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Gene VSX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
32 supporting clones for gene VSX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF251033 retina .a 1 to 1928 1 to 1928 exact AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1928/1930
(99 %)
5 diff
(99.8 %id)
DQ854807 retina .a 1 to 1957 1 to 1957 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1957/1957
(100 %)
0 diff
(100 %id)
NM_014588.4   .a 1 to 1930 1 to 1930 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1930/1930
(100 %)
0 diff
(100 %id)
BC126228 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 11 to 1154 1 to 1144 exact     1144/1144
(100 %)
0 diff
(100 %id)
BC136497 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 11 to 1154 1 to 1144 exact     1144/1144
(100 %)
0 diff
(100 %id)
TI_1520873743   .a 11 to 865 860 to 6       855/1295
(66 %)
0 diff
(100 %id)
TI_1520874639   .a 11 to 1146 63 to 1185 G307D S308H Q309R R310E G311A ...   Submitted on the opposite strand 1123/1248
(89 %)
17 diff
(98.7 %id)
TI_1520874265   .a 94 to 1159 1109 to 51     Submitted on the opposite strand 1059/1219
(86 %)
22 diff
(98.2 %id)
TI_2016723957   .a 99 to 1164 1114 to 46     Submitted on the opposite strand 1069/1239
(86 %)
24 diff
(98.1 %id)
TI_2016730567   .a 130 to 1164 1083 to 50     Submitted on the opposite strand 1034/1164
(88 %)
33 diff
(97.2 %id)
TI_2016724215   .a 563 to 1164 1 to 601       601/1287
(46 %)
11 diff
(99.2 %id)
BQ640533 eye, retina .a 1407 to 1927 573 to 53     Submitted on the opposite strand 521/573
(90 %)
0 diff
(100 %id)
DA124669 cerebellum .a 1425 to 1954 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DQ854812 retina .b 1 to 1366 1 to 1366 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1366/1366
(100 %)
0 diff
(100 %id)
TI_2016724849   .b 11 to 268 65 to 322     Submitted on the opposite strand 258/322
(80 %)
6 diff
(98.2 %id)
DQ854809 retina .c 1 to 1474 1 to 1474 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1474/1474
(100 %)
0 diff
(100 %id)
AV722789 hypothalamus .c 729 to 1418 1 to 682       682/691
(98 %)
19 diff
(97.3 %id)
AF251034 retina .d 1 to 927 1 to 927 exact AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 927/929
(99 %)
2 diff
(99.8 %id)
DQ854808 retina .d 1 to 929 1 to 929 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 929/929
(100 %)
0 diff
(100 %id)
NM_199425.1   .d 1 to 929 1 to 929 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 929/929
(100 %)
0 diff
(100 %id)
TI_151718658   .d 311 to 944 44 to 677     Submitted on the opposite strand 634/864
(73 %)
12 diff
(98.7 %id)
H87757 eye, retina .d 419 to 671 1 to 257     Submitted on the opposite strand 255/264
(96 %)
8 diff
(97.0 %id)
BM712470 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 430 to 951 523 to 6     Submitted on the opposite strand 518/523
(99 %)
0 diff
(100 %id)
H87056 eye, retina .d 568 to 923 362 to 1     Submitted on the opposite strand 362/362
(100 %)
6 diff
(98.4 %id)
DQ854811 retina .e 1 to 1185 1 to 1185 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1185/1185
(100 %)
0 diff
(100 %id)
DQ854810 retina .f 1 to 1293 1 to 1293 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1293/1293
(100 %)
0 diff
(100 %id)
DA981812 synovial membrane tissue from rheumatioidarthritis .g 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
BF365369 nervous_tumor .h-u 1 to 353 353 to 1 exact tiling clone,   353/353
(100 %)
0 diff
(100 %id)
BM696145 eye, human retina .h-u 247 to 638 1 to 392   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 392/392
(100 %)
0 diff
(100 %id)
DA413753 thalamus .i-u 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
DA112092 cerebellum .i-u 67 to 616 2 to 551 exact tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
AF176797   Gene VSX1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC