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Gene WIPI1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
279 supporting clones for gene WIPI1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_017983.5   .a 1 to 1923 1 to 1923 exact RefSeq, AAA   1923/1923
(100 %)
0 diff
(100 %id)
DC380076 placenta .a 1 to 343 1 to 343   tiling clone,   343/343
(100 %)
0 diff
(100 %id)
BP253496 Kidney .a 8 to 577 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
BX398919 Placenta Cot 25-normalized .a 14 to 1049 1 to 1027       1027/1030
(99 %)
13 diff
(98.8 %id)
BM923417 pooled colon, kidney, stomach .a 18 to 865 11 to 866       856/1117
(76 %)
27 diff
(97.6 %id)
BG680800 skin, squamous cell carcinoma .a 23 to 788 1 to 769       769/769
(100 %)
10 diff
(98.7 %id)
TI_45236530   .a 23 to 689 65 to 735       671/735
(91 %)
14 diff
(98.1 %id)
BJ991622 hepatoblastoma .a 25 to 562 1 to 538       538/538
(100 %)
0 diff
(100 %id)
BJ991692 hepatoblastoma .a 25 to 444 1 to 420       420/420
(100 %)
0 diff
(100 %id)
AA043660 uterus .a 25 to 475 1 to 450       450/450
(100 %)
10 diff
(97.8 %id)
BP264568 umbilical vein .a 26 to 600 1 to 575       575/575
(100 %)
6 diff
(99.0 %id)
DC395683 testis .a 28 to 569 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
BI517645 pooled colon, kidney, stomach .a 31 to 689 1 to 664       664/664
(100 %)
8 diff
(98.8 %id)
CB106573 Liver .a 32 to 488 1 to 457       457/457
(100 %)
6 diff
(98.7 %id)
DC304332 cerebellum .a 34 to 611 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC345251 colon .a 34 to 631 1 to 598       598/598
(100 %)
3 diff
(99.5 %id)
DC297129 cord Blood .a 34 to 599 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DC297132 cord Blood .a 34 to 796 1 to 764       764/777
(98 %)
15 diff
(98.1 %id)
DC365790   .a 34 to 580 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
DC367249   .a 34 to 554 1 to 522       522/523
(99 %)
3 diff
(99.5 %id)
DC380685 placenta .a 34 to 600 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC380991 placenta .a 34 to 592 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC392773 breast, tumor tissue .a 34 to 595 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC381191 placenta .a 35 to 583 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC301152 bladder .a 36 to 610 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC393037 breast, tumor tissue .a 36 to 611 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DC300740 bladder .a 38 to 610 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC393459 cervix, tumor tissue .a 38 to 586 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DC305203 cerebellum .a 39 to 586 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
DC379083 pericardium .a 39 to 611 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC295646 synovial membrane tissue from rheumatioidarthritis .a 39 to 605 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
BP333218 salivary gland .a 42 to 620 1 to 579       579/581
(99 %)
7 diff
(98.8 %id)
CN362096 embryonic stem cells, DMSO-treated H9 cellline .a 47 to 571 9 to 533       525/533
(98 %)
10 diff
(98.2 %id)
BX380839 Placenta Cot 25-normalized .a 47 to 782 1 to 736       736/844
(87 %)
7 diff
(99.2 %id)
BM924731 pooled colon, kidney, stomach .a 47 to 1050 16 to 1035       1020/1133
(90 %)
27 diff
(97.7 %id)
DN996136 breast cancer, Mammary gland (cancer tissue) .a 51 to 680 9 to 638       630/638
(98 %)
7 diff
(99.0 %id)
BE878842 large cell carcinoma, undifferentiated, lung .a 60 to 775 1 to 712       712/772
(92 %)
13 diff
(98.4 %id)
AA482531 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 70 to 311 1 to 242       242/242
(100 %)
4 diff
(98.4 %id)
BC039867 Skin, melanotic melanoma. .a 80 to 1923 36 to 1879 T31I tiling clone, available from MGC, AAA   1876/1876
(100 %)
1 diff
(100.0 %id)
DA050621   .a 80 to 562 55 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA051816   .a 80 to 652 36 to 608   capped   607/607
(100 %)
1 diff
(99.9 %id)
DA052331   .a 80 to 449 57 to 426   capped   425/425
(100 %)
1 diff
(99.8 %id)
DA262337 caudate nucleus .a 80 to 581 57 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BF727196 eye, lens .a 80 to 582 19 to 521       521/521
(100 %)
1 diff
(99.9 %id)
DA423289   .a 80 to 576 38 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA424475   .a 80 to 612 38 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BX956223   .a 80 to 711 48 to 679       679/683
(99 %)
3 diff
(99.6 %id)
BE386483 melanotic melanoma, skin .a 80 to 623 8 to 551       551/557
(98 %)
4 diff
(99.3 %id)
BG749480 eye, normal pigmented retinal epithelium .a 80 to 882 61 to 877       817/880
(92 %)
24 diff
(97.3 %id)
BI819186 pooled brain, lung, testis .a 80 to 885 19 to 826       826/827
(99 %)
5 diff
(99.4 %id)
BQ232193 melanotic melanoma, skin .a 80 to 891 56 to 868       852/900
(94 %)
22 diff
(97.6 %id)
DA609367   .a 80 to 600 33 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
TI_57199579   .a 80 to 885 88 to 895       827/896
(92 %)
11 diff
(98.8 %id)
DA637223 Liver .a 80 to 609 33 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA894935 skeletal muscle .a 80 to 598 38 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB016441 esophageal, tumor tissue .a 80 to 422 38 to 380   capped   379/379
(100 %)
1 diff
(99.8 %id)
DB046031 testis .a 80 to 615 36 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DB245775 uterus, tumor tissue .a 80 to 617 44 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB252020 uterus .a 80 to 666 38 to 624   capped   623/623
(100 %)
1 diff
(99.9 %id)
DC420753 uterus .a 80 to 637 12 to 572       572/572
(100 %)
4 diff
(99.4 %id)
Z24843 leg muscle, skeletal muscle .a 84 to 384 1 to 308       308/337
(91 %)
15 diff
(95.6 %id)
BI517912 pooled colon, kidney, stomach .a 87 to 998 1 to 914       914/952
(96 %)
28 diff
(97.1 %id)
TI_45236141   .a 87 to 998 62 to 975       914/1013
(90 %)
34 diff
(96.7 %id)
AY691424 testis; liver .a 92 to 1432 1 to 1344 T31I V63A S250A N252S T253N ...     1344/1344
(100 %)
3 diff
(99.8 %id)
EL734387 mixed .a 92 to 731 1 to 640       640/643
(99 %)
2 diff
(99.7 %id)
TI_1948209357   .a 92 to 814 137 to 859   fully sequenced,   723/859
(84 %)
7 diff
(99.2 %id)
TI_1948209511   .a 92 to 796 133 to 836   fully sequenced,   704/836
(84 %)
15 diff
(98.3 %id)
TI_1948209670   .a 92 to 886 127 to 925       799/1243
(64 %)
27 diff
(97.9 %id)
TI_1948209827   .a 92 to 836 129 to 874   fully sequenced,   746/874
(85 %)
18 diff
(98.0 %id)
D79158 placenta .a 103 to 424 1 to 323       323/326
(99 %)
3 diff
(99.1 %id)
BP425661 small intestine .a 145 to 313 1 to 169     Submitted on the opposite strand 169/169
(100 %)
1 diff
(99.5 %id)
CF780826 Pooled Chondrosarcoma Tumor cells .a 169 to 885 41 to 758       720/951
(75 %)
15 diff
(98.5 %id)
AA336439 endometrium .a 177 to 548 1 to 373       371/373
(99 %)
5 diff
(98.7 %id)
T32005 uterus .a 177 to 509 1 to 340       340/340
(100 %)
7 diff
(98.0 %id)
AW955927   .a 178 to 717 1 to 541       541/630
(85 %)
13 diff
(98.0 %id)
CX869878 embryonic stem .a 255 to 889 1 to 635       635/635
(100 %)
0 diff
(100 %id)
BP256617 Kidney .a 266 to 843 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
TI_159704180   .a 277 to 1208 967 to 56       912/1082
(84 %)
30 diff
(97.3 %id)
BI869063 adenocarcinoma, cell line, Liver .a 316 to 937 1 to 623       623/623
(100 %)
1 diff
(99.9 %id)
TI_57230655   .a 316 to 937 55 to 677       623/623
(100 %)
1 diff
(99.9 %id)
BF900486 marrow .a 328 to 709 383 to 1     Submitted on the opposite strand 383/387
(98 %)
8 diff
(98.0 %id)
AW602876 breast .a 334 to 789 502 to 45       458/502
(91 %)
22 diff
(95.7 %id)
BP261087 small intestine .a 352 to 933 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BX379652 Placenta Cot 25-normalized .a 357 to 1372 1 to 1011       1011/1015
(99 %)
10 diff
(99.1 %id)
BM738923 Ascites, stomach .a 452 to 1057 1 to 610       610/618
(98 %)
14 diff
(97.8 %id)
BM760160 Ascites, stomach .a 452 to 894 1 to 443       443/443
(100 %)
0 diff
(100 %id)
AU135117 placenta .a 460 to 901 2 to 447   capped   446/455
(98 %)
11 diff
(97.6 %id)
CB113658 Liver .a 486 to 1119 1 to 635       635/635
(100 %)
4 diff
(99.4 %id)
BQ083923 stomach .a 539 to 899 1 to 361       361/361
(100 %)
0 diff
(100 %id)
AA975959 carcinoid, lung .a 584 to 929 346 to 1       346/346
(100 %)
6 diff
(98.3 %id)
CF135105 CNCAP(3)T-225 cell line, Prostate .a 632 to 1058 8 to 434       427/434
(98 %)
7 diff
(98.4 %id)
TI_154163282   .a 632 to 1343 100 to 811       712/713
(99 %)
15 diff
(97.9 %id)
BP366696 thymus .a 633 to 1215 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BU538433 adenocarcinoma, cell line, breast .a 654 to 1538 1 to 886       886/949
(93 %)
16 diff
(98.4 %id)
AW960167   .a 656 to 1280 1 to 624       624/624
(100 %)
15 diff
(97.6 %id)
AA309055 colon .a 687 to 1023 1 to 337       337/337
(100 %)
1 diff
(99.8 %id)
BE073872 breast .a 689 to 831 143 to 1     Submitted on the opposite strand 143/143
(100 %)
0 diff
(100 %id)
BX382672 Placenta Cot 25-normalized .a 715 to 1314 11 to 610   fully sequenced,   599/609
(98 %)
7 diff
(98.9 %id)
AA705363 liver and spleen .a 731 to 1195 465 to 1       463/465
(99 %)
5 diff
(99.0 %id)
TI_1948209512   .a 752 to 1431 800 to 121   fully sequenced,   678/798
(84 %)
2 diff
(99.8 %id)
TI_1948209358   .a 753 to 1431 805 to 127   fully sequenced,   679/805
(84 %)
0 diff
(100 %id)
BY799744 eye .a 754 to 1332 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BF333655 colon_normal .a 784 to 1161 1 to 377       377/387
(97 %)
14 diff
(96.4 %id)
TI_1948209828   .a 806 to 1431 769 to 135   fully sequenced,   634/768
(82 %)
23 diff
(97.1 %id)
BF173406 blood .a 813 to 1221 1 to 410       410/410
(100 %)
8 diff
(98.1 %id)
BX380838 Placenta Cot 25-normalized .a 818 to 1884 1072 to 12       1061/1072
(98 %)
9 diff
(99.2 %id)
TI_57192276   .a 824 to 1548 48 to 772       725/725
(100 %)
6 diff
(99.2 %id)
BI860703 breast, mammary adenocarcinoma, cell line .a 825 to 1548 1 to 724       724/724
(100 %)
6 diff
(99.2 %id)
AA143356   .a 853 to 1214 1 to 368       368/377
(97 %)
8 diff
(97.9 %id)
AA143369   .a 853 to 1222 1 to 382       382/384
(99 %)
12 diff
(96.9 %id)
BX379648.
matches multiple genes
Placenta Cot 25-normalized .a 890 to 1890 1000 to 1     also hits gene HSPB8 1000/1000
(100 %)
5 diff
(99.5 %id)
H60361 liver and spleen .a 894 to 1197 16 to 319       304/319
(95 %)
6 diff
(98.2 %id)
CN388101 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 903 to 1576 1 to 673       673/673
(100 %)
4 diff
(99.5 %id)
AA890032 parathyroid gland, parathyroid tumor .a 1005 to 1463 1 to 459     Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
BX346945 Placenta Cot 25-normalized .a 1052 to 1695 1 to 628       628/808
(77 %)
35 diff
(95.7 %id)
BE708316 head_neck .a 1104 to 1619 34 to 555       522/555
(94 %)
21 diff
(96.3 %id)
BX089364 multiple sclerosis lesions .a 1127 to 1342 1 to 216       216/216
(100 %)
0 diff
(100 %id)
BX351986 Placenta Cot 25-normalized .a 1163 to 1920 765 to 1       765/875
(87 %)
14 diff
(98.4 %id)
BX326312 Placenta Cot 25-normalized .a 1165 to 1923 1 to 756       756/756
(100 %)
6 diff
(99.3 %id)
AW935400 denis_drash .a 1167 to 1511 1 to 346       346/346
(100 %)
3 diff
(99.2 %id)
TI_149303558   .a 1167 to 1923 836 to 80   AAA   757/913
(82 %)
8 diff
(99.2 %id)
CR613131 Placenta Cot 25-normalized .a 1178 to 1924 1 to 747       747/747
(100 %)
0 diff
(100 %id)
BX337285 Placenta Cot 25-normalized .a 1178 to 1924 1 to 747   fully sequenced,   747/747
(100 %)
0 diff
(100 %id)
TI_149305894   .a 1184 to 1923 815 to 84   AAA   732/909
(80 %)
14 diff
(98.5 %id)
TI_154127269   .a 1184 to 1923 815 to 86   AAA   732/964
(75 %)
16 diff
(98.4 %id)
TI_149280709   .a 1191 to 1924 38 to 767     Submitted on the opposite strand 730/799
(91 %)
22 diff
(97.3 %id)
AJ711154 heart .a 1199 to 1730 1 to 532       532/532
(100 %)
2 diff
(99.7 %id)
N53726.
matches multiple genes
multiple sclerosis lesions .a 1201 to 1450 1 to 250     also hits gene GLDN 250/250
(100 %)
0 diff
(100 %id)
CA426755 cell lines, Chondrosarcoma .a 1219 to 1923 723 to 19   AAA   705/705
(100 %)
0 diff
(100 %id)
BQ772613 Chondrosarcoma Cell line .a 1220 to 1923 722 to 19   AAA   704/704
(100 %)
0 diff
(100 %id)
CD370670 Alveolar Macrophage, lung .a 1224 to 1923 716 to 19   AAA   698/698
(100 %)
1 diff
(99.9 %id)
TI_149304112   .a 1228 to 1923 780 to 85   AAA   696/696
(100 %)
1 diff
(99.9 %id)
BM981553 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1233 to 1923 709 to 19   AAA   691/691
(100 %)
3 diff
(99.6 %id)
BM978593 lung, Primary Lung Epithelial Cells .a 1234 to 1923 704 to 19   AAA   686/686
(100 %)
3 diff
(99.6 %id)
CA416997 Chondrosarcoma Cell line .a 1247 to 1923 690 to 19   AAA   674/672
(100 %)
6 diff
(99.2 %id)
BM981993 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1249 to 1923 693 to 19   AAA   675/675
(100 %)
1 diff
(99.9 %id)
BX382671 Placenta Cot 25-normalized .a 1253 to 1882 636 to 6   fully sequenced,   631/636
(99 %)
1 diff
(99.9 %id)
TI_154049475   .a 1271 to 1923 760 to 109   AAA   652/928
(70 %)
13 diff
(98.6 %id)
BI518185 pooled colon, kidney, stomach .a 1275 to 1850 614 to 25       563/724
(77 %)
13 diff
(98.3 %id)
TI_45236142   .a 1275 to 1850 614 to 25       563/724
(77 %)
13 diff
(98.3 %id)
TI_157596936   .a 1276 to 1923 738 to 88   AAA   651/1135
(57 %)
12 diff
(99.0 %id)
N41838 placenta .a 1325 to 1894 1 to 581       581/583
(99 %)
17 diff
(97.1 %id)
BX337284 Placenta Cot 25-normalized .a 1354 to 1906 551 to 1   fully sequenced,   551/551
(100 %)
3 diff
(99.5 %id)
CA413545 Chondrosarcoma Grade II, Left Pelvis .a 1358 to 1923 585 to 19   AAA   567/567
(100 %)
4 diff
(99.3 %id)
AA418460 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1359 to 1531 1 to 173   fully sequenced,   173/173
(100 %)
4 diff
(97.7 %id)
BF593630 brain, glioblastoma (pooled) .a 1378 to 1923 546 to 1       546/546
(100 %)
0 diff
(100 %id)
BJ991693 hepatoblastoma .a 1381 to 1889 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AI340318 adenocarcinoma, colon .a 1385 to 1923 540 to 1       540/544
(99 %)
1 diff
(99.9 %id)
AW052084 pooled .a 1385 to 1924 542 to 7       536/586
(91 %)
0 diff
(100 %id)
BI518359 pooled colon, kidney, stomach .a 1385 to 1872 496 to 5       492/505
(97 %)
0 diff
(100 %id)
TI_45236531   .a 1385 to 1872 496 to 5       492/505
(97 %)
0 diff
(100 %id)
BE348748 carcinoid, lung .a 1394 to 1922 530 to 1       530/530
(100 %)
1 diff
(99.9 %id)
AA687211   .a 1406 to 1778 8 to 379       372/379
(98 %)
6 diff
(98.5 %id)
AA745787 Kidney .a 1413 to 1745 345 to 3       343/345
(99 %)
0 diff
(100 %id)
AI436218 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1414 to 1923 510 to 1       510/510
(100 %)
0 diff
(100 %id)
BE222524 carcinoid, lung .a 1419 to 1922 504 to 1       504/504
(100 %)
0 diff
(100 %id)
AI984228 four pooled poorly-differentiatedadenocarcinomas, lung .a 1421 to 1923 503 to 1       503/503
(100 %)
4 diff
(99.3 %id)
AW571483 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1424 to 1924 501 to 1       501/501
(100 %)
0 diff
(100 %id)
AA043809 uterus .a 1427 to 1923 501 to 1       501/502
(99 %)
5 diff
(99.1 %id)
BE645325 pooled .a 1434 to 1923 515 to 26   AAA   490/490
(100 %)
5 diff
(99.0 %id)
AA599198 bone marrow stroma .a 1439 to 1923 484 to 1       484/484
(100 %)
1 diff
(99.8 %id)
N51941.
matches multiple genes
multiple sclerosis lesions .a 1440 to 1923 486 to 1     also hits gene GLDN 486/486
(100 %)
2 diff
(99.6 %id)
AI340098   .a 1446 to 1924 483 to 5       479/483
(99 %)
0 diff
(100 %id)
CF528852 placenta .a 1446 to 1923 495 to 18   AAA   478/478
(100 %)
0 diff
(100 %id)
BE090295 breast .a 1459 to 1825 19 to 381       363/391
(92 %)
7 diff
(98.3 %id)
F36314 pectoral muscle (after mastectomy) .a 1461 to 1741 1 to 281       281/281
(100 %)
0 diff
(100 %id)
AW182492 pooled .a 1464 to 1924 464 to 4       461/464
(99 %)
0 diff
(100 %id)
BF739941 Kidney .a 1464 to 1923 460 to 1       460/460
(100 %)
0 diff
(100 %id)
AI744530 pooled .a 1466 to 1924 463 to 6       458/463
(98 %)
0 diff
(100 %id)
AI127842 uterus .a 1467 to 1924 464 to 7       458/464
(98 %)
0 diff
(100 %id)
AI803215 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1468 to 1923 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
AI702474 Kidney .a 1470 to 1924 460 to 6       455/460
(98 %)
0 diff
(100 %id)
AI681103 carcinoid, lung .a 1471 to 1922 452 to 1       452/452
(100 %)
0 diff
(100 %id)
AI090984 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1485 to 1924 440 to 2       439/440
(99 %)
0 diff
(100 %id)
N24073 melanocyte .a 1486 to 1938 464 to 1       464/464
(100 %)
13 diff
(97.2 %id)
BE856644 pooled .a 1486 to 1924 446 to 7       440/446
(98 %)
0 diff
(100 %id)
AW242791 Kidney .a 1487 to 1923 438 to 1       438/438
(100 %)
7 diff
(98.5 %id)
AI831903 Kidney .a 1490 to 1923 433 to 1       433/433
(100 %)
5 diff
(98.9 %id)
AA678395 liver and spleen .a 1498 to 1924 424 to 2       423/447
(94 %)
0 diff
(100 %id)
AW089467 brain, tumor, 5 pooled (see description) .a 1498 to 1924 427 to 2       426/427
(99 %)
0 diff
(100 %id)
BE710302 head_neck .a 1500 to 1752 1 to 253       253/255
(99 %)
2 diff
(99.3 %id)
AI080655 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1500 to 1924 431 to 7       425/431
(98 %)
0 diff
(100 %id)
AA418418 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1501 to 1923 423 to 1   fully sequenced,   423/423
(100 %)
0 diff
(100 %id)
AI277102 adenocarcinoma, colon .a 1501 to 1923 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AW105466 ovary, tumor, 5 pooled (see description) .a 1501 to 1923 423 to 1       423/423
(100 %)
0 diff
(100 %id)
AW276355 lung, two pooled squamous cell carcinomas .a 1501 to 1924 429 to 6       424/429
(98 %)
0 diff
(100 %id)
AW276410 lung, two pooled squamous cell carcinomas .a 1502 to 1924 427 to 5       423/427
(99 %)
0 diff
(100 %id)
AA143320   .a 1507 to 1923 420 to 1       420/420
(100 %)
3 diff
(99.3 %id)
AU155838 placenta .a 1513 to 1923 412 to 1       412/414
(99 %)
8 diff
(98.1 %id)
AA626319   .a 1516 to 1924 411 to 3       409/446
(91 %)
0 diff
(100 %id)
BE464402 Kidney .a 1522 to 1924 409 to 7       403/409
(98 %)
0 diff
(100 %id)
AI261867 Kidney .a 1525 to 1924 404 to 5       400/404
(99 %)
0 diff
(100 %id)
AA781551 parathyroid gland, parathyroid tumor .a 1526 to 1924 404 to 6       399/404
(98 %)
0 diff
(100 %id)
AI694852 colon .a 1528 to 1924 396 to 1       396/396
(100 %)
1 diff
(99.8 %id)
AA143308   .a 1529 to 1923 400 to 1       400/420
(95 %)
6 diff
(98.6 %id)
BF593442 Kidney .a 1529 to 1923 409 to 12   AAA   398/398
(100 %)
3 diff
(99.3 %id)
AW275186 lung, two pooled squamous cell carcinomas .a 1531 to 1924 394 to 1       394/394
(100 %)
0 diff
(100 %id)
F32584 pectoral muscle (after mastectomy) .a 1553 to 1873 1 to 321       321/321
(100 %)
6 diff
(98.2 %id)
AA417876 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1556 to 1924 378 to 10       369/378
(97 %)
0 diff
(100 %id)
AI078241 liver and spleen .a 1561 to 1924 365 to 2       364/365
(99 %)
0 diff
(100 %id)
AA969187 pooled .a 1562 to 1924 365 to 3       363/365
(99 %)
0 diff
(100 %id)
CB178752 Pancreas, Purified pancreatic islet .a 1570 to 1922 353 to 1       353/353
(100 %)
0 diff
(100 %id)
BF433444 carcinoid, lung .a 1593 to 1924 336 to 5       332/336
(98 %)
0 diff
(100 %id)
H68701 liver and spleen .a 1606 to 1923 319 to 1       319/324
(98 %)
1 diff
(99.7 %id)
BU944883 mixed (pool of 40 RNAs) .a 1618 to 1923 1 to 306       306/773
(39 %)
2 diff
(99.8 %id)
AI346204 adenocarcinoma, colon .a 1628 to 1923 300 to 1       300/300
(100 %)
5 diff
(98.4 %id)
AI468726 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1645 to 1923 279 to 1       279/279
(100 %)
0 diff
(100 %id)
AW001819 Kidney .a 1648 to 1923 275 to 1       275/275
(100 %)
2 diff
(99.3 %id)
H59089 liver and spleen .a 1663 to 1904 247 to 1       247/258
(95 %)
4 diff
(98.5 %id)
AI864215 pooled .a 1666 to 1923 271 to 14   AAA   258/258
(100 %)
1 diff
(99.7 %id)
AI582960 adenocarcinoma, Pancreas .a 1672 to 1924 260 to 8       253/260
(97 %)
0 diff
(100 %id)
BI868589 adenocarcinoma, cell line, Liver .a 1672 to 1923 58 to 309   AAA   252/309
(81 %)
6 diff
(98.1 %id)
AA922607 adenocarcinoma, colon .a 1719 to 1921 205 to 3       203/205
(99 %)
0 diff
(100 %id)
AA845288 Spleen .a 1736 to 1924 192 to 4       189/192
(98 %)
0 diff
(100 %id)
BX340114 Placenta Cot 25-normalized .b 1 to 893 3 to 894   tiling clone, fully sequenced,   894/894
(100 %)
8 diff
(99.2 %id)
DC305788 cerebellum .b 19 to 488 1 to 471       471/471
(100 %)
2 diff
(99.6 %id)
BE298245 muscle, rhabdomyosarcoma .b 56 to 693 1 to 640       640/690
(92 %)
12 diff
(98.3 %id)
AK301830 testis .b 65 to 1593 38 to 1566   tiling clone,   1566/1566
(100 %)
4 diff
(99.8 %id)
DB459803.
matches multiple genes
testis .b 65 to 462 55 to 452     also hits gene ARSGandPRKAR1A 452/452
(100 %)
2 diff
(99.6 %id)
CD109680 Human Placenta, placenta .b 65 to 694 82 to 717       688/791
(86 %)
23 diff
(97.1 %id)
DA900612 skeletal muscle .b 65 to 592 38 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DC395535 testis .b 65 to 598 38 to 571       571/571
(100 %)
0 diff
(100 %id)
BX340113 Placenta Cot 25-normalized .b 863 to 1798 930 to 1   tiling clone, fully sequenced,   930/930
(100 %)
17 diff
(98.2 %id)
BQ889892 dorsal root ganglia .c 1 to 890 20 to 922   tiling clone,   901/983
(91 %)
32 diff
(96.8 %id)
CR626829 Placenta Cot 25-normalized .c 13 to 1898 1 to 1886 exact tiling clone,   1886/1886
(100 %)
0 diff
(100 %id)
BM928240 hepatocellular carcinoma, cell line, Liver .c 40 to 890 1 to 851       851/1105
(77 %)
15 diff
(98.7 %id)
CR603211 Placenta Cot 25-normalized .d 1 to 1802 3 to 1804 exact tiling clone,   1804/1804
(100 %)
0 diff
(100 %id)
BM905328 melanotic melanoma, skin .d 65 to 793 48 to 777       777/1063
(73 %)
8 diff
(99.3 %id)
H73220 liver and spleen .d 462 to 793 9 to 342       334/351
(95 %)
4 diff
(98.9 %id)
CR597380 Placenta Cot 25-normalized .d 609 to 1793 1 to 1185       1185/1185
(100 %)
0 diff
(100 %id)
AL529169 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 79 to 752 70 to 743   tiling clone,   743/743
(100 %)
5 diff
(99.4 %id)
AL530997 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 79 to 886 70 to 878   tiling clone,   878/1009
(87 %)
7 diff
(99.4 %id)
AL563910 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 885 to 1679 863 to 70   tiling clone,   794/934
(85 %)
11 diff
(98.9 %id)
AL563370 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 956 to 1717 766 to 4   tiling clone,   763/766
(99 %)
0 diff
(100 %id)
CK429539 eye, lacrimal gland .e 1212 to 1747 1 to 536       536/537
(99 %)
2 diff
(99.7 %id)
CX872113 embryonic stem .e 1221 to 1968 1 to 747   tiling clone,   747/747
(100 %)
1 diff
(99.9 %id)
DW452003 Liver .e 1923 to 2279 17 to 373   tiling clone,   357/373
(95 %)
6 diff
(98.4 %id)
AI525151 Prostate .e 2110 to 2452 17 to 361   tiling clone,   345/564
(61 %)
8 diff
(98.6 %id)
CV321704 placenta_normal .e 2567 to 2762 1 to 198   tiling clone,   198/198
(100 %)
12 diff
(94.0 %id)
BX504795   .e 2686 to 3317 1 to 635   tiling clone,   635/635
(100 %)
4 diff
(99.4 %id)
BI763074 pooled colon, kidney, stomach .f 1 to 826 1 to 826   tiling clone,   824/829
(99 %)
8 diff
(99.1 %id)
TI_57150301   .f 1 to 826 70 to 895       824/898
(91 %)
14 diff
(98.5 %id)
BM990552 lung, Metastatic Chondrosarcoma .f 500 to 1240 759 to 19   tiling clone, AAA   741/746
(99 %)
0 diff
(100 %id)
BX324849 Placenta Cot 25-normalized .g 1 to 704 1 to 704   tiling clone,   704/704
(100 %)
3 diff
(99.6 %id)
AL135037 melanoma (MeWo cell line) .g 518 to 1141 1 to 624   tiling clone,   624/624
(100 %)
0 diff
(100 %id)
BE697157 colon .g 1027 to 1221 1 to 196   tiling clone,   196/196
(100 %)
5 diff
(97.5 %id)
BE697091 colon .g 1030 to 1221 23 to 214       192/235
(81 %)
10 diff
(95.8 %id)
TI_57146638   .h 1 to 780 33 to 812 T31S tiling clone,   780/816
(95 %)
9 diff
(98.9 %id)
BI764142 pooled colon, kidney, stomach .h 6 to 780 1 to 775 T31S tiling clone,   775/779
(99 %)
3 diff
(99.7 %id)
CN267618 embryonic stem cells, cell lines H1, H7, andH9 .i 1 to 479 1 to 479   tiling clone,   479/479
(100 %)
2 diff
(99.6 %id)
CV422287 marrow .i 58 to 496 1 to 440       440/449
(97 %)
13 diff
(97.2 %id)
CK429169 eye, lacrimal gland .i 60 to 590 1 to 531   tiling clone,   531/531
(100 %)
0 diff
(100 %id)
CN362095 embryonic stem cells, cell lines H1, H7, andH9 .i 121 to 744 27 to 650 exact tiling clone,   624/650
(96 %)
6 diff
(99.1 %id)
BI053752 placenta_normal .i 204 to 460 268 to 14       255/268
(95 %)
0 diff
(100 %id)
DA852513 placenta .j-u 1 to 570 2 to 571   tiling clone, to resequence, capped   570/570
(100 %)
0 diff
(100 %id)
AW753462 colon .j-u 256 to 649 1 to 393   tiling clone,   393/397
(98 %)
6 diff
(98.5 %id)
AW859859 colon .j-u 277 to 624 358 to 1       358/358
(100 %)
0 diff
(100 %id)
AW859862 colon .j-u 277 to 528 252 to 1       252/252
(100 %)
4 diff
(98.5 %id)
AW862252 colon .j-u 277 to 528 252 to 1       252/252
(100 %)
0 diff
(100 %id)
BF334495 colon .j-u 277 to 629 417 to 60       358/417
(85 %)
0 diff
(100 %id)
DB211851 trachea .j-u 626 to 1170 2 to 547   tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DB209461 trachea .j-u 930 to 1415 2 to 487   capped   486/488
(99 %)
2 diff
(99.6 %id)
BU162213 leiomyosarcoma, uterus .j-u 960 to 1749 1 to 791   tiling clone,   791/795
(99 %)
4 diff
(99.5 %id)
BE143198 head_neck .j-u 1081 to 1325 1 to 245       245/245
(100 %)
3 diff
(98.8 %id)
BG403228 bladder, transitional cell papilloma, cell line .j-u 1175 to 1809 1 to 629   tiling clone,   629/631
(99 %)
13 diff
(98.0 %id)
BF367799 placenta_normal .j-u 1235 to 1748 9 to 520       512/520
(98 %)
10 diff
(98.1 %id)
AW854882 colon .j-u 1239 to 1419 13 to 191       179/191
(93 %)
6 diff
(96.9 %id)
BF367821 placenta_normal .j-u 1277 to 1710 2 to 436       435/436
(99 %)
6 diff
(98.7 %id)
BF816318 colon_ins .j-u 1291 to 1397 51 to 157       143/157
(91 %)
7 diff
(95.6 %id)
DA851749 placenta .j-u 1931 to 2493 2 to 564 H45Q P70L tiling clone, capped   563/563
(100 %)
2 diff
(99.7 %id)
H85271 melanocyte .j-u 1952 to 2112 12 to 172       161/172
(93 %)
6 diff
(96.6 %id)
DA124061 cerebellum .j-u 2415 to 2970 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
AI268878 carcinoid, lung .j-u 2465 to 2910 1 to 446     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
H26565 breast .j-u 2500 to 2877 1 to 391       391/456
(85 %)
17 diff
(96.3 %id)
T52247 fetal spleen, Spleen .j-u 2574 to 2848 1 to 291       291/334
(87 %)
22 diff
(93.5 %id)
T52258 fetal spleen, Spleen .j-u 2574 to 2796 1 to 230       230/275
(83 %)
12 diff
(95.7 %id)
BQ021751 lung, Metastatic Chondrosarcoma .j-u 2598 to 3221 642 to 19   AAA   624/624
(100 %)
1 diff
(99.9 %id)
DB328782 placenta .j-u 2686 to 3221 536 to 1   tiling clone, to resequence,   536/536
(100 %)
0 diff
(100 %id)
DB348797 trachea .j-u 2700 to 3221 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
H26566 breast .j-u 2897 to 3194 310 to 8       303/442
(68 %)
0 diff
(100 %id)
H84814 melanocyte .j-u 2954 to 3202 249 to 1       249/249
(100 %)
0 diff
(100 %id)
CN294869 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .k-u 1 to 730 1 to 730 exact tiling clone,   730/730
(100 %)
0 diff
(100 %id)
BU155792 melanotic melanoma, skin .k-u 144 to 983 1 to 852   tiling clone,   852/888
(95 %)
17 diff
(98.1 %id)
TI_157612804   .k-u 392 to 1007 709 to 90   AAA   620/825
(75 %)
24 diff
(97.1 %id)
CF527865 placenta .k-u 584 to 1007 441 to 18   tiling clone, AAA   424/424
(100 %)
2 diff
(99.6 %id)
BQ326595 colon_normal .l-u 1 to 267 8 to 275 P2S F6S M7C S8L L9F ... tiling clone,   268/276
(97 %)
6 diff
(97.9 %id)
AA330170   .l-u 35 to 331 1 to 297   tiling clone,   297/297
(100 %)
0 diff
(100 %id)
TI_154062033   .l-u 43 to 837 863 to 72   tiling clone,   792/1066
(74 %)
0 diff
(100 %id)
CA420953 Bone, Enchondroma cell line .l-u 62 to 835 772 to 1   tiling clone,   772/772
(100 %)
4 diff
(99.5 %id)
T83814 liver and spleen .l-u 98 to 386 5 to 297   fully sequenced,   293/297
(98 %)
9 diff
(97.0 %id)
H86874 eye, retina .l-u 171 to 617 13 to 467       455/468
(97 %)
14 diff
(97.1 %id)
T83651 liver and spleen .l-u 358 to 820 466 to 1   fully sequenced,   466/466
(100 %)
19 diff
(96.0 %id)
T90362 liver and spleen .l-u 403 to 816 429 to 5   tiling clone,   425/454
(93 %)
0 diff
(100 %id)
BI024169 marrow .m-u 1 to 239 27 to 266   tiling clone,   242/269
(89 %)
14 diff
(94.8 %id)
AA728919 Prostate, tumor .m-u 31 to 228 198 to 1   tiling clone,   198/198
(100 %)
0 diff
(100 %id)
BF904032 marrow .m-u 158 to 498 29 to 368   tiling clone,   340/368
(92 %)
8 diff
(97.9 %id)
BQ348570 head_neck .n 119 to 458 201 to 547 E11A V12R I13Y P14S E15* tiling clone,   479/558
(85 %)
33 diff
(94.1 %id)
FN046448 breast carcinoma .o-u 1 to 87 1 to 86 C7V F8S V10W V11L I12* tiling clone,   86/87
(98 %)
3 diff
(96.6 %id)
BX472410   Gene WIPI1, variant not shown         This clone was ignored    
AL545606 placenta, Placenta Cot 25-normalized Gene WIPI1, variant not shown       fully sequenced, This clone was ignored    
AL571251 placenta, Placenta Cot 25-normalized Gene WIPI1, variant not shown       fully sequenced, This clone was ignored    
AU144241 whole embryo, mainly head Gene WIPI1, variant not shown         Suspected internal deletion, this clone was ignored    
AU117405 whole embryo, mainly head Gene WIPI1, variant not shown       capped Suspected internal deletion, this clone was ignored    
AK000917 whole embryo, mainly head Gene WIPI1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
CV413365 placenta_normal Gene WIPI1, variant not shown         This clone was ignored    
AA210898 germinal center B cell Gene WIPI1, variant not shown         Suspected internal deletion, this clone was ignored    
AA210899 germinal center B cell Gene WIPI1, variant not shown         Suspected internal deletion, this clone was ignored    
AI352457 pooled germ cell tumors Gene WIPI1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l-u, .m-u, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI