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Gene WFDC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
118 supporting clones for gene WFDC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK128711 uterus .a-u 1 to 4172 1 to 4170 R59H I74N L129S S130I I131H ... tiling clone, available from FLJ,   4170/4170
(100 %)
23 diff
(99.5 %id)
BU659215 blood .a-u 2261 to 2794 6 to 539       534/539
(99 %)
0 diff
(100 %id)
AK075061 placenta .b 1 to 1318 2 to 1319 N33D Q79R tiling clone, available from FLJ,   1319/1319
(100 %)
3 diff
(99.8 %id)
BM690379 eye, RPE and Choroid .b 3 to 673 1 to 664       664/664
(100 %)
11 diff
(98.4 %id)
CR615719 placenta .b 85 to 1300 1 to 1216 exact tiling clone,   1216/1216
(100 %)
0 diff
(100 %id)
AL540681 placenta .b 85 to 718 1 to 633   fully sequenced,   633/633
(100 %)
3 diff
(99.6 %id)
BF725477 eye, Iris .b 622 to 1132 1 to 511       511/511
(100 %)
0 diff
(100 %id)
TI_149286124   .b 650 to 1321 756 to 85   AAA   672/672
(100 %)
2 diff
(99.8 %id)
AL568536 placenta .b 657 to 1300 644 to 1   fully sequenced,   644/644
(100 %)
10 diff
(98.5 %id)
BU680950 lung .b 671 to 1321 666 to 16   AAA   651/651
(100 %)
2 diff
(99.7 %id)
TI_154007472   .b 694 to 1321 714 to 87   AAA   628/951
(66 %)
4 diff
(99.6 %id)
CA434984 lung, Metastatic Chondrosarcoma .b 694 to 1321 643 to 16   AAA   628/659
(95 %)
2 diff
(99.7 %id)
BG204805   .b 745 to 1315 1 to 571       571/606
(94 %)
22 diff
(96.4 %id)
BM663231 eye, RPE and Choroid .b 964 to 1321 375 to 18   tiling clone, AAA   358/358
(100 %)
0 diff
(100 %id)
DR005801 Prostate .c 1 to 717 7 to 723   tiling clone,   717/723
(99 %)
2 diff
(99.8 %id)
CR604862 Placenta Cot 25-normalized .c 70 to 1464 1 to 1395 exact tiling clone,   1395/1395
(100 %)
0 diff
(100 %id)
AL551837 placenta, Placenta Cot 25-normalized .c 70 to 720 1 to 651   fully sequenced,   651/651
(100 %)
2 diff
(99.7 %id)
BX355728 Placenta Cot 25-normalized .c 75 to 663 1 to 590       590/590
(100 %)
14 diff
(97.7 %id)
BU149881 melanotic melanoma, cell line, skin .c 85 to 832 1 to 758       758/912
(83 %)
20 diff
(97.9 %id)
BU185075 melanotic melanoma, cell line, skin .c 85 to 747 1 to 664       664/977
(67 %)
13 diff
(98.7 %id)
BU163313 melanotic melanoma, cell line, skin .c 85 to 661 1 to 576       576/983
(58 %)
13 diff
(98.7 %id)
BQ882066 melanotic melanoma, cell line, skin .c 85 to 564 1 to 481       481/1280
(37 %)
16 diff
(98.8 %id)
BP421148 small intestine .c 134 to 272 1 to 139     Submitted on the opposite strand 139/139
(100 %)
0 diff
(100 %id)
CD519223 White Matter .c 147 to 1000 1 to 861 G173S G203R D204*     861/887
(97 %)
8 diff
(99.1 %id)
AF302109 uterus .c 150 to 1509 1 to 1362 S166E G168R D169* AAA   1362/1362
(100 %)
2 diff
(99.9 %id)
NM_021197.2   .c 150 to 1509 1 to 1360 exact RefSeq, AAA   1360/1360
(100 %)
3 diff
(99.8 %id)
BU180048 melanotic melanoma, cell line, skin .c 155 to 879 1 to 732       732/934
(78 %)
19 diff
(98.0 %id)
BQ892278 melanotic melanoma, cell line, skin .c 155 to 657 1 to 504       504/969
(52 %)
5 diff
(99.5 %id)
BQ675951 melanotic melanoma, cell line, skin .c 156 to 749 1 to 596       596/923
(64 %)
13 diff
(98.6 %id)
BY795363 eye .c 163 to 763 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
AF169631 Prostate .c 173 to 1509 1 to 1337 K217R AAA   1337/1337
(100 %)
2 diff
(99.9 %id)
BX417737 placenta .c 177 to 1129 1 to 943 L3X R93G R94A C95A C96A ...     943/1016
(92 %)
15 diff
(98.6 %id)
CR610530 Placenta Cot 25-normalized .c 199 to 1496 1 to 1298 exact     1298/1298
(100 %)
0 diff
(100 %id)
AL545137 placenta, Placenta Cot 25-normalized .c 199 to 919 1 to 720   fully sequenced,   720/720
(100 %)
1 diff
(99.9 %id)
CB996041 placenta, pre-eclamptic placenta .c 228 to 934 24 to 734       711/821
(86 %)
12 diff
(98.6 %id)
BI757093 brain .c 229 to 888 1 to 669       669/817
(81 %)
13 diff
(98.5 %id)
TI_57221641   .c 229 to 1024 71 to 887 G76R A77R C78L Q79P A80G ...     788/887
(88 %)
71 diff
(92.0 %id)
BM544603 brain, hippocampus .c 231 to 928 1 to 703       703/1127
(62 %)
17 diff
(98.5 %id)
TI_57148405   .c 246 to 958 59 to 771       713/772
(92 %)
9 diff
(98.9 %id)
BC029159 Colon, Kidney, Stomach, adult, whole pooled .c 255 to 1509 1 to 1255 exact available from MGC, AAA   1255/1255
(100 %)
2 diff
(99.9 %id)
BI759722 pooled colon, kidney, stomach .c 255 to 958 1 to 704       704/705
(99 %)
4 diff
(99.5 %id)
BQ680460 melanotic melanoma, cell line, skin .c 259 to 744 1 to 490       490/1128
(43 %)
28 diff
(97.6 %id)
CF130883 Chondrosarcoma Lung Metastasis cell lines, lung .c 260 to 927 1 to 669       669/669
(100 %)
2 diff
(99.8 %id)
TI_154193314   .c 260 to 1010 51 to 801 L192V G203R G212V Q215H Q216R ...     751/1014
(74 %)
15 diff
(98.6 %id)
BU196737 melanotic melanoma, cell line, skin .c 261 to 882 15 to 638       624/1046
(59 %)
28 diff
(97.4 %id)
BU172204 melanotic melanoma, cell line, skin .c 270 to 826 24 to 582       559/1036
(53 %)
15 diff
(98.6 %id)
BQ681491 melanotic melanoma, cell line, skin .c 271 to 812 1 to 545       545/1006
(54 %)
20 diff
(98.1 %id)
BQ890394 melanotic melanoma, cell line, skin .c 271 to 747 1 to 477       477/1200
(39 %)
7 diff
(99.5 %id)
BM708414 eye, RPE and Choroid .c 279 to 792 1 to 514       514/514
(100 %)
2 diff
(99.7 %id)
BG564096 Liver .c 359 to 1006 1 to 658       658/785
(83 %)
31 diff
(96.1 %id)
DB475024 hippocampus .c 411 to 910 1 to 500       500/500
(100 %)
0 diff
(100 %id)
DB479980 hippocampus .c 411 to 917 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
DB482825 hippocampus .c 411 to 909 1 to 499       499/499
(100 %)
5 diff
(99.0 %id)
BG716067 brain, hypothalamus .c 574 to 1370 6 to 801       796/801
(99 %)
6 diff
(99.3 %id)
BG716246 brain, hypothalamus .c 574 to 1128 6 to 573       568/576
(98 %)
22 diff
(96.2 %id)
AL575310 placenta, Placenta Cot 25-normalized .c 690 to 1464 775 to 1   fully sequenced,   775/775
(100 %)
4 diff
(99.5 %id)
BM707536 eye, eye anterior segment .c 693 to 1079 9 to 395   fully sequenced,   387/395
(97 %)
1 diff
(99.8 %id)
CR608359 Placenta Cot 25-normalized .c 704 to 1527 1 to 824       824/824
(100 %)
0 diff
(100 %id)
AL547152 placenta, Placenta Cot 25-normalized .c 704 to 1527 1 to 823   fully sequenced,   823/823
(100 %)
2 diff
(99.8 %id)
BQ678502 melanotic melanoma, cell line, skin .c 713 to 1523 1 to 812   AAA   812/812
(100 %)
3 diff
(99.7 %id)
BX089385 liver and spleen .c 728 to 1432 1 to 705       705/705
(100 %)
2 diff
(99.8 %id)
H52970 liver and spleen .c 728 to 1124 1 to 402       402/435
(92 %)
16 diff
(96.4 %id)
AA005075 liver and spleen .c 728 to 1098 1 to 370       370/370
(100 %)
5 diff
(98.7 %id)
AI870778 anaplastic oligodendroglioma, brain .c 801 to 1523 721 to 1       720/721
(99 %)
18 diff
(97.6 %id)
BU682640 lung .c 805 to 1526 736 to 16   AAA   721/721
(100 %)
3 diff
(99.6 %id)
BU630218 cell lines, Chondrosarcoma .c 805 to 1523 733 to 15   AAA   719/719
(100 %)
2 diff
(99.8 %id)
CR595501 placenta .c 813 to 1527 1 to 715       715/715
(100 %)
0 diff
(100 %id)
BX459236 placenta .c 813 to 1527 1 to 714       714/714
(100 %)
1 diff
(99.9 %id)
BU730740 eye, RPE and Choroid .c 856 to 1523 686 to 19   AAA   668/668
(100 %)
1 diff
(99.9 %id)
AL547116 placenta, Placenta Cot 25-normalized .c 858 to 1497 641 to 1   fully sequenced,   641/641
(100 %)
25 diff
(96.1 %id)
AL571083 placenta, Placenta Cot 25-normalized .c 858 to 1496 637 to 1   fully sequenced,   637/637
(100 %)
13 diff
(98.0 %id)
AW269596 pooled .c 870 to 1527 660 to 3       658/660
(99 %)
5 diff
(99.3 %id)
AI859156 anaplastic oligodendroglioma, brain .c 886 to 1523 651 to 14   AAA   638/648
(98 %)
11 diff
(98.4 %id)
BG219547   .c 927 to 1525 1 to 599       599/621
(96 %)
8 diff
(98.8 %id)
BM703990 eye, Retina Foveal and Macular .c 928 to 1204 7 to 283   fully sequenced,   277/283
(97 %)
0 diff
(100 %id)
AA603479 normal prostate, Prostate .c 934 to 1532 600 to 1       600/600
(100 %)
3 diff
(99.5 %id)
W25322 senescent fibroblast .c 943 to 1197 1 to 257   fully sequenced,   257/257
(100 %)
1 diff
(99.7 %id)
AI940671 stomach .c 971 to 1184 1 to 215       215/216
(99 %)
9 diff
(95.9 %id)
AA150491 uterus .c 987 to 1523 540 to 1       540/540
(100 %)
5 diff
(99.1 %id)
W49762 senescent fibroblast .c 994 to 1293 1 to 299   fully sequenced,   299/299
(100 %)
1 diff
(99.7 %id)
AI271347 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1021 to 1523 505 to 1       505/505
(100 %)
3 diff
(99.5 %id)
AI885443 anaplastic oligodendroglioma, brain .c 1034 to 1532 497 to 1       497/497
(100 %)
10 diff
(98.0 %id)
BM673372 eye, eye anterior segment .c 1050 to 1523 492 to 19   fully sequenced, AAA   474/474
(100 %)
2 diff
(99.6 %id)
DB551675 hippocampus .c 1053 to 1519 1 to 467     Submitted on the opposite strand 467/467
(100 %)
0 diff
(100 %id)
DB543848 hippocampus .c 1068 to 1519 1 to 452     Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
DB548707 hippocampus .c 1069 to 1519 1 to 452     Submitted on the opposite strand 452/452
(100 %)
3 diff
(99.4 %id)
AI224935 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1077 to 1523 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AI742302 pooled .c 1077 to 1525 454 to 6       449/454
(98 %)
0 diff
(100 %id)
AI360465 pooled germ cell tumors .c 1082 to 1526 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AI201443 Prostate .c 1087 to 1523 437 to 1       437/437
(100 %)
2 diff
(99.6 %id)
AA541700 normal prostate, Prostate .c 1088 to 1523 437 to 1       437/437
(100 %)
3 diff
(99.4 %id)
BX355727 Placenta Cot 25-normalized .c 1094 to 1505 415 to 1       415/415
(100 %)
19 diff
(95.5 %id)
AW052100 pooled .c 1121 to 1527 411 to 5       407/411
(99 %)
0 diff
(100 %id)
AI289243 2 pooled tumors (clear cell type), Kidney .c 1125 to 1525 402 to 2       401/402
(99 %)
0 diff
(100 %id)
AI095726 uterus .c 1128 to 1526 413 to 15   AAA   399/399
(100 %)
2 diff
(99.5 %id)
AI199143 anaplastic oligodendroglioma, brain .c 1128 to 1523 414 to 19   AAA   396/396
(100 %)
1 diff
(99.8 %id)
AI142995 senescent fibroblast .c 1135 to 1525 396 to 6       391/396
(98 %)
0 diff
(100 %id)
AA437258.
matches multiple genes
  .c 1136 to 1533 406 to 9     also hits gene ARF6 398/406
(98 %)
0 diff
(100 %id)
AI381999 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1137 to 1526 417 to 28   AAA   390/390
(100 %)
6 diff
(98.5 %id)
AA587340 colon, colon tumor RER+ .c 1138 to 1523 417 to 32   AAA   386/386
(100 %)
1 diff
(99.8 %id)
AI568809 Prostate .c 1138 to 1525 392 to 5       388/392
(98 %)
0 diff
(100 %id)
AI190199 heart .c 1139 to 1525 388 to 2       387/388
(99 %)
0 diff
(100 %id)
AA622233 Prostate, prostate tumor .c 1140 to 1523 382 to 1       382/382
(100 %)
4 diff
(99.0 %id)
AI864577 anaplastic oligodendroglioma, brain .c 1148 to 1522 376 to 1       376/376
(100 %)
2 diff
(99.5 %id)
BM854036 stomach .c 1151 to 1504 1 to 354       354/354
(100 %)
4 diff
(98.9 %id)
AI246305 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1157 to 1527 375 to 5       371/375
(98 %)
0 diff
(100 %id)
BE645605 Prostate .c 1163 to 1523 361 to 1       361/361
(100 %)
2 diff
(99.5 %id)
BF439448 pooled .c 1164 to 1526 374 to 12   AAA   363/363
(100 %)
4 diff
(98.9 %id)
DB558595 hypothalamus .c 1165 to 1532 1 to 369     Submitted on the opposite strand 369/369
(100 %)
13 diff
(96.5 %id)
W19192 senescent fibroblast .c 1167 to 1531 371 to 1   fully sequenced,   371/371
(100 %)
7 diff
(98.2 %id)
BU729890 eye, Retina Foveal and Macular .c 1174 to 1523 364 to 15   fully sequenced, AAA   350/350
(100 %)
1 diff
(99.8 %id)
AA813612 pooled .c 1185 to 1527 345 to 3       343/345
(99 %)
0 diff
(100 %id)
AI368619 anaplastic oligodendroglioma, brain .c 1199 to 1525 328 to 2       327/328
(99 %)
0 diff
(100 %id)
H52694 liver and spleen .c 1203 to 1527 341 to 13       329/342
(96 %)
0 diff
(100 %id)
AI025573   .c 1203 to 1525 324 to 2       323/324
(99 %)
0 diff
(100 %id)
BE673070 Prostate .c 1240 to 1525 293 to 8       286/293
(97 %)
0 diff
(100 %id)
W49668 senescent fibroblast .c 1263 to 1539 284 to 1   tiling clone, fully sequenced,   284/284
(100 %)
5 diff
(98.3 %id)
BG108828 retina, Retinal Pigment Epithelium sheets .c 1276 to 1482 1 to 210       210/210
(100 %)
3 diff
(98.6 %id)
BF449060 Prostate .c 1373 to 1525 155 to 3       153/155
(98 %)
0 diff
(100 %id)
BF447098 Prostate .c 1374 to 1525 154 to 3       152/154
(98 %)
0 diff
(100 %id)
AI925090 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 1445 to 1523 79 to 1       79/79
(100 %)
0 diff
(100 %id)
DA828006 placenta .d 1 to 376 2 to 376   tiling clone, capped   375/383
(97 %)
3 diff
(99.3 %id)
BQ671964 epidermoid carcinoma, cell line, salivary gland .d 237 to 1014 1 to 792   tiling clone,   792/928
(85 %)
23 diff
(97.6 %id)
BQ670532 epidermoid carcinoma, cell line, salivary gland .d 237 to 1111 1 to 875   tiling clone,   875/877
(99 %)
13 diff
(98.6 %id)
DB372386 placenta .d 1031 to 1315 285 to 1   tiling clone,   285/285
(100 %)
2 diff
(99.3 %id)
BI667439 brain, hypothalamus .e 1 to 860 1 to 857 R2G K159R tiling clone,   857/881
(97 %)
32 diff
(96.4 %id)
TI_44343397   .e 6 to 860 87 to 938       852/962
(88 %)
28 diff
(97.1 %id)
TI_149293509   .f 1 to 952 1033 to 88 P3A R4P Q5A P6A R7P ... tiling clone, AAA   946/980
(96 %)
13 diff
(98.7 %id)
AL713785 brain Gene WFDC1, variant not shown       available from DKFZ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
DA853143 placenta Gene WFDC1, variant not shown       capped This clone was ignored    
DB042713 testis Gene WFDC1, variant not shown         This clone was ignored    
DB337968 testis Gene WFDC1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC