255       255/255
(100 %)
4 diff
(98.5 %id)
BQ363299 stomach .a 1810 to 2039 238 to 7       232/238
(97 %)
6 diff
(97.5 %id)
BQ363777 stomach .a 1810 to 2040 235 to 3       233/235
(99 %)
0 diff
(100 %id)
BQ363792 stomach .a 1810 to 1968 178 to 20       159/178
(89 %)
0 diff
(100 %id)
BQ363865 stomach .a 1810 to 1916 1 to 107       107/107
(100 %)
0 diff
(100 %id)
BQ363867 stomach .a 1810 to 2058 249 to 1       249/249
(100 %)
13 diff
(94.8 %id)
AW388236 stomach .a 1811 to 2065 254 to 1       254/255
(99 %)
2 diff
(99.3 %id)
AW609165 stomach .a 1811 to 2076 263 to 1       263/264
(99 %)
15 diff
(94.4 %id)
BE842328 stomach .a 1813 to 2064 1 to 255       255/255
(100 %)
14 diff
(94.6 %id)
BE842198 stomach .a 1816 to 2064 1 to 248       248/248
(100 %)
3 diff
(98.8 %id)
BQ363926 stomach .a 1816 to 2064 1 to 247       247/247
(100 %)
3 diff
(98.8 %id)
BE842208 stomach .a 1823 to 2064 1 to 242       242/242
(100 %)
3 diff
(98.8 %id)
AW387953 stomach .a 1825 to 2064 9 to 248       240/248
(96 %)
6 diff
(97.6 %id)
AW810594 stomach .a 1825 to 2067 1 to 243       243/257
(94 %)
8 diff
(96.9 %id)
AW748432 breast .a 1844 to 2064 1 to 222       222/222
(100 %)
6 diff
(97.3 %id)
AW581955 stomach .a 1850 to 2064 1 to 220       220/220
(100 %)
8 diff
(96.4 %id)
FN115743 breast carcinoma .a 1863 to 1972 109 to 1     Submitted on the opposite strand 109/109
(100 %)
1 diff
(99.1 %id)
AI468381 Prostate .a 1863 to 2121 259 to 1       259/259
(100 %)
3 diff
(98.9 %id)
FN070371 breast carcinoma .a 1876 to 1965 88 to 1     Submitted on the opposite strand 88/89
(98 %)
2 diff
(97.8 %id)
AI536579 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1877 to 2121 275 to 31   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 245/245
(100 %)
7 diff
(97.2 %id)
BQ347974 head_neck .a 1882 to 2064 1 to 183       183/183
(100 %)
5 diff
(97.3 %id)
AW378360 head_neck .a 1918 to 2064 1 to 147       147/147
(100 %)
1 diff
(99.4 %id)
CB105364 Liver .a 1951 to 2123 1 to 173       173/176
(98 %)
1 diff
(99.5 %id)
FN157616 breast carcinoma .a 1981 to 2083 1 to 104       104/104
(100 %)
4 diff
(96.2 %id)
EC541375 Prostate .a 1987 to 2080 105 to 11       95/105
(90 %)
0 diff
(100 %id)
AA522953 Ewing's sarcoma .a 1995 to 2123 8 to 136       129/147
(87 %)
4 diff
(97.3 %id)
BX366103 Neuroblastoma Cot 50-normalized .b 1 to 841 1 to 841   tiling clone,   841/841
(100 %)
4 diff
(99.6 %id)
BX387163 Neuroblastoma Cot 50-normalized .b 1 to 993 1 to 979   tiling clone,   979/1031
(94 %)
19 diff
(98.2 %id)
BX395380 Neuroblastoma Cot 50-normalized .b 1 to 1130 1 to 1130 E15* tiling clone,   1130/1130
(100 %)
38 diff
(96.7 %id)
BQ230074 embryonal carcinoma, cell line, testis .b 2 to 309 1 to 308       308/313
(98 %)
3 diff
(99.1 %id)
BI836147 pooled pancreas and spleen .b 20 to 765 1 to 811       651/820
(79 %)
42 diff
(94.9 %id)
TI_57164991   .b 20 to 765 36 to 846       586/855
(68 %)
37 diff
(95.7 %id)
BQ423360 embryonal carcinoma, cell line, testis .b 21 to 347 1 to 327       327/1466
(22 %)
8 diff
(99.5 %id)
BG389986 embryonal carcinoma, cell line, testis .b 24 to 800 1 to 776       776/1158
(67 %)
14 diff
(98.8 %id)
BM919279 pooled pancreas and spleen .b 58 to 801 1 to 749       749/1164
(64 %)
11 diff
(99.1 %id)
DA346368 substantia nigra .c 1 to 583 2 to 585   tiling clone, capped   584/584
(100 %)
2 diff
(99.7 %id)
AA013174 eye, retina .c 58 to 245 1 to 188       188/190
(98 %)
1 diff
(99.5 %id)
DA554143   .c 71 to 622 2 to 553   tiling clone, capped   552/552
(100 %)
2 diff
(99.7 %id)
BX501099 Liver .c 115 to 724 1 to 611       611/611
(100 %)
2 diff
(99.7 %id)
CR740251 liver and spleen .c 162 to 958 799 to 1     Submitted on the opposite strand 799/799
(100 %)
3 diff
(99.7 %id)
BM991185 lung, Lung Focal Fibrosis .c 348 to 1010 2 to 664   tiling clone, Submitted on the opposite strand 663/664
(99 %)
7 diff
(99.0 %id)
EB386373 eye, optic nerve .c 415 to 1140 1 to 729       729/733
(99 %)
3 diff
(99.6 %id)
BG547375 lung .c 468 to 1070 1 to 607       607/607
(100 %)
13 diff
(97.9 %id)
H72624 liver and spleen .c 551 to 929 1 to 394       394/395
(99 %)
23 diff
(94.2 %id)
AI434767 Kidney .c 585 to 1141 557 to 1       557/557
(100 %)
0 diff
(100 %id)
BX485457   .c 586 to 1203 1 to 623       623/623
(100 %)
4 diff
(99.4 %id)
R99489 liver and spleen .c 644 to 958 322 to 1     Submitted on the opposite strand 322/322
(100 %)
9 diff
(97.3 %id)
AI613089 Kidney .c 669 to 1151 492 to 10   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 483/492
(98 %)
0 diff
(100 %id)
BF088849 head_neck .c 847 to 1063 214 to 1       214/214
(100 %)
5 diff
(97.7 %id)
AA468917   .c 1134 to 1548 9 to 422   tiling clone,   414/422
(98 %)
6 diff
(98.6 %id)
CR627456 uterus .c 1181 to 4883 1 to 3705 C20W tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 3705/3705
(100 %)
16 diff
(99.6 %id)
DB222371 trachea .c 1214 to 1799 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
BG759960 B-cells, primary B-cells from tonsils (cell line) .c 1219 to 2054 1 to 837       837/838
(99 %)
10 diff
(98.9 %id)
DB318437   .c 1474 to 2041 567 to 1       567/567
(100 %)
1 diff
(99.9 %id)
AA288016 germinal center B cell .c 1505 to 1922 1 to 418       418/418
(100 %)
0 diff
(100 %id)
AW968348   .c 1529 to 2057 603 to 72   tiling clone, AAA Submitted on the opposite strand 532/605
(87 %)
0 diff
(100 %id)
BX471650   .c 1538 to 2123 1 to 585   tiling clone,   585/585
(100 %)
3 diff
(99.5 %id)
AA578429 bone marrow, stem cells .c 1606 to 2014 39 to 446       408/446
(91 %)
6 diff
(98.7 %id)
AA679789   .c 1611 to 2041 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AA468994   .c 1625 to 2042 418 to 1       418/418
(100 %)
0 diff
(100 %id)
H72625 liver and spleen .c 1634 to 2044 419 to 3       417/449
(92 %)
0 diff
(100 %id)
AI991760 adenocarcinoma, Pancreas .c 1682 to 2054 373 to 1   tiling clone,   373/373
(100 %)
0 diff
(100 %id)
T54674 fetal spleen, Spleen .c 1705 to 2041 340 to 1       340/433
(78 %)
5 diff
(98.9 %id)
DW426179 Liver .c 1730 to 1996 17 to 283       267/283
(94 %)
6 diff
(97.9 %id)
AA013175 eye, retina .c 1772 to 2042 270 to 1       270/270
(100 %)
2 diff
(99.3 %id)
TI_149309401   .c 2065 to 2654 678 to 89   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 590/1029
(57 %)
0 diff
(100 %id)
BU687801 lung .c 2083 to 2654 586 to 15   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 572/586
(97 %)
0 diff
(100 %id)
AW835745 leiomios .c 2235 to 2741 27 to 531       505/531
(95 %)
6 diff
(98.9 %id)
AA287949 germinal center B cell .c 2304 to 2638 335 to 1       335/335
(100 %)
1 diff
(99.8 %id)
AW664809 pooled .c 2368 to 2683 1 to 320     Submitted on the opposite strand 320/320
(100 %)
11 diff
(96.6 %id)
BE148503 head_neck .c 2528 to 3115 1 to 589       589/590
(99 %)
23 diff
(96.2 %id)
BE148512 head_neck .c 2531 to 3100 15 to 583   tiling clone,   569/583
(97 %)
7 diff
(98.8 %id)
AW379313 head_neck .c 2548 to 3100 567 to 15       553/567
(97 %)
0 diff
(100 %id)
AW605840 head_neck .c 2552 to 3100 562 to 14       549/589
(93 %)
0 diff
(100 %id)
AK131393 thalamus .c 2597 to 4875 1 to 2279 exact tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 2279/2279
(100 %)
1 diff
(100.0 %id)
DA382406 thalamus .c 2598 to 3169 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BE148382 head_neck .c 2600 to 3080 510 to 26     Submitted on the opposite strand 485/512
(94 %)
0 diff
(100 %id)
BE148421 head_neck .c 2667 to 3091 450 to 13     Submitted on the opposite strand 438/450
(97 %)
0 diff
(100 %id)
TI_149298368   .c 3012 to 3772 797 to 45       753/862
(87 %)
17 diff
(98.1 %id)
H90530 liver and spleen .c 3155 to 3515 1 to 362     Submitted on the opposite strand 362/362
(100 %)
5 diff
(98.7 %id)
CN283312 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 3173 to 3835 1 to 663       663/663
(100 %)
1 diff
(99.9 %id)
R98339 liver and spleen .c 3191 to 3553 1 to 375     Submitted on the opposite strand 375/375
(100 %)
17 diff
(95.5 %id)
CB850701 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 3216 to 3668 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
BU942029 mixed (pool of 40 RNAs) .c 3393 to 4090 1 to 705       705/710
(99 %)
11 diff
(98.5 %id)
DB349474 trachea .c 4373 to 4883 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
DB311490 thalamus .c 4457 to 4875 419 to 1       419/424
(98 %)
0 diff
(100 %id)
BQ948913 brain, neuroblastoma, cell line .d 1 to 852 22 to 880 exact tiling clone,   859/965
(89 %)
23 diff
(97.7 %id)
AA233597 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 307 to 491 1 to 184       184/184
(100 %)
1 diff
(99.5 %id)
BF971322 adrenal cortex carcinoma, cell line, adrenal gland .d 321 to 852 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
BF244268 brain, glioblastoma .d 398 to 1113 1 to 713       713/746
(95 %)
19 diff
(97.5 %id)
BX330499 Placenta Cot 25-normalized .d 521 to 1410 896 to 1       896/918
(97 %)
75 diff
(91.9 %id)
AA467978   .d 573 to 963 1 to 391       391/391
(100 %)
5 diff
(98.8 %id)
AA468126   .d 579 to 747 8 to 176       169/176
(96 %)
6 diff
(96.6 %id)
AA470335   .d 579 to 888 8 to 317       310/317
(97 %)
6 diff
(98.2 %id)
AA579507   .d 579 to 860 8 to 291       284/291
(97 %)
6 diff
(98.0 %id)
BE090102 breast .d 581 to 1020 1 to 440       440/440
(100 %)
1 diff
(99.8 %id)
BE869234 adenocarcinoma, colon .d 602 to 1233 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
CN284471 embryonic stem cells, DMSO-treated H9 cellline .d 646 to 1400 1 to 755   tiling clone,   755/755
(100 %)
0 diff
(100 %id)
W78201 heart .d 658 to 1085 1 to 429       429/429
(100 %)
1 diff
(99.8 %id)
BX454490 placenta .d 661 to 1394 746 to 15       732/909
(80 %)
0 diff
(100 %id)
BQ225235 epithelioid carcinoma, Pancreas .d 677 to 1412 1 to 811       811/876
(92 %)
7 diff
(99.3 %id)
BU608168 Human Lung Epithelial cells, lung .d 699 to 1408 727 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 709/722
(98 %)
2 diff
(99.8 %id)
CA307364 Alveolar Macrophage, lung .d 704 to 1408 723 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 705/705
(100 %)
0 diff
(100 %id)
TI_149278460   .d 714 to 1408 838 to 150   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 689/697
(98 %)
29 diff
(95.9 %id)
BU619308 Cell Line, Chondrosarcoma .d 741 to 1408 686 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 668/670
(99 %)
4 diff
(99.5 %id)
AA063487 pineal gland .d 744 to 1146 1 to 405   fully sequenced,   405/405
(100 %)
3 diff
(99.3 %id)
TI_149299346   .d 744 to 1412 725 to 60   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 666/796
(83 %)
8 diff
(99.0 %id)
AW887705 ovary .d 756 to 949 12 to 210       199/245
(81 %)
13 diff
(94.7 %id)
BM805127 ovary (pool of 3) .d 769 to 1410 26 to 667       642/667
(96 %)
0 diff
(100 %id)
BU678032 lung .d 777 to 1408 650 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 632/632
(100 %)
0 diff
(100 %id)
BU688181 lung .d 777 to 1408 649 to 18   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 632/632
(100 %)
0 diff
(100 %id)
BX414159 T cells (Jurkat cell line) .d 828 to 1413 603 to 12       592/757
(78 %)
32 diff
(95.8 %id)
CA419444 Bone, Human Chondrosarcoma Cell Line .d 846 to 1408 581 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 563/563
(100 %)
0 diff
(100 %id)
AI123564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 852 to 1411 560 to 1       560/560
(100 %)
0 diff
(100 %id)
BQ012870 placenta .d 860 to 1408 567 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 549/549
(100 %)
0 diff
(100 %id)
EB388255 eye, optic nerve .d 877 to 1409 1 to 533       533/533
(100 %)
6 diff
(98.9 %id)
AJ706382 bone marrow .d 880 to 1299 1 to 420       420/420
(100 %)
4 diff
(99.1 %id)
AA706250 parathyroid gland, parathyroid tumor .d 882 to 1413 540 to 9       532/540
(98 %)
0 diff
(100 %id)
BU752540 placenta .d 907 to 1408 520 to 18   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 503/503
(100 %)
1 diff
(99.9 %id)
BQ012375 placenta .d 908 to 1408 519 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 501/501
(100 %)
4 diff
(99.3 %id)
BM969325 lung, Primary Lung Epithelial Cells .d 908 to 1408 519 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 501/501
(100 %)
6 diff
(98.9 %id)
BF430980 pooled .d 909 to 1408 514 to 14   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 501/501
(100 %)
1 diff
(99.9 %id)
AV757472 bone marrow .d 917 to 1408 84 to 575   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 492/501
(98 %)
6 diff
(98.9 %id)
BQ018893 lung, Metastatic Chondrosarcoma .d 917 to 1408 507 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 489/489
(100 %)
1 diff
(99.8 %id)
BU752567 placenta .d 917 to 1408 510 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 492/492
(100 %)
1 diff
(99.8 %id)
BE567708 bladder, carcinoma, cell line .d 934 to 1411 1 to 477       477/489
(97 %)
3 diff
(99.4 %id)
AA865633 2 pooled tumors (clear cell type), Kidney .d 935 to 1411 480 to 4       477/480
(99 %)
0 diff
(100 %id)
AW241641 Kidney .d 938 to 1411 475 to 2       474/475
(99 %)
0 diff
(100 %id)
DB572340 hypothalamus .d 941 to 1412 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
AI149425 placenta .d 946 to 1413 468 to 1       468/468
(100 %)
0 diff
(100 %id)
DB517449 testis .d 949 to 1411 1 to 463     Submitted on the opposite strand 463/464
(99 %)
1 diff
(99.8 %id)
DB508871 testis .d 951 to 1406 1 to 450     Submitted on the opposite strand 450/452
(99 %)
15 diff
(96.7 %id)
BM975693 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 955 to 1412 472 to 15   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 458/458
(100 %)
0 diff
(100 %id)
AA526867.
matches multiple genes
Prostate .d 960 to 1406 8 to 442   tiling clone, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base), also hits gene neeklorbu 435/442
(98 %)
6 diff
(98.7 %id)
AW664444 2 pooled high-grade transitional celltumors, genitourinary tract .d 966 to 1411 451 to 6       446/451
(98 %)
0 diff
(100 %id)
AW024977 Kidney .d 986 to 1412 444 to 18   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 427/427
(100 %)
1 diff
(99.8 %id)
AI270361 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 987 to 1409 423 to 1       423/423
(100 %)
0 diff
(100 %id)
AI871736 carcinoid, lung .d 989 to 1408 435 to 16   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 420/420
(100 %)
4 diff
(99.1 %id)
FN141100 breast carcinoma .d 992 to 1060 1 to 68       68/68
(100 %)
5 diff
(92.7 %id)
AA233598 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 999 to 1410 412 to 1       412/412
(100 %)
0 diff
(100 %id)
AI080428 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1000 to 1410 411 to 1       411/411
(100 %)
0 diff
(100 %id)
H05969 whole brain .d 1003 to 1408 440 to 24   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 417/418
(99 %)
24 diff
(94.3 %id)
BM987132 mixed .d 1004 to 1408 423 to 19   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 405/413
(98 %)
0 diff
(100 %id)
AI300153 2 pooled tumors (clear cell type), Kidney .d 1008 to 1413 411 to 6       406/411
(98 %)
0 diff
(100 %id)
AI421415 brain, glioblastoma (pooled) .d 1008 to 1408 412 to 12   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 401/401
(100 %)
6 diff
(98.6 %id)
AA825877 germinal center B cell .d 1017 to 1408 402 to 11   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 392/392
(100 %)
3 diff
(99.3 %id)
BE842873 stomach .d 1020 to 1205 17 to 199       183/199
(91 %)
6 diff
(97.0 %id)
BI047816 stomach .d 1025 to 1205 1 to 180       180/181
(99 %)
16 diff
(91.2 %id)
EC573197 Prostate .d 1026 to 1131 1 to 105       105/105
(100 %)
1 diff
(99.1 %id)
BF437765 Prostate .d 1033 to 1411 380 to 2       379/380
(99 %)
0 diff
(100 %id)
AI351974 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1037 to 1411 375 to 1       375/377
(99 %)
0 diff
(100 %id)
W35377 parathyroid gland, parathyroid tumor .d 1043 to 1412 372 to 1       372/372
(100 %)
2 diff
(99.5 %id)
AA598802   .d 1048 to 1411 368 to 5       364/368
(98 %)
0 diff
(100 %id)
AA845194 Spleen .d 1062 to 1411 352 to 3       350/352
(99 %)
0 diff
(100 %id)
BY797880 eye .d 1073 to 1627 1 to 555   tiling clone,   555/555
(100 %)
0 diff
(100 %id)
AI754580 bone marrow stroma .d 1076 to 1411 371 to 36       336/371
(90 %)
0 diff
(100 %id)
AI424001 brain, glioblastoma (pooled) .d 1089 to 1407 321 to 3       319/321
(99 %)
0 diff
(100 %id)
AA063414 pineal gland .d 1116 to 1418 304 to 1   fully sequenced,   304/304
(100 %)
5 diff
(98.4 %id)
BF438548 brain, glioblastoma (pooled) .d 1155 to 1402 249 to 1       249/249
(100 %)
8 diff
(96.8 %id)
AA688257 normal prostate, Prostate .d 1191 to 1411 225 to 5       221/225
(98 %)
0 diff
(100 %id)
AI373627 Kidney .d 1250 to 1408 182 to 24   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 159/161
(98 %)
1 diff
(99.4 %id)
R99490 liver and spleen .d 1261 to 1533 1 to 272     Submitted on the opposite strand 272/272
(100 %)
2 diff
(99.3 %id)
AW138492   .d 1278 to 1408 148 to 18   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 131/141
(92 %)
0 diff
(100 %id)
EC497910.
matches multiple genes
Prostate .d 1348 to 1411 1 to 64   tiling clone, also hits gene neeklorbu 64/67
(95 %)
1 diff
(98.6 %id)
BX644427   .d 1481 to 1892 1 to 415   tiling clone,   415/415
(100 %)
6 diff
(98.6 %id)
BC028180 Breast, mammary adenocarcinoma. .e-u 1 to 958 11 to 967 L150P tiling clone, available from MGC, AAA   957/957
(100 %)
3 diff
(99.7 %id)
TI_57192960   .e-u 1 to 676 48 to 723 L150P H170T S171H R172G R173G ...     676/676
(100 %)
5 diff
(99.3 %id)
BI862069 breast, mammary adenocarcinoma, cell line .e-u 2 to 676 1 to 675 L150P H170T S171H R172G R173G ... available from MGC,   675/675
(100 %)
5 diff
(99.3 %id)
BX457460 thymus .e-u 81 to 1046 1 to 957       957/957
(100 %)
27 diff
(97.2 %id)
AI362946 anaplastic oligodendroglioma, brain .e-u 317 to 640 329 to 7       323/329
(98 %)
0 diff
(100 %id)
BF679507 Prostate .e-u 734 to 1435 1 to 692   tiling clone,   692/830
(83 %)
25 diff
(97.0 %id)
DA572670 whole embryo, mainly body .e-u 928 to 1681 2 to 757   tiling clone, capped   756/757
(99 %)
8 diff
(99.0 %id)
AK024805   .e-u 2028 to 3686 67 to 1725   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 1659/1725
(96 %)
6 diff
(99.7 %id)
BG536934 lung .e-u 2235 to 2960 1 to 727   tiling clone,   727/773
(94 %)
10 diff
(98.8 %id)
BF857035 prostate_tumor .e-u 2407 to 2629 4 to 224       221/224
(98 %)
9 diff
(96.0 %id)
AL703753 human skeletal muscle .e-u 2465 to 2937 1 to 471       471/471
(100 %)
5 diff
(99.0 %id)
AL703719 human skeletal muscle .e-u 2466 to 3075 1 to 610       610/610
(100 %)
3 diff
(99.6 %id)
BG570067 lung .e-u 2478 to 3308 1 to 826       826/876
(94 %)
26 diff
(97.1 %id)
BF130212 hypernephroma, Kidney .e-u 2789 to 3445 1 to 641       641/857
(74 %)
32 diff
(96.3 %id)
DB359742 whole embryo, mainly body .e-u 2957 to 3513 558 to 1       558/559
(99 %)
8 diff
(98.6 %id)
DB043726 testis .f 1 to 570 2 to 576   tiling clone, capped   575/575
(100 %)
6 diff
(99.0 %id)
DB443940 testis .f 17 to 468 1 to 452   tiling clone,   452/454
(99 %)
3 diff
(99.4 %id)
AW816681 stomach .f 471 to 740 281 to 13   tiling clone,   269/281
(95 %)
4 diff
(98.6 %id)
BQ423178 melanotic melanoma, skin .g 1 to 827 1 to 836 K132X F168S F170S tiling clone,   836/871
(95 %)
15 diff
(98.3 %id)
CN284477 embryonic stem cells, DMSO-treated H9 cellline .g 33 to 684 1 to 652   tiling clone,   652/652
(100 %)
0 diff
(100 %id)
AA280973 germinal center B cell .g 57 to 550 1 to 492       492/492
(100 %)
11 diff
(97.8 %id)
AA280893 germinal center B cell .g 1037 to 1485 449 to 1   tiling clone,   449/449
(100 %)
0 diff
(100 %id)
DB451923 testis .h 1 to 508 1 to 508   tiling clone,   508/509
(99 %)
3 diff
(99.5 %id)
CD243487 testis .h 8 to 719 1 to 724 L122P E129G K132*     724/993
(72 %)
20 diff
(98.0 %id)
TI_44170362   .h 22 to 751 115 to 844 exact     730/844
(86 %)
6 diff
(99.3 %id)
BG702882 brain, hippocampus .h 29 to 797 1 to 773 K123T M124N K125E G126Q E127V ...     773/773
(100 %)
9 diff
(98.9 %id)
BI553352 brain, hippocampus .h 29 to 751 1 to 723 exact tiling clone,   723/723
(100 %)
3 diff
(99.6 %id)
DB472710 hippocampus .h 34 to 517 1 to 484       484/493
(98 %)
0 diff
(100 %id)
BG699639 brain, hippocampus .h 41 to 805 1 to 766 K125N     766/767
(99 %)
13 diff
(98.4 %id)
CR622276 Placenta Cot 25-normalized .h 56 to 1734 1 to 1679 exact     1679/1679
(100 %)
0 diff
(100 %id)
AL552028 placenta, Placenta Cot 25-normalized .h 56 to 900 1 to 833 exact fully sequenced,   833/833
(100 %)
1 diff
(99.9 %id)
BX332875 Neuroblastoma Cot 25-normalized .h 58 to 667 1 to 613       613/822
(74 %)
28 diff
(96.6 %id)
BG899012 cartilage .h 59 to 583 86 to 610       525/542
(96 %)
7 diff
(98.8 %id)
CR607182 Placenta Cot 25-normalized .h 59 to 1718 1 to 1660 exact     1660/1660
(100 %)
0 diff
(100 %id)
AL554684 placenta, Placenta Cot 25-normalized .h 59 to 854 1 to 787 S58F S69C A144X fully sequenced,   787/787
(100 %)
5 diff
(99.4 %id)
BQ877869 dorsal root ganglia .h 59 to 774 14 to 731 Q85H Q93L S104I V113G N118H ...     718/962
(74 %)
36 diff
(96.3 %id)
CN284472 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 63 to 678 13 to 628       616/628
(98 %)
6 diff
(99.1 %id)
CR994672 T-Lymphocytes .h 63 to 985 1 to 924 exact     924/924
(100 %)
3 diff
(99.7 %id)
CR998267 T-Lymphocytes .h 63 to 985 1 to 923 exact     923/924
(99 %)
2 diff
(99.8 %id)
BM904693 leiomyosarcoma, uterus .h 65 to 797 9 to 746 E129G     738/1108
(66 %)
28 diff
(97.5 %id)
CR998052 T-Lymphocytes .h 67 to 985 1 to 921 exact     921/922
(99 %)
6 diff
(99.4 %id)
BQ427834 melanotic melanoma, skin .h 69 to 956 1 to 894 E127Q     894/905
(98 %)
19 diff
(98.0 %id)
BM548549 brain, hippocampus .h 70 to 996 11 to 949 M112P     939/1101
(85 %)
41 diff
(96.3 %id)
CR602734 B cells (Ramos cell line) .h 71 to 1726 1 to 1656 exact     1656/1656
(100 %)
0 diff
(100 %id)
AL559989 B cells (Ramos cell line), B cells from Burkitt lymphoma .h 71 to 1037 1 to 955 exact fully sequenced,   955/955
(100 %)
1 diff
(99.9 %id)
CN284476 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 76 to 571 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
BE882510 leiomyosarcoma, uterus .h 83 to 848 1 to 763 K125N G126R E127*     763/771
(98 %)
15 diff
(98.1 %id)
DR007142 Spleen .h 88 to 769 7 to 689 K134R K146N F147V     683/693
(98 %)
5 diff
(99.3 %id)
BQ218815 leiomyosarcoma, uterus .h 90 to 803 1 to 724 K125T E127G L128T E129G Q130T ...     724/1077
(67 %)
27 diff
(97.5 %id)
CN284474 embryonic stem cells, DMSO-treated H9 cellline .h 93 to 549 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
BQ422866 melanotic melanoma, skin .h 112 to 576 12 to 479       468/925
(50 %)
11 diff
(98.9 %id)
CR986257 T-Lymphocytes .h 116 to 1031 1 to 915 exact     915/916
(99 %)
6 diff
(99.4 %id)
D14661   .h 121 to 1742 1 to 1622 exact tiling clone, available from KIAA,   1622/1622
(100 %)
0 diff
(100 %id)
NM_152857.1   .h 121 to 1743 1 to 1623 exact RefSeq, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 1623/1623
(100 %)
0 diff
(100 %id)
CR605059 placenta .h 152 to 1724 1 to 1573 exact     1573/1573
(100 %)
0 diff
(100 %id)
BX417603 placenta .h 152 to 1084 1 to 932 exact     932/932
(100 %)
9 diff
(99.1 %id)
AL577327 placenta, Placenta Cot 25-normalized .h 824 to 1718 885 to 1   fully sequenced,   885/885
(100 %)
17 diff
(98.1 %id)
AL575461 placenta, Placenta Cot 25-normalized .h 870 to 1734 846 to 1   fully sequenced,   846/846
(100 %)
5 diff
(99.5 %id)
AL581508 B cells (Ramos cell line), B cells from Burkitt lymphoma .h 1007 to 1723 709 to 2   fully sequenced,   708/709
(99 %)
7 diff
(99.1 %id)
AK127822 placenta .i 1 to 1571 59 to 1629 exact tiling clone, available from FLJ,   1571/1629
(96 %)
7 diff
(99.6 %id)
DA847298 placenta .i 1 to 501 59 to 559   to resequence, capped   501/558
(89 %)
6 diff
(99.0 %id)
H38894 liver and spleen .i 668 to 1200 1 to 541   tiling clone,   541/541
(100 %)
20 diff
(96.4 %id)
DB328631 placenta .i 1056 to 1571 517 to 1   to resequence,   517/517
(100 %)
2 diff
(99.7 %id)
CB044975 colon, juvenile granulosa tumor .i 1593 to 2256 12 to 674   tiling clone, Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 663/674
(98 %)
6 diff
(99.2 %id)
CB044974 colon, juvenile granulosa tumor .i 2376 to 2866 507 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
H38813 liver and spleen .i 3329 to 3408 87 to 8   tiling clone,   80/87
(91 %)
0 diff
(100 %id)
DA138013 alzheimer cortex .j 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
BU594250 mixed (pool of 40 RNAs) .j 5 to 616 1 to 613   tiling clone,   613/915
(66 %)
12 diff
(98.7 %id)
BQ723716 sympathetic trunk .j 12 to 616 1 to 611       611/1023
(59 %)
21 diff
(98.0 %id)
BE906617 epithelioid carcinoma, Pancreas .j 15 to 547 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
DB501154 hypothalamus .j 96 to 593 1 to 499       499/499
(100 %)
2 diff
(99.6 %id)
BG704031 brain, hippocampus .j 96 to 849 7 to 764 L40S F120Y F121L K123N M124R ...     758/764
(99 %)
19 diff
(97.6 %id)
BU160767 melanotic melanoma, skin .j 110 to 969 1 to 864 exact     864/865
(99 %)
11 diff
(98.8 %id)
BI094486 cervix .j 115 to 747 29 to 661       633/663
(95 %)
10 diff
(98.5 %id)
CR602556 T cells (Jurkat cell line) .j 116 to 1809 1 to 1694 exact tiling clone,   1694/1694
(100 %)
0 diff
(100 %id)
BX396594 Placenta Cot 25-normalized .j 116 to 420 1 to 309       307/314
(97 %)
12 diff
(96.2 %id)
DA303473 hippocampus .j 120 to 709 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
NM_152858.1   .j 122 to 1842 1 to 1721 exact RefSeq, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 1721/1721
(100 %)
0 diff
(100 %id)
AU119665 whole embryo, mainly head .j 127 to 940 2 to 821 K31E S143N capped   820/825
(99 %)
12 diff
(98.6 %id)
AU123639   .j 130 to 874 2 to 749 F120X capped   748/751
(99 %)
7 diff
(99.1 %id)
CD515985 White Matter .j 134 to 1058 24 to 957 W145L K146E     934/958
(97 %)
33 diff
(96.6 %id)
BX426584 T cells (Jurkat cell line) .j 136 to 1063 20 to 928 exact fully sequenced,   909/928
(97 %)
7 diff
(99.3 %id)
CD558022 testis .j 139 to 1012 29 to 902 exact     874/907
(96 %)
7 diff
(99.3 %id)
BC000383 Lung, small cell carcinoma .j 141 to 969 1 to 829 exact available from MGC, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 829/829
(100 %)
1 diff
(99.9 %id)
BC004432 Lung, small cell carcinoma .j 141 to 969 1 to 829 exact available from MGC, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 829/829
(100 %)
1 diff
(99.9 %id)
BQ925311 large cell carcinoma, lung .j 141 to 1054 24 to 933 K132X K134X Q137T     910/934
(97 %)
34 diff
(96.4 %id)
TI_57196865   .j 149 to 1094 29 to 977 E129G Q130T T131D K132*     949/980
(96 %)
25 diff
(97.5 %id)
BG388508 embryonal carcinoma, cell line, testis .j 151 to 937 1 to 788 L40W E41R G42A K43S Y44T ...     788/923
(85 %)
17 diff
(98.2 %id)
BG913458 anaplastic oligodendroglioma with 1p/19qloss, brain .j 152 to 849 1 to 705 L40S K61Q F120*     705/705
(100 %)
14 diff
(98.1 %id)
BI824769 pooled brain, lung, testis .j 154 to 933 1 to 784 E129G Q130T T131D K132*     784/947
(82 %)
11 diff
(98.9 %id)
CD106596 brain, Pituitary .j 155 to 991 1 to 845 exact     845/847
(99 %)
11 diff
(98.8 %id)
BM549256 melanotic melanoma, skin .j 156 to 1055 1 to 915 exact     915/978
(93 %)
20 diff
(98.0 %id)
BQ438172 leiomyosarcoma, uterus .j 157 to 823 1 to 671 Q137P A144G W145L K146G F147S ...     671/916
(73 %)
13 diff
(98.6 %id)
BE264572 lung, small cell carcinoma .j 159 to 866 1 to 700 Q107N L108*     700/754
(92 %)
24 diff
(96.9 %id)
BE783529 eye, retinoblastoma .j 162 to 980 1 to 819 K132R Q139K N140M E141N L142*     819/1069
(76 %)
44 diff
(95.9 %id)
CD557784 testis .j 162 to 1020 27 to 894 exact     868/896
(96 %)
17 diff
(98.2 %id)
CR610864 fetal liver .j 176 to 1267 1 to 1092 exact     1092/1092
(100 %)
0 diff
(100 %id)
AL531094 brain, fetal liver, Liver, neuroblastoma cells .j 176 to 1267 1 to 1078 E84A Q85T E86R M87D Q88A ...     1078/1078
(100 %)
22 diff
(98.0 %id)
BX423672 fetal liver, Liver .j 176 to 1237 1 to 1046 exact     1046/1046
(100 %)
21 diff
(98.0 %id)
BU508203 leiomyosarcoma, uterus .j 187 to 1081 1 to 896 exact     896/896
(100 %)
5 diff
(99.5 %id)
CX867907 embryonic stem .j 191 to 979 1 to 789 exact     789/789
(100 %)
2 diff
(99.8 %id)
BF220160 lung, small cell carcinoma .j 207 to 921 715 to 1 L13X S14E E15* available from MGC,   715/733
(97 %)
13 diff
(98.3 %id)
BX433476 adult brain, brain .j 233 to 922 688 to 1 exact     688/688
(100 %)
5 diff
(99.3 %id)
DN999009 bone marrow .j 262 to 896 1 to 633 exact     633/633
(100 %)
7 diff
(98.9 %id)
DN602259 human embryonic stem cells .j 282 to 1011 1 to 730 exact     730/730
(100 %)
1 diff
(99.9 %id)
AA315309 colon .j 316 to 826 1 to 512 S14X E89X E136G K146E F147V ...     512/512
(100 %)
6 diff
(98.9 %id)
BI227212 Burkitt lymphoma, lymph .j 345 to 1099 43 to 799       757/799
(94 %)
12 diff
(98.5 %id)
BQ647373 hepatocellular carcinoma, cell line, Liver .j 348 to 1313 1 to 968       968/970
(99 %)
18 diff
(98.2 %id)
BM472081 melanotic melanoma, skin .j 352 to 1278 25 to 958       934/1041
(89 %)
22 diff
(97.9 %id)
BQ888200 hepatocellular carcinoma, cell line, Liver .j 356 to 1006 1 to 662       662/1051
(62 %)
23 diff
(97.9 %id)
BQ646389 hepatocellular carcinoma, cell line, Liver .j 365 to 1265 29 to 936       908/938
(96 %)
44 diff
(95.4 %id)
AA868349   .j 372 to 971 601 to 2       600/629
(95 %)
4 diff
(99.4 %id)
BG623737 placenta .j 376 to 1129 1 to 762       762/762
(100 %)
15 diff
(98.1 %id)
AA173878   .j 380 to 854 1 to 475       475/475
(100 %)
5 diff
(99.0 %id)
BX095338 parathyroid gland, parathyroid tumor .j 390 to 1080 1 to 691       691/691
(100 %)
1 diff
(99.9 %id)
AW949639   .j 391 to 1026 1 to 635       635/635
(100 %)
12 diff
(98.2 %id)
BG614342 embryonal carcinoma, testis .j 421 to 1199 1 to 793       793/800
(99 %)
28 diff
(96.5 %id)
BQ777138 Pancreas, Purified pancreatic islet .j 437 to 1048 1 to 612     Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 612/612
(100 %)
1 diff
(99.9 %id)
CD107194 brain, Pituitary .j 438 to 1069 1 to 634       634/852
(74 %)
3 diff
(99.7 %id)
AW248549 lung, small cell carcinoma .j 450 to 969 530 to 11   available from MGC, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 520/520
(100 %)
3 diff
(99.5 %id)
BG483837 lung .j 463 to 1116 1 to 657       657/838
(78 %)
15 diff
(98.3 %id)
BM887700 eye .j 475 to 955 1 to 491       491/498
(98 %)
11 diff
(97.8 %id)
BM829248 Ascites, stomach .j 479 to 985 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BM453486 leiomyosarcoma, uterus .j 498 to 1274 1 to 787       787/962
(81 %)
12 diff
(98.8 %id)
CF145501 CNCAP(3)T-225 cell line, Prostate .j 506 to 1160 1 to 657       657/657
(100 %)
11 diff
(98.4 %id)
CF145626 CNCAP(3)T-225 cell line, Prostate .j 506 to 1163 1 to 658       658/658
(100 %)
5 diff
(99.3 %id)
CF145460 CNCAP(3)T-225 cell line, Prostate .j 512 to 1160 7 to 657       651/657
(99 %)
8 diff
(98.8 %id)
TI_154177684   .j 512 to 1336 78 to 904       827/853
(96 %)
12 diff
(98.6 %id)
TI_154177735   .j 512 to 1347 68 to 901       834/838
(99 %)
19 diff
(97.8 %id)
TI_154177876   .j 512 to 1428 68 to 975       908/957
(94 %)
20 diff
(98.0 %id)
AA232987 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 521 to 946 1 to 425       425/425
(100 %)
1 diff
(99.8 %id)
AA243754 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 521 to 1103 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BF672437 muscle (skeletal) .j 544 to 1303 1 to 755       755/778
(97 %)
30 diff
(96.2 %id)
CB126714.
matches multiple genes
Liver .j 547 to 1013 19 to 485     This clone was ignored, also hits gene LOC646517 467/485
(96 %)
7 diff
(98.6 %id)
BF829910 head_normal .j 551 to 1005 23 to 478       456/490
(93 %)
13 diff
(97.4 %id)
AF277190   .j 560 to 1284 1 to 725       725/733
(98 %)
10 diff
(98.7 %id)
AA253198 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 569 to 998 1 to 429       429/429
(100 %)
1 diff
(99.8 %id)
BF901038 marrow .j 592 to 932 13 to 350       338/350
(96 %)
9 diff
(97.5 %id)
BI052592 placenta_normal .j 598 to 938 1 to 342       342/353
(96 %)
4 diff
(98.9 %id)
DT217003 brain .j 599 to 1255 1 to 657       657/657
(100 %)
0 diff
(100 %id)
AA045572 colon, tumor .j 645 to 1070 1 to 426       426/427
(99 %)
1 diff
(99.8 %id)
AL563941 brain, fetal liver, Liver, neuroblastoma cells .j 738 to 1809 1068 to 1       1068/1150
(92 %)
22 diff
(98.1 %id)
ES309502 occipital hair of pubic hypotrichosispatient, skin .j 739 to 1155 23 to 435       413/603
(68 %)
6 diff
(99.1 %id)
BX423671 fetal liver, Liver .j 743 to 1811 1067 to 1       1067/1103
(96 %)
27 diff
(97.6 %id)
BX444632 adult brain, brain .j 777 to 1814 1038 to 1       1038/1038
(100 %)
4 diff
(99.7 %id)
CR595437 fetal brain .j 787 to 1845 1 to 1059   tiling clone,   1059/1059
(100 %)
0 diff
(100 %id)
BX419826 brain, fetal brain .j 787 to 1688 1 to 902       902/902
(100 %)
0 diff
(100 %id)
BX359492 Placenta Cot 25-normalized .j 796 to 1789 1017 to 28       990/1029
(96 %)
0 diff
(100 %id)
BX496686 Liver .j 805 to 1381 1 to 578       578/583
(99 %)
3 diff
(99.5 %id)
BP430295   .j 843 to 1168 1 to 326       326/326
(100 %)
1 diff
(99.7 %id)
BM846538 myeloma .j 852 to 1492 1 to 639       639/639
(100 %)
3 diff
(99.6 %id)
CN284473 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .j 853 to 1165 1 to 313       313/313
(100 %)
5 diff
(98.5 %id)
BE872907 adenocarcinoma, colon .j 866 to 1644 1 to 770       770/799
(96 %)
18 diff
(97.8 %id)
TI_149277876   .j 869 to 1842 1058 to 87   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 972/1144
(84 %)
31 diff
(97.3 %id)
CD679247 eye, Trabecular meshwork .j 885 to 1505 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
BG169417 hypernephroma, cell line, Kidney .j 891 to 1695 1 to 801       801/877
(91 %)
26 diff
(97.1 %id)
BX417602 placenta .j 894 to 1817 927 to 7       921/927
(99 %)
0 diff
(100 %id)
H10960 whole brain .j 930 to 1370 1 to 452     Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 452/454
(99 %)
17 diff
(96.3 %id)
R68348 placenta .j 936 to 1316 1 to 395       395/397
(99 %)
22 diff
(94.5 %id)
CN284478 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 937 to 1583 1 to 647       647/647
(100 %)
1 diff
(99.9 %id)
T80248 whole brain .j 942 to 1388 1 to 467       467/493
(94 %)
25 diff
(95.0 %id)
CD559402 pooled .j 944 to 1689 1 to 750       750/760
(98 %)
6 diff
(99.3 %id)
TI_149309816   .j 944 to 1842 973 to 83   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 891/961
(92 %)
15 diff
(98.5 %id)
AA279256 germinal center B cell .j 946 to 1364 1 to 418       418/418
(100 %)
2 diff
(99.6 %id)
BF525898 brain, glioblastoma with EGFR amplification .j 948 to 1719 1 to 757       757/757
(100 %)
15 diff
(98.1 %id)
CD707878 normal nasopharynx .j 977 to 1242 1 to 269       269/269
(100 %)
8 diff
(97.1 %id)
AL564272 brain, fetal liver, Liver, neuroblastoma cells .j 1001 to 1817 818 to 1       818/818
(100 %)
2 diff
(99.8 %id)
BX426583 T cells (Jurkat cell line) .j 1033 to 1786 778 to 23   fully sequenced,   756/778
(97 %)
34 diff
(95.7 %id)
BX330069 Placenta Cot 25-normalized .j 1035 to 1813 848 to 60       789/901
(87 %)
0 diff
(100 %id)
AU145948 whole embryo, mainly head .j 1297 to 1842 540 to 1       540/561
(96 %)
14 diff
(97.6 %id)
BQ778248 Pancreas, Purified pancreatic islet .j 1343 to 1846 521 to 18   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 504/504
(100 %)
0 diff
(100 %id)
AA253199 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 1447 to 1844 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AA243635 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 1450 to 1845 396 to 1       396/396
(100 %)
0 diff
(100 %id)
AA233372 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 1476 to 1842 367 to 1       367/367
(100 %)
0 diff
(100 %id)
H10961 whole brain .j 1497 to 1842 369 to 23   AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 347/352
(98 %)
6 diff
(98.3 %id)
AA172208   .j 1637 to 1842 206 to 1       206/206
(100 %)
0 diff
(100 %id)
DB055118 testis .k 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
AV708967 adrenal gland .l 1 to 635 1 to 633 exact tiling clone,   633/649
(97 %)
15 diff
(97.7 %id)
DA012403 adrenal gland .m 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
CA439638 lung, Lung Focal Fibrosis .n 1 to 670 19 to 688 exact tiling clone, Submitted on the opposite strand 670/670
(100 %)
0 diff
(100 %id)
BI056172 placenta_normal .n 79 to 233 168 to 13       156/168
(92 %)
0 diff
(100 %id)
AW028001 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .n 228 to 662 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
DB164382 thymus .o 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
AI903807 breast .p-u 1 to 519 9 to 530 A15S V16C T17H C18L I19H ... tiling clone,   522/533
(97 %)
9 diff
(98.4 %id)
AI903975 breast .p-u 1 to 482 9 to 490 A15X V16X L22X F25L F27X     482/491
(98 %)
17 diff
(96.6 %id)
AI903980 breast .p-u 1 to 508 9 to 527 F9X F27X     519/528
(98 %)
18 diff
(96.6 %id)
AI903830 breast .p-u 53 to 539 479 to 1 K13* tiling clone,   479/526
(91 %)
14 diff
(97.4 %id)
AI903971 breast .p-u 82 to 539 457 to 1 F12L K13N T14Q A15P V16S ... tiling clone,   457/460
(99 %)
5 diff
(99.0 %id)
CD695116 normal nasopharynx .q-u 1 to 520 21 to 542 C34G tiling clone,   522/542
(96 %)
6 diff
(98.9 %id)
BF093887 uterus_tumor .r-u 1 to 314 15 to 328 V5L V8C N9E G10W G11R ... tiling clone,   314/328
(95 %)
6 diff
(98.2 %id)
AA505966 breast .r-u 111 to 392 282 to 1       282/282
(100 %)
0 diff
(100 %id)
CB243510 Human Lung Epithelial cells, lung .r-u 218 to 454 255 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 237/245
(96 %)
0 diff
(100 %id)
EC452910 Prostate .r-u 267 to 376 8 to 118       111/118
(94 %)
6 diff
(95.0 %id)
AW887063 ovary Gene WTAP, variant not shown         This clone was ignored    
CR606450 adult brain Gene WTAP, variant not shown         Suspected internal deletion, this clone was ignored    
AL532635 adult brain, brain Gene WTAP, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AL532682 adult brain, brain Gene WTAP, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AI126763 heart Gene WTAP, variant not shown         This clone was ignored    
AI150295   Gene WTAP, variant not shown         This clone was ignored    
AW009049 colon Gene WTAP, variant not shown         Suspected internal deletion, this clone was ignored    
BF446512 carcinoid, lung Gene WTAP, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DN999636   Gene WTAP, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p-u, .q-u, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI