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Gene WIPF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
423 supporting clones for gene WIPF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL834239 brain .a 1 to 2112 1 to 2112 exact tiling clone, available from DKFZ, AAA   2112/2112
(100 %)
1 diff
(100.0 %id)
AK289578 cerebellum .b 1 to 1528 2 to 1529 exact tiling clone,   1529/1529
(100 %)
0 diff
(100 %id)
DA125801 cerebellum .b 1 to 567 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA513056 brain .b 1 to 512 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA840418 placenta .c 1 to 545 2 to 547   tiling clone, capped   546/546
(100 %)
3 diff
(99.5 %id)
AK290301 tongue, tumor tissue .c 18 to 2696 13 to 2691 exact tiling clone,   2679/2691
(99 %)
7 diff
(99.8 %id)
DA437871 tongue, tumor tissue .c 18 to 557 13 to 552   capped   540/551
(98 %)
6 diff
(99.0 %id)
DA124395 cerebellum .c 64 to 611 2 to 552   capped   551/551
(100 %)
6 diff
(99.0 %id)
AF370396   .c 78 to 3188 1 to 3112 P373S P374S P375S P376T P377A ... tiling clone, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3112/3112
(100 %)
2 diff
(100.0 %id)
DA788160 brain .c 90 to 680 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DA111439 cerebellum .d 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
DA451925 tongue, tumor tissue .d 3 to 571 2 to 576   capped   575/575
(100 %)
4 diff
(99.4 %id)
AK289779 brain .d 18 to 1821 1 to 1804 exact     1804/1804
(100 %)
1 diff
(100.0 %id)
DA228136 brain .d 19 to 504 2 to 488   capped   487/487
(100 %)
3 diff
(99.4 %id)
BP216942 corpus callosum .d 19 to 601 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BP242291 Liver .d 19 to 580 1 to 562       562/562
(100 %)
5 diff
(99.2 %id)
BP286818 lung .d 19 to 601 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA708195   .d 19 to 572 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BP313693 mammary gland .d 19 to 606 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DA125553 cerebellum .d 20 to 589 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA414519 thalamus .d 20 to 583 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA747426   .d 20 to 578 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA932230 Spleen .d 20 to 586 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA999937 breast, tumor tissue .d 20 to 379 2 to 362   capped   361/361
(100 %)
1 diff
(99.8 %id)
DB066027 testis .d 20 to 571 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB079906 testis .d 20 to 589 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB158588 thymus .d 20 to 611 2 to 594   capped   593/593
(100 %)
4 diff
(99.4 %id)
DA158792 amygdala .d 22 to 589 2 to 570   capped   569/577
(98 %)
2 diff
(99.7 %id)
DA955192 Spleen .d 22 to 586 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
CN404607 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 37 to 735 1 to 699       699/699
(100 %)
0 diff
(100 %id)
NM_133264.4   .d 37 to 5561 1 to 5525 exact RefSeq,   5525/5525
(100 %)
0 diff
(100 %id)
DB121964 thymus .d 49 to 589 2 to 542   capped   541/541
(100 %)
5 diff
(99.1 %id)
DA479015   .d 53 to 623 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA632770 Kidney .d 53 to 589 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA901593   .d 53 to 574 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA727171   .d 55 to 625 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA128045 cerebellum .d 56 to 651 2 to 594   capped   593/593
(100 %)
4 diff
(99.4 %id)
AK315836 placenta .d 57 to 2100 1 to 2044 exact tiling clone,   2044/2044
(100 %)
3 diff
(99.9 %id)
DA527452 brain .d 58 to 651 2 to 596   capped   593/595
(99 %)
4 diff
(99.4 %id)
DA537394 Kidney .d 58 to 615 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA689789   .d 58 to 596 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA858522 placenta .d 58 to 562 2 to 507   capped   506/506
(100 %)
3 diff
(99.5 %id)
DB242719 stomach, tumor tissue .d 58 to 625 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA116194 cerebellum .d 59 to 648 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA177682 amygdala .d 59 to 562 2 to 506   capped   505/505
(100 %)
3 diff
(99.5 %id)
DB131724 thymus .d 59 to 487 2 to 433   capped   432/432
(100 %)
3 diff
(99.4 %id)
DB224580 trachea .d 59 to 611 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
CN404605 embryonic stem cells, cell lines H1, H7, andH9 .d 61 to 586 1 to 526       526/526
(100 %)
0 diff
(100 %id)
CF138628 lymph .d 63 to 577 8 to 522       515/522
(98 %)
6 diff
(98.9 %id)
TI_154168643   .d 63 to 801 97 to 845       749/769
(97 %)
20 diff
(97.4 %id)
DA117176 cerebellum .d 72 to 621 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA191104 amygdala .d 72 to 644 2 to 574   capped   573/578
(99 %)
1 diff
(99.9 %id)
DA943535 Spleen .d 72 to 303 2 to 233   capped   232/232
(100 %)
0 diff
(100 %id)
DB238774 trachea .d 72 to 638 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA932566 Spleen .d 73 to 628 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DN997600 breast cancer, Mammary gland (cancer tissue) .d 81 to 649 8 to 576       569/576
(98 %)
6 diff
(99.0 %id)
CN404606 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 84 to 490 1 to 407       407/407
(100 %)
0 diff
(100 %id)
BC065551 Testis, embryonal carcinoma .d 100 to 3223 1 to 3124 exact available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3124/3124
(100 %)
1 diff
(100.0 %id)
BU180953 embryonal carcinoma, cell line, testis .d 102 to 900 1 to 812       812/919
(88 %)
18 diff
(98.1 %id)
DA942181 Spleen .d 127 to 675 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB293339   .d 127 to 866 2 to 741   capped   740/742
(99 %)
14 diff
(98.2 %id)
CN404608 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 129 to 757 1 to 629       629/629
(100 %)
1 diff
(99.9 %id)
DA852734 placenta .d 155 to 702 2 to 549   capped   548/549
(99 %)
1 diff
(99.9 %id)
DN999448   .d 173 to 790 8 to 625       618/626
(98 %)
12 diff
(98.1 %id)
CN404604 embryonic stem cells, DMSO-treated H9 cellline .d 209 to 533 1 to 325       325/325
(100 %)
3 diff
(99.1 %id)
DA803672 brain .d 217 to 781 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA434774 tongue, tumor tissue .d 236 to 768 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
AA339495 brain .d 255 to 588 1 to 337       337/357
(94 %)
7 diff
(98.1 %id)
TI_154142549   .d 264 to 705 519 to 78     Submitted on the opposite strand 442/747
(59 %)
7 diff
(99.1 %id)
AB043786   .d 277 to 1599 1 to 1323 exact     1323/1323
(100 %)
0 diff
(100 %id)
AJ431177   .d 277 to 1599 1 to 1323 Q82H     1323/1323
(100 %)
2 diff
(99.9 %id)
CN404603 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 285 to 821 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
AW405325 lymph .d 292 to 705 421 to 8     Submitted on the opposite strand 414/421
(98 %)
2 diff
(99.6 %id)
DA306839 hippocampus .d 338 to 913 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BG755304 B-cells, primary B-cells from tonsils (cell line) .d 344 to 810 1 to 469       469/572
(81 %)
5 diff
(99.2 %id)
BI020639 marrow .d 381 to 850 1 to 469       469/469
(100 %)
4 diff
(99.2 %id)
BP220891 colon .d 445 to 1009 1 to 566       566/566
(100 %)
14 diff
(97.6 %id)
BF749341 breast_normal .d 447 to 728 308 to 27     Submitted on the opposite strand 282/308
(91 %)
0 diff
(100 %id)
BU166009 melanotic melanoma, skin .d 496 to 1336 1 to 841       841/874
(96 %)
17 diff
(98.1 %id)
AL540178 brain, fetal brain .d 554 to 1361 1 to 801       801/984
(81 %)
18 diff
(98.2 %id)
AW752923 colon .d 588 to 856 273 to 1       273/332
(82 %)
23 diff
(93.1 %id)
DA679086   .d 682 to 1164 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
BG248142 adenocarcinoma cell line, colon .d 893 to 1311 1 to 421       421/1217
(34 %)
12 diff
(99.1 %id)
BG419601 Kidney, renal cell adenocarcinoma .d 908 to 1246 1 to 338       338/383
(88 %)
2 diff
(99.5 %id)
CN338562 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1015 to 1296 1 to 282       282/282
(100 %)
6 diff
(97.9 %id)
BC043408 Skin, melanotic melanoma. .d 1080 to 3223 1 to 2144   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2144/2144
(100 %)
0 diff
(100 %id)
BQ231404 melanotic melanoma, skin .d 1081 to 1934 1 to 866   available from MGC,   866/869
(99 %)
23 diff
(97.4 %id)
DA303111 hippocampus .d 1121 to 1588 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
CR607942 fetal brain .d 1243 to 3198 1 to 1956       1956/1956
(100 %)
0 diff
(100 %id)
BQ227680 large cell carcinoma, lung .d 1243 to 2091 1 to 857       857/873
(98 %)
17 diff
(98.1 %id)
DA838630 placenta .d 1316 to 1822 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
C18002 placenta .d 1347 to 1673 1 to 327       327/327
(100 %)
1 diff
(99.7 %id)
CN338561 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1366 to 2050 1 to 686       686/688
(99 %)
2 diff
(99.8 %id)
BG402661 Kidney .d 1370 to 2139 19 to 792       774/844
(91 %)
35 diff
(95.9 %id)
BF207599 bladder, carcinoma, cell line .d 1427 to 1995 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BG402529 Kidney .d 1456 to 2130 1 to 674       674/828
(81 %)
15 diff
(98.2 %id)
AU119866 whole embryo, mainly head .d 1464 to 2227 2 to 765   capped   764/766
(99 %)
6 diff
(99.3 %id)
BQ216068 melanotic melanoma, skin .d 1465 to 2227 62 to 835       774/921
(84 %)
21 diff
(97.8 %id)
TI_159696672   .d 1481 to 2269 872 to 89   AAA   784/992
(79 %)
5 diff
(99.5 %id)
BG776709 lung, mucoepidermoid carcinoma .d 1492 to 2157 1 to 672       672/698
(96 %)
25 diff
(96.5 %id)
CN338560 embryonic stem cells, DMSO-treated H9 cellline .d 1512 to 2166 9 to 663       655/663
(98 %)
7 diff
(99.0 %id)
H96483 pineal gland .d 1519 to 1912 1 to 399       399/410
(97 %)
7 diff
(98.3 %id)
DA039756 bladder .d 1524 to 2100 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BX456893 thymus .d 1524 to 2443 1 to 922       922/922
(100 %)
18 diff
(98.1 %id)
BU185290 ductal carcinoma, cell line, Pancreas .d 1534 to 2503 1 to 970       970/973
(99 %)
26 diff
(97.4 %id)
BQ688043 ductal carcinoma, cell line, Pancreas .d 1534 to 2496 1 to 966       966/970
(99 %)
14 diff
(98.6 %id)
W79928 heart .d 1543 to 1986 1 to 444       444/444
(100 %)
0 diff
(100 %id)
C17078   .d 1548 to 1798 1 to 252       252/252
(100 %)
1 diff
(99.7 %id)
BM313530 Pancreas, Purified pancreatic islet .d 1564 to 2082 2 to 520       519/520
(99 %)
5 diff
(99.1 %id)
BP206582 coronary artery .d 1574 to 2148 1 to 575       575/585
(98 %)
8 diff
(98.7 %id)
BX433179 brain, fetal brain .d 1586 to 2290 710 to 5       706/746
(94 %)
0 diff
(100 %id)
BU618338 Cell Line, Chondrosarcoma .d 1593 to 2269 695 to 19   AAA   677/677
(100 %)
0 diff
(100 %id)
CA950588 Pancreas, Purified pancreatic islet .d 1597 to 2001 1 to 405   fully sequenced,   405/405
(100 %)
0 diff
(100 %id)
BU622152 Cell Line, Chondrosarcoma .d 1599 to 2269 689 to 19   AAA   671/672
(99 %)
2 diff
(99.8 %id)
BQ015835 lung, Metastatic Chondrosarcoma .d 1600 to 2273 685 to 15   AAA   671/671
(100 %)
6 diff
(99.2 %id)
BI088181 cervix .d 1603 to 2388 1 to 794       794/830
(95 %)
12 diff
(98.6 %id)
M62085   .d 1606 to 1887 1 to 283       283/283
(100 %)
4 diff
(98.6 %id)
F13340 brain, total brain .d 1614 to 1943 1 to 330       330/330
(100 %)
0 diff
(100 %id)
U90911 brain .d 1614 to 3223 1 to 1610   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1610/1610
(100 %)
0 diff
(100 %id)
Z43622 brain, total brain .d 1615 to 1884 1 to 271       271/336
(80 %)
9 diff
(97.4 %id)
H11550 whole brain .d 1615 to 2115 1 to 513       513/519
(98 %)
16 diff
(97.0 %id)
CN480645 Cell Line, Chondrosarcoma .d 1622 to 2269 666 to 19   AAA   648/648
(100 %)
0 diff
(100 %id)
D56040   .d 1628 to 1856 1 to 229       229/229
(100 %)
1 diff
(99.6 %id)
D56231   .d 1628 to 1973 1 to 346       346/346
(100 %)
2 diff
(99.5 %id)
AW054819 anaplastic oligodendroglioma, brain .d 1650 to 2117 485 to 18   AAA   468/468
(100 %)
8 diff
(98.3 %id)
CK821990 Pancreas, Purified pancreatic islet .d 1654 to 2247 601 to 8     Submitted on the opposite strand 594/601
(98 %)
0 diff
(100 %id)
BI964169 Islets of Langerhans, Pancreas .d 1686 to 2162 1 to 477       477/477
(100 %)
5 diff
(99.0 %id)
BM052838 Islets of Langerhans, Pancreas .d 1702 to 2179 1 to 478       478/478
(100 %)
0 diff
(100 %id)
CB127671 cervix, Uterine .d 1721 to 2098 1 to 378       378/378
(100 %)
0 diff
(100 %id)
DB331146   .d 1729 to 2273 545 to 1       545/545
(100 %)
0 diff
(100 %id)
BP384920 pancreatic islet .d 1733 to 2231 1 to 499     Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
BE002689 breast_normal .d 1753 to 1877 1 to 129       129/129
(100 %)
4 diff
(96.9 %id)
CN338563 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1757 to 2360 1 to 606       606/606
(100 %)
2 diff
(99.7 %id)
R15537   .d 1790 to 2123 330 to 1       330/330
(100 %)
17 diff
(94.9 %id)
BG115824 duodenal adenocarcinoma, cell line, small intestine .d 1798 to 2516 1 to 701       701/936
(74 %)
29 diff
(97.0 %id)
BP253047 Kidney .d 1811 to 2376 13 to 578       566/578
(97 %)
6 diff
(99.0 %id)
BM313371 Pancreas, Purified pancreatic islet .d 1817 to 2244 428 to 1       428/428
(100 %)
0 diff
(100 %id)
AA972200 pooled .d 1843 to 2291 451 to 3       449/451
(99 %)
0 diff
(100 %id)
BE296111 muscle, rhabdomyosarcoma .d 1843 to 2422 1 to 579       579/579
(100 %)
5 diff
(99.2 %id)
BM457318 embryonal carcinoma, cell line, testis .d 1861 to 2649 1 to 800       800/993
(80 %)
41 diff
(95.9 %id)
BI253784 cervical carcinoma cell line, cervix .d 1872 to 2708 1 to 837       837/885
(94 %)
25 diff
(97.2 %id)
CN485147 eye .d 1894 to 2470 1 to 575       575/575
(100 %)
3 diff
(99.5 %id)
AA348880 adrenal gland .d 1919 to 2135 1 to 217       217/222
(97 %)
1 diff
(99.6 %id)
AW959966   .d 1920 to 2499 1 to 581       581/582
(99 %)
13 diff
(97.8 %id)
BG422316 Kidney, renal cell adenocarcinoma .d 1935 to 2494 1 to 562       562/593
(94 %)
10 diff
(98.4 %id)
EC532828 Prostate .d 1952 to 2055 104 to 1       104/104
(100 %)
0 diff
(100 %id)
CA950353 Pancreas, Purified pancreatic islet .d 1971 to 2244 274 to 1   fully sequenced,   274/274
(100 %)
0 diff
(100 %id)
AW501665 lymph .d 2017 to 2153 1 to 137       137/137
(100 %)
7 diff
(94.9 %id)
AA346078 NULL, omentum .d 2028 to 2273 246 to 1       246/251
(98 %)
0 diff
(100 %id)
AA128400 uterus .d 2066 to 2487 1 to 423       423/427
(99 %)
6 diff
(98.6 %id)
CB122071 Liver .d 2107 to 2541 1 to 435       435/435
(100 %)
0 diff
(100 %id)
BF772638 epid_tumor .d 2142 to 2585 451 to 10     Submitted on the opposite strand 442/451
(98 %)
0 diff
(100 %id)
AL568267 brain, fetal brain .d 2145 to 3198 1048 to 1       1048/1048
(100 %)
23 diff
(97.9 %id)
EC472978 Prostate .d 2151 to 2282 125 to 1       125/128
(97 %)
6 diff
(95.4 %id)
AA995642 carcinoid, lung .d 2170 to 2342 1 to 173     Submitted on the opposite strand 173/173
(100 %)
0 diff
(100 %id)
AW801760 uterus .d 2189 to 2628 1 to 440       440/440
(100 %)
8 diff
(98.2 %id)
BF964038 nervous_normal .d 2190 to 2576 1 to 386       386/386
(100 %)
8 diff
(98.0 %id)
BF976459 B-cells, primary B-cells from tonsils (cell line) .d 2198 to 3012 1 to 809       809/862
(93 %)
19 diff
(97.8 %id)
CB162918 Liver .d 2209 to 2759 1 to 551       551/551
(100 %)
0 diff
(100 %id)
CB162927 Liver .d 2209 to 2759 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BM456938 embryonal carcinoma, cell line, testis .d 2213 to 3212 1 to 1005   AAA   1005/1021
(98 %)
19 diff
(98.2 %id)
BM456939 embryonal carcinoma, cell line, testis .d 2213 to 2971 1 to 763       763/1065
(71 %)
22 diff
(98.0 %id)
AW801506 uterus .d 2223 to 2528 1 to 307       307/307
(100 %)
4 diff
(98.7 %id)
CA868085 Pancreas, Purified pancreatic islet .d 2228 to 2680 8 to 459   fully sequenced,   452/459
(98 %)
5 diff
(99.0 %id)
DA441164 tongue, tumor tissue .d 2238 to 2827 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA442677 tongue, tumor tissue .d 2238 to 2821 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AA485572 lung .d 2238 to 2446 1 to 210       210/210
(100 %)
1 diff
(99.6 %id)
AA137231 colon, tumor .d 2244 to 2611 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
DA961942 Spleen .d 2250 to 2732 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
AA485549 lung .d 2262 to 2514 1 to 253       253/253
(100 %)
2 diff
(99.3 %id)
AA135045 colon, tumor .d 2268 to 2690 1 to 423   fully sequenced,   423/423
(100 %)
4 diff
(99.1 %id)
T84608 liver and spleen .d 2269 to 2519 1 to 255       255/397
(64 %)
11 diff
(97.3 %id)
AA114147   .d 2294 to 2738 1 to 445       445/445
(100 %)
2 diff
(99.6 %id)
BE562651 endometrium, adenocarcinoma cell line, uterus .d 2311 to 3117 1 to 805       805/818
(98 %)
22 diff
(97.4 %id)
AW675087 cervical carcinoma cell line, cervix .d 2330 to 2785 1 to 456   fully sequenced,   456/456
(100 %)
0 diff
(100 %id)
BM719601 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2456 to 2895 1 to 440       440/440
(100 %)
0 diff
(100 %id)
TI_149298287   .d 2457 to 3223 850 to 86   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 765/958
(79 %)
10 diff
(99.0 %id)
AA314079 muscle .d 2462 to 2781 1 to 324       324/324
(100 %)
8 diff
(97.6 %id)
BU940436 mixed (pool of 40 RNAs) .d 2491 to 3173 1 to 701       701/850
(82 %)
37 diff
(95.7 %id)
BM983050 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2524 to 3241 716 to 1       716/716
(100 %)
2 diff
(99.8 %id)
H16141 breast .d 2544 to 2890 1 to 351   fully sequenced,   351/351
(100 %)
1 diff
(99.8 %id)
DB266315 uterus .d 2548 to 3130 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
AA469203   .d 2583 to 3030 1 to 449       449/449
(100 %)
4 diff
(99.2 %id)
EB361142 eye, lens .d 2589 to 3242 655 to 1       655/655
(100 %)
3 diff
(99.6 %id)
BY995967   .d 2591 to 3223 659 to 27   AAA Submitted on the opposite strand 633/633
(100 %)
0 diff
(100 %id)
AA085777 uterus .d 2618 to 3223 602 to 1       602/602
(100 %)
8 diff
(98.7 %id)
DA107627 cerebellum .d 2619 to 3011 190 to 582   capped   393/581
(67 %)
6 diff
(99.0 %id)
AI279017 carcinoid, lung .d 2637 to 3230 594 to 1       594/594
(100 %)
0 diff
(100 %id)
BP428746   .d 2644 to 3016 1 to 376       376/376
(100 %)
5 diff
(98.7 %id)
CA868332 Pancreas, Purified pancreatic islet .d 2650 to 3226 577 to 1   fully sequenced,   577/577
(100 %)
0 diff
(100 %id)
DB383275   .d 2654 to 3223 567 to 1       567/571
(99 %)
5 diff
(99.2 %id)
AA134964 colon, tumor .d 2660 to 3224 561 to 1   fully sequenced,   561/561
(100 %)
9 diff
(98.4 %id)
DA946982 Spleen .d 2660 to 3223 2 to 565   capped, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 564/564
(100 %)
0 diff
(100 %id)
BM749089 stomach .d 2677 to 3020 344 to 1     Submitted on the opposite strand 344/344
(100 %)
3 diff
(99.2 %id)
H26178 breast .d 2684 to 3070 1 to 390     Submitted on the opposite strand 390/396
(98 %)
7 diff
(98.3 %id)
TI_149281450   .d 2685 to 3223 617 to 79   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 539/808
(66 %)
1 diff
(99.9 %id)
BM983416 lung, Primary Lung Epithelial Cells .d 2685 to 3241 557 to 1       557/567
(98 %)
1 diff
(99.9 %id)
AL702990 human skeletal muscle .d 2699 to 3452 1 to 754       754/754
(100 %)
1 diff
(99.9 %id)
AI826866 adenocarcinoma, Pancreas .d 2711 to 3200 491 to 1       491/491
(100 %)
3 diff
(99.4 %id)
AW801756 uterus .d 2718 to 3111 396 to 3       394/396
(99 %)
0 diff
(100 %id)
AI832096 colon, colon tumor, RER+ .d 2720 to 3223 504 to 1       504/504
(100 %)
4 diff
(99.3 %id)
AA813984 germinal center B cell .d 2744 to 3173 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AW673923 cervical carcinoma cell line, cervix .d 2755 to 3225 471 to 1   fully sequenced,   471/471
(100 %)
0 diff
(100 %id)
BG056374 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .d 2756 to 3224 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
AI379979 B-cell, chronic lymphotic leukemia .d 2765 to 3227 463 to 1       463/463
(100 %)
0 diff
(100 %id)
AI217937   .d 2766 to 3247 482 to 1       482/482
(100 %)
0 diff
(100 %id)
AI683408 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 2767 to 3234 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AU146098 whole embryo, mainly head .d 2775 to 3223 452 to 1       452/453
(99 %)
9 diff
(98.1 %id)
BE939451 uterus .d 2779 to 3149 1 to 374       374/379
(98 %)
11 diff
(97.1 %id)
AI680476 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2779 to 3228 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AA594623 colon, colon tumor RER+ .d 2781 to 3223 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI096978 brain, glioblastoma (pooled) .d 2785 to 3232 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
BE171592 head_neck .d 2787 to 2955 168 to 1     Submitted on the opposite strand 168/178
(94 %)
2 diff
(98.9 %id)
W78154 heart .d 2787 to 3227 443 to 1       443/446
(99 %)
4 diff
(99.2 %id)
AA113859   .d 2796 to 3225 430 to 1       430/430
(100 %)
2 diff
(99.6 %id)
BF378092 testis_normal .d 2799 to 3176 29 to 407       379/408
(92 %)
15 diff
(96.4 %id)
BQ304267 breast .d 2799 to 3208 417 to 8       410/423
(96 %)
0 diff
(100 %id)
CD636162   .d 2800 to 3024 1 to 225       225/242
(92 %)
7 diff
(97.2 %id)
AI090321 B-cell, chronic lymphotic leukemia .d 2801 to 3224 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
CD636163   .d 2805 to 3024 237 to 17       221/242
(91 %)
0 diff
(100 %id)
AA320208 adipose tissue, white .d 2814 to 3141 1 to 330       330/331
(99 %)
3 diff
(99.1 %id)
AI088648 uterus .d 2814 to 3225 412 to 1       412/412
(100 %)
0 diff
(100 %id)
AA135426 colon, tumor .d 2820 to 3230 407 to 1       407/410
(99 %)
6 diff
(98.6 %id)
DB533629 hippocampus .d 2822 to 3223 1 to 408     Submitted on the opposite strand 408/408
(100 %)
15 diff
(96.4 %id)
AA485411 lung .d 2825 to 3225 413 to 1       413/413
(100 %)
12 diff
(97.1 %id)
AI571975 adenocarcinoma, Pancreas .d 2850 to 3237 388 to 1       388/388
(100 %)
0 diff
(100 %id)
BQ312664 breast_normal .d 2853 to 3176 358 to 38       321/358
(89 %)
0 diff
(100 %id)
AI453637 pooled .d 2854 to 3228 375 to 1       375/375
(100 %)
0 diff
(100 %id)
AI220874 placenta .d 2856 to 3228 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
H15833 breast .d 2860 to 3224 367 to 1   fully sequenced,   367/367
(100 %)
3 diff
(99.2 %id)
AI276582 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2873 to 3225 353 to 1       353/353
(100 %)
0 diff
(100 %id)
AA469133   .d 2882 to 3236 355 to 1       355/355
(100 %)
3 diff
(99.2 %id)
AA348879 adrenal gland .d 2885 to 3223 338 to 1       338/339
(99 %)
1 diff
(99.8 %id)
F02943 brain, total brain .d 2889 to 3223 335 to 1       335/335
(100 %)
1 diff
(99.8 %id)
T91033 liver and spleen .d 2900 to 3225 332 to 1       332/402
(82 %)
8 diff
(98.1 %id)
AW103652 brain, tumor, 5 pooled (see description) .d 2901 to 3231 331 to 1       331/331
(100 %)
0 diff
(100 %id)
AA485390 lung .d 2906 to 3208 307 to 1       307/307
(100 %)
15 diff
(95.2 %id)
CX865306 embryonic stem .d 2915 to 3716 17 to 819       803/819
(98 %)
10 diff
(98.8 %id)
AA364043 pineal body .d 2922 to 3222 1 to 302       302/304
(99 %)
2 diff
(99.4 %id)
F17316 pectoral muscle (after mastectomy) .d 2928 to 3224 1 to 298       298/298
(100 %)
10 diff
(96.7 %id)
F10937 brain, total brain .d 2931 to 3223 293 to 1       293/293
(100 %)
2 diff
(99.4 %id)
DA993221 synovial membrane tissue from rheumatioidarthritis .d 3007 to 3546 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AI268005 carcinoid, lung .d 3022 to 3209 1 to 188     Submitted on the opposite strand 188/188
(100 %)
0 diff
(100 %id)
AA349040 adrenal gland .d 3033 to 3223 1 to 191       191/191
(100 %)
1 diff
(99.5 %id)
AA397364   .d 3059 to 3236 178 to 1       178/178
(100 %)
1 diff
(99.5 %id)
DA932523 Spleen .d 3062 to 3630 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA028532   .d 3168 to 3729 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BQ653754 hepatocellular carcinoma, cell line, Liver .d 3188 to 4099 1 to 915   tiling clone,   915/918
(99 %)
23 diff
(97.5 %id)
BQ647228 hepatocellular carcinoma, cell line, Liver .d 3188 to 4107 1 to 922       922/922
(100 %)
50 diff
(94.6 %id)
DA785352 brain .d 3200 to 3752 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
DA816584   .d 3229 to 3793 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB273553 uterus .d 3230 to 3585 2 to 358   capped   357/357
(100 %)
1 diff
(99.8 %id)
DA158079 amygdala .d 3248 to 3822 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA299718 hippocampus .d 3248 to 3810 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BM556184 amelanotic melanoma, cell line, skin .d 3255 to 4175 1 to 927       927/1152
(80 %)
24 diff
(98.0 %id)
AV709351 adrenal gland .d 3257 to 3844 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
BG121458 adenocarcinoma, cell line, Liver .d 3294 to 4031 1 to 735       735/931
(78 %)
20 diff
(97.9 %id)
DR000458 fetal brain .d 3349 to 4022 1 to 671       671/671
(100 %)
4 diff
(99.5 %id)
AW997954 breast_normal .d 3366 to 3527 169 to 8     Submitted on the opposite strand 162/173
(93 %)
0 diff
(100 %id)
BC019706 Bladder, transitional cell papilloma .d 3412 to 5485 1 to 2074   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (23/23 A in genome downstream of last aligned base) 2074/2074
(100 %)
0 diff
(100 %id)
BG289654 bladder, transitional cell papilloma, cell line .d 3414 to 4045 1 to 631   available from MGC,   631/841
(75 %)
12 diff
(98.6 %id)
DA674310   .d 3426 to 3975 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA025769   .d 3469 to 4033 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BI669636 brain, hypothalamus .d 3480 to 4176 1 to 702   available from MGC,   702/717
(97 %)
27 diff
(96.3 %id)
AK055025 cerebellum .d 3481 to 5485 1 to 2003   available from FLJ,   2003/2003
(100 %)
4 diff
(99.9 %id)
DA061071 cerebellum .d 3482 to 4023 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DB273575 uterus .d 3484 to 4008 2 to 527   capped   526/526
(100 %)
5 diff
(99.1 %id)
DB493626 hypothalamus .d 3485 to 3990 1 to 506       506/506
(100 %)
2 diff
(99.7 %id)
BC047435 Brain, hypothalamus .d 3485 to 6055 1 to 2571   tiling clone, available from MGC, AAA   2571/2571
(100 %)
3 diff
(99.9 %id)
TI_44345163   .d 3485 to 4176 85 to 781       697/796
(87 %)
23 diff
(97.2 %id)
DA529747 brain .d 3487 to 4097 2 to 613   capped   612/612
(100 %)
3 diff
(99.6 %id)
CB129457 cervix, Uterine .d 3490 to 4026 1 to 537       537/537
(100 %)
3 diff
(99.5 %id)
DA071948 cerebellum .d 3494 to 4062 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BC064504 Lung, epidermoid carcinoma .d 3496 to 5485 1 to 1990   available from MGC, AAA Possibly primed on the genome, locally A rich (23/23 A in genome downstream of last aligned base) 1990/1990
(100 %)
1 diff
(100.0 %id)
BU527939 epidermoid carcinoma, cell line, lung .d 3498 to 4358 1 to 872   available from MGC,   872/877
(99 %)
32 diff
(96.4 %id)
CA489226   .d 3516 to 4370 1 to 863       863/889
(97 %)
18 diff
(98.0 %id)
BX488187   .d 3528 to 4144 1 to 618       618/618
(100 %)
10 diff
(98.4 %id)
AA325556 brain, cerebellum .d 3645 to 4032 1 to 388       388/388
(100 %)
2 diff
(99.5 %id)
DA070385 cerebellum .d 3691 to 4251 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
AA369861 Prostate .d 3724 to 4026 1 to 303       303/303
(100 %)
2 diff
(99.4 %id)
BE062045 breast .d 3772 to 4251 494 to 8     Submitted on the opposite strand 487/494
(98 %)
0 diff
(100 %id)
BF747319 breast .d 3823 to 4303 495 to 19     Submitted on the opposite strand 477/495
(96 %)
0 diff
(100 %id)
BM904589 leiomyosarcoma, uterus .d 3835 to 4640 1 to 806       806/1081
(74 %)
15 diff
(98.7 %id)
Z43804 brain, total brain .d 3877 to 4204 1 to 329       329/329
(100 %)
3 diff
(99.1 %id)
AL710026 human skeletal muscle .d 3899 to 4631 1 to 731       731/740
(98 %)
3 diff
(99.6 %id)
TI_154185584   .d 3910 to 4749 120 to 950       831/981
(84 %)
21 diff
(97.9 %id)
AI761615 pooled .d 3920 to 4358 453 to 15   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 439/439
(100 %)
2 diff
(99.6 %id)
N33753 melanocyte .d 3941 to 4180 1 to 241       241/241
(100 %)
1 diff
(99.6 %id)
BE062044 breast .d 3959 to 4284 329 to 1     Submitted on the opposite strand 329/329
(100 %)
7 diff
(97.9 %id)
BM561343 amelanotic melanoma, cell line, skin .d 3979 to 4908 1 to 937       937/1067
(87 %)
30 diff
(97.2 %id)
CB134940 Liver .d 4017 to 4570 1 to 554       554/554
(100 %)
0 diff
(100 %id)
BQ774047 Bone, Human Chondrosarcoma Cell Line .d 4024 to 4702 1 to 679     Submitted on the opposite strand 679/679
(100 %)
3 diff
(99.6 %id)
BQ775106 Bone, Human Chondrosarcoma Cell Line .d 4024 to 4545 1 to 522     Submitted on the opposite strand 522/522
(100 %)
3 diff
(99.5 %id)
BE551229 carcinoid, lung .d 4027 to 4370 344 to 1       344/344
(100 %)
0 diff
(100 %id)
BM995768 Chondrosarcoma, Left Pubic Bone .d 4028 to 4699 1 to 667     Submitted on the opposite strand 667/667
(100 %)
5 diff
(99.3 %id)
BF956061 nervous_normal .d 4106 to 4268 164 to 2       163/164
(99 %)
0 diff
(100 %id)
BM721961 eye, fetal eye .d 4115 to 4714 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
BM687012 eye, optic nerve .d 4134 to 4527 9 to 402       394/402
(98 %)
0 diff
(100 %id)
FN073800 breast carcinoma .d 4146 to 4237 1 to 91       91/96
(94 %)
4 diff
(95.9 %id)
AA374196 lung .d 4151 to 4480 1 to 330       330/330
(100 %)
0 diff
(100 %id)
CA428984 Cell Line, Chondrosarcoma .d 4243 to 4924 11 to 692     Submitted on the opposite strand 682/692
(98 %)
6 diff
(99.2 %id)
N48481.
matches multiple genes
multiple sclerosis lesions .d 4303 to 4599 1 to 296     also hits gene FMR1 296/296
(100 %)
1 diff
(99.7 %id)
CD671700 eye, Iris .d 4323 to 4966 1 to 644       644/644
(100 %)
0 diff
(100 %id)
TI_57190287   .d 4349 to 5117 54 to 822       769/896
(85 %)
23 diff
(97.5 %id)
BI856875 breast, mammary adenocarcinoma, cell line .d 4350 to 5117 1 to 768       768/895
(85 %)
23 diff
(97.5 %id)
DA261508 caudate nucleus .d 4412 to 4934 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
BQ231120 epithelioid carcinoma, Pancreas .d 4432 to 5151 1 to 720       720/898
(80 %)
4 diff
(99.6 %id)
BQ943597 large cell carcinoma, lung .d 4573 to 5396 1 to 836       836/929
(89 %)
18 diff
(98.1 %id)
BE735561 adenocarcinoma, Pancreas .d 4586 to 5352 1 to 760       760/784
(96 %)
11 diff
(98.6 %id)
W23182 eye, retina .d 4639 to 5049 418 to 9       410/601
(68 %)
12 diff
(98.1 %id)
BM709736 eye, Retina Foveal and Macular .d 4647 to 5017 1 to 371   fully sequenced,   371/371
(100 %)
0 diff
(100 %id)
TI_149287978   .d 4727 to 5517 795 to 5       791/1018
(77 %)
0 diff
(100 %id)
BM794486 Ascites, stomach .d 4737 to 5317 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
FN080167 breast carcinoma .d 4752 to 4814 63 to 1     Submitted on the opposite strand 63/64
(98 %)
0 diff
(100 %id)
BM678476 eye, fetal eye .d 4786 to 5503 715 to 1       715/715
(100 %)
3 diff
(99.6 %id)
BQ574462 Chondrosarcoma Grade II, Left Pelvis .d 4789 to 5503 714 to 1       714/714
(100 %)
5 diff
(99.3 %id)
N58620 liver and spleen .d 4795 to 5046 1 to 256   fully sequenced,   256/256
(100 %)
0 diff
(100 %id)
AA410625 ovarian tumor, ovary .d 4843 to 5184 1 to 341   fully sequenced,   341/341
(100 %)
2 diff
(99.5 %id)
AA478170 ovarian tumor, ovary .d 4844 to 5115 1 to 271   fully sequenced,   271/271
(100 %)
1 diff
(99.7 %id)
AA464098 ovarian tumor, ovary .d 4844 to 5186 1 to 342   fully sequenced,   342/342
(100 %)
1 diff
(99.8 %id)
FN118568 breast carcinoma .d 4847 to 4939 1 to 90       90/90
(100 %)
3 diff
(96.7 %id)
BM709928 eye, Retina Foveal and Macular .d 4852 to 4953 1 to 101   fully sequenced,   101/101
(100 %)
0 diff
(100 %id)
BU727483 eye, optic nerve .d 4914 to 5503 590 to 1       590/590
(100 %)
0 diff
(100 %id)
CN295462 embryonic stem cells, DMSO-treated H9 cellline .d 4923 to 5330 1 to 408       408/408
(100 %)
0 diff
(100 %id)
BU736700 eye, Retina Foveal and Macular .d 4923 to 5503 581 to 1   fully sequenced,   581/581
(100 %)
0 diff
(100 %id)
DB297009 cerebellum .d 4947 to 5485 540 to 1       540/540
(100 %)
2 diff
(99.7 %id)
BE222106 carcinoid, lung .d 4948 to 5489 542 to 1       542/542
(100 %)
0 diff
(100 %id)
BG230612 blood, lymphocyte .d 4948 to 5496 549 to 1       549/549
(100 %)
0 diff
(100 %id)
TI_154185347   .d 4952 to 5509 667 to 107     Submitted on the opposite strand 561/1062
(52 %)
0 diff
(100 %id)
AA700166 liver and spleen .d 4972 to 5485 514 to 1       514/514
(100 %)
0 diff
(100 %id)
BU733690 eye, Retina Foveal and Macular .d 4987 to 5503 515 to 1   fully sequenced,   515/515
(100 %)
0 diff
(100 %id)
BP397505 pancreatic islet .d 4988 to 5484 1 to 500     Submitted on the opposite strand 500/500
(100 %)
2 diff
(99.6 %id)
AI754829 bone marrow stroma .d 4992 to 5504 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
AI888324 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 5007 to 5510 513 to 10       504/513
(98 %)
0 diff
(100 %id)
CF147438 lymph .d 5014 to 5509 505 to 10     Submitted on the opposite strand 496/505
(98 %)
0 diff
(100 %id)
N53219 liver and spleen .d 5016 to 5485 470 to 1   fully sequenced,   470/470
(100 %)
1 diff
(99.8 %id)
AI380104 B-cell, chronic lymphotic leukemia .d 5017 to 5484 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AA644667 lung .d 5020 to 5485 466 to 1       466/466
(100 %)
0 diff
(100 %id)
FN056315 breast carcinoma .d 5023 to 5080 1 to 58       58/59
(98 %)
3 diff
(95.0 %id)
AI307362 2 pooled tumors (clear cell type), Kidney .d 5025 to 5491 467 to 1       467/470
(99 %)
0 diff
(100 %id)
AW016776   .d 5026 to 5502 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
AA707102 liver and spleen .d 5034 to 5380 346 to 1       346/346
(100 %)
1 diff
(99.8 %id)
AA676448 liver and spleen .d 5037 to 5485 450 to 1       450/450
(100 %)
3 diff
(99.4 %id)
AI274328 adenocarcinoma, colon .d 5041 to 5492 452 to 1       452/452
(100 %)
0 diff
(100 %id)
AI422567 brain, glioblastoma (pooled) .d 5043 to 5479 443 to 7       437/443
(98 %)
0 diff
(100 %id)
AI077695 brain, glioblastoma (pooled) .d 5046 to 5491 446 to 1       446/446
(100 %)
0 diff
(100 %id)
N24616 melanocyte .d 5050 to 5485 437 to 1       437/438
(99 %)
4 diff
(99.1 %id)
AA835495 Spleen .d 5059 to 5489 432 to 1       432/432
(100 %)
2 diff
(99.6 %id)
AI092765 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 5080 to 5489 410 to 1       410/410
(100 %)
0 diff
(100 %id)
AA478014 ovarian tumor, ovary .d 5085 to 5486 402 to 1   fully sequenced,   402/402
(100 %)
0 diff
(100 %id)
AA846013 Spleen .d 5092 to 5489 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AA984685 schizophrenic brain S-11 frontal lobe .d 5100 to 5439 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
AI768031 2 pooled tumors (clear cell type), Kidney .d 5111 to 5491 381 to 1       381/381
(100 %)
2 diff
(99.5 %id)
AI915594 pooled .d 5113 to 5489 377 to 1       377/377
(100 %)
2 diff
(99.5 %id)
AA235685 ovarian tumor, ovary .d 5154 to 5486 333 to 1   fully sequenced,   333/333
(100 %)
1 diff
(99.7 %id)
AA463961 ovarian tumor, ovary .d 5156 to 5485 330 to 1   fully sequenced,   330/330
(100 %)
0 diff
(100 %id)
AI033180 liver and spleen .d 5161 to 5485 325 to 1       325/325
(100 %)
1 diff
(99.7 %id)
H80328 liver and spleen .d 5166 to 5420 1 to 255       255/260
(98 %)
1 diff
(99.7 %id)
AA315290 colon .d 5177 to 5486 1 to 310       310/310
(100 %)
1 diff
(99.7 %id)
AI961529 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 5181 to 5485 305 to 1       305/305
(100 %)
0 diff
(100 %id)
AW024984 Kidney .d 5185 to 5490 306 to 1       306/306
(100 %)
1 diff
(99.7 %id)
AA373022 lung .d 5208 to 5485 278 to 1     Submitted on the opposite strand 278/278
(100 %)
0 diff
(100 %id)
Z39870 brain, total brain .d 5239 to 5485 247 to 1       247/247
(100 %)
0 diff
(100 %id)
AA101925 uterus .d 5261 to 5486 1 to 226       226/226
(100 %)
1 diff
(99.6 %id)
FN172991 breast carcinoma .d 5273 to 5374 1 to 104       104/109
(95 %)
7 diff
(93.6 %id)
BF089536 head_neck .d 5289 to 5462 186 to 14       173/186
(93 %)
0 diff
(100 %id)
CR748272   .d 5293 to 5931 1 to 640       640/641
(99 %)
2 diff
(99.7 %id)
TI_159713577   .d 5305 to 6059 1 to 747     Submitted on the opposite strand 747/985
(75 %)
21 diff
(97.9 %id)
AA227591 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 5342 to 5696 1 to 358   fully sequenced,   358/358
(100 %)
6 diff
(98.4 %id)
CD675785 eye, lens .d 5363 to 5971 1 to 610       610/610
(100 %)
1 diff
(99.9 %id)
CB240594 Human Lung Epithelial cells, lung .d 5386 to 5999 33 to 646     Submitted on the opposite strand 614/646
(95 %)
6 diff
(99.1 %id)
GD136995   .d 5394 to 5500 1 to 107       107/107
(100 %)
4 diff
(96.3 %id)
BF848512 lung_normal .d 5421 to 5865 463 to 21     Submitted on the opposite strand 443/463
(95 %)
0 diff
(100 %id)
AA682524 liver and spleen .d 5469 to 5970 502 to 1       502/502
(100 %)
2 diff
(99.7 %id)
BQ380471 uterus_tumor .d 5478 to 5780 306 to 5       302/313
(96 %)
0 diff
(100 %id)
BQ001349 lung, Metastatic Chondrosarcoma .d 5481 to 6061 594 to 13   AAA   582/583
(99 %)
6 diff
(99.0 %id)
BF943129 nervous_normal .d 5488 to 5777 307 to 19     Submitted on the opposite strand 289/312
(92 %)
0 diff
(100 %id)
BM676731 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 5490 to 6061 584 to 13   AAA   572/590
(96 %)
0 diff
(100 %id)
BM719866 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 5490 to 5765 1 to 276       276/276
(100 %)
3 diff
(99.0 %id)
CA444741 lung, Metastatic Chondrosarcoma .d 5504 to 6061 570 to 13   AAA   558/566
(98 %)
0 diff
(100 %id)
AA676803 liver and spleen .d 5509 to 6035 523 to 1       523/523
(100 %)
6 diff
(98.9 %id)
AI640840 Kidney .d 5523 to 6061 540 to 1       540/540
(100 %)
4 diff
(99.3 %id)
BE772517 prostate_tumor .d 5525 to 6003 478 to 1       478/478
(100 %)
2 diff
(99.6 %id)
ES309202 occipital hair of pubic hypotrichosispatient, skin .d 5536 to 6061 38 to 564   AAA   527/564
(93 %)
3 diff
(99.5 %id)
AA704867 liver and spleen .d 5537 to 6027 494 to 4       491/494
(99 %)
0 diff
(100 %id)
AW665044 pooled .d 5547 to 6062 516 to 1       516/516
(100 %)
0 diff
(100 %id)
BF969315 adrenal cortex carcinoma, cell line, adrenal gland .d 5558 to 6178 1 to 620       620/622
(99 %)
2 diff
(99.7 %id)
AW015565   .d 5560 to 6061 513 to 12   AAA   502/502
(100 %)
1 diff
(99.9 %id)
AA825559 germinal center B cell .d 5568 to 6061 508 to 14   AAA   495/495
(100 %)
1 diff
(99.8 %id)
BE819343 breast_normal .d 5577 to 5986 419 to 5       415/419
(99 %)
0 diff
(100 %id)
AA678085 liver and spleen .d 5587 to 6026 439 to 1       439/439
(100 %)
3 diff
(99.4 %id)
AW080494 pooled .d 5592 to 6064 473 to 1       473/473
(100 %)
1 diff
(99.8 %id)
AI582159 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 5593 to 6060 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AI381996 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 5594 to 6063 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AA704911 liver and spleen .d 5595 to 6032 438 to 1       438/438
(100 %)
2 diff
(99.6 %id)
DB564698 hypothalamus .d 5596 to 6061 1 to 466     Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
AI040761 liver and spleen .d 5596 to 6026 430 to 1       430/430
(100 %)
3 diff
(99.4 %id)
AA099175 uterus .d 5602 to 6055 453 to 1       453/453
(100 %)
5 diff
(98.9 %id)
BE772503 prostate_tumor .d 5605 to 5967 375 to 2       374/375
(99 %)
0 diff
(100 %id)
FN132030 breast carcinoma .d 5606 to 5715 110 to 1     Submitted on the opposite strand 110/114
(96 %)
0 diff
(100 %id)
CN291369 embryonic stem cells, DMSO-treated H9 cellline .d 5614 to 6005 1 to 392       392/392
(100 %)
0 diff
(100 %id)
BE550068 carcinoid, lung .d 5622 to 6066 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AW263106 pooled .d 5638 to 6062 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AA227908 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 5666 to 6063 398 to 1   fully sequenced,   398/398
(100 %)
2 diff
(99.5 %id)
AI765434 2 pooled tumors (clear cell type), Kidney .d 5670 to 6064 395 to 1       395/395
(100 %)
3 diff
(99.3 %id)
BU738921 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 5672 to 6061 402 to 13   AAA   390/390
(100 %)
7 diff
(98.3 %id)
BF917152 uterus_tumor .d 5692 to 5986 295 to 1     Submitted on the opposite strand 295/295
(100 %)
2 diff
(99.4 %id)
H80329 liver and spleen .d 5701 to 6006 304 to 1       304/304
(100 %)
3 diff
(99.1 %id)
AA744983 Ewing's sarcoma .d 5706 to 6066 361 to 4       358/371
(96 %)
0 diff
(100 %id)
AA777472 liver and spleen .d 5707 to 6035 328 to 1       328/328
(100 %)
2 diff
(99.4 %id)
AI051479 parathyroid gland, parathyroid tumor .d 5714 to 6066 356 to 5       352/356
(98 %)
0 diff
(100 %id)
AA904996 pooled .d 5740 to 6064 324 to 1       324/324
(100 %)
2 diff
(99.4 %id)
BU537578 mixed (pool of 40 RNAs) .d 5742 to 6371 1 to 637   tiling clone,   637/786
(81 %)
15 diff
(98.1 %id)
AA732333 germinal center B cell .d 5835 to 6055 235 to 15   AAA   221/221
(100 %)
0 diff
(100 %id)
TI_57240379   .d 6023 to 6496 35 to 515   tiling clone, AAA   481/628
(76 %)
12 diff
(98.1 %id)
TI_59381201   .e 1 to 590 124 to 717   tiling clone,   592/727
(81 %)
25 diff
(96.6 %id)
BM012010 brain, neuroblastoma, cell line .e 2 to 590 1 to 593   available from MGC,   591/726
(81 %)
25 diff
(96.6 %id)
BC025965 Brain, neuroblastoma .e 3 to 3145 1 to 3143 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3143/3143
(100 %)
0 diff
(100 %id)
DB245759 uterus, tumor tissue .e 20 to 500 2 to 484   capped   483/483
(100 %)
4 diff
(99.2 %id)
BP284061 bone marrow .f 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
DA505596 brain .f 388 to 956 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
AK055057 brain .g 1 to 2403 2 to 2404 exact tiling clone, available from FLJ,   2404/2404
(100 %)
3 diff
(99.9 %id)
DA197699 brain .g 1 to 453 2 to 454   capped   453/453
(100 %)
1 diff
(99.8 %id)
DB303801 brain .g 1827 to 2403 577 to 1       577/580
(99 %)
1 diff
(99.9 %id)
BQ324212 colon_ins .h 1 to 461 502 to 41 G109R P111Q A112S L113V Q114L ... tiling clone,   462/502
(92 %)
1 diff
(99.9 %id)
BP313350 mammary gland .i 1 to 581 2 to 582 exact tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
DA203805 brain .i 5 to 568 2 to 566 exact capped   565/565
(100 %)
1 diff
(99.9 %id)
DB249103 uterus .i 40 to 556 2 to 518 exact capped   517/517
(100 %)
0 diff
(100 %id)
DA948655 Spleen .j 1 to 547 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
DB063473 testis .j 1 to 542 2 to 550   capped   549/549
(100 %)
7 diff
(98.8 %id)
DA432934 cord Blood .j 87 to 624 2 to 539 exact tiling clone, capped   538/538
(100 %)
2 diff
(99.7 %id)
AW800080 uterus .j 340 to 541 12 to 212       201/218
(92 %)
3 diff
(98.7 %id)
TI_43963206   .k 1 to 712 37 to 765 E25R A27E C28R R29A G30C ...     735/829
(88 %)
25 diff
(97.0 %id)
BI520313 brain, medulla .k 1 to 712 3 to 731 E25R A27E C28R R29A G30C ... tiling clone,   731/795
(91 %)
22 diff
(97.3 %id)
DA195654 amygdala .l 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA323968 hippocampus .m 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BX410063 brain, fetal brain .m 173 to 999 1 to 828 P15T P26S V58E L88M tiling clone,   828/852
(97 %)
49 diff
(94.3 %id)
R19549 whole brain .m 203 to 547 1 to 349 Q71S R72E I73D Y74I P75S ...     349/349
(100 %)
5 diff
(98.6 %id)
BP379281 uterus .m 208 to 791 1 to 584 exact tiling clone,   584/584
(100 %)
3 diff
(99.5 %id)
DA581599 lung .n 1 to 558 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
BX108542 liver and spleen .o-u 1 to 803 1 to 802 exact tiling clone,   802/802
(100 %)
4 diff
(99.6 %id)
T88760 liver and spleen .o-u 1 to 492 1 to 509 H87S H88P C89L P90F V91R ... tiling clone,   509/513
(99 %)
26 diff
(95.0 %id)
R01428 liver and spleen .o-u 551 to 923 386 to 1   tiling clone,   386/390
(98 %)
17 diff
(95.7 %id)
R00764 liver and spleen .o-u 615 to 906 296 to 1       296/297
(99 %)
4 diff
(98.7 %id)
CA312771 Human Lung Epithelial cells, lung .o-u 815 to 1322 509 to 1   tiling clone,   509/518
(98 %)
1 diff
(99.9 %id)
BM917440 blood, natural killer cells, cell line .p-u 1 to 647 1 to 648 exact tiling clone,   648/1133
(57 %)
12 diff
(99.0 %id)
DA933942 Spleen .q 1 to 505 2 to 506 exact tiling clone, capped   505/505
(100 %)
0 diff
(100 %id)
DA058991 cerebellum .r 1 to 451 2 to 449 R29E E30R R31A A32C C33R ... tiling clone, capped   448/448
(100 %)
3 diff
(99.4 %id)
AW844433 colon_normal .s-u 1 to 180 190 to 3 R4* tiling clone,   188/197
(95 %)
0 diff
(100 %id)
TI_151746180   Gene WIPF2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_151770722   Gene WIPF2, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
BM667201 eye, fetal eyes Gene WIPF2, variant not shown       AAA This clone was ignored    
BM698035 eye, fetal eyes Gene WIPF2, variant not shown         This clone was ignored    
AL044566 testis Gene WIPF2, variant not shown         This clone was ignored    
AL044567 testis Gene WIPF2, variant not shown       AAA This clone was ignored    
AK311544 Spleen Gene WIPF2, variant not shown         This clone was ignored    
AK026913 colon Gene WIPF2, variant not shown       available from FLJ, AAA Suspected internal deletion, this clone was ignored    
BC030561.
matches multiple genes
Brain, fetal, whole pooled Gene WIPF2, variant not shown       available from MGC, AAA This clone was ignored, also hits gene slerta    
BC030561.
matches multiple genes
Brain, fetal, whole pooled Gene slerta, variant not shown       available from MGC, AAA This clone was ignored, also hits gene slerta    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p-u, .q, .r, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI