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Gene WHSC1L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
596 representative clones for gene WHSC1L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA508602 brain .a 1 to 547 2 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
CR994850 T-Lymphocytes .a 31 to 599 1 to 569   tiling clone,   569/573
(99 %)
1 diff
(99.9 %id)
AF318339   .a 538 to 1804 1 to 1267   tiling clone, AAA   1267/1267
(100 %)
1 diff
(100.0 %id)
DA101332 cerebellum .a 628 to 1190 2 to 564   capped   563/565
(99 %)
6 diff
(99.0 %id)
BC000030 Placenta, choriocarcinoma .a 692 to 1804 1 to 1114   available from MGC, AAA   1114/1114
(100 %)
1 diff
(100.0 %id)
CB993710 placenta, pre-eclamptic placenta .a 707 to 1256 27 to 579       552/824
(66 %)
21 diff
(97.5 %id)
CD110141 placenta, pre-eclamptic placenta .a 707 to 1272 27 to 597       566/954
(59 %)
14 diff
(98.6 %id)
AF332469   .a 709 to 6139 1 to 5431 exact tiling clone,   5431/5431
(100 %)
0 diff
(100 %id)
BE278867 choriocarcinoma, placenta .a 709 to 1421 1 to 717   available from MGC,   717/717
(100 %)
18 diff
(97.5 %id)
NM_023034.1   .a 709 to 6139 1 to 5431 exact RefSeq,   5431/5431
(100 %)
0 diff
(100 %id)
BE901171 choriocarcinoma, placenta .a 712 to 1428 1 to 716       716/716
(100 %)
1 diff
(99.9 %id)
DB224467 trachea .a 715 to 1249 10 to 544   capped   535/543
(98 %)
6 diff
(98.9 %id)
BC007787 Placenta, choriocarcinoma .a 718 to 1802 1 to 1085   available from MGC, AAA   1085/1085
(100 %)
0 diff
(100 %id)
CD676194 eye, lens .a 721 to 1350 1 to 630       630/630
(100 %)
0 diff
(100 %id)
BE278094 choriocarcinoma, placenta .a 736 to 1413 1 to 678   available from MGC,   678/679
(99 %)
10 diff
(98.6 %id)
BG337361 leiomyosarcoma cell line, uterus .a 740 to 1567 1 to 838   available from MGC,   838/862
(97 %)
23 diff
(97.4 %id)
CR980720 T-Lymphocytes .a 743 to 1179 1 to 437       437/437
(100 %)
6 diff
(98.7 %id)
CT004760 T-Lymphocytes .a 747 to 1005 1 to 259       259/260
(99 %)
1 diff
(99.7 %id)
DA237775 brain .a 756 to 1299 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA414747 thalamus .a 756 to 1319 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA461249 tongue, tumor tissue .a 756 to 1233 2 to 487   capped   486/487
(99 %)
16 diff
(96.8 %id)
DR000797 fetal brain .a 759 to 1335 8 to 584       577/584
(98 %)
8 diff
(98.7 %id)
BI918317 brain .a 771 to 1301 1 to 543   available from MGC,   538/543
(99 %)
28 diff
(94.9 %id)
DB222823 trachea .a 782 to 1367 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA758637   .a 783 to 1335 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA799816 brain .a 783 to 1333 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DB013877 esophageal, tumor tissue .a 783 to 1286 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
BE545690 cervical carcinoma cell line, cervix .a 805 to 1136 1 to 335       335/695
(48 %)
4 diff
(99.5 %id)
U17906 Fibroblast, liver cell line .a 815 to 1103 291 to 1       291/291
(100 %)
8 diff
(97.3 %id)
BG026852 Bone, osteosarcoma, cell line .a 823 to 1460 101 to 755       686/1132
(60 %)
68 diff
(94.0 %id)
DA190854 amygdala .a 837 to 1430 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
CN340998 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 865 to 1408 1 to 544       544/544
(100 %)
0 diff
(100 %id)
AJ295990   .a 914 to 6150 1 to 5236 G829E tiling clone, AAA   5236/5236
(100 %)
7 diff
(99.9 %id)
AU124101   .a 1032 to 1819 2 to 790   capped   789/791
(99 %)
5 diff
(99.4 %id)
DA294845 hippocampus .a 1045 to 1600 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA104686 cerebellum .a 1094 to 1651 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BC115007 PCR rescued clones .a 1123 to 5564 1 to 4440 K408R S409V V410L A411P S412P ...     4440/4456
(99 %)
13 diff
(99.8 %id)
BC115006 PCR rescued clones .a 1129 to 5564 16 to 4451 G436R R578G C926R K1308R D1430G     4436/4467
(99 %)
13 diff
(99.8 %id)
BC115008 PCR rescued clones .a 1129 to 5564 4452 to 17 T583A Q603R V862A   Submitted on the opposite strand 4436/4463
(99 %)
5 diff
(99.9 %id)
BC101717 Brain, cerebral cortex, PCR rescued clones .a 1135 to 5638 1 to 4504 exact     4504/4504
(100 %)
0 diff
(100 %id)
BC113469 Brain, cerebral cortex, PCR rescued clones .a 1135 to 5638 1 to 4504 exact     4504/4504
(100 %)
0 diff
(100 %id)
TI_927047566   .a 1135 to 2252 48 to 1150       1107/1237
(89 %)
29 diff
(97.7 %id)
TI_927047831   .a 1135 to 2238 39 to 1135       1100/1229
(89 %)
20 diff
(98.4 %id)
TI_927047835   .a 1135 to 2142 49 to 1053       1005/1224
(82 %)
14 diff
(98.9 %id)
TI_1243022489   .a 1135 to 2254 40 to 1156       1117/1237
(90 %)
26 diff
(97.9 %id)
TI_1243022979   .a 1135 to 2292 52 to 1198       1147/1249
(91 %)
27 diff
(97.9 %id)
BM147156 leukopheresis .a 1160 to 1633 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
BC073858 Brain, anaplastic oligodendroglioma with1p/19q loss .a 1183 to 3026 1 to 1844   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1844/1844
(100 %)
5 diff
(99.8 %id)
CB241898 Human Lung Epithelial cells, lung .a 1185 to 1804 636 to 17   AAA   620/634
(97 %)
4 diff
(99.4 %id)
TI_927044273   .a 1194 to 2300 6 to 1113       1108/1243
(89 %)
23 diff
(98.2 %id)
TI_927044496   .a 1196 to 2291 11 to 1109       1099/1271
(86 %)
24 diff
(98.2 %id)
TI_1243017871   .a 1202 to 2291 16 to 1096       1081/1226
(88 %)
17 diff
(98.7 %id)
BP421051 small intestine .a 1205 to 1707 1 to 503     Submitted on the opposite strand 503/503
(100 %)
0 diff
(100 %id)
TI_159696735   .a 1209 to 1827 681 to 63       619/1068
(57 %)
0 diff
(100 %id)
CN480695 Cell Line, Chondrosarcoma .a 1209 to 1804 612 to 17   AAA   596/604
(98 %)
0 diff
(100 %id)
CV030108 mixed .a 1227 to 1833 1 to 607       607/607
(100 %)
2 diff
(99.7 %id)
BM984379 lung, Primary Lung Epithelial Cells .a 1232 to 1858 12 to 642     Submitted on the opposite strand 631/642
(98 %)
3 diff
(99.6 %id)
AI697751 carcinoid, lung .a 1244 to 1805 562 to 1       562/562
(100 %)
0 diff
(100 %id)
AI479200 Kidney .a 1248 to 1726 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
BF511656   .a 1290 to 1819 530 to 1       530/540
(98 %)
0 diff
(100 %id)
BF435843 pooled .a 1301 to 1807 505 to 1       505/505
(100 %)
5 diff
(99.1 %id)
BM785402 Ascites, stomach .a 1301 to 1805 1 to 505       505/505
(100 %)
0 diff
(100 %id)
AA927572 pooled germ cell tumors .a 1328 to 1806 478 to 1       478/478
(100 %)
2 diff
(99.6 %id)
AW082358 pooled .a 1336 to 1807 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AI621216 pooled germ cell tumors .a 1337 to 1804 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AI656205 pooled germ cell tumors .a 1339 to 1805 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
AI922498 Kidney .a 1351 to 1796 455 to 10       446/455
(98 %)
0 diff
(100 %id)
TI_927044274   .a 1359 to 2575 3 to 1219       1217/1241
(98 %)
42 diff
(96.7 %id)
TI_1243017845   .a 1365 to 2487 11 to 1134       1124/1243
(90 %)
25 diff
(98.0 %id)
TI_927044497   .a 1367 to 2542 11 to 1186       1176/1251
(94 %)
28 diff
(97.8 %id)
BG539760 lung .a 1385 to 2072 1 to 688       688/688
(100 %)
2 diff
(99.8 %id)
AW390285 stomach .a 1386 to 1888 596 to 94       503/597
(84 %)
0 diff
(100 %id)
AA629215   .a 1387 to 1495 109 to 1       109/109
(100 %)
0 diff
(100 %id)
FN067005 breast carcinoma .a 1392 to 1490 1 to 99       99/99
(100 %)
1 diff
(99.0 %id)
AA555107 adrenal adenoma, adrenal gland .a 1421 to 1805 384 to 1       384/384
(100 %)
1 diff
(99.8 %id)
BE467586 carcinoid, lung .a 1426 to 1805 381 to 1       381/381
(100 %)
3 diff
(99.3 %id)
AW593273 pooled .a 1431 to 1807 377 to 1       377/377
(100 %)
0 diff
(100 %id)
AI206263 pooled germ cell tumors .a 1458 to 1806 349 to 1       349/349
(100 %)
2 diff
(99.5 %id)
BF059146 pooled germ cell tumors .a 1458 to 1805 348 to 1       348/348
(100 %)
0 diff
(100 %id)
F31837 pectoral muscle (after mastectomy) .a 1459 to 1736 31 to 307       277/307
(90 %)
6 diff
(98.1 %id)
BF476201 Kidney .a 1464 to 1805 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AW073969 2 pooled high-grade transitional celltumors, genitourinary tract .a 1475 to 1815 341 to 1       341/341
(100 %)
0 diff
(100 %id)
FN074238 breast carcinoma .a 1485 to 1533 1 to 49       49/50
(98 %)
1 diff
(98.0 %id)
AA569721   .a 1486 to 1813 330 to 3       328/330
(99 %)
0 diff
(100 %id)
FN176557 breast carcinoma .a 1515 to 1627 1 to 113       113/113
(100 %)
3 diff
(97.4 %id)
AA721394 germinal center B cell .a 1516 to 1804 299 to 11   AAA   289/289
(100 %)
2 diff
(99.4 %id)
AA570760   .a 1518 to 1813 299 to 3       297/299
(99 %)
0 diff
(100 %id)
CA429037 Cell Line, Chondrosarcoma .a 1520 to 2246 19 to 746     Submitted on the opposite strand 726/728
(99 %)
7 diff
(99.1 %id)
BU619801 Cell Line, Chondrosarcoma .a 1521 to 1858 20 to 357     Submitted on the opposite strand 338/357
(94 %)
6 diff
(98.4 %id)
AL702951 human skeletal muscle .a 1530 to 2282 1 to 753       753/753
(100 %)
1 diff
(99.9 %id)
BQ477726 insulinoma, Pancreas .a 1530 to 2077 8 to 555       548/555
(98 %)
6 diff
(99.0 %id)
CK826156 insulinoma, Pancreas .a 1530 to 2083 7 to 560       554/560
(98 %)
6 diff
(99.0 %id)
CF265003 Brain glioblastoma .a 1537 to 2291 1 to 762       762/921
(82 %)
10 diff
(99.0 %id)
T97900 liver and spleen .a 1543 to 1807 265 to 1       265/438
(60 %)
4 diff
(99.1 %id)
DA645018   .a 1583 to 2174 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
TI_149283052   .a 1592 to 2376 862 to 82   AAA   781/808
(96 %)
21 diff
(97.5 %id)
BG149818 carcinoid, lung .a 1602 to 1808 208 to 2       207/208
(99 %)
0 diff
(100 %id)
FN089150 breast carcinoma .a 1604 to 1682 77 to 1     Submitted on the opposite strand 77/79
(97 %)
2 diff
(97.5 %id)
AI804011 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1614 to 1952 396 to 58   AAA   339/383
(88 %)
1 diff
(99.8 %id)
AW751732 colon .a 1625 to 2271 14 to 649       636/703
(90 %)
25 diff
(96.5 %id)
AA641791 germinal center B cell .a 1632 to 1874 1 to 243       243/243
(100 %)
0 diff
(100 %id)
AA917478 Kidney .a 1655 to 1805 151 to 1       151/151
(100 %)
0 diff
(100 %id)
DA767853 brain .a 1683 to 2521 2 to 847   capped   846/846
(100 %)
10 diff
(98.9 %id)
DB002665 breast, tumor tissue .a 1692 to 2261 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA273373 caudate nucleus .a 1703 to 2263 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BX480112   .a 1704 to 2202 1 to 499       499/499
(100 %)
5 diff
(99.0 %id)
CN340999 embryonic stem cells, cell lines H1, H7, andH9 .a 1714 to 2384 1 to 671       671/671
(100 %)
0 diff
(100 %id)
AA361324   .a 1722 to 1975 1 to 255       255/267
(95 %)
2 diff
(99.3 %id)
AW955428   .a 1723 to 2290 1 to 564       564/611
(92 %)
10 diff
(98.4 %id)
CK826155 insulinoma, Pancreas .a 1732 to 2367 636 to 1       636/636
(100 %)
0 diff
(100 %id)
BU618565 Cell Line, Chondrosarcoma .a 1757 to 2474 735 to 19   AAA   717/717
(100 %)
1 diff
(99.9 %id)
BM983957 lung, Primary Lung Epithelial Cells .a 1759 to 2390 634 to 4   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 631/634
(99 %)
0 diff
(100 %id)
TI_927044261   .a 1780 to 2940 11 to 1166       1156/1238
(93 %)
34 diff
(97.3 %id)
TI_927044484   .a 1782 to 2937 13 to 1161       1149/1242
(92 %)
31 diff
(97.6 %id)
BF922053 nervous_tumor .a 1782 to 2118 342 to 4     Submitted on the opposite strand 339/342
(99 %)
0 diff
(100 %id)
TI_1243017859   .a 1783 to 2941 15 to 1163       1149/1238
(92 %)
27 diff
(97.9 %id)
DB316213 brain .a 1844 to 2376 533 to 1       533/533
(100 %)
0 diff
(100 %id)
DA441664 tongue, tumor tissue .a 1872 to 2400 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
BQ477312 insulinoma, Pancreas .a 1893 to 2367 475 to 1       475/475
(100 %)
0 diff
(100 %id)
DA553321   .a 1941 to 2196 2 to 257   capped   256/256
(100 %)
0 diff
(100 %id)
AI458145 pooled .a 1952 to 2439 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AA641821 germinal center B cell .a 2021 to 2212 191 to 1       191/191
(100 %)
5 diff
(97.4 %id)
AA830496 germinal center B cell .a 2028 to 2379 365 to 14   AAA   352/352
(100 %)
7 diff
(98.1 %id)
AW369659 breast .a 2084 to 2483 428 to 30       399/428
(93 %)
1 diff
(99.8 %id)
TI_927044262   .a 2105 to 3267 1 to 1167       1167/1263
(92 %)
26 diff
(98.0 %id)
TI_927044485   .a 2111 to 3345 6 to 1245       1240/1269
(97 %)
32 diff
(97.5 %id)
TI_1243017833   .a 2118 to 3318 13 to 1214       1202/1256
(95 %)
29 diff
(97.7 %id)
BG195745   .a 2136 to 2628 1 to 494       494/503
(98 %)
5 diff
(99.1 %id)
BG208133   .a 2140 to 2630 1 to 489       489/497
(98 %)
7 diff
(98.6 %id)
BF950906 nervous_normal .a 2162 to 2481 28 to 347       320/347
(92 %)
8 diff
(97.7 %id)
R21001 whole brain .a 2197 to 2485 1 to 289       289/300
(96 %)
3 diff
(99.0 %id)
DA719665   .a 2227 to 2801 2 to 578   capped   577/580
(99 %)
3 diff
(99.5 %id)
TI_1243017861   .a 2251 to 3427 1 to 1173       1173/1230
(95 %)
24 diff
(98.1 %id)
TI_927044263   .a 2252 to 3464 1 to 1202       1203/1239
(97 %)
30 diff
(97.6 %id)
TI_927044486   .a 2252 to 3463 1 to 1215       1215/1264
(96 %)
31 diff
(97.6 %id)
AV649543 corresponding non cancerous liver tissue .a 2280 to 2883 1 to 604     Submitted on the opposite strand 604/613
(98 %)
1 diff
(99.9 %id)
BF436765 Prostate .a 2317 to 2754 554 to 118       437/554
(78 %)
0 diff
(100 %id)
AA375554 lung .a 2329 to 2532 1 to 204       204/204
(100 %)
0 diff
(100 %id)
AV749074 Pituitary .a 2354 to 2722 1 to 360       360/362
(99 %)
9 diff
(97.6 %id)
DB196301 trachea .a 2401 to 2967 2 to 568   capped   567/567
(100 %)
4 diff
(99.3 %id)
AA330316   .a 2509 to 2709 1 to 201       201/201
(100 %)
2 diff
(99.1 %id)
C18181 placenta .a 2538 to 2935 1 to 398       398/417
(95 %)
6 diff
(98.6 %id)
BF741282 bocio_tumor .a 2559 to 3092 538 to 8     Submitted on the opposite strand 531/538
(98 %)
1 diff
(99.9 %id)
TI_927044264   .a 2585 to 3667 1 to 1083       1083/1240
(87 %)
13 diff
(99.0 %id)
TI_927044487   .a 2586 to 3668 1 to 1089       1089/1234
(88 %)
16 diff
(98.8 %id)
TI_1243017835   .a 2587 to 3749 5 to 1172       1168/1242
(94 %)
17 diff
(98.7 %id)
DA832034 placenta .a 2699 to 3447 2 to 757   capped   754/756
(99 %)
11 diff
(98.6 %id)
BE172435 head_neck .a 2869 to 3066 206 to 9     Submitted on the opposite strand 198/206
(96 %)
0 diff
(100 %id)
TI_927045615   .a 2937 to 4141 1219 to 22       1148/1246
(92 %)
17 diff
(98.7 %id)
BM454976 leiomyosarcoma, uterus .a 2950 to 3983 1 to 1037       1037/1104
(93 %)
15 diff
(98.7 %id)
TI_927044265   .a 2986 to 4141 1 to 1155       1155/1250
(92 %)
28 diff
(97.8 %id)
TI_927044488   .a 2986 to 4128 1 to 1152       1152/1220
(94 %)
25 diff
(98.0 %id)
TI_1243018061   .a 3002 to 4141 1163 to 23       1139/1257
(90 %)
7 diff
(99.5 %id)
AW900689 nervous_normal .a 3099 to 3513 426 to 11       416/426
(97 %)
5 diff
(98.9 %id)
BE783500 eye, retinoblastoma .a 3139 to 3785 1 to 646   AAA   646/756
(85 %)
17 diff
(97.8 %id)
BF334260 colon .a 3297 to 3496 200 to 1       200/207
(96 %)
4 diff
(98.1 %id)
TI_1243017837   .a 3312 to 4342 6 to 1031       1026/1230
(83 %)
13 diff
(99.0 %id)
TI_927044266   .a 3330 to 4461 20 to 1145       1126/1256
(89 %)
24 diff
(98.1 %id)
TI_927044489   .a 3330 to 4034 18 to 722       705/869
(81 %)
17 diff
(98.1 %id)
BX506061   .a 3436 to 4128 1 to 693       693/693
(100 %)
2 diff
(99.8 %id)
TI_927044267   .a 3468 to 4656 14 to 1211       1198/1271
(94 %)
33 diff
(97.5 %id)
TI_1243017865   .a 3468 to 4625 17 to 1173       1157/1255
(92 %)
24 diff
(98.1 %id)
TI_927044490   .a 3469 to 4633 17 to 1198   AAA   1182/1271
(92 %)
33 diff
(97.5 %id)
DB150944 thymus .a 3594 to 4180 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
TI_927046878   .a 3632 to 4499 887 to 13       875/887
(98 %)
11 diff
(98.8 %id)
TI_927046250   .a 3761 to 4501 747 to 5       743/789
(94 %)
14 diff
(98.3 %id)
TI_1243017839   .a 3821 to 4996 4 to 1186       1183/1240
(95 %)
27 diff
(97.9 %id)
TI_927044268   .a 3832 to 4987 1 to 1171       1181/1257
(93 %)
81 diff
(93.6 %id)
TI_927044491   .a 3836 to 4984 11 to 1161       1152/1243
(92 %)
26 diff
(98.0 %id)
CR992537 T-Lymphocytes .a 3924 to 4571 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
TI_927046898   .a 3956 to 4505 554 to 7       548/562
(97 %)
7 diff
(98.8 %id)
TI_1243018435   .a 4028 to 4824 806 to 6       801/926
(86 %)
13 diff
(98.6 %id)
TI_927046877   .a 4069 to 4809 767 to 27       741/767
(96 %)
6 diff
(99.3 %id)
TI_1243017867   .a 4135 to 5382 14 to 1267       1254/1275
(98 %)
43 diff
(96.7 %id)
TI_927044269   .a 4139 to 5273 19 to 1164       1147/1268
(90 %)
29 diff
(97.8 %id)
BI091882 cervix .a 4139 to 4728 1 to 603       603/753
(80 %)
25 diff
(96.7 %id)
TI_927044492   .a 4141 to 5218 20 to 1097       1080/1248
(86 %)
31 diff
(97.6 %id)
CF265107 Brain glioblastoma .a 4151 to 5025 1 to 886       886/893
(99 %)
15 diff
(98.4 %id)
AW902934 nervous_normal .a 4164 to 4513 8 to 359       352/359
(98 %)
6 diff
(98.4 %id)
TI_927046897   .a 4174 to 4828 654 to 3       652/757
(86 %)
13 diff
(98.3 %id)
TI_927046249   .a 4310 to 4805 524 to 28       497/524
(94 %)
2 diff
(99.7 %id)
AA361570   .a 4339 to 4670 1 to 333       333/333
(100 %)
4 diff
(98.8 %id)
TI_927046880   .a 4410 to 5093 727 to 43       685/727
(94 %)
2 diff
(99.8 %id)
DB243048 stomach, tumor tissue .a 4420 to 4977 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BF897858 marrow .a 4440 to 4619 180 to 1     Submitted on the opposite strand 180/180
(100 %)
5 diff
(97.3 %id)
BF897855 marrow .a 4467 to 4619 153 to 1     Submitted on the opposite strand 153/153
(100 %)
1 diff
(99.4 %id)
TI_927047661   .a 4471 to 5640 1222 to 68       1155/1269
(91 %)
11 diff
(99.2 %id)
TI_1243017841   .a 4480 to 5639 1 to 1156       1156/1239
(93 %)
16 diff
(98.8 %id)
TI_927047839   .a 4486 to 5640 1197 to 52       1146/1217
(94 %)
23 diff
(98.2 %id)
TI_927044270   .a 4490 to 5640 11 to 1148       1138/1237
(91 %)
28 diff
(97.8 %id)
TI_927044493   .a 4492 to 5640 13 to 1162       1150/1253
(91 %)
28 diff
(97.8 %id)
TI_927046252   .a 4494 to 5131 642 to 3       640/642
(99 %)
1 diff
(99.9 %id)
TI_1243023363   .a 4505 to 5639 1209 to 73       1137/1214
(93 %)
34 diff
(97.2 %id)
BF842396 head_neck .a 4507 to 4619 113 to 1     Submitted on the opposite strand 113/113
(100 %)
0 diff
(100 %id)
TI_1243018437   .a 4523 to 5125 603 to 3       601/681
(88 %)
16 diff
(97.7 %id)
TI_1243022491   .a 4553 to 5639 1146 to 69       1078/1224
(88 %)
14 diff
(98.9 %id)
TI_927047843   .a 4573 to 5640 1138 to 56       1083/1229
(88 %)
26 diff
(97.9 %id)
TI_1243017869   .a 4664 to 5639 6 to 979       974/1169
(83 %)
10 diff
(99.2 %id)
TI_927044271   .a 4670 to 5640 10 to 982       973/1227
(79 %)
12 diff
(99.1 %id)
TI_927044494   .a 4675 to 5640 15 to 982       968/1236
(78 %)
9 diff
(99.3 %id)
BG992991 head_neck .a 4865 to 5296 450 to 19       432/450
(96 %)
0 diff
(100 %id)
CN340997 embryonic stem cells, DMSO-treated H9 cellline .a 5000 to 5710 1 to 711       711/711
(100 %)
0 diff
(100 %id)
BM988212 mixed .a 5029 to 5572 563 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 545/545
(100 %)
1 diff
(99.9 %id)
TI_927044272   .a 5088 to 5640 1 to 552       553/1224
(45 %)
7 diff
(99.5 %id)
TI_1243017843   .a 5088 to 5639 1 to 551       552/1239
(44 %)
9 diff
(99.3 %id)
TI_927044495   .a 5112 to 5640 22 to 549       528/1245
(42 %)
8 diff
(99.4 %id)
DA726002   .a 5312 to 5875 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BC143510 Brain, cerebral cortex, PCR rescued clones .b 1 to 4471 1 to 4471 exact tiling clone,   4471/4471
(100 %)
0 diff
(100 %id)
CR999805 T-Lymphocytes .b 3372 to 4201 1 to 830       830/831
(99 %)
3 diff
(99.7 %id)
BF842395 head_neck .b 3500 to 3814 315 to 1     Submitted on the opposite strand 315/315
(100 %)
1 diff
(99.7 %id)
BF897866 marrow .b 3500 to 3814 1 to 315       315/315
(100 %)
0 diff
(100 %id)
AK092166   .b 4156 to 6652 1 to 2497   tiling clone, available from FLJ,   2497/2497
(100 %)
1 diff
(100.0 %id)
DA691881   .b 4157 to 4729 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
CA418341 Bone, Human Chondrosarcoma Cell Line .b 4278 to 4989 725 to 14   AAA   712/712
(100 %)
2 diff
(99.8 %id)
AW301643 Kidney .b 4523 to 4989 478 to 12   AAA   467/467
(100 %)
3 diff
(99.4 %id)
DA736300   .b 4684 to 5455 2 to 771   capped   770/772
(99 %)
10 diff
(98.8 %id)
T06559   .b 4686 to 5008 1 to 324       324/324
(100 %)
2 diff
(99.4 %id)
BP314450 mammary gland .b 4706 to 5286 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DA027928   .b 5119 to 5662 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA219076 brain .b 5152 to 5754 2 to 605   capped   604/604
(100 %)
2 diff
(99.7 %id)
CN294143 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 5345 to 5857 1 to 513       513/513
(100 %)
0 diff
(100 %id)
BQ954882 sciatic nerve .b 5393 to 6268 1 to 876       876/876
(100 %)
9 diff
(99.0 %id)
BI911452 leukocyte .b 5394 to 6039 31 to 673       643/673
(95 %)
6 diff
(99.2 %id)
TI_57232297   .b 5394 to 6039 31 to 673       643/673
(95 %)
6 diff
(99.2 %id)
DB278334 uterus .b 5437 to 5943 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
BE006105 breast_normal .b 5528 to 6026 501 to 2     Submitted on the opposite strand 500/509
(98 %)
0 diff
(100 %id)
BQ267558 insulinoma, Pancreas .b 5575 to 5997 430 to 8     Submitted on the opposite strand 423/430
(98 %)
0 diff
(100 %id)
BE932148 head_neck .b 5682 to 6186 509 to 5       505/509
(99 %)
0 diff
(100 %id)
DA405198 thalamus .b 5713 to 6273 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA571348 whole embryo, mainly head .b 5715 to 6538 2 to 826   capped   825/835
(98 %)
8 diff
(99.1 %id)
CB128548 cervix, Uterine .b 5844 to 6499 1 to 656       656/656
(100 %)
1 diff
(99.9 %id)
DA313067 hippocampus .b 5851 to 6391 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA122959 cerebellum .b 5917 to 6479 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BX501365 Liver .b 5974 to 6658 1 to 684       684/684
(100 %)
1 diff
(99.9 %id)
AK023534 placenta .b 6000 to 8076 1 to 2076   tiling clone, available from FLJ,   2076/2076
(100 %)
7 diff
(99.7 %id)
AU136122 placenta .b 6001 to 6699 2 to 712   capped   711/725
(98 %)
20 diff
(97.3 %id)
BU192686 eye, retinoblastoma .b 6002 to 6905 11 to 918   tiling clone,   908/921
(98 %)
6 diff
(99.4 %id)
DA110688 cerebellum .b 6071 to 6626 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA184974 amygdala .b 6077 to 6548 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DB241274 trachea .b 6077 to 6672 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DB292416 uterus .b 6106 to 6697 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DB323152   .b 6114 to 6652 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
AW027776 Kidney .b 6126 to 6345 220 to 1       220/220
(100 %)
3 diff
(98.7 %id)
DA794425 brain .b 6143 to 6696 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AA766279 germinal center B cell .b 6146 to 6661 514 to 1       514/517
(99 %)
2 diff
(99.7 %id)
DA454363 tongue, tumor tissue .b 6147 to 6713 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
AI570381 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 6162 to 6671 511 to 2       510/511
(99 %)
0 diff
(100 %id)
DA402480 thalamus .b 6207 to 6773 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BX953365   .b 6259 to 6744 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
DA774594 brain .b 6302 to 6851 2 to 551   capped   550/551
(99 %)
1 diff
(99.9 %id)
DA959503 Spleen .b 6302 to 6853 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA186568 amygdala .b 6391 to 6915 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DB287553 uterus .b 6413 to 6879 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA338286 hippocampus .b 6418 to 7008 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DA098756 cerebellum .b 6426 to 6966 2 to 542   capped, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 541/541
(100 %)
3 diff
(99.5 %id)
DA320991 hippocampus .b 6437 to 7004 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA318969 hippocampus .b 6438 to 7020 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA324574 hippocampus .b 6443 to 6959 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA019823   .b 6444 to 7015 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA109176 cerebellum .b 6459 to 7028 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA333269 hippocampus .b 6484 to 7034 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA327632 hippocampus .b 6498 to 7034 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA335241 hippocampus .b 6498 to 7090 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA797536 brain .b 6499 to 7034 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB153667 thymus .b 6499 to 7073 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA221304 brain .b 6500 to 6876 2 to 378   capped   377/377
(100 %)
0 diff
(100 %id)
BX507284 Liver .b 6514 to 7202 1 to 689       689/689
(100 %)
3 diff
(99.6 %id)
DA122524 cerebellum .b 6530 to 7034 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DB290195 uterus .b 6657 to 7244 2 to 589   tiling clone, capped   588/588
(100 %)
0 diff
(100 %id)
DA105536 cerebellum .b 6664 to 7233 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BX508106   .b 6726 to 7417 1 to 692       692/692
(100 %)
6 diff
(99.2 %id)
DA862694 placenta .b 6883 to 7453 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA862733 placenta .b 6883 to 7448 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB143057 thymus .b 6966 to 7476 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
DA224535 brain .b 6987 to 7544 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB147639 thymus .b 7009 to 7587 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BG392735 embryonal carcinoma, cell line, testis .b 7011 to 7785 1 to 766       766/771
(99 %)
17 diff
(97.8 %id)
DB242659 stomach, tumor tissue .b 7017 to 7563 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA063533 cerebellum .b 7042 to 7606 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
ES313708 beard hair, skin .b 7059 to 7461 1 to 405       405/405
(100 %)
4 diff
(99.1 %id)
DA774776 brain .b 7120 to 7675 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA452835 tongue, tumor tissue .b 7201 to 7771 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
AU145976 whole embryo, mainly head .b 7222 to 7789 566 to 1       566/569
(99 %)
12 diff
(97.9 %id)
CN267218 embryonic stem cells, cell lines H1, H7, andH9 .b 7226 to 7960 1 to 736       736/736
(100 %)
2 diff
(99.8 %id)
DB142553 thymus .b 7252 to 7784 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
BU934749 mixed (pool of 40 RNAs) .b 7462 to 8080 1 to 620       620/624
(99 %)
7 diff
(98.9 %id)
CV572772 cornea, eye .b 7482 to 8126 1 to 645       645/645
(100 %)
0 diff
(100 %id)
BG150264 pooled germ cell tumors .b 7504 to 8075 574 to 2       573/574
(99 %)
0 diff
(100 %id)
BG150254 pooled germ cell tumors .b 7509 to 8075 568 to 2       567/568
(99 %)
0 diff
(100 %id)
BM723587 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 7520 to 7689 1 to 170       170/170
(100 %)
0 diff
(100 %id)
BM930539 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 7520 to 7689 1 to 170       170/170
(100 %)
0 diff
(100 %id)
BG150545 pooled germ cell tumors .b 7619 to 8075 458 to 2       457/458
(99 %)
0 diff
(100 %id)
DA515462 brain .b 7670 to 8208 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
AA626212 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 7672 to 7961 1 to 290     Submitted on the opposite strand 290/290
(100 %)
0 diff
(100 %id)
AU156500 placenta .b 7712 to 8076 365 to 2       364/365
(99 %)
0 diff
(100 %id)
BG236402 blood, lymphocyte .b 7754 to 8074 321 to 1       321/321
(100 %)
3 diff
(99.1 %id)
DA694424   .b 7854 to 8420 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA530785 brain .b 7855 to 8454 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
AK025702   .b 7901 to 10312 1 to 2412   tiling clone, available from FLJ, AAA   2412/2412
(100 %)
3 diff
(99.9 %id)
R57895   .b 7960 to 8267 1 to 307       307/311
(98 %)
4 diff
(98.8 %id)
DB195335 trachea .b 8096 to 8604 2 to 511   capped   510/510
(100 %)
4 diff
(99.3 %id)
BX477896   .b 8365 to 8597 1 to 233       233/233
(100 %)
1 diff
(99.6 %id)
DB192740 ovary, tumor tissue .b 8408 to 8947 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA077505 cerebellum .b 8430 to 9006 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA254303 caudate nucleus .b 8477 to 8947 2 to 472   capped   471/480
(98 %)
1 diff
(99.8 %id)
DA348935 substantia nigra .b 8478 to 8965 2 to 489   capped   488/488
(100 %)
5 diff
(99.0 %id)
CD673119 eye, Iris .b 8495 to 8998 1 to 504       504/504
(100 %)
0 diff
(100 %id)
CN361049 embryonic stem cells, DMSO-treated H9 cellline .b 8533 to 8753 1 to 221       221/221
(100 %)
2 diff
(99.1 %id)
BG696362 skin .b 8545 to 9177 1 to 638       638/640
(99 %)
12 diff
(98.2 %id)
AI005169 pooled .b 8556 to 9006 451 to 1       451/451
(100 %)
4 diff
(99.2 %id)
AA187548   .b 8580 to 8938 1 to 358       358/358
(100 %)
1 diff
(99.8 %id)
BX473306   .b 8610 to 9321 1 to 710       710/710
(100 %)
3 diff
(99.6 %id)
AW292898   .b 8610 to 9158 22 to 570   AAA Submitted on the opposite strand 549/570
(96 %)
6 diff
(99.0 %id)
BM464423 leiomyosarcoma, uterus .b 8622 to 9516 1 to 896       896/1006
(89 %)
18 diff
(98.3 %id)
BF370138 prostate_normal .b 8625 to 8933 9 to 317       309/317
(97 %)
1 diff
(99.7 %id)
CX870035 embryonic stem .b 8627 to 9306 1 to 680       680/680
(100 %)
0 diff
(100 %id)
BP432485   .b 8631 to 8999 1 to 370       370/370
(100 %)
4 diff
(99.0 %id)
H86277 eye, retina .b 8635 to 8982 1 to 348       348/348
(100 %)
2 diff
(99.5 %id)
BY795876 eye .b 8641 to 9267 1 to 627       627/627
(100 %)
0 diff
(100 %id)
BM905170 melanotic melanoma, skin .b 8646 to 9383 27 to 776       750/1036
(72 %)
38 diff
(96.4 %id)
BM695632 eye, optic nerve .b 8656 to 9313 1 to 657   fully sequenced, Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 657/657
(100 %)
0 diff
(100 %id)
DA568870 whole embryo, mainly head .b 8673 to 9496 2 to 834   capped   833/847
(98 %)
17 diff
(98.0 %id)
BI906258 leukocyte .b 8680 to 9313 1 to 642       642/642
(100 %)
9 diff
(98.6 %id)
TI_57232139   .b 8680 to 9313 40 to 681       642/681
(94 %)
6 diff
(99.2 %id)
BG779983 adenocarcinoma, Prostate .b 8717 to 9308 40 to 636       597/636
(93 %)
6 diff
(99.1 %id)
W30680 senescent fibroblast .b 8743 to 9008 1 to 266       266/266
(100 %)
0 diff
(100 %id)
BG109493 Bone, osteosarcoma, cell line .b 8811 to 9548 1 to 737       737/914
(80 %)
25 diff
(97.3 %id)
AA248453   .b 8882 to 9051 1 to 170       170/170
(100 %)
4 diff
(97.7 %id)
BM973037 lung .b 8911 to 9607 8 to 704     Submitted on the opposite strand 697/704
(99 %)
9 diff
(98.8 %id)
DT216986 brain .b 8939 to 9607 1 to 668       668/668
(100 %)
2 diff
(99.8 %id)
Z45850 brain, total brain .b 8959 to 9283 1 to 325       325/325
(100 %)
1 diff
(99.7 %id)
AA625186 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 8978 to 9412 1 to 434       434/434
(100 %)
16 diff
(96.4 %id)
CA395517 eye, RPE/choroid .b 9001 to 9640 1 to 640       640/640
(100 %)
0 diff
(100 %id)
CA395531 eye, RPE/choroid .b 9001 to 9607 1 to 609       609/609
(100 %)
3 diff
(99.6 %id)
BG115990 duodenal adenocarcinoma, cell line, small intestine .b 9020 to 9790 1 to 773       773/1079
(71 %)
41 diff
(96.3 %id)
BG116428 duodenal adenocarcinoma, cell line, small intestine .b 9021 to 9742 1 to 714       714/950
(75 %)
22 diff
(97.7 %id)
AA625265 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9031 to 9440 1 to 409       409/409
(100 %)
1 diff
(99.8 %id)
CN361050 embryonic stem cells, DMSO-treated H9 cellline .b 9095 to 9707 9 to 621       613/621
(98 %)
6 diff
(99.1 %id)
TI_154094771   .b 9220 to 9763 655 to 114   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 542/1193
(45 %)
31 diff
(97.5 %id)
AA326458 brain, cerebellum .b 9226 to 9595 1 to 375       375/375
(100 %)
6 diff
(98.4 %id)
AW964746   .b 9227 to 9727 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
AW051568 pooled .b 9266 to 9763 508 to 11   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 498/498
(100 %)
0 diff
(100 %id)
AW243482 Kidney .b 9266 to 9765 500 to 1       500/500
(100 %)
3 diff
(99.4 %id)
AA233675 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9270 to 9661 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
AI760977 2 pooled tumors (clear cell type), Kidney .b 9272 to 9767 503 to 8       496/503
(98 %)
0 diff
(100 %id)
BM666518 eye, optic nerve .b 9283 to 9759 495 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 477/477
(100 %)
1 diff
(99.8 %id)
AW364758 denis_drash .b 9289 to 9909 1 to 620       620/625
(99 %)
6 diff
(99.1 %id)
BG112959 Bone, osteosarcoma, cell line .b 9307 to 10067 1 to 757       757/798
(94 %)
15 diff
(98.2 %id)
AI051555 liver and spleen .b 9330 to 9761 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AI056518 liver and spleen .b 9331 to 9761 431 to 2       430/431
(99 %)
0 diff
(100 %id)
CA436598 Bone, Subchondral Bone .b 9345 to 9763 437 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 419/419
(100 %)
3 diff
(99.3 %id)
N99253 senescent fibroblast .b 9362 to 9761 400 to 5       396/400
(99 %)
0 diff
(100 %id)
FN111144 breast carcinoma .b 9420 to 9522 103 to 1     Submitted on the opposite strand 103/104
(99 %)
0 diff
(100 %id)
BI222957 cervical carcinoma cell line, cervix .b 9439 to 10132 1 to 696       696/696
(100 %)
2 diff
(99.8 %id)
FN050605 breast carcinoma .b 9450 to 9550 1 to 101       101/101
(100 %)
0 diff
(100 %id)
AA256223 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9481 to 9940 1 to 460   fully sequenced,   460/460
(100 %)
1 diff
(99.8 %id)
BE504939 pooled germ cell tumors .b 9555 to 9763 212 to 4       209/212
(98 %)
0 diff
(100 %id)
FN169986 breast carcinoma .b 9596 to 9697 101 to 1     Submitted on the opposite strand 101/101
(100 %)
1 diff
(99.1 %id)
BM505742 insulinoma, Pancreas .b 9607 to 9972 8 to 373       366/373
(98 %)
6 diff
(98.4 %id)
N49355 multiple sclerosis lesions .b 9648 to 9819 1 to 172       172/172
(100 %)
1 diff
(99.5 %id)
BQ773097 Chondrosarcoma Cell line .b 9669 to 10312 662 to 19   AAA   644/644
(100 %)
0 diff
(100 %id)
FN105123 breast carcinoma .b 9670 to 9770 103 to 1     Submitted on the opposite strand 103/104
(99 %)
2 diff
(98.1 %id)
BF851031 lung_normal .b 9685 to 10088 410 to 7     Submitted on the opposite strand 404/410
(98 %)
0 diff
(100 %id)
TI_149277724   .b 9687 to 10312 752 to 128   AAA   625/629
(99 %)
14 diff
(97.8 %id)
BQ029344 lung, Metastatic Chondrosarcoma .b 9716 to 10307 610 to 19   AAA   592/592
(100 %)
0 diff
(100 %id)
DB355443 whole embryo, mainly head .b 9761 to 10312 553 to 1       553/553
(100 %)
16 diff
(97.2 %id)
AW292751   .b 9762 to 10307 562 to 18   AAA   545/545
(100 %)
1 diff
(99.9 %id)
BP395423 pancreatic islet .b 9764 to 10190 429 to 1       429/442
(97 %)
8 diff
(98.2 %id)
BP397981 pancreatic islet .b 9764 to 10142 380 to 1       380/395
(96 %)
5 diff
(98.8 %id)
BF056953 pooled germ cell tumors .b 9774 to 10310 541 to 5       537/541
(99 %)
0 diff
(100 %id)
DB348043 trachea .b 9775 to 10312 538 to 1       538/540
(99 %)
2 diff
(99.7 %id)
BE702267 nervous_normal .b 9782 to 10207 427 to 3       425/427
(99 %)
0 diff
(100 %id)
AW243103 Kidney .b 9785 to 10312 538 to 11   AAA   528/528
(100 %)
1 diff
(99.9 %id)
AW117241 pooled .b 9804 to 10313 510 to 1       510/510
(100 %)
0 diff
(100 %id)
BE702273 nervous_normal .b 9805 to 10200 414 to 20       395/414
(95 %)
0 diff
(100 %id)
AI652900 pooled germ cell tumors .b 9808 to 10314 507 to 1       507/507
(100 %)
0 diff
(100 %id)
AI972894 Prostate .b 9808 to 10313 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AW236568 pooled germ cell tumors .b 9832 to 10314 483 to 1       483/483
(100 %)
0 diff
(100 %id)
D31036   .b 9833 to 10075 1 to 242       242/242
(100 %)
1 diff
(99.6 %id)
BE677310 dorsal root ganglia .b 9839 to 10310 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AA789085 germinal center B cell .b 9841 to 10315 481 to 7   tiling clone,   475/481
(98 %)
0 diff
(100 %id)
AA744386 germinal center B cell .b 9842 to 10307 483 to 18   AAA   466/466
(100 %)
0 diff
(100 %id)
AA780224   .b 9844 to 10315 473 to 2       472/473
(99 %)
0 diff
(100 %id)
AW661967 2 pooled high-grade transitional celltumors, genitourinary tract .b 9845 to 10313 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AI041736 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9856 to 10307 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AI335732 uterus .b 9856 to 10307 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
BM931749 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 9856 to 10307 1 to 452   fully sequenced, AAA   452/452
(100 %)
0 diff
(100 %id)
N36167 melanocyte .b 9858 to 10312 457 to 1       457/457
(100 %)
2 diff
(99.6 %id)
BQ021862 placenta .b 9858 to 10307 467 to 18   AAA   450/450
(100 %)
0 diff
(100 %id)
AW084973 esophagus, squamous cell carcinoma .b 9862 to 10307 459 to 14   AAA   446/446
(100 %)
2 diff
(99.6 %id)
FN087777 breast carcinoma .b 9873 to 9977 1 to 103       103/104
(99 %)
3 diff
(97.2 %id)
AW169242 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 9874 to 10307 452 to 19   AAA   434/434
(100 %)
1 diff
(99.8 %id)
AI377291 pooled .b 9875 to 10315 442 to 2       441/442
(99 %)
0 diff
(100 %id)
AA564725 germ cell tumor .b 9879 to 10307 429 to 1       429/429
(100 %)
0 diff
(100 %id)
AI500294 anaplastic oligodendroglioma, brain .b 9881 to 10307 447 to 21   AAA   427/427
(100 %)
3 diff
(99.3 %id)
AA233563 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9893 to 10312 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AI659126 Prostate .b 9898 to 10312 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AA256165 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9910 to 10307 398 to 1   fully sequenced,   398/398
(100 %)
1 diff
(99.8 %id)
AI168095 parathyroid gland, parathyroid tumor .b 9912 to 10315 409 to 6       404/409
(98 %)
0 diff
(100 %id)
AA760919 germinal center B cell .b 9916 to 10307 409 to 18   AAA   392/392
(100 %)
2 diff
(99.5 %id)
H86278 eye, retina .b 9935 to 10180 245 to 1       245/249
(98 %)
2 diff
(99.2 %id)
AI143459 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 9942 to 10312 386 to 16   AAA   371/371
(100 %)
1 diff
(99.8 %id)
AI720468 colon .b 9943 to 10312 370 to 1       370/370
(100 %)
6 diff
(98.4 %id)
AI702920 Kidney .b 9975 to 10310 340 to 3       338/340
(99 %)
0 diff
(100 %id)
AA783047   .b 9992 to 10315 326 to 2       325/326
(99 %)
0 diff
(100 %id)
Z41487 brain, total brain .b 10002 to 10312 311 to 1       311/311
(100 %)
0 diff
(100 %id)
BM505504 insulinoma, Pancreas .b 10036 to 10312 305 to 29   AAA   277/277
(100 %)
1 diff
(99.7 %id)
AI475293 colon, moderately-differentiated adenocarcinoma .b 10048 to 10312 291 to 27   AAA   265/265
(100 %)
1 diff
(99.7 %id)
AA894477 metastatic prostate bone lesion .b 10057 to 10312 1 to 256   AAA   256/256
(100 %)
2 diff
(99.3 %id)
BM675546 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 10066 to 10307 260 to 19   fully sequenced, AAA   242/242
(100 %)
0 diff
(100 %id)
AA552626 colon, tumor .b 10208 to 10306 99 to 1       99/99
(100 %)
1 diff
(99.0 %id)
FN114440 breast carcinoma .b 10236 to 10304 69 to 2     Submitted on the opposite strand 68/69
(98 %)
0 diff
(100 %id)
AJ295991   .c 1 to 5090 1 to 5089 G829E tiling clone, AAA   5089/5089
(100 %)
7 diff
(99.9 %id)
TI_154131910   .c 4234 to 5096 941 to 90   tiling clone, AAA   852/971
(87 %)
18 diff
(98.2 %id)
AF332468   .d 1 to 3995 1 to 3995 exact tiling clone,   3995/3995
(100 %)
0 diff
(100 %id)
NM_017778.2   .d 1 to 3995 1 to 3995 exact RefSeq,   3995/3995
(100 %)
0 diff
(100 %id)
BC012059 Uterus, leiomyosarcoma .d 33 to 2848 1 to 2816 exact available from MGC, AAA   2816/2816
(100 %)
0 diff
(100 %id)
DA735617   .d 43 to 650 2 to 609   capped   608/608
(100 %)
16 diff
(97.4 %id)
BC062631 Brain, fetal, whole pooled .d 62 to 3082 1 to 3021 exact available from MGC, AAA   3021/3021
(100 %)
0 diff
(100 %id)
AJ295992   .d 206 to 3995 1 to 3790 exact     3790/3790
(100 %)
0 diff
(100 %id)
AK022560   .d 324 to 3613 1 to 3290 exact available from FLJ,   3290/3290
(100 %)
0 diff
(100 %id)
TI_1948095449   .d 519 to 1591 137 to 1208       1072/1349
(79 %)
72 diff
(94.7 %id)
TI_1948095597   .d 519 to 1437 137 to 1053       917/1320
(69 %)
31 diff
(97.7 %id)
TI_1948095750   .d 519 to 1430 140 to 1049       910/1347
(67 %)
19 diff
(98.6 %id)
TI_1948095903   .d 519 to 1582 137 to 1185     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1049/1323
(79 %)
60 diff
(95.5 %id)
AU310214 neuroblastoma .d 1174 to 1755 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
AU138209 placenta .d 1290 to 1978 2 to 693   capped   692/692
(100 %)
4 diff
(99.5 %id)
TI_1948095751   .d 1643 to 2455 947 to 125       823/1306
(63 %)
17 diff
(98.7 %id)
TI_1948095904   .d 1691 to 2455 889 to 122     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 768/1267
(60 %)
8 diff
(99.4 %id)
AK000360   .d 1702 to 3994 1 to 2294   available from FLJ, AAA   2294/2294
(100 %)
3 diff
(99.9 %id)
TI_1948095598   .d 1767 to 2455 833 to 140       694/1316
(52 %)
9 diff
(99.4 %id)
H09421 whole brain .d 1803 to 2172 1 to 381       381/437
(87 %)
29 diff
(93.4 %id)
AA129667 lung, lung carcinoma .d 1810 to 2176 1 to 364       364/366
(99 %)
9 diff
(97.6 %id)
TI_1948095450   .d 1823 to 2455 781 to 143       639/1366
(46 %)
8 diff
(99.5 %id)
CB216161 normal endometrium, mid-secretory phase,cycle day 23, uterus .d 1827 to 2437 1 to 611       611/611
(100 %)
0 diff
(100 %id)
AU134464 ovary, tumor tissue .d 1853 to 2479 2 to 628   capped   627/627
(100 %)
1 diff
(99.9 %id)
BU528365 epidermoid carcinoma, cell line, lung .d 1874 to 2783 1 to 913       913/915
(99 %)
17 diff
(98.2 %id)
AA121248   .d 2032 to 2483 1 to 462       462/462
(100 %)
10 diff
(97.9 %id)
DB025511 testis .d 2058 to 2610 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
CA430322 cell lines, Chondrosarcoma .d 2140 to 2848 727 to 19   AAA   709/709
(100 %)
3 diff
(99.6 %id)
BE882069 leiomyosarcoma, uterus .d 2154 to 2735 1 to 582       582/959
(60 %)
6 diff
(99.4 %id)
AA292324 ovarian tumor, ovary .d 2155 to 2655 1 to 501   fully sequenced,   501/501
(100 %)
0 diff
(100 %id)
BF926315 nervous_tumor .d 2156 to 2526 372 to 1     Submitted on the opposite strand 372/372
(100 %)
2 diff
(99.5 %id)
DN915599   .d 2194 to 2739 1 to 543       543/543
(100 %)
4 diff
(99.3 %id)
DN920419   .d 2194 to 2561 1 to 368       368/368
(100 %)
1 diff
(99.8 %id)
DA519719 brain .d 2231 to 2786 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BM930449 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2268 to 2854 1 to 587   fully sequenced, AAA   587/587
(100 %)
1 diff
(99.9 %id)
AI764984 Kidney .d 2273 to 2850 580 to 7       574/580
(98 %)
1 diff
(99.9 %id)
AI769473 2 pooled tumors (clear cell type), Kidney .d 2273 to 2850 584 to 7       578/584
(98 %)
1 diff
(99.9 %id)
AW450770   .d 2308 to 2851 558 to 15   AAA   544/544
(100 %)
3 diff
(99.5 %id)
BU743127 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2336 to 2854 537 to 19   fully sequenced, AAA   519/519
(100 %)
0 diff
(100 %id)
FN168050 breast carcinoma .d 2342 to 2425 1 to 85       83/93
(89 %)
2 diff
(97.9 %id)
AI627695 Kidney .d 2383 to 2848 466 to 1       466/466
(100 %)
0 diff
(100 %id)
BX453634 fetal liver, Liver .d 2385 to 3311 931 to 6       926/935
(99 %)
0 diff
(100 %id)
AI613054 Kidney .d 2390 to 2848 459 to 1       459/459
(100 %)
0 diff
(100 %id)
BU594835 mixed (pool of 40 RNAs) .d 2411 to 3230 1 to 833       833/834
(99 %)
26 diff
(96.9 %id)
AI623876 adenocarcinoma, Pancreas .d 2432 to 2848 438 to 22   AAA   417/417
(100 %)
0 diff
(100 %id)
AA830714 germinal center B cell .d 2445 to 2848 433 to 30   AAA   404/404
(100 %)
0 diff
(100 %id)
DT220499 brain .d 2488 to 3023 1 to 536       536/536
(100 %)
1 diff
(99.9 %id)
CR743364 melanocyte .d 2526 to 3218 1 to 693       693/693
(100 %)
1 diff
(99.9 %id)
BX114741 lung .d 2566 to 3039 1 to 476       476/476
(100 %)
7 diff
(98.6 %id)
F07660 brain, total brain .d 2573 to 2852 1 to 280       280/280
(100 %)
2 diff
(99.3 %id)
Z45913 brain, total brain .d 2573 to 2857 1 to 285       285/285
(100 %)
1 diff
(99.7 %id)
BI016620 lung_tumor .d 2579 to 2960 418 to 31       388/450
(86 %)
0 diff
(100 %id)
W21458 lung .d 2602 to 2822 1 to 222       222/227
(97 %)
7 diff
(97.0 %id)
AA477044 ovarian tumor, ovary .d 2604 to 3051 1 to 438       438/438
(100 %)
10 diff
(97.8 %id)
AA235469 ovarian tumor, ovary .d 2625 to 2824 200 to 1   fully sequenced,   200/200
(100 %)
3 diff
(98.5 %id)
AA810307 germinal center B cell .d 2649 to 3059 1 to 411     Submitted on the opposite strand 411/411
(100 %)
3 diff
(99.3 %id)
N91219 liver and spleen .d 2650 to 2833 1 to 184       184/184
(100 %)
0 diff
(100 %id)
AA286863 germinal center B cell .d 2655 to 2848 212 to 19   AAA Submitted on the opposite strand 194/194
(100 %)
0 diff
(100 %id)
BE502984 carcinoid, lung .d 2657 to 3165 1 to 509     Submitted on the opposite strand 509/509
(100 %)
0 diff
(100 %id)
BG009218 placenta_normal .d 2664 to 2973 310 to 1       310/310
(100 %)
2 diff
(99.4 %id)
CB143886 Liver .d 2700 to 3104 12 to 415       404/415
(97 %)
6 diff
(98.6 %id)
BQ310592 breast .d 2725 to 2912 1 to 186       186/186
(100 %)
2 diff
(99.0 %id)
CA947140 Pancreas, Purified pancreatic islet .d 2732 to 3064 28 to 360       333/360
(92 %)
6 diff
(98.4 %id)
BQ310593 breast .d 2741 to 3337 596 to 5       592/597
(99 %)
0 diff
(100 %id)
TI_149308680   .d 2741 to 3614 65 to 934     Submitted on the opposite strand 870/1057
(82 %)
12 diff
(98.9 %id)
BM979851 lung, Primary Lung Epithelial Cells .d 2748 to 3527 1 to 778     Submitted on the opposite strand 778/778
(100 %)
3 diff
(99.7 %id)
AA953708 carcinoid, lung .d 2762 to 3128 1 to 367     Submitted on the opposite strand 367/367
(100 %)
0 diff
(100 %id)
AI796924 carcinoid, lung .d 2762 to 3110 1 to 349     Submitted on the opposite strand 349/350
(99 %)
1 diff
(99.8 %id)
TI_154038979   .d 2793 to 3593 851 to 66   AAA   786/788
(99 %)
21 diff
(97.4 %id)
EB361100 eye, lens .d 2823 to 3349 527 to 1       527/529
(99 %)
2 diff
(99.7 %id)
AW016296   .d 2838 to 3130 1 to 290     Submitted on the opposite strand 290/304
(95 %)
7 diff
(97.7 %id)
BQ775470 Bone, Human Chondrosarcoma Cell Line .d 2842 to 3613 787 to 19   AAA   769/775
(99 %)
6 diff
(99.3 %id)
TI_149314734   .d 2843 to 3613 833 to 84   AAA   750/903
(83 %)
30 diff
(96.7 %id)
AA035078 uterus .d 2847 to 3239 1 to 393       393/393
(100 %)
0 diff
(100 %id)
Z19297 leg muscle, skeletal muscle .d 2849 to 3152 1 to 304       304/309
(98 %)
2 diff
(99.4 %id)
AI281955 carcinoid, lung .d 2851 to 3100 1 to 250     Submitted on the opposite strand 250/250
(100 %)
1 diff
(99.6 %id)
BE673712 carcinoid, lung .d 2854 to 3099 1 to 246     Submitted on the opposite strand 246/246
(100 %)
0 diff
(100 %id)
BF196134 carcinoid, lung .d 2854 to 3099 1 to 246     Submitted on the opposite strand 246/246
(100 %)
1 diff
(99.6 %id)
BE348545 carcinoid, lung .d 2860 to 3100 1 to 241     Submitted on the opposite strand 241/241
(100 %)
0 diff
(100 %id)
BE467254 carcinoid, lung .d 2860 to 3100 1 to 241     Submitted on the opposite strand 241/241
(100 %)
0 diff
(100 %id)
BQ006521 Chondrosarcoma, Left Pelvis .d 2871 to 3613 757 to 19   AAA   739/739
(100 %)
5 diff
(99.4 %id)
FN135118 breast carcinoma .d 2894 to 3002 109 to 1     Submitted on the opposite strand 109/109
(100 %)
0 diff
(100 %id)
TI_149278492   .d 2907 to 3615 780 to 72   AAA   709/710
(99 %)
1 diff
(99.9 %id)
TI_149294038   .d 2919 to 3613 775 to 83   AAA   693/694
(99 %)
2 diff
(99.8 %id)
BM969339 lung, Primary Lung Epithelial Cells .d 2927 to 3615 700 to 12   AAA   689/689
(100 %)
1 diff
(99.9 %id)
BM984957 lung .d 2943 to 3613 688 to 19   AAA   670/673
(99 %)
1 diff
(99.9 %id)
AA455414 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2955 to 3371 1 to 412   fully sequenced,   412/412
(100 %)
9 diff
(97.9 %id)
CA413567 Chondrosarcoma Grade II, Left Pelvis .d 3004 to 3613 628 to 19   AAA   610/610
(100 %)
2 diff
(99.7 %id)
AL134876 melanoma (MeWo cell line) .d 3007 to 3613 1 to 607   AAA   607/607
(100 %)
0 diff
(100 %id)
AA133375 lung, lung carcinoma .d 3009 to 3614 599 to 1       599/600
(99 %)
12 diff
(98.0 %id)
TI_151732862   .d 3010 to 3613 684 to 81   AAA   604/973
(62 %)
5 diff
(99.5 %id)
FN067098 breast carcinoma .d 3013 to 3107 1 to 98       98/108
(90 %)
4 diff
(96.3 %id)
CA445018 lung, Metastatic Chondrosarcoma .d 3013 to 3593 600 to 19   AAA   582/582
(100 %)
1 diff
(99.9 %id)
CB163016 Liver .d 3017 to 3305 1 to 291       291/291
(100 %)
4 diff
(98.7 %id)
BQ186962 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3017 to 3613 1 to 599   fully sequenced, AAA   599/599
(100 %)
3 diff
(99.5 %id)
N93417 lung .d 3018 to 3614 608 to 2       607/608
(99 %)
0 diff
(100 %id)
BE888163 leiomyosarcoma, uterus .d 3041 to 3608 1 to 569   AAA   569/569
(100 %)
1 diff
(99.9 %id)
CA444322 lung, Metastatic Chondrosarcoma .d 3058 to 3613 574 to 19   AAA   556/557
(99 %)
1 diff
(99.9 %id)
CB306248 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 3062 to 3613 569 to 19   AAA   551/551
(100 %)
2 diff
(99.7 %id)
AW104977 pooled .d 3074 to 3596 540 to 1       540/561
(96 %)
20 diff
(96.5 %id)
DB367925   .d 3087 to 3613 529 to 1       529/537
(98 %)
16 diff
(97.1 %id)
DB377832 placenta .d 3087 to 3602 516 to 1       516/561
(91 %)
10 diff
(98.3 %id)
BQ021753 lung, Metastatic Chondrosarcoma .d 3099 to 3604 514 to 8       507/521
(97 %)
0 diff
(100 %id)
BE897200 melanotic melanoma, skin .d 3102 to 3593 1 to 492   AAA   492/492
(100 %)
0 diff
(100 %id)
AI984081 four pooled poorly-differentiatedadenocarcinomas, lung .d 3125 to 3602 491 to 11   AAA   481/481
(100 %)
3 diff
(99.4 %id)
AW316629 brain, three pooled meningiomas .d 3126 to 3614 490 to 2       489/490
(99 %)
0 diff
(100 %id)
BQ189651 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3127 to 3613 1 to 487   AAA   487/487
(100 %)
2 diff
(99.6 %id)
TI_151734471   .d 3128 to 3613 564 to 79   AAA   486/978
(49 %)
0 diff
(100 %id)
AW275804 lung, two pooled squamous cell carcinomas .d 3135 to 3613 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
AI417520 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3138 to 3602 476 to 12   AAA   465/465
(100 %)
0 diff
(100 %id)
AA121249   .d 3139 to 3612 482 to 1       482/482
(100 %)
11 diff
(97.8 %id)
BM688428 eye, human retina .d 3153 to 3614 506 to 45     Submitted on the opposite strand 462/506
(91 %)
0 diff
(100 %id)
AI470244 pooled .d 3161 to 3613 467 to 15   AAA   453/453
(100 %)
1 diff
(99.8 %id)
BF003093 Prostate .d 3161 to 3613 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AV712745   .d 3197 to 3620 1 to 424       424/538
(78 %)
5 diff
(99.1 %id)
AW662853 pooled .d 3218 to 3614 401 to 5       397/401
(99 %)
0 diff
(100 %id)
AA725597   .d 3224 to 3614 395 to 5       391/395
(98 %)
0 diff
(100 %id)
AA732779   .d 3234 to 3596 363 to 1       363/363
(100 %)
0 diff
(100 %id)
DN920418   .d 3234 to 3613 381 to 2       380/381
(99 %)
0 diff
(100 %id)
H94651 liver and spleen .d 3234 to 3614 384 to 4       381/384
(99 %)
0 diff
(100 %id)
AA705837   .d 3235 to 3596 362 to 1       362/362
(100 %)
0 diff
(100 %id)
CK005701 brain/CNS, Human Brain - Frontal Cortex .d 3237 to 3862 1 to 625       625/634
(98 %)
3 diff
(99.6 %id)
AI245374 Kidney .d 3244 to 3614 373 to 3       371/373
(99 %)
0 diff
(100 %id)
AW138278   .d 3258 to 3613 373 to 18   AAA   356/356
(100 %)
1 diff
(99.8 %id)
BQ189161 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3258 to 3613 11 to 366   fully sequenced, AAA   356/366
(97 %)
6 diff
(98.4 %id)
TI_151731421   .d 3258 to 3613 439 to 84   AAA   356/952
(37 %)
0 diff
(100 %id)
FN079015 breast carcinoma .d 3262 to 3328 1 to 67       67/68
(98 %)
1 diff
(98.6 %id)
FN069539 breast carcinoma .d 3264 to 3324 61 to 1     Submitted on the opposite strand 61/61
(100 %)
1 diff
(98.4 %id)
AW612807 carcinoid, lung .d 3272 to 3612 343 to 1       343/343
(100 %)
2 diff
(99.5 %id)
AW193298 adenocarcinoma, Pancreas .d 3274 to 3614 349 to 9       341/349
(97 %)
0 diff
(100 %id)
AI766705 B-cell, chronic lymphotic leukemia .d 3296 to 3613 336 to 19   AAA   318/318
(100 %)
9 diff
(97.2 %id)
CK299336 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3298 to 3613 334 to 19   fully sequenced, AAA   316/316
(100 %)
0 diff
(100 %id)
CK300039 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3299 to 3613 333 to 19   fully sequenced, AAA   315/315
(100 %)
1 diff
(99.7 %id)
FN165523 breast carcinoma .d 3309 to 3406 107 to 10     Submitted on the opposite strand 98/107
(91 %)
0 diff
(100 %id)
FN107403 breast carcinoma .d 3322 to 3388 65 to 1     Submitted on the opposite strand 65/68
(95 %)
2 diff
(97.1 %id)
AA456052 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3341 to 3615 275 to 1   fully sequenced,   275/275
(100 %)
0 diff
(100 %id)
AA626934   .d 3347 to 3614 271 to 4       268/271
(98 %)
0 diff
(100 %id)
AI636294 Kidney .d 3349 to 3608 265 to 5       261/265
(98 %)
0 diff
(100 %id)
AA035495 uterus .d 3360 to 3614 259 to 4       256/265
(96 %)
0 diff
(100 %id)
H09072 whole brain .d 3389 to 3613 244 to 19   AAA   226/227
(99 %)
6 diff
(97.4 %id)
AU310215 neuroblastoma .d 3438 to 3983 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
FN082774 breast carcinoma .d 3439 to 3516 77 to 1     Submitted on the opposite strand 77/78
(98 %)
1 diff
(98.8 %id)
C01893   .d 3475 to 3613 1 to 139       139/139
(100 %)
0 diff
(100 %id)
DB372164 ovary, tumor tissue .d 3500 to 3977 478 to 1       478/480
(99 %)
1 diff
(99.8 %id)
Z41537 brain, total brain .d 3696 to 3983 288 to 1       288/288
(100 %)
0 diff
(100 %id)
F03909 brain, total brain .d 3724 to 3983 260 to 1       260/260
(100 %)
0 diff
(100 %id)
DB200886 trachea .e 1 to 593 2 to 594   tiling clone, capped   593/595
(99 %)
4 diff
(99.4 %id)
DA531205 brain .e 3 to 590 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA690662   .e 6 to 461 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA807857 brain .e 6 to 613 2 to 609   capped   608/608
(100 %)
1 diff
(99.9 %id)
BM717499 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 15 to 694 1 to 680   tiling clone,   680/680
(100 %)
0 diff
(100 %id)
CN425997 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 89 to 674 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
AU132081   .e 647 to 1345 2 to 705   tiling clone, capped   704/705
(99 %)
11 diff
(98.5 %id)
DB369088   .e 1879 to 2447 564 to 1   tiling clone,   564/568
(99 %)
11 diff
(98.1 %id)
DB082779 testis .f 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
AL832895 lymph node .f 18 to 1392 1 to 1376 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1376/1376
(100 %)
1 diff
(100.0 %id)
AW175725 breast .f 490 to 749 262 to 1       262/262
(100 %)
5 diff
(98.1 %id)
BC107734 placenta .g-u 1 to 1070 1 to 1070 exact tiling clone, AAA   1070/1070
(100 %)
3 diff
(99.8 %id)
BG623824 placenta .g-u 4 to 849 1 to 838       838/893
(93 %)
28 diff
(96.9 %id)
AJ715128 bone marrow .g-u 362 to 575 11 to 226       216/226
(95 %)
6 diff
(97.4 %id)
AA324130 brain, cerebellum .h 1 to 359 1 to 362   tiling clone,   362/362
(100 %)
4 diff
(98.9 %id)
AW962011   .h 40 to 665 1 to 626 L125X Y150F I155F I156F R160P ... tiling clone,   626/626
(100 %)
11 diff
(98.3 %id)
DB100132 testis .i 1 to 576 2 to 580 G4W G5R R6P G7R C9L ... tiling clone, capped   579/579
(100 %)
3 diff
(99.5 %id)
BX493932   .j 1 to 509 1 to 509 I21M E92K tiling clone,   509/515
(98 %)
11 diff
(97.9 %id)
BG572878 placenta .k-u 1 to 707 7 to 717 exact tiling clone,   717/717
(100 %)
7 diff
(99.1 %id)
N93921 multiple sclerosis lesions .l 1 to 480 1 to 483   tiling clone,   483/483
(100 %)
7 diff
(98.6 %id)
N62806 multiple sclerosis lesions .l 1360 to 1696 339 to 1   tiling clone,   339/339
(100 %)
2 diff
(99.5 %id)
BI052434 placenta_normal .m 1 to 214 1 to 211   tiling clone,   211/211
(100 %)
5 diff
(97.7 %id)
DA791814 brain .m 192 to 494 2 to 304   tiling clone, capped   303/303
(100 %)
5 diff
(98.4 %id)
DA446891 tongue, tumor tissue .m 362 to 854 2 to 494   tiling clone, capped   493/493
(100 %)
2 diff
(99.6 %id)
BX953476   .n 1 to 408 1 to 408 exact tiling clone,   408/408
(100 %)
2 diff
(99.6 %id)
AW999389 breast_normal .n 44 to 223 1 to 180       180/180
(100 %)
0 diff
(100 %id)
BF212558 bone marrow, from chronic myelogenous leukemia .n 53 to 564 1 to 514       514/859
(59 %)
13 diff
(98.5 %id)
FN150930 breast carcinoma .n 169 to 275 107 to 1     Submitted on the opposite strand 107/107
(100 %)
0 diff
(100 %id)
CB269119 adipose .n 192 to 554 1 to 363   tiling clone,   363/363
(100 %)
1 diff
(99.8 %id)
BU193615 testis .n 248 to 1072 1 to 838       838/838
(100 %)
16 diff
(98.1 %id)
CB158863 Liver .n 293 to 842 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
BF698617 brain, primitive neuroectoderm .n 415 to 1065 1 to 661       661/669
(98 %)
54 diff
(92.0 %id)
BF185897 brain, glioblastoma .n 427 to 1076 1 to 634       634/858
(73 %)
41 diff
(95.3 %id)
GD137438   .n 543 to 1056 518 to 5   tiling clone, AAA Submitted on the opposite strand 514/519
(99 %)
0 diff
(100 %id)
AI627818 Kidney .n 565 to 1064 2 to 501   tiling clone, Submitted on the opposite strand 500/501
(99 %)
6 diff
(98.9 %id)
R24095 placenta .n 567 to 892 1 to 339       339/350
(96 %)
16 diff
(95.5 %id)
BQ023470 placenta .n 588 to 1093 1 to 505     Submitted on the opposite strand 505/505
(100 %)
4 diff
(99.3 %id)
BF245577 brain, glioblastoma .n 615 to 1331 1 to 720       720/860
(83 %)
24 diff
(97.3 %id)
BF907149 uterus_tumor .n 650 to 774 125 to 1     Submitted on the opposite strand 125/130
(96 %)
3 diff
(97.7 %id)
AL134768 brain .n 710 to 1235 559 to 34     Submitted on the opposite strand 526/559
(94 %)
0 diff
(100 %id)
BQ084283 stomach .n 845 to 1296 1 to 452       452/452
(100 %)
0 diff
(100 %id)
AW604083 colon_normal .n 859 to 961 1 to 105       105/110
(95 %)
6 diff
(94.6 %id)
CN429840 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .n 894 to 1489 1 to 595       595/595
(100 %)
7 diff
(98.9 %id)
BM470012 melanotic melanoma, skin .n 940 to 1518 1 to 580   tiling clone, AAA   580/580
(100 %)
1 diff
(99.9 %id)
AW295099   .n 996 to 1327 1 to 332     Submitted on the opposite strand 332/338
(98 %)
5 diff
(98.6 %id)
AI761428 pooled .n 1039 to 1465 431 to 1       431/431
(100 %)
7 diff
(98.4 %id)
BU564142 mixed (pool of 40 RNAs) .n 1103 to 1519 1 to 417       417/446
(93 %)
2 diff
(99.6 %id)
AI827330 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .n 1106 to 1527 435 to 14   AAA   422/422
(100 %)
1 diff
(99.8 %id)
AW779332 Kidney .n 1118 to 1528 413 to 3       411/413
(99 %)
0 diff
(100 %id)
BM767255 Ascites, stomach .n 1161 to 1527 1 to 367   AAA   367/367
(100 %)
0 diff
(100 %id)
AW449312   .n 1170 to 1527 375 to 18   AAA   358/362
(98 %)
9 diff
(97.6 %id)
FN069051 breast carcinoma .n 1205 to 1279 74 to 1     Submitted on the opposite strand 74/75
(98 %)
1 diff
(98.7 %id)
AA741074 germinal center B cell .n 1218 to 1527 346 to 37   AAA   310/310
(100 %)
0 diff
(100 %id)
Z44512 brain, total brain .n 1229 to 1538 1 to 310       310/310
(100 %)
1 diff
(99.7 %id)
FN103582 breast carcinoma .n 1328 to 1413 90 to 1     Submitted on the opposite strand 90/94
(95 %)
3 diff
(96.9 %id)
CF136115 lymph .n 1393 to 1897 1 to 505   tiling clone,   505/505
(100 %)
11 diff
(97.9 %id)
TI_154164969   .n 1400 to 2025 75 to 700       626/869
(72 %)
29 diff
(96.7 %id)
R24044 placenta .n 1417 to 1527 129 to 19   AAA   111/113
(98 %)
0 diff
(100 %id)
AA377587 synovial membrane .n 1567 to 1815 1 to 251       251/251
(100 %)
2 diff
(99.3 %id)
AA378188 synovial membrane .n 1567 to 1902 1 to 336       336/336
(100 %)
0 diff
(100 %id)
AW957425   .n 1568 to 2058 1 to 493       493/495
(99 %)
19 diff
(96.2 %id)
DB117607 thymus .n 1665 to 2230 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AW967953   .n 1787 to 2381 1 to 597   tiling clone,   597/604
(98 %)
15 diff
(97.6 %id)
AA256773 germinal center B cell .n 1787 to 2236 1 to 450       450/450
(100 %)
0 diff
(100 %id)
AA287170 germinal center B cell .n 1787 to 2215 1 to 429       429/429
(100 %)
0 diff
(100 %id)
TI_57243017   .n 1986 to 2654 20 to 698       679/802
(84 %)
33 diff
(95.9 %id)
BI916449 brain .n 1992 to 2654 1 to 673       673/777
(86 %)
46 diff
(94.1 %id)
AA255637 germinal center B cell .n 2081 to 2242 1 to 161       161/161
(100 %)
4 diff
(97.6 %id)
CR596467 fetal liver .n 2138 to 3571 1 to 1434   tiling clone,   1434/1434
(100 %)
0 diff
(100 %id)
AL531492 brain, fetal liver, Liver, neuroblastoma cells .n 2138 to 2560 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AA262703 germinal center B cell .n 2562 to 2862 301 to 1       301/301
(100 %)
0 diff
(100 %id)
DB343760 thymus .n 3042 to 3607 571 to 1       571/571
(100 %)
5 diff
(99.2 %id)
Z40411 brain, total brain .n 3338 to 3607 270 to 1   tiling clone,   270/270
(100 %)
2 diff
(99.3 %id)
DW410411 Liver .o-u 332 to 638 317 to 10   tiling clone,   308/334
(92 %)
0 diff
(100 %id)
R67541 placenta .p-u 1 to 366 1 to 367   tiling clone, fully sequenced,   367/367
(100 %)
3 diff
(99.2 %id)
R67542 placenta .p-u 357 to 666 310 to 1 K12X K16E Y19X Y30X V33X ... tiling clone, fully sequenced,   310/310
(100 %)
7 diff
(97.8 %id)
BE070208 breast .q-u 1 to 376 1 to 377 D22R C23L P24S K25Q A26S ... tiling clone,   377/377
(100 %)
7 diff
(98.2 %id)
BF515289   .r 1 to 337 354 to 18 exact tiling clone, AAA   337/347
(97 %)
1 diff
(99.8 %id)
BQ883246 dorsal root ganglia Gene WHSC1L1, variant not shown              
98 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k-u, .l, .m, .n, .o-u, .p-u, .q-u, .r Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC