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Gene WDR17TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
50 supporting clones for gene WDR17 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC146812 Clones donated by RIKEN .a 1 to 4284 1 to 4284 D8E R273S G352V V353F L354Y ... tiling clone, AAA   4284/4284
(100 %)
9 diff
(99.8 %id)
NM_181265.3   .a 1 to 7358 1 to 7358 exact RefSeq,   7358/7361
(99 %)
5 diff
(100.0 %id)
DB443937 testis .a 6 to 452 1 to 448       448/448
(100 %)
4 diff
(99.2 %id)
DQ426895 retina .a 191 to 312 1 to 122       122/122
(100 %)
0 diff
(100 %id)
DQ426896 retina .a 207 to 312 1 to 106       106/106
(100 %)
0 diff
(100 %id)
BP251252 hippocampus .a 438 to 1020 1 to 583   tiling clone,   583/583
(100 %)
4 diff
(99.4 %id)
BP217743 caudate nucleus .a 679 to 1265 1 to 583   tiling clone,   583/583
(100 %)
6 diff
(99.0 %id)
AV651654 corresponding non cancerous liver tissue .a 2351 to 2909 1 to 551     Submitted on the opposite strand 551/656
(83 %)
26 diff
(96.1 %id)
AK130128   .a 2371 to 4685 1 to 2315   tiling clone, available from FLJ,   2315/2315
(100 %)
1 diff
(100.0 %id)
AA015882 eye, retina .a 2482 to 2712 1 to 231       231/241
(95 %)
2 diff
(99.2 %id)
G65596   .a 2499 to 2663 1 to 165       165/165
(100 %)
1 diff
(99.4 %id)
DB504905 hypothalamus .a 2686 to 3164 1 to 483       483/483
(100 %)
12 diff
(97.6 %id)
BM726935 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3165 to 3805 1 to 641     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 641/641
(100 %)
1 diff
(99.9 %id)
BF362141 nervous_normal .a 3388 to 3933 544 to 1       544/545
(99 %)
5 diff
(99.1 %id)
BF961761 nervous_normal .a 3397 to 3933 536 to 1       536/536
(100 %)
5 diff
(99.1 %id)
BF943170 nervous_normal .a 3468 to 3933 466 to 1     Submitted on the opposite strand 466/466
(100 %)
3 diff
(99.4 %id)
DB508868 testis .a 3646 to 4288 1 to 644     Submitted on the opposite strand 644/644
(100 %)
3 diff
(99.6 %id)
BU570941 brain, glioblastoma .a 3916 to 4714 1 to 803   tiling clone,   803/804
(99 %)
11 diff
(98.7 %id)
BU741204 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4070 to 4685 633 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 615/615
(100 %)
1 diff
(99.9 %id)
AA015883 eye, retina .a 4474 to 4684 215 to 1       215/219
(98 %)
4 diff
(98.2 %id)
BE166320 head_neck .a 4734 to 5457 9 to 727   tiling clone,   719/736
(97 %)
6 diff
(99.2 %id)
BQ882167 sympathetic trunk .a 4793 to 5640 1 to 854   tiling clone,   854/855
(99 %)
10 diff
(98.9 %id)
BQ269352 Pancreas, Purified pancreatic islet .a 5288 to 5648 1 to 361       361/361
(100 %)
8 diff
(97.8 %id)
CK825733 Pancreas, Purified pancreatic islet .a 5321 to 5887 1 to 567   tiling clone, Submitted on the opposite strand 567/567
(100 %)
0 diff
(100 %id)
BI713775 Pancreas, Purified pancreatic islet .a 5773 to 6398 1 to 626   tiling clone,   626/626
(100 %)
4 diff
(99.4 %id)
H84992 eye, retina .a 5848 to 6150 26 to 328       303/328
(92 %)
11 diff
(96.7 %id)
BC118627 PCR rescued clones .a 5920 to 6404 91 to 574       484/574
(84 %)
9 diff
(98.5 %id)
BC118549 PCR rescued clones .a 5920 to 6404 91 to 574       484/574
(84 %)
9 diff
(98.5 %id)
AA371105 Prostate .a 5948 to 6181 1 to 234       234/234
(100 %)
2 diff
(99.2 %id)
AW962890   .a 5949 to 6540 1 to 597       597/605
(98 %)
28 diff
(95.4 %id)
BM661696 eye, Retina Foveal and Macular .a 6078 to 6618 11 to 551     Submitted on the opposite strand 541/551
(98 %)
7 diff
(98.8 %id)
BM875703 insulinoma, Pancreas .a 6088 to 6653 8 to 573   tiling clone, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 566/573
(98 %)
6 diff
(99.0 %id)
BQ270403 insulinoma, Pancreas .a 6088 to 6628 8 to 548       541/548
(98 %)
6 diff
(99.0 %id)
AL712554 human skeletal muscle .a 6321 to 6899 2 to 582       581/582
(99 %)
6 diff
(99.0 %id)
BQ901063 sympathetic trunk .a 6392 to 6928 1 to 537       537/935
(57 %)
7 diff
(99.3 %id)
BQ640079 eye, retina .a 6568 to 7208 1 to 635   tiling clone,   635/635
(100 %)
2 diff
(99.7 %id)
BM875452 insulinoma, Pancreas .a 6734 to 7339 624 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 606/606
(100 %)
0 diff
(100 %id)
TI_153953000   .a 6836 to 7339 608 to 111     Submitted on the opposite strand 498/539
(92 %)
0 diff
(100 %id)
BI713506 Pancreas, Purified pancreatic islet .a 7009 to 7353 354 to 10   tiling clone,   345/354
(97 %)
0 diff
(100 %id)
BQ267492 insulinoma, Pancreas .a 7225 to 7330 106 to 1       106/106
(100 %)
0 diff
(100 %id)
NM_170710.4   .b 1 to 7526 1 to 7526 exact RefSeq,   7526/7529
(99 %)
5 diff
(100.0 %id)
AF492460 retina .b 148 to 4852 1 to 4705 A1295T tiling clone,   4705/4705
(100 %)
1 diff
(100.0 %id)
BX648508 human retina .c 1 to 4911 1 to 4905 D11G A56T I490F tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4905/4905
(100 %)
10 diff
(99.8 %id)
DB072191 testis .d 1 to 455 2 to 457   tiling clone, to resequence, capped   456/456
(100 %)
1 diff
(99.8 %id)
DB340286 testis .d 1242 to 1797 556 to 1   tiling clone, to resequence,   556/556
(100 %)
4 diff
(99.3 %id)
BM725970 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 1 to 408 1 to 408   tiling clone, fully sequenced,   408/408
(100 %)
0 diff
(100 %id)
BM680980 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 378 to 693 316 to 1   tiling clone, fully sequenced,   316/316
(100 %)
3 diff
(99.1 %id)
BF362214 nervous_normal .f 1 to 275 15 to 287   tiling clone,   273/287
(95 %)
6 diff
(98.0 %id)
BF943367 nervous_normal .f 1 to 268 266 to 1   tiling clone, Submitted on the opposite strand 266/266
(100 %)
3 diff
(98.9 %id)
BF963240 nervous_normal .f 1 to 485 14 to 497 Y19L Y20L L21V L22K Q24R ... tiling clone,   484/497
(97 %)
7 diff
(98.6 %id)
DR003687 hippocampus .g 1 to 466 9 to 474 exact tiling clone,   466/474
(98 %)
12 diff
(97.5 %id)
BX508081   .h-u 1 to 459 1 to 459 exact tiling clone,   459/459
(100 %)
0 diff
(100 %id)
AA668216   .i-u 1 to 415 415 to 1 exact tiling clone,   415/415
(100 %)
2 diff
(99.6 %id)
AK098748 brain Gene WDR17, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BP212145 cerebrum Gene WDR17, variant not shown         Suspected internal deletion, this clone was ignored    
AL046290 testis Gene WDR17, variant not shown              
AL046291 testis Gene WDR17, variant not shown              
BX954313   Gene WDR17, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C