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Gene VPS35TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
434 supporting clones for gene VPS35 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_018206.4   .a 1 to 3282 2 to 3283 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 3283/3283
(100 %)
2 diff
(100.0 %id)
DB049686 testis .a 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA476452   .a 16 to 585 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA498851 brain .a 16 to 580 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA174097 amygdala .a 34 to 600 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA527754 brain .a 34 to 630 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA644826   .a 34 to 614 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA777496 brain .a 34 to 609 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA249884 brain .a 35 to 617 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA182656 amygdala .a 37 to 609 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA767961 brain .a 37 to 875 2 to 847   capped   846/846
(100 %)
11 diff
(98.7 %id)
DB461433 testis .a 38 to 521 1 to 484       484/484
(100 %)
0 diff
(100 %id)
DA024690   .a 39 to 617 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA086736 cerebellum .a 39 to 616 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA289851 hippocampus .a 39 to 617 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA304466 hippocampus .a 39 to 609 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA387915 thalamus .a 39 to 622 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA483398 brain .a 39 to 746 2 to 712   capped   711/711
(100 %)
3 diff
(99.6 %id)
DA486330 brain .a 39 to 604 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA498028 brain .a 39 to 616 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA555147   .a 39 to 603 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA558297   .a 39 to 606 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA697260   .a 39 to 609 2 to 572   capped   571/575
(99 %)
3 diff
(99.5 %id)
DA750111   .a 39 to 609 2 to 572   capped   571/574
(99 %)
3 diff
(99.5 %id)
DA777479 brain .a 39 to 612 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA777482 brain .a 39 to 612 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA789735 brain .a 39 to 609 2 to 572   capped   571/575
(99 %)
3 diff
(99.5 %id)
DB084790 testis .a 39 to 611 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB128241 thymus .a 39 to 608 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB210234 trachea .a 39 to 662 2 to 625   capped   624/626
(99 %)
1 diff
(99.9 %id)
DA132540 alzheimer cortex .a 41 to 606 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB454790 testis .a 44 to 513 1 to 470       470/470
(100 %)
0 diff
(100 %id)
DB473880 hippocampus .a 44 to 521 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
DA042195 bladder .a 45 to 639 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA292361 hippocampus .a 45 to 630 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA488707 brain .a 45 to 611 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB173520 kidney, tumor tissue .a 45 to 646 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
TI_44349923   .a 48 to 721 121 to 796   AAA   676/805
(83 %)
22 diff
(97.3 %id)
AF175265 colon .a 50 to 2748 9 to 2707 T168P AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 2699/2707
(99 %)
7 diff
(99.8 %id)
DA178087 amygdala .a 50 to 628 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA299442 hippocampus .a 50 to 614 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA557942   .a 50 to 632 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB201538 trachea .a 50 to 625 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB175827 kidney, tumor tissue .a 51 to 617 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AL136888 testis .a 52 to 2748 1 to 2697 A42S available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 2697/2697
(100 %)
2 diff
(100.0 %id)
BC093036 Placenta, normal .a 54 to 2748 1 to 2695 exact tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 2695/2695
(100 %)
1 diff
(100.0 %id)
DA389539 thalamus .a 54 to 622 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BP296719   .a 54 to 626 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BP315113 mammary gland .a 54 to 635 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA064306 cerebellum .a 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA128502 cerebellum .a 55 to 642 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA269522 caudate nucleus .a 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA277057 corpus callosum .a 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BX377177 Placenta Cot 25-normalized .a 55 to 1010 1 to 956       956/956
(100 %)
11 diff
(98.9 %id)
DR156484 human embryonic stem cells differentiated toan early endodermal cell type .a 55 to 754 1 to 700       700/700
(100 %)
0 diff
(100 %id)
DA657742   .a 55 to 626 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA750915   .a 55 to 635 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA778191 brain .a 55 to 638 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA785763 brain .a 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB033134 testis .a 55 to 638 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BP378317 uterus .a 58 to 634 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DA955772 Spleen .a 59 to 626 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB476539 hippocampus .a 60 to 559 1 to 500       500/500
(100 %)
0 diff
(100 %id)
DA272103 caudate nucleus .a 61 to 695 2 to 636   capped   635/635
(100 %)
0 diff
(100 %id)
BP198809 brain .a 63 to 642 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP199763 brain .a 63 to 643 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP205303 coronary artery .a 63 to 644 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP212970 cerebrum .a 63 to 638 1 to 576       576/576
(100 %)
0 diff
(100 %id)
CD676147 eye, lens .a 63 to 672 1 to 610       610/610
(100 %)
0 diff
(100 %id)
BP277665 Kidney .a 63 to 643 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP376844 uterus .a 63 to 631 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DA148144 amygdala .a 64 to 644 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA955445 Spleen .a 64 to 633 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB471699 hippocampus .a 65 to 504 1 to 440       440/440
(100 %)
0 diff
(100 %id)
DB476372 hippocampus .a 65 to 553 1 to 489       489/489
(100 %)
0 diff
(100 %id)
TI_44350935   .a 65 to 793 126 to 857       732/902
(81 %)
22 diff
(97.6 %id)
DA719940   .a 68 to 646 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BM147919 leukopheresis .a 68 to 587 1 to 520       520/520
(100 %)
5 diff
(99.1 %id)
DB458815 testis .a 71 to 511 1 to 441       441/441
(100 %)
0 diff
(100 %id)
DB478592 hippocampus .a 71 to 537 1 to 467       467/467
(100 %)
0 diff
(100 %id)
AF191298 lung .a 72 to 2756 1 to 2684 exact     2684/2684
(100 %)
5 diff
(99.9 %id)
AK001614   .a 73 to 2748 22 to 2697 R526G K694E available from FLJ,   2676/2676
(100 %)
3 diff
(99.9 %id)
BM542572 embryonal carcinoma, cell line, testis .a 73 to 896 1 to 825   AAA   825/984
(83 %)
19 diff
(98.1 %id)
DB200124 trachea .a 73 to 638 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BQ929887 leiomyosarcoma, uterus .a 74 to 1002 1 to 935       935/935
(100 %)
18 diff
(98.1 %id)
DA348611 substantia nigra .a 75 to 650 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA497595 brain .a 77 to 650 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BP225508   .a 79 to 660 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_44000954   .a 79 to 763 91 to 775       685/775
(88 %)
11 diff
(98.6 %id)
AK223218 stomach mucosa .a 81 to 2752 1 to 2672 L510S     2672/2672
(100 %)
5 diff
(99.9 %id)
DB479628 hippocampus .a 81 to 567 1 to 487       487/487
(100 %)
1 diff
(99.8 %id)
BP257520 heart .a 81 to 660 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP257874 heart .a 81 to 661 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP259061 heart .a 81 to 649 1 to 569       569/569
(100 %)
0 diff
(100 %id)
TI_45215944   .a 81 to 818 88 to 829       742/901
(82 %)
21 diff
(97.7 %id)
DA393626 thalamus .a 82 to 650 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA433472 tongue, tumor tissue .a 82 to 955 2 to 886   capped   885/892
(99 %)
17 diff
(98.1 %id)
DA472147   .a 82 to 818 2 to 737   capped   736/739
(99 %)
2 diff
(99.8 %id)
DA500429 brain .a 82 to 652 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BP375035 umbilical cord .a 82 to 663 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA145955 amygdala .a 84 to 668 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA614603   .a 85 to 681 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB496362 hypothalamus .a 89 to 558 1 to 470       470/470
(100 %)
0 diff
(100 %id)
DB500469 hypothalamus .a 89 to 587 1 to 499       499/499
(100 %)
0 diff
(100 %id)
AF183418 pheochromocytoma .a 91 to 2748 1 to 2658 exact AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 2658/2658
(100 %)
1 diff
(100.0 %id)
CN345924 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 92 to 868 1 to 778       778/778
(100 %)
3 diff
(99.7 %id)
BM467705 leiomyosarcoma, uterus .a 92 to 1109 1 to 1020       1020/1113
(91 %)
13 diff
(98.9 %id)
BQ921207 leiomyosarcoma, uterus .a 92 to 989 1 to 908       908/908
(100 %)
17 diff
(98.2 %id)
TI_1948142932   .a 94 to 1009 120 to 1039       923/1153
(80 %)
28 diff
(97.6 %id)
BU787483 insulinoma, Pancreas .a 95 to 748 1 to 655     Submitted on the opposite strand 655/655
(100 %)
1 diff
(99.9 %id)
TI_1948141920   .a 96 to 821 130 to 857       730/1330
(54 %)
16 diff
(98.8 %id)
TI_1948141921   .a 96 to 1009 119 to 1039       923/1097
(84 %)
26 diff
(97.7 %id)
TI_1948142247   .a 96 to 903 130 to 944       817/1321
(61 %)
28 diff
(97.9 %id)
TI_1948142248   .a 96 to 1010 119 to 1042       926/1211
(76 %)
23 diff
(98.2 %id)
TI_1948142592   .a 96 to 888 134 to 939       808/1379
(58 %)
33 diff
(97.7 %id)
TI_1948142593   .a 96 to 1017 121 to 1043       925/1174
(78 %)
15 diff
(98.8 %id)
TI_1948142927   .a 96 to 898 130 to 940       813/1355
(60 %)
28 diff
(98.0 %id)
TI_1948142928   .a 96 to 1017 117 to 1039       925/1183
(78 %)
21 diff
(98.3 %id)
TI_1948142931   .a 96 to 680 125 to 713       591/1286
(45 %)
22 diff
(98.3 %id)
AL554834 placenta, Placenta Cot 25-normalized .a 97 to 1203 1 to 1100       1100/1115
(98 %)
17 diff
(98.5 %id)
BM928088 hepatocellular carcinoma, cell line, Liver .a 97 to 1109 1 to 1019       1019/1033
(98 %)
17 diff
(98.4 %id)
BQ431694 melanotic melanoma, skin .a 98 to 966 1 to 868       868/870
(99 %)
2 diff
(99.8 %id)
CV029249 mixed .a 99 to 727 1 to 628       628/632
(99 %)
5 diff
(99.3 %id)
AA852909 Bone, Hip .a 99 to 388 10 to 299       290/299
(96 %)
6 diff
(98.0 %id)
BX405674 fetal liver, Liver .a 101 to 1092 1 to 988       988/988
(100 %)
4 diff
(99.6 %id)
BQ437747 leiomyosarcoma, uterus .a 101 to 973 7 to 887       878/890
(98 %)
22 diff
(97.6 %id)
CB988432 Human Placenta, placenta .a 101 to 815 40 to 765       726/808
(89 %)
21 diff
(97.5 %id)
CR988816 T-Lymphocytes .a 101 to 882 9 to 789       781/791
(98 %)
10 diff
(98.8 %id)
TI_1948141965   .a 105 to 695 142 to 736       595/1281
(46 %)
46 diff
(96.5 %id)
BF795110 lymph, lymphoma, cell line .a 106 to 816 1 to 711       711/1131
(62 %)
7 diff
(99.4 %id)
CN345918 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 140 to 759 8 to 628       621/637
(97 %)
8 diff
(98.8 %id)
BM541308 leiomyosarcoma, uterus .a 141 to 1109 1 to 972       972/1056
(92 %)
20 diff
(98.2 %id)
BM806626 leiomyosarcoma, uterus .a 150 to 1215 1 to 1068       1068/1068
(100 %)
30 diff
(97.2 %id)
DR159525 human embryonic stem cells differentiated toan early endodermal cell type .a 154 to 1010 1 to 857       857/857
(100 %)
0 diff
(100 %id)
AW160786 brain, frontal lobe .a 161 to 375 1 to 215   fully sequenced,   215/215
(100 %)
0 diff
(100 %id)
BJ991988 hepatoblastoma .a 250 to 665 1 to 416       416/416
(100 %)
1 diff
(99.8 %id)
AL043647 testis .a 277 to 778 1 to 502       502/502
(100 %)
0 diff
(100 %id)
BQ893715 dorsal root ganglia .a 281 to 1111 1 to 836       836/901
(92 %)
7 diff
(99.3 %id)
DA779948 brain .a 288 to 869 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AI637813 pooled germ cell tumors .a 313 to 717 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
AW135147   .a 340 to 734 396 to 1       396/396
(100 %)
6 diff
(98.5 %id)
AW161618 brain, frontal lobe .a 345 to 723 381 to 3   fully sequenced,   379/381
(99 %)
0 diff
(100 %id)
AI206212 pooled germ cell tumors .a 346 to 717 372 to 1       372/372
(100 %)
0 diff
(100 %id)
AI654848 pooled germ cell tumors .a 346 to 717 372 to 1       372/372
(100 %)
0 diff
(100 %id)
AW003494 pooled germ cell tumors .a 346 to 717 373 to 1       373/373
(100 %)
6 diff
(98.4 %id)
AI989821 pooled germ cell tumors .a 346 to 717 372 to 1       372/372
(100 %)
0 diff
(100 %id)
BE466076 pooled germ cell tumors .a 346 to 720 375 to 1       375/375
(100 %)
10 diff
(97.4 %id)
BE466772 pooled germ cell tumors .a 346 to 717 372 to 1       372/372
(100 %)
0 diff
(100 %id)
DA464651   .a 357 to 922 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA691087   .a 422 to 995 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BP341904 stomach mucosa .a 422 to 1003 2 to 583       582/583
(99 %)
0 diff
(100 %id)
DA948390 Spleen .a 424 to 1003 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AU124131   .a 429 to 1258 2 to 831   capped   830/836
(99 %)
3 diff
(99.7 %id)
BP250455 hippocampus .a 437 to 1018 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AK023650 placenta .a 489 to 2748 1 to 2260   available from FLJ,   2260/2260
(100 %)
2 diff
(100.0 %id)
CN345923 embryonic stem cells, DMSO-treated H9 cellline .a 499 to 1269 1 to 771       771/771
(100 %)
0 diff
(100 %id)
FN160514 breast carcinoma .a 541 to 636 1 to 96       96/96
(100 %)
0 diff
(100 %id)
BP291326 lung .a 565 to 1145 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA204883 brain .a 576 to 1149 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA476413   .a 577 to 1151 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA477429   .a 579 to 1164 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
CB134777 Liver .a 606 to 1191 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BI023662 marrow .a 654 to 1030 377 to 2       376/377
(99 %)
4 diff
(99.0 %id)
CU445743 epidermis .a 671 to 1258 1 to 587       587/594
(98 %)
12 diff
(98.0 %id)
BI023775 marrow .a 674 to 1021 388 to 41       348/388
(89 %)
1 diff
(99.8 %id)
CU449663 epidermis .a 676 to 1258 589 to 8     Submitted on the opposite strand 582/594
(97 %)
2 diff
(99.7 %id)
CU454731 epidermis .a 676 to 1258 589 to 8     Submitted on the opposite strand 582/594
(97 %)
3 diff
(99.5 %id)
BQ962909 leiomyosarcoma, uterus .a 692 to 1534 1 to 851       849/905
(93 %)
20 diff
(97.8 %id)
BF365116 nervous_normal .a 695 to 1325 647 to 22       626/647
(96 %)
0 diff
(100 %id)
BG004207 placenta_normal .a 718 to 1292 578 to 4       575/578
(99 %)
2 diff
(99.7 %id)
FN049156 breast carcinoma .a 745 to 854 1 to 110       110/110
(100 %)
0 diff
(100 %id)
BP210544 cerebellum .a 748 to 1329 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB034718 testis .a 752 to 1328 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BP204237 coronary artery .a 762 to 1342 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BE093045 breast .a 778 to 1029 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
BE093064 breast .a 778 to 1029 252 to 1     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
BQ312352 breast_normal .a 785 to 1305 528 to 2       527/528
(99 %)
6 diff
(98.9 %id)
DB452610 testis .a 786 to 1258 1 to 473       473/474
(99 %)
1 diff
(99.8 %id)
BF369842 placenta_normal .a 789 to 1284 504 to 10       495/504
(98 %)
1 diff
(99.9 %id)
DA961604 Spleen .a 838 to 1407 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
TI_154151412   .a 859 to 1393 79 to 616       538/539
(99 %)
4 diff
(99.3 %id)
BY996990   .a 877 to 1600 13 to 736       724/736
(98 %)
6 diff
(99.2 %id)
CX868361 embryonic stem .a 913 to 1398 1 to 485       485/485
(100 %)
1 diff
(99.8 %id)
BF379984 uterus_tumor .a 925 to 1302 386 to 11       376/386
(97 %)
1 diff
(99.8 %id)
BP204556 coronary artery .a 937 to 1522 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BM468336 leiomyosarcoma, uterus .a 960 to 1746 1 to 788       788/977
(80 %)
7 diff
(99.3 %id)
BE709401 head_neck .a 987 to 1468 501 to 20       482/501
(96 %)
0 diff
(100 %id)
BE709462 head_neck .a 987 to 1468 501 to 20       482/501
(96 %)
0 diff
(100 %id)
AL512769 testis .a 995 to 2748 1 to 1754   available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1754/1754
(100 %)
1 diff
(100.0 %id)
BF380006 uterus_tumor .a 1031 to 1314 291 to 7       285/291
(97 %)
2 diff
(99.4 %id)
CN484592 eye .a 1041 to 1654 1 to 614       614/614
(100 %)
0 diff
(100 %id)
DR007870 pooled .a 1055 to 1407 349 to 1     Submitted on the opposite strand 349/349
(100 %)
5 diff
(98.6 %id)
CB152433 cervix, Uterine .a 1111 to 1708 1 to 598       598/598
(100 %)
0 diff
(100 %id)
BP375284 uterus .a 1122 to 1697 1 to 576       576/576
(100 %)
0 diff
(100 %id)
CD244174 testis .a 1176 to 1930 1 to 766       766/875
(87 %)
15 diff
(98.3 %id)
BQ433648 large cell carcinoma, lung .a 1185 to 2031 1 to 852       850/858
(99 %)
11 diff
(98.8 %id)
CB130812 Liver .a 1190 to 1821 1 to 632       632/632
(100 %)
0 diff
(100 %id)
AW805562 uterus .a 1195 to 1753 576 to 19       558/576
(96 %)
0 diff
(100 %id)
BE702134 nervous_normal .a 1205 to 1746 574 to 32       543/574
(94 %)
4 diff
(99.4 %id)
CB137461 Liver .a 1205 to 1768 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BP254501 Kidney .a 1215 to 1799 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BX379816 Placenta Cot 25-normalized .a 1219 to 2274 1 to 1050       1050/1050
(100 %)
10 diff
(99.1 %id)
BE702151 nervous_normal .a 1235 to 1732 504 to 1       504/504
(100 %)
31 diff
(93.9 %id)
DA356854 subthalamic nucleus .a 1253 to 1806 2 to 555   capped   553/554
(99 %)
6 diff
(99.0 %id)
DN917594   .a 1253 to 1808 1 to 555       554/555
(99 %)
13 diff
(97.7 %id)
BM827042 Ascites, stomach .a 1253 to 1663 1 to 411       410/411
(99 %)
7 diff
(98.3 %id)
BG994075 head_neck .a 1304 to 1777 482 to 9       474/491
(96 %)
6 diff
(98.8 %id)
BM770213 Ascites, stomach .a 1310 to 1956 1 to 647       647/647
(100 %)
0 diff
(100 %id)
AW901916 nervous_normal .a 1313 to 1753 454 to 14       441/454
(97 %)
7 diff
(98.5 %id)
BG255771 adenocarcinoma, cell line, Prostate .a 1319 to 1941 1 to 623       623/623
(100 %)
0 diff
(100 %id)
CB137428 Liver .a 1334 to 1923 1 to 590       590/590
(100 %)
0 diff
(100 %id)
CR618276 T cells (Jurkat cell line) Cot10-normalized .a 1339 to 2648 1 to 1310       1310/1310
(100 %)
0 diff
(100 %id)
BE702243 nervous_normal .a 1340 to 1727 394 to 8       387/394
(98 %)
0 diff
(100 %id)
BP275521 Kidney .a 1350 to 1931 1 to 582       582/582
(100 %)
0 diff
(100 %id)
FN076380 breast carcinoma .a 1359 to 1431 1 to 73       73/73
(100 %)
3 diff
(95.9 %id)
BF832931 head_neck .a 1364 to 1894 531 to 1     Submitted on the opposite strand 531/531
(100 %)
3 diff
(99.5 %id)
BE909765 epithelioid carcinoma, Pancreas .a 1370 to 2152 1 to 780       780/783
(99 %)
27 diff
(96.6 %id)
BE702012 nervous_normal .a 1371 to 1746 384 to 9       376/384
(97 %)
0 diff
(100 %id)
TI_154187904   .a 1380 to 2009 123 to 749       627/922
(68 %)
36 diff
(96.1 %id)
BE702170 nervous_normal .a 1385 to 1741 357 to 1       357/357
(100 %)
3 diff
(99.2 %id)
BE702112 nervous_normal .a 1387 to 1737 358 to 9       350/358
(97 %)
0 diff
(100 %id)
CD558865 White Matter .a 1389 to 2165 1 to 778       778/863
(90 %)
3 diff
(99.7 %id)
BE702188 nervous_normal .a 1390 to 1738 349 to 1       349/349
(100 %)
4 diff
(98.9 %id)
BQ435440 leiomyosarcoma, uterus .a 1405 to 2160 1 to 763       763/774
(98 %)
15 diff
(98.1 %id)
BG261298 bladder, transitional cell papilloma, cell line .a 1411 to 2165 1 to 751       751/965
(77 %)
11 diff
(98.9 %id)
CR984376 T-Lymphocytes .a 1431 to 2108 1 to 678       678/678
(100 %)
1 diff
(99.9 %id)
TI_1948142594   .a 1464 to 2488 1151 to 128       1024/1250
(81 %)
33 diff
(97.4 %id)
TI_1948142249   .a 1466 to 2488 1146 to 128       1019/1268
(80 %)
37 diff
(97.1 %id)
AW362551 colon .a 1488 to 1984 498 to 1       498/499
(99 %)
6 diff
(98.8 %id)
AY007112   .a 1488 to 2678 1 to 1190   AAA   1190/1190
(100 %)
7 diff
(99.5 %id)
EL950845 eyeball .a 1506 to 2022 49 to 565       517/565
(91 %)
6 diff
(99.0 %id)
EL951127 eyeball .a 1507 to 2044 1 to 538       538/538
(100 %)
3 diff
(99.5 %id)
BE696406 colon .a 1515 to 1925 438 to 29       410/438
(93 %)
1 diff
(99.8 %id)
BE702111 nervous_normal .a 1535 to 1746 277 to 66       212/277
(76 %)
0 diff
(100 %id)
FN122693 breast carcinoma .a 1582 to 1676 1 to 95       97/95
(102 %)
4 diff
(95.8 %id)
TI_1948141922   .a 1622 to 2488 998 to 128       871/1183
(73 %)
13 diff
(99.0 %id)
TI_1948142929   .a 1623 to 2488 994 to 128       867/1287
(67 %)
8 diff
(99.4 %id)
TI_1948142250   .a 1624 to 2488 1015 to 135       878/1313
(66 %)
38 diff
(97.2 %id)
AL577565 placenta, Placenta Cot 25-normalized .a 1625 to 2716 1087 to 1       1087/1087
(100 %)
9 diff
(99.2 %id)
AK000395 ileal mucosa .a 1639 to 2748 1 to 1110   available from FLJ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1110/1110
(100 %)
3 diff
(99.8 %id)
TI_1948142933   .a 1682 to 2488 945 to 130       816/1303
(62 %)
16 diff
(98.8 %id)
TI_1948141923   .a 1744 to 2488 877 to 133       745/1259
(59 %)
10 diff
(99.3 %id)
TI_1948142595   .a 1745 to 2488 885 to 131       755/1278
(59 %)
24 diff
(98.2 %id)
TI_57182031   .a 1749 to 2461 30 to 736       707/736
(96 %)
10 diff
(98.7 %id)
TI_1948142930   .a 1756 to 2488 880 to 130       751/1406
(53 %)
26 diff
(98.2 %id)
TI_154038583   .a 1771 to 2678 981 to 87   AAA   895/965
(92 %)
16 diff
(98.4 %id)
TI_149311498   .a 1774 to 2748 1059 to 96   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 964/975
(98 %)
18 diff
(98.2 %id)
TI_149313607   .a 1775 to 2678 994 to 96   AAA   899/1026
(87 %)
16 diff
(98.5 %id)
EL950194 eyeball .a 1854 to 2434 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
CR602924 Neuroblastoma Cot 10-normalized .a 1873 to 2680 1 to 808   tiling clone,   808/808
(100 %)
0 diff
(100 %id)
TI_57192360   .a 1889 to 2678 97 to 890       794/885
(89 %)
7 diff
(99.3 %id)
FN138337 breast carcinoma .a 1890 to 1971 1 to 84       82/84
(97 %)
2 diff
(97.7 %id)
AW794820 uterus .a 1896 to 2310 424 to 10       415/424
(97 %)
1 diff
(99.8 %id)
FN151561 breast carcinoma .a 1899 to 1982 1 to 84       84/84
(100 %)
0 diff
(100 %id)
TI_159696627   .a 1919 to 2779 914 to 63       852/1086
(78 %)
14 diff
(98.8 %id)
TI_149286997   .a 1926 to 2776 886 to 37       850/1205
(70 %)
12 diff
(99.1 %id)
TI_149305963   .a 1930 to 2678 829 to 86   AAA   744/922
(80 %)
16 diff
(98.3 %id)
TI_149314659   .a 1930 to 2748 896 to 84   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 813/978
(83 %)
9 diff
(99.1 %id)
CR626386 Neuroblastoma Cot 25-normalized .a 1931 to 2680 1 to 750       750/750
(100 %)
0 diff
(100 %id)
CD366481 Alveolar Macrophage, lung .a 1931 to 2678 766 to 19   AAA   748/748
(100 %)
3 diff
(99.6 %id)
CA444729 lung, Metastatic Chondrosarcoma .a 1937 to 2678 759 to 19   AAA   741/741
(100 %)
4 diff
(99.5 %id)
BF736796 bladder_tumor .a 1946 to 2140 196 to 1     Submitted on the opposite strand 196/201
(97 %)
0 diff
(100 %id)
FN151059 breast carcinoma .a 1970 to 2053 84 to 1     Submitted on the opposite strand 84/84
(100 %)
1 diff
(98.9 %id)
BU623352 cell lines, Enchondroma .a 1973 to 2678 723 to 19   AAA   705/705
(100 %)
2 diff
(99.8 %id)
AL041718 testis .a 1999 to 2340 1 to 342   fully sequenced,   342/342
(100 %)
1 diff
(99.8 %id)
CB305481 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2004 to 2678 693 to 19   AAA   675/675
(100 %)
1 diff
(99.9 %id)
AI961227 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2040 to 2752 712 to 1       712/712
(100 %)
5 diff
(99.3 %id)
TI_149281290   .a 2045 to 2753 711 to 1       711/711
(100 %)
11 diff
(98.5 %id)
EL952494 eyeball .a 2052 to 2550 20 to 518       499/518
(96 %)
6 diff
(98.9 %id)
CB321761 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2090 to 2766 677 to 1       677/677
(100 %)
0 diff
(100 %id)
CN480613 Cell Line, Chondrosarcoma .a 2090 to 2766 677 to 1       677/677
(100 %)
0 diff
(100 %id)
FN089350 breast carcinoma .a 2099 to 2202 110 to 1     Submitted on the opposite strand 108/110
(98 %)
6 diff
(94.6 %id)
EL946985 eyeball .a 2102 to 2529 1 to 428       428/428
(100 %)
4 diff
(99.1 %id)
CD723193 eye, lacrimal gland .a 2122 to 2724 1 to 603       603/603
(100 %)
0 diff
(100 %id)
BU787758 insulinoma, Pancreas .a 2133 to 2748 623 to 8     Submitted on the opposite strand 616/623
(98 %)
0 diff
(100 %id)
BM977321 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2136 to 2766 631 to 1       631/631
(100 %)
0 diff
(100 %id)
BM996006 lung, Metastatic Chondrosarcoma .a 2137 to 2766 630 to 1       630/630
(100 %)
1 diff
(99.9 %id)
CA415579 Chondrosarcoma Grade II, Left Pelvis .a 2139 to 2766 628 to 1       628/628
(100 %)
0 diff
(100 %id)
FN145211 breast carcinoma .a 2151 to 2256 100 to 1     Submitted on the opposite strand 100/105
(95 %)
5 diff
(95.3 %id)
BP394004 pancreatic islet .a 2175 to 2738 564 to 1       564/564
(100 %)
0 diff
(100 %id)
CD629053   .a 2179 to 2515 354 to 19       336/381
(88 %)
0 diff
(100 %id)
AL043648 testis .a 2197 to 2736 541 to 1       541/541
(100 %)
1 diff
(99.9 %id)
R12004 whole brain .a 2199 to 2583 1 to 394     Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 394/510
(77 %)
17 diff
(96.7 %id)
BJ991989 hepatoblastoma .a 2205 to 2713 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AA704011   .a 2218 to 2756 537 to 1     Submitted on the opposite strand 537/541
(99 %)
6 diff
(98.9 %id)
BE810777 amnion_normal .a 2226 to 2530 304 to 2       303/304
(99 %)
7 diff
(97.7 %id)
BE810794 amnion_normal .a 2230 to 2534 313 to 12       302/315
(95 %)
3 diff
(99.1 %id)
BF325550 amnion_normal .a 2230 to 2514 285 to 3       283/287
(98 %)
3 diff
(99.0 %id)
BF325562 amnion_normal .a 2230 to 2534 319 to 16       304/321
(94 %)
5 diff
(98.5 %id)
BF359835 marrow .a 2230 to 2537 312 to 6       307/314
(97 %)
3 diff
(99.1 %id)
EL951118 eyeball .a 2240 to 2748 1 to 509   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 509/509
(100 %)
3 diff
(99.5 %id)
BM876534 insulinoma, Pancreas .a 2247 to 2748 532 to 31   AAA Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
CX868283 embryonic stem .a 2252 to 2678 456 to 30   AAA   427/427
(100 %)
0 diff
(100 %id)
FN141269 breast carcinoma .a 2254 to 2369 117 to 1     Submitted on the opposite strand 117/120
(97 %)
1 diff
(99.2 %id)
AA653896   .a 2256 to 2758 501 to 1       501/501
(100 %)
9 diff
(98.3 %id)
TI_151697633   .a 2263 to 2748 580 to 95   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 486/502
(96 %)
5 diff
(99.1 %id)
DB571630 hypothalamus .a 2271 to 2747 1 to 477     Submitted on the opposite strand 477/478
(99 %)
3 diff
(99.4 %id)
AL041719 testis .a 2279 to 2641 363 to 1   fully sequenced,   363/363
(100 %)
0 diff
(100 %id)
DB567386 hypothalamus .a 2294 to 2747 1 to 454     Submitted on the opposite strand 454/455
(99 %)
2 diff
(99.6 %id)
AA191045   .a 2297 to 2774 483 to 4     Submitted on the opposite strand 480/486
(98 %)
0 diff
(100 %id)
AA635393   .a 2297 to 2770 475 to 2       474/483
(98 %)
0 diff
(100 %id)
DB526841 testis .a 2298 to 2747 1 to 450     Submitted on the opposite strand 450/451
(99 %)
1 diff
(99.8 %id)
FN126845 breast carcinoma .a 2299 to 2410 1 to 117       117/117
(100 %)
4 diff
(96.6 %id)
DB542660 hippocampus .a 2308 to 2748 1 to 441   AAA Submitted on the opposite strand 441/441
(100 %)
0 diff
(100 %id)
T34649 blood, white blood cells .a 2311 to 2680 381 to 8     Submitted on the opposite strand 374/381
(98 %)
0 diff
(100 %id)
TI_154092715   .a 2311 to 2774 540 to 74       467/1113
(41 %)
0 diff
(100 %id)
FN055685 breast carcinoma .a 2321 to 2428 107 to 1     Submitted on the opposite strand 107/107
(100 %)
1 diff
(99.1 %id)
FN083509 breast carcinoma .a 2324 to 2428 106 to 1     Submitted on the opposite strand 106/108
(98 %)
3 diff
(97.3 %id)
DB547252 hippocampus .a 2334 to 2748 1 to 415   AAA Submitted on the opposite strand 415/415
(100 %)
1 diff
(99.8 %id)
AA852908 Bone, Hip .a 2391 to 2690 302 to 4       299/302
(99 %)
0 diff
(100 %id)
BE242546 leukopheresis .a 2393 to 2747 355 to 2       354/355
(99 %)
0 diff
(100 %id)
FN072388 breast carcinoma .a 2394 to 2503 1 to 105       105/105
(100 %)
5 diff
(95.3 %id)
BE242365 leukopheresis .a 2415 to 2677 263 to 1       263/263
(100 %)
1 diff
(99.7 %id)
FN047684 breast carcinoma .a 2420 to 2497 78 to 1     Submitted on the opposite strand 78/78
(100 %)
0 diff
(100 %id)
FN124575 breast carcinoma .a 2436 to 2548 118 to 6     Submitted on the opposite strand 113/118
(95 %)
0 diff
(100 %id)
BF377707 testis_normal .a 2441 to 2751 328 to 17       312/334
(93 %)
0 diff
(100 %id)
TI_151809098   .a 2448 to 2770 75 to 397   tiling clone,   323/991
(32 %)
1 diff
(99.9 %id)
FN064084 breast carcinoma .a 2468 to 2539 9 to 80       72/81
(88 %)
1 diff
(98.8 %id)
BE775001 uterus .a 2473 to 2718 257 to 12       246/257
(95 %)
0 diff
(100 %id)
BX400023   .a 2493 to 3286 1 to 789       789/789
(100 %)
16 diff
(98.0 %id)
FN076582 breast carcinoma .a 2525 to 2594 1 to 70       70/71
(98 %)
1 diff
(98.6 %id)
BU676237 lung, Primary Lung Epithelial Cells .a 2537 to 2692 12 to 167     Submitted on the opposite strand 156/172
(90 %)
2 diff
(98.9 %id)
BU679170 lung, Primary Lung Epithelial Cells .a 2537 to 2692 12 to 167     Submitted on the opposite strand 156/172
(90 %)
2 diff
(98.9 %id)
FN106772 breast carcinoma .a 2543 to 2656 1 to 118       118/118
(100 %)
4 diff
(96.7 %id)
T25740   .a 2606 to 2678 72 to 1       72/72
(100 %)
1 diff
(98.7 %id)
BQ574179 Chondrosarcoma Grade II, Left Pelvis .a 2623 to 3282 678 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 663/663
(100 %)
4 diff
(99.4 %id)
BM193613 leukopheresis .a 2627 to 2764 139 to 1       139/140
(99 %)
9 diff
(93.6 %id)
FN095836 breast carcinoma .a 2635 to 2702 68 to 1     Submitted on the opposite strand 68/68
(100 %)
0 diff
(100 %id)
FN064768 breast carcinoma .a 2649 to 2746 101 to 4     Submitted on the opposite strand 98/105
(93 %)
0 diff
(100 %id)
CV341783 head_neck .a 2650 to 2854 215 to 10     Submitted on the opposite strand 206/234
(88 %)
0 diff
(100 %id)
AW967493   .a 2679 to 3285 610 to 1     Submitted on the opposite strand 610/610
(100 %)
19 diff
(96.9 %id)
FN156088 breast carcinoma .a 2681 to 2748 1 to 66       66/66
(100 %)
2 diff
(97.0 %id)
FN166838 breast carcinoma .a 2682 to 2753 1 to 71       71/71
(100 %)
1 diff
(98.6 %id)
FN164083 breast carcinoma .a 2689 to 2746 58 to 2     Submitted on the opposite strand 57/58
(98 %)
0 diff
(100 %id)
TI_149278710   .a 2717 to 3282 654 to 85   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 570/703
(81 %)
7 diff
(99.1 %id)
TI_149278978   .a 2717 to 3282 640 to 73   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 568/1200
(47 %)
9 diff
(99.3 %id)
TI_149304288   .a 2717 to 3282 652 to 84   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 569/974
(58 %)
8 diff
(99.2 %id)
BM971213 lung, Primary Lung Epithelial Cells .a 2717 to 3282 584 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 569/577
(98 %)
8 diff
(98.7 %id)
BU678580 lung, Primary Lung Epithelial Cells .a 2717 to 3282 585 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 570/578
(98 %)
7 diff
(98.8 %id)
BU678673 lung, Primary Lung Epithelial Cells .a 2717 to 3282 583 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 568/576
(98 %)
9 diff
(98.5 %id)
AW967502   .a 2749 to 3285 536 to 1     Submitted on the opposite strand 536/615
(87 %)
3 diff
(99.6 %id)
DN917595   .a 2753 to 3279 546 to 19   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 528/528
(100 %)
3 diff
(99.5 %id)
DA911283   .a 2757 to 3329 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
DB545274 hippocampus .a 2765 to 3284 1 to 518     Submitted on the opposite strand 518/520
(99 %)
2 diff
(99.7 %id)
AW966878   .a 2776 to 3285 510 to 1     Submitted on the opposite strand 510/581
(87 %)
8 diff
(98.7 %id)
TI_154011499   .a 2777 to 3282 616 to 104   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 513/789
(65 %)
31 diff
(96.1 %id)
DB540444 hippocampus .a 2798 to 3282 1 to 485     Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
DB528235 testis .a 2803 to 3286 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
DB524312 testis .a 2808 to 3290 1 to 483     Submitted on the opposite strand 483/483
(100 %)
0 diff
(100 %id)
BG272339 nasopharynx, normal epithelium .a 2819 to 3279 461 to 1       461/493
(93 %)
0 diff
(100 %id)
DB520198 testis .a 2828 to 3282 1 to 455     Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
DB526529 testis .a 2829 to 3282 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
DB545131 hippocampus .a 2832 to 3282 1 to 451     Submitted on the opposite strand 451/451
(100 %)
0 diff
(100 %id)
DB538133 hippocampus .a 2840 to 3282 1 to 442     Submitted on the opposite strand 442/442
(100 %)
5 diff
(98.9 %id)
DB518047 testis .a 2843 to 3282 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
CA435922 lung, Metastatic Chondrosarcoma .a 2844 to 3282 455 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 440/440
(100 %)
2 diff
(99.6 %id)
BM986986 mixed .a 2845 to 3282 452 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 437/437
(100 %)
1 diff
(99.8 %id)
GD145598   .a 2848 to 2995 148 to 1     Submitted on the opposite strand 148/149
(99 %)
6 diff
(96.0 %id)
BI335315 cervical carcinoma cell line, cervix .a 2854 to 3282 1 to 429   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 429/429
(100 %)
0 diff
(100 %id)
DB548339 hippocampus .a 2859 to 3282 1 to 424     Submitted on the opposite strand 424/424
(100 %)
0 diff
(100 %id)
FN090547 breast carcinoma .a 2863 to 2954 92 to 1     Submitted on the opposite strand 92/112
(82 %)
0 diff
(100 %id)
FN054502 breast carcinoma .a 2869 to 2988 120 to 1     Submitted on the opposite strand 120/120
(100 %)
0 diff
(100 %id)
AW518217 lymph node, lymphoma, follicular mixed small and largecell .a 2878 to 3282 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AI245882 Kidney .a 2884 to 3282 399 to 1       399/399
(100 %)
0 diff
(100 %id)
AI050899 parathyroid gland, parathyroid tumor .a 2886 to 3286 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
BI962577 Islets of Langerhans, Pancreas .a 2887 to 3282 1 to 396   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AI032243 carcinoid, lung .a 2891 to 3284 394 to 3       392/394
(99 %)
0 diff
(100 %id)
BU941579 mixed (pool of 40 RNAs) .a 2892 to 3280 1 to 388       388/392
(98 %)
3 diff
(99.3 %id)
FN074107 breast carcinoma .a 2914 to 3030 1 to 120       120/120
(100 %)
2 diff
(98.4 %id)
R39843 whole brain .a 2976 to 3279 320 to 14   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 307/310
(99 %)
5 diff
(98.4 %id)
AI869799 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2994 to 3283 294 to 1       294/294
(100 %)
10 diff
(96.6 %id)
BU536036 mixed (pool of 40 RNAs) .a 3000 to 3282 1 to 284   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 284/284
(100 %)
2 diff
(99.3 %id)
R36929 whole brain .a 3007 to 3282 287 to 11   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 277/278
(99 %)
3 diff
(99.0 %id)
FN121315 breast carcinoma .a 3018 to 3118 100 to 1     Submitted on the opposite strand 100/100
(100 %)
2 diff
(98.0 %id)
BF745413 breast .a 3034 to 3278 250 to 4     Submitted on the opposite strand 247/254
(97 %)
0 diff
(100 %id)
BF745504 breast .a 3034 to 3265 243 to 9     Submitted on the opposite strand 235/246
(95 %)
0 diff
(100 %id)
BF745520 breast .a 3034 to 3248 219 to 4     Submitted on the opposite strand 216/222
(97 %)
0 diff
(100 %id)
BF754804 colon .a 3034 to 3242 214 to 6     Submitted on the opposite strand 209/218
(95 %)
0 diff
(100 %id)
CV317016 breast .a 3034 to 3249 221 to 3     Submitted on the opposite strand 219/225
(97 %)
0 diff
(100 %id)
EH328821   .a 3054 to 3111 1 to 58       58/58
(100 %)
0 diff
(100 %id)
FN050819 breast carcinoma .a 3108 to 3210 103 to 1     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
FN119223 breast carcinoma .a 3142 to 3239 1 to 98       98/100
(98 %)
1 diff
(99.0 %id)
BF800022 colon_ins .a 3146 to 3294 182 to 36     Submitted on the opposite strand 147/183
(80 %)
0 diff
(100 %id)
BY999583   .a 3178 to 3284 1 to 107     Submitted on the opposite strand 107/108
(99 %)
1 diff
(99.1 %id)
EC451096 Prostate .a 3183 to 3255 1 to 72       72/72
(100 %)
4 diff
(94.5 %id)
DA778813 brain .b 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BX956853   .b 10 to 659 1 to 650       650/650
(100 %)
3 diff
(99.6 %id)
BI463143 testis .b 29 to 545 1 to 521   available from MGC,   521/637
(81 %)
20 diff
(96.9 %id)
BC041367 testis .b 34 to 4014 1 to 3985 D149G tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 3985/3985
(100 %)
7 diff
(99.9 %id)
DB079779 testis .b 322 to 856 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB461115 testis .b 380 to 850 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
DB462765 testis .b 380 to 865 1 to 486       486/486
(100 %)
1 diff
(99.8 %id)
DB080144 testis .b 399 to 969 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BG723314 testis .b 401 to 1087 1 to 683   tiling clone,   683/694
(98 %)
7 diff
(99.0 %id)
DA710560   .b 450 to 986 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA292637 hippocampus .b 821 to 1381 2 to 564   tiling clone, capped   563/563
(100 %)
2 diff
(99.7 %id)
DB326131 brain .b 2923 to 3480 559 to 1       559/559
(100 %)
1 diff
(99.9 %id)
BM477139 lymph, lymphoma, cell line .b 3651 to 4692 1 to 1057   tiling clone,   1057/1071
(98 %)
38 diff
(96.5 %id)
FN117803 breast carcinoma .b 4163 to 4239 77 to 1     Submitted on the opposite strand 77/78
(98 %)
0 diff
(100 %id)
AW938402 denis_drash .b 4642 to 5018 378 to 1   tiling clone, Submitted on the opposite strand 378/378
(100 %)
7 diff
(98.2 %id)
TI_154061288   .b 4780 to 5713 1004 to 87   tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 918/1008
(91 %)
22 diff
(97.9 %id)
FN092655 breast carcinoma .b 4808 to 4906 1 to 99   tiling clone,   99/100
(99 %)
2 diff
(98.0 %id)
CA420509 Bone, Enchondroma cell line .b 4927 to 5713 805 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 787/787
(100 %)
3 diff
(99.7 %id)
BU621624 cell lines, Chondrosarcoma .b 5070 to 5713 662 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 644/644
(100 %)
1 diff
(99.9 %id)
TI_154038661   .b 5289 to 5713 510 to 86   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 425/972
(43 %)
0 diff
(100 %id)
BX647213 endometrium .c 1 to 5020 1 to 5019 T422I tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 5019/5019
(100 %)
14 diff
(99.8 %id)
CV368151 colon .c 2540 to 2733 1 to 193       193/193
(100 %)
9 diff
(95.4 %id)
CV368144 colon .c 2553 to 2908 7 to 355       349/355
(98 %)
14 diff
(96.1 %id)
DW414519 Liver .c 3677 to 3974 16 to 316   tiling clone,   301/316
(95 %)
6 diff
(98.2 %id)
DA650602   .d 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DB089905 testis .d 1 to 559 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BP271030 small intestine .d 16 to 598 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA787090 brain .d 16 to 379 2 to 365   capped   364/364
(100 %)
2 diff
(99.5 %id)
BM818063 stomach .d 16 to 546 1 to 531       531/531
(100 %)
3 diff
(99.5 %id)
DB099910 testis .d 17 to 604 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA477167   .d 44 to 600 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA624101 Kidney .d 44 to 586 2 to 545   capped   544/546
(99 %)
2 diff
(99.7 %id)
DA885795   .d 44 to 596 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BM152987 leukopheresis .d 45 to 455 1 to 411       411/413
(99 %)
15 diff
(96.4 %id)
DA494795 brain .d 48 to 550 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
BM450432 eye, retinoblastoma .d 59 to 981 1 to 928   tiling clone,   928/1019
(91 %)
8 diff
(99.3 %id)
BP238061 Liver .d 82 to 671 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
BM750925 Ascites, stomach .d 626 to 1049 24 to 447   tiling clone,   424/424
(100 %)
1 diff
(99.8 %id)
AV725193 hypothalamus .e 1 to 740 1 to 742 S130F A165C A166L S167H K168Q ... tiling clone,   742/742
(100 %)
13 diff
(98.3 %id)
DA406856 thalamus .f 1 to 562 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA527491 brain .f 1 to 571 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
DA162765 amygdala .f 7 to 577 2 to 573   capped   572/576
(99 %)
3 diff
(99.5 %id)
BP242980 Liver .f 20 to 599 1 to 580   tiling clone,   580/580
(100 %)
1 diff
(99.9 %id)
DB093189 testis .f 21 to 579 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AL041076 testis .f 465 to 884 1 to 420   tiling clone,   420/420
(100 %)
0 diff
(100 %id)
DA947970 Spleen .g 1 to 551 2 to 554 N37K K38Q L39A M40Y D41G ... tiling clone, capped   553/553
(100 %)
2 diff
(99.7 %id)
DA296609 hippocampus .h 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DB092656 testis .i 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
CD653985 Embryonic Stem cells .i 334 to 1057 5 to 726   tiling clone,   722/813
(88 %)
14 diff
(98.3 %id)
BF819158 colon_ins .j 1 to 495 19 to 514 E11* tiling clone,   496/514
(96 %)
10 diff
(98.1 %id)
DA075494 cerebellum .k 1 to 567 2 to 568 F28L tiling clone, capped   567/567
(100 %)
2 diff
(99.7 %id)
BM709725 eye, Retina Foveal and Macular .k 165 to 490 1 to 327   fully sequenced,   327/327
(100 %)
3 diff
(99.1 %id)
BU733673 eye, Retina Foveal and Macular .k 460 to 825 382 to 17   tiling clone, fully sequenced, AAA   366/366
(100 %)
0 diff
(100 %id)
CV570576 cornea, eye .l 1 to 623 4 to 626   tiling clone,   626/626
(100 %)
1 diff
(99.9 %id)
CB987300 Pooled-Glandular .l 15 to 772 1 to 765   tiling clone,   765/767
(99 %)
22 diff
(97.2 %id)
BX646182   .l 27 to 687 1 to 661   tiling clone,   661/661
(100 %)
2 diff
(99.7 %id)
AI866263 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .m 1 to 321 323 to 6 exact tiling clone,   318/323
(98 %)
0 diff
(100 %id)
AF186382   Gene VPS35, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI