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Gene VPS28TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
595 representative clones for gene VPS28 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
EL949442 eyeball .a -11 to 548 16 to 576       561/576
(97 %)
8 diff
(98.7 %id)
CB160419 Liver .a -9 to 563 1 to 573       573/573
(100 %)
0 diff
(100 %id)
W03625 melanocyte .a -8 to 388 1 to 394       394/396
(99 %)
7 diff
(98.3 %id)
CN363274 embryonic stem cells, DMSO-treated H9 cellline .a 1 to 582 7 to 588   tiling clone,   588/588
(100 %)
1 diff
(99.9 %id)
ES310017 scalp interfollicular dermis, skin .a 2 to 537 1 to 536       536/536
(100 %)
4 diff
(99.3 %id)
BG331397 large cell carcinoma, lung .a 2 to 814 2 to 812 T67S A68C A69S C70L S71L ...     811/863
(93 %)
40 diff
(95.4 %id)
BQ694481 adipose .a 3 to 553 4 to 553       550/553
(99 %)
6 diff
(99.0 %id)
BQ650828 hepatocellular carcinoma, cell line, Liver .a 3 to 909 1 to 921 P172T D173R F174L E175*     921/954
(96 %)
53 diff
(94.5 %id)
BP197477 adrenal gland .a 11 to 564 26 to 580       580/580
(100 %)
1 diff
(99.9 %id)
BP382673 adipose tissue .a 11 to 571 27 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BC050713 Duodenum, adenocarcinoma .a 11 to 1016 24 to 1029 exact tiling clone, available from MGC, AAA   1029/1029
(100 %)
0 diff
(100 %id)
CD683905 normal nasopharynx .a 11 to 522 55 to 566       540/566
(95 %)
6 diff
(99.0 %id)
CD708153 normal nasopharynx .a 11 to 441 45 to 476       466/477
(97 %)
13 diff
(97.3 %id)
CN363277 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 11 to 677 36 to 703       703/703
(100 %)
6 diff
(99.2 %id)
AV710103 adrenal cortico adenoma for Cushing'ssyndrome .a 11 to 412 28 to 429       429/429
(100 %)
0 diff
(100 %id)
EL952334 eyeball .a 11 to 536 24 to 549       549/549
(100 %)
1 diff
(99.9 %id)
BQ636613 eye, retina .a 11 to 547 50 to 586       586/586
(100 %)
1 diff
(99.9 %id)
AI815381 brain, frontal lobe .a 11 to 412 34 to 435       435/435
(100 %)
1 diff
(99.8 %id)
BF527915 anaplastic oligodendroglioma with 1p/19qloss, brain .a 11 to 559 48 to 595       595/595
(100 %)
2 diff
(99.7 %id)
BG707241 brain, hypothalamus .a 11 to 506 66 to 561       561/561
(100 %)
6 diff
(99.0 %id)
BU570571 testis .a 11 to 443 38 to 471       471/984
(47 %)
10 diff
(99.0 %id)
BP269281 thyroid .a 11 to 567 26 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP269979 thyroid .a 11 to 564 26 to 579       579/579
(100 %)
2 diff
(99.7 %id)
CB132232 Liver .a 11 to 561 26 to 576       576/576
(100 %)
1 diff
(99.9 %id)
CB142894 Liver .a 11 to 528 56 to 573       573/573
(100 %)
1 diff
(99.9 %id)
CB144880 Liver .a 11 to 373 26 to 389       389/389
(100 %)
6 diff
(98.5 %id)
BP304402   .a 11 to 536 56 to 581       581/581
(100 %)
1 diff
(99.9 %id)
NM_183057.1   .a 11 to 1016 57 to 1062 exact RefSeq, AAA   1062/1062
(100 %)
0 diff
(100 %id)
DA899997 skeletal muscle .a 11 to 537 27 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DN990764 brain, whole brain .a 11 to 569 70 to 628       605/628
(96 %)
5 diff
(99.3 %id)
BP380505   .a 11 to 446 79 to 514       514/529
(97 %)
4 diff
(99.3 %id)
EL734685 mixed .a 45 to 697 1 to 653       653/653
(100 %)
0 diff
(100 %id)
BE727439 melanotic melanoma, skin .a 56 to 778 1 to 720       720/721
(99 %)
8 diff
(98.9 %id)
TI_154119509   .a 257 to 1010 826 to 85   AAA   742/949
(78 %)
13 diff
(98.7 %id)
TI_1948236045   .a 401 to 745 955 to 606     Submitted on the opposite strand 350/1160
(30 %)
11 diff
(99.1 %id)
TI_1948235578   .a 446 to 745 901 to 599     Submitted on the opposite strand 303/1175
(25 %)
5 diff
(99.6 %id)
W37873 parathyroid gland, parathyroid tumor .a 507 to 1012 521 to 15   AAA   507/526
(96 %)
11 diff
(98.0 %id)
AA622285 Prostate, prostate tumor .a 537 to 1015 492 to 16   AAA   477/477
(100 %)
2 diff
(99.6 %id)
AA604112 adrenal adenoma, adrenal gland .a 537 to 1012 480 to 7       474/480
(98 %)
0 diff
(100 %id)
AI091991 parathyroid gland, parathyroid tumor .a 618 to 1012 409 to 15   AAA   395/395
(100 %)
2 diff
(99.5 %id)
AA366540 Pancreas .a 622 to 864 1 to 242       242/242
(100 %)
2 diff
(99.2 %id)
AA367175 Pancreas .a 622 to 855 1 to 232       232/233
(99 %)
3 diff
(98.8 %id)
AW953711   .a 623 to 1017 1 to 395       395/541
(73 %)
1 diff
(99.9 %id)
BG482364 choriocarcinoma, placenta .a 643 to 1016 110 to 483   AAA   374/483
(77 %)
6 diff
(98.8 %id)
AA454504 ovarian tumor, ovary .b -11 to 452 1 to 466   tiling clone,   466/466
(100 %)
4 diff
(99.2 %id)
DA792121 brain .b -11 to 514 2 to 527   capped   526/526
(100 %)
2 diff
(99.7 %id)
DA069015 cerebellum .b 11 to 462 32 to 485   capped   484/484
(100 %)
2 diff
(99.6 %id)
DA069572 cerebellum .b 11 to 511 26 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA165988 amygdala .b 11 to 504 70 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA179940 amygdala .b 11 to 528 49 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
DA210745 brain .b 11 to 503 56 to 551   capped   550/550
(100 %)
5 diff
(99.1 %id)
BU658837 blood .b 11 to 515 57 to 561   tiling clone,   561/561
(100 %)
0 diff
(100 %id)
BG419265 Kidney, renal cell adenocarcinoma .b 11 to 664 25 to 677       677/920
(73 %)
19 diff
(98.0 %id)
DA796354 brain .b 11 to 469 26 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
BQ953129 epidermoid carcinoma, cell line, lung .b 30 to 545 1 to 518       518/1184
(43 %)
6 diff
(99.5 %id)
F07564 brain, total brain .b 57 to 316 1 to 262       262/262
(100 %)
3 diff
(98.9 %id)
AA351808 brain .b 59 to 375 1 to 319       319/319
(100 %)
2 diff
(99.4 %id)
BF794030 adrenal cortex carcinoma, cell line, adrenal gland .b 95 to 849 1 to 755       755/852
(88 %)
14 diff
(98.4 %id)
BI040359 nervous_tumor .b 111 to 419 333 to 23       311/333
(93 %)
2 diff
(99.4 %id)
TI_57200012   .b 267 to 1004 58 to 796       739/796
(92 %)
9 diff
(98.9 %id)
BI818726 pooled brain, lung, testis .b 270 to 1004 1 to 736       736/736
(100 %)
6 diff
(99.2 %id)
CR593237 Neuroblastoma Cot 10-normalized .b 304 to 1204 1 to 901 exact tiling clone,   901/901
(100 %)
0 diff
(100 %id)
R50263 breast .b 314 to 640 4 to 339       336/354
(94 %)
17 diff
(95.2 %id)
R50726 breast .b 805 to 1203 400 to 1       400/410
(97 %)
13 diff
(96.9 %id)
AV764474 bone marrow .c -11 to 593 1 to 605       605/756
(80 %)
9 diff
(98.9 %id)
BQ934279 large cell carcinoma, lung .c -10 to 785 1 to 801 E209X F215L N216Q     801/854
(93 %)
7 diff
(99.2 %id)
BU955829 adenocarcinoma, cell line, breast .c -10 to 782 1 to 801 Q200P D207H N216Q F218L L219P ...     801/926
(86 %)
25 diff
(97.4 %id)
BF685525 leiomyosarcoma cell line, uterus .c -9 to 778 1 to 790 G86A S87Q E88K I89S S90A ...     790/886
(89 %)
41 diff
(95.4 %id)
BU538966 adenocarcinoma, cell line, breast .c -9 to 813 11 to 842 F206V E209G S210V A211S Y212L ...     832/986
(84 %)
29 diff
(97.1 %id)
T52116 fetal spleen, Spleen .c -8 to 239 1 to 248       248/368
(67 %)
3 diff
(99.2 %id)
AA401057 ovarian tumor, ovary .c -8 to 331 1 to 340       340/340
(100 %)
4 diff
(98.9 %id)
AA449010   .c -8 to 425 1 to 432       432/432
(100 %)
4 diff
(99.1 %id)
BM708498 eye, RPE and Choroid .c -8 to 178 1 to 188       188/188
(100 %)
3 diff
(98.5 %id)
BG256168 adenocarcinoma, cell line, Prostate .c 1 to 751 9 to 751 G86A S87Q E88K I89S S90A ...     751/961
(78 %)
20 diff
(98.0 %id)
BM553469 amelanotic melanoma, cell line, skin .c 1 to 791 8 to 808 N216H R217P F218L L219P H220A ... AAA   808/952
(84 %)
13 diff
(98.7 %id)
BU537978 adenocarcinoma, cell line, breast .c 1 to 827 8 to 846 R202A Q203S M204N L205A F206V ...     846/971
(87 %)
36 diff
(96.3 %id)
AF182844   .c 1 to 898 18 to 915 exact tiling clone, AAA   902/915
(98 %)
0 diff
(100 %id)
BX282132 embryonal carcinoma, cell line, testis .c 1 to 490 4 to 493       493/493
(100 %)
0 diff
(100 %id)
T84349 liver and spleen .c 1 to 295 3 to 301       301/383
(78 %)
9 diff
(97.7 %id)
BF792361 adrenal cortex carcinoma, cell line, adrenal gland .c 1 to 793 3 to 791 exact     791/793
(99 %)
13 diff
(98.4 %id)
BM468952 embryonal carcinoma, cell line, testis .c 1 to 894 3 to 900 exact     900/904
(99 %)
6 diff
(99.4 %id)
AL521763 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 1 to 892 10 to 901 exact fully sequenced,   893/901
(99 %)
1 diff
(99.9 %id)
R29446   .c 1 to 173 2 to 173       173/173
(100 %)
4 diff
(97.7 %id)
DB496667 hypothalamus .c 1 to 494 2 to 495       495/495
(100 %)
2 diff
(99.6 %id)
BU153203 large cell carcinoma, lung .c 1 to 746 2 to 754 L170P D194N E195D F206V A211T ...     754/923
(81 %)
24 diff
(97.4 %id)
BU190092 leiomyosarcoma, uterus .c 1 to 829 2 to 832 exact     832/906
(91 %)
5 diff
(99.5 %id)
AA331286   .c 1 to 201 1 to 201       201/201
(100 %)
0 diff
(100 %id)
BF526380 brain, glioblastoma with EGFR amplification .c 1 to 781 4 to 776 F43L A44R V45W V46*     773/782
(98 %)
21 diff
(97.4 %id)
BQ898850 brain, neuroblastoma, cell line .c 1 to 891 1 to 905 E209X N216H A221X     905/941
(96 %)
23 diff
(97.6 %id)
CD627613   .c 2 to 140 12 to 151       145/151
(96 %)
6 diff
(96.1 %id)
AA432040   .c 2 to 477 17 to 491   fully sequenced,   480/496
(96 %)
12 diff
(97.6 %id)
BI832300 brain, medulla .c 2 to 562 15 to 576       567/576
(98 %)
6 diff
(99.0 %id)
BM809106 amelanotic melanoma, cell line, skin .c 2 to 898 28 to 929 P9L tiling clone, AAA   907/929
(97 %)
15 diff
(98.4 %id)
TI_57176611   .c 2 to 562 15 to 576       567/576
(98 %)
6 diff
(99.0 %id)
AA299907 uterus .c 3 to 328 1 to 325       325/325
(100 %)
10 diff
(97.0 %id)
BE889615 leiomyosarcoma, uterus .c 3 to 729 1 to 723 P172T D173R F174L E175*     723/739
(97 %)
10 diff
(98.7 %id)
H68809 liver and spleen .c 5 to 353 1 to 358       363/383
(94 %)
19 diff
(95.1 %id)
CX872438 embryonic stem .c 6 to 839 1 to 834 exact     834/834
(100 %)
0 diff
(100 %id)
TI_57162969   .c 6 to 871 29 to 894 W183L L184A Q185A T186D L187P ...     870/895
(97 %)
21 diff
(97.7 %id)
BC006485 Lung, small cell carcinoma .c 7 to 898 8 to 899 exact available from MGC, AAA   895/899
(99 %)
6 diff
(99.4 %id)
BC019321 Lung, small cell carcinoma .c 7 to 898 8 to 899   available from MGC, AAA   895/899
(99 %)
6 diff
(99.4 %id)
CR615683 Placenta Cot 25-normalized .c 7 to 902 1 to 896 exact     896/896
(100 %)
0 diff
(100 %id)
BX395470 Neuroblastoma Cot 50-normalized .c 7 to 787 1 to 781 E159X T163N H169Y T179K W183L ...     781/781
(100 %)
12 diff
(98.5 %id)
BX379850 Placenta Cot 25-normalized .c 7 to 902 1 to 895 T179X fully sequenced,   895/895
(100 %)
1 diff
(99.9 %id)
AW245895 lung, small cell carcinoma .c 7 to 477 17 to 487   fully sequenced,   474/490
(96 %)
6 diff
(98.8 %id)
DN998597 bone marrow .c 7 to 668 14 to 675       670/675
(99 %)
9 diff
(98.7 %id)
TI_227713153   .c 7 to 898 965 to 79 F2V L26C Y27T K28R N29T ... AAA   887/1029
(86 %)
5 diff
(99.6 %id)
W00566 lung .c 8 to 468 1 to 455       455/455
(100 %)
8 diff
(98.3 %id)
BI912260 leukocyte .c 8 to 500 18 to 516   AAA   503/771
(65 %)
18 diff
(97.7 %id)
TI_57236276   .c 8 to 500 18 to 516   AAA   503/771
(65 %)
18 diff
(97.7 %id)
AK026865 adipose tissue .c 11 to 898 26 to 913 exact available from FLJ, AAA   913/913
(100 %)
1 diff
(99.9 %id)
BE165650 head_neck .c 11 to 465 39 to 492       479/492
(97 %)
12 diff
(97.6 %id)
BQ354517 head_neck .c 11 to 451 37 to 478       442/478
(92 %)
6 diff
(98.8 %id)
CD693428 normal nasopharynx .c 11 to 480 38 to 509       500/509
(98 %)
8 diff
(98.5 %id)
CN363273 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 11 to 667 31 to 687       687/687
(100 %)
3 diff
(99.6 %id)
CR603930 B cells (Ramos cell line) Cot 25-normalized .c 11 to 898 36 to 923 exact     923/923
(100 %)
0 diff
(100 %id)
BX384780   .c 11 to 858 850 to 4 N29H D59N K142X L143C R144A ...     884/887
(99 %)
8 diff
(99.1 %id)
DT217108 brain .c 11 to 640 44 to 673       673/673
(100 %)
5 diff
(99.3 %id)
EL955029 eyeball .c 11 to 573 33 to 595       562/595
(94 %)
6 diff
(99.0 %id)
FN143649 breast carcinoma .c 11 to 56 35 to 78       78/78
(100 %)
5 diff
(93.6 %id)
BF527738 anaplastic oligodendroglioma with 1p/19qloss, brain .c 11 to 665 58 to 710       695/713
(97 %)
12 diff
(98.4 %id)
BF665973 brain, primitive neuroectoderm .c 11 to 692 48 to 728       728/846
(86 %)
24 diff
(97.2 %id)
BF669652 brain, primitive neuroectoderm .c 11 to 652 38 to 693       626/806
(77 %)
34 diff
(95.8 %id)
BF681436 Prostate .c 11 to 694 27 to 706       706/884
(79 %)
24 diff
(97.3 %id)
BG489112 large cell carcinoma, lung .c 11 to 757 25 to 772 E53V K54E A55G Y56L I57H ...     772/772
(100 %)
10 diff
(98.8 %id)
BI765363 pooled colon, kidney, stomach .c 11 to 899 35 to 926 R217P     926/1186
(78 %)
15 diff
(98.8 %id)
BI551216 brain, hippocampus .c 11 to 824 49 to 876 Q85R S168R H169P M190C S191R ...     869/971
(89 %)
33 diff
(96.7 %id)
CB996400 placenta, pre-eclamptic placenta .c 11 to 740 53 to 787 L219P H220A A221C     760/809
(93 %)
13 diff
(98.4 %id)
TI_57152521   .c 11 to 899 68 to 959 R217P     926/1219
(75 %)
21 diff
(98.3 %id)
TI_44171339   .c 11 to 824 135 to 962 Q85R S168R H169P M190C S191R ...     877/1105
(79 %)
33 diff
(97.1 %id)
NM_016208.2   .c 11 to 898 57 to 944 exact RefSeq, AAA   944/944
(100 %)
0 diff
(100 %id)
BP339985 Spleen .c 11 to 338 45 to 372       372/581
(64 %)
1 diff
(99.9 %id)
BI838330 pooled pancreas and spleen .c 13 to 871 1 to 858 W183L L184A Q185A T186D L187P ...     858/859
(99 %)
15 diff
(98.3 %id)
TI_59382450   .c 13 to 742 99 to 845 K28N N29E A30R R31P E32G ... AAA   745/912
(81 %)
36 diff
(96.1 %id)
AF316887   .c 15 to 898 15 to 897 exact AAA   883/897
(98 %)
6 diff
(99.4 %id)
W47604 senescent fibroblast .c 15 to 446 15 to 447       433/457
(94 %)
11 diff
(97.6 %id)
AA357363 Prostate .c 18 to 211 1 to 194       194/194
(100 %)
0 diff
(100 %id)
AA360539   .c 18 to 324 1 to 309       309/311
(99 %)
8 diff
(97.5 %id)
BM798092 Ascites, stomach .c 19 to 388 1 to 370       370/370
(100 %)
5 diff
(98.7 %id)
BE263619 lung, small cell carcinoma .c 20 to 656 1 to 634       634/634
(100 %)
3 diff
(99.6 %id)
W39632 parathyroid gland, parathyroid tumor .c 21 to 446 1 to 432       432/439
(98 %)
14 diff
(96.9 %id)
TI_149312509   .c 23 to 898 963 to 91 P14X F43X AAA   873/978
(89 %)
2 diff
(99.8 %id)
T47527 placenta .c 25 to 285 1 to 260       260/260
(100 %)
2 diff
(99.3 %id)
CD627614   .c 26 to 822 811 to 16 P14L N16T K17S P18R E19S ...     796/811
(98 %)
0 diff
(100 %id)
BE261099 brain, neuroblastoma .c 27 to 833 1 to 800 G86A S87Q E88K I89S S90A ...     800/944
(84 %)
16 diff
(98.4 %id)
AW176075 breast .c 31 to 341 312 to 2       311/312
(99 %)
3 diff
(99.1 %id)
CV026597 mixed .c 45 to 389 1 to 345       345/345
(100 %)
3 diff
(99.2 %id)
W73646 heart .c 45 to 500 1 to 450       452/549
(82 %)
10 diff
(98.2 %id)
TI_1948100488   .c 45 to 713 130 to 808 W183L L184A Q185A T186R L187P ...     679/1454
(46 %)
26 diff
(98.3 %id)
CN363276 embryonic stem cells, DMSO-treated H9 cellline .c 46 to 588 1 to 543       543/543
(100 %)
0 diff
(100 %id)
BM924415 pooled colon, kidney, stomach .c 47 to 604 1 to 558       558/1263
(44 %)
23 diff
(98.2 %id)
TI_57166382   .c 48 to 718 23 to 694       672/704
(95 %)
20 diff
(97.2 %id)
TI_43961462   .c 49 to 872 70 to 893       824/893
(92 %)
16 diff
(98.3 %id)
BI489674 pooled brain, lung, testis .c 50 to 872 1 to 823       823/823
(100 %)
10 diff
(98.8 %id)
W35117 heart .c 51 to 500 1 to 453       453/455
(99 %)
9 diff
(98.1 %id)
BG281683 melanotic melanoma, skin .c 51 to 803 1 to 757       757/931
(81 %)
24 diff
(97.5 %id)
W69467 heart .c 52 to 526 1 to 476     Submitted on the opposite strand 476/476
(100 %)
10 diff
(97.9 %id)
AA464104 ovarian tumor, ovary .c 52 to 241 1 to 191       191/226
(84 %)
2 diff
(99.2 %id)
H82027 liver and spleen .c 54 to 347 1 to 297       297/355
(83 %)
6 diff
(98.4 %id)
AA150682 uterus .c 54 to 488 1 to 433       433/434
(99 %)
7 diff
(98.4 %id)
BG387605 embryonal carcinoma, cell line, testis .c 54 to 446 1 to 394       394/639
(61 %)
4 diff
(99.4 %id)
TI_153949464   .c 54 to 625 76 to 648       573/1295
(44 %)
4 diff
(99.7 %id)
BI833318 pooled pancreas and spleen .c 57 to 718 1 to 663       663/673
(98 %)
15 diff
(97.8 %id)
CR988591 T-Lymphocytes .c 61 to 881 1 to 824       824/824
(100 %)
3 diff
(99.7 %id)
CR997017 T-Lymphocytes .c 61 to 826 1 to 766       766/766
(100 %)
0 diff
(100 %id)
BI819983 pooled brain, lung, testis .c 63 to 589 1 to 531       529/578
(91 %)
11 diff
(98.1 %id)
TI_57198215   .c 63 to 589 33 to 563       529/610
(86 %)
17 diff
(97.3 %id)
AA320915 adipose tissue, white .c 65 to 320 1 to 256       256/256
(100 %)
0 diff
(100 %id)
N44144 melanocyte .c 76 to 446 1 to 371       371/379
(97 %)
5 diff
(98.7 %id)
BI490685 pooled brain, lung, testis .c 80 to 835 767 to 11       757/801
(94 %)
15 diff
(98.2 %id)
TI_43961464   .c 80 to 835 767 to 11       757/801
(94 %)
15 diff
(98.2 %id)
N42766 melanocyte .c 82 to 517 27 to 463       437/463
(94 %)
9 diff
(98.1 %id)
BE772371 prostate_tumor .c 83 to 538 26 to 481       457/481
(95 %)
9 diff
(98.2 %id)
BM314105 insulinoma, Pancreas .c 89 to 662 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BM505740 insulinoma, Pancreas .c 89 to 593 1 to 505       505/544
(92 %)
16 diff
(97.1 %id)
BQ582115 insulinoma, Pancreas .c 89 to 623 1 to 535   fully sequenced,   535/535
(100 %)
2 diff
(99.7 %id)
BQ787301 insulinoma, Pancreas .c 89 to 477 1 to 389   fully sequenced,   389/389
(100 %)
2 diff
(99.5 %id)
BU071471 insulinoma, Pancreas .c 89 to 477 1 to 389   fully sequenced,   389/389
(100 %)
2 diff
(99.5 %id)
BF175496 blood .c 90 to 300 1 to 213       213/218
(97 %)
8 diff
(96.4 %id)
BQ947206 sciatic nerve .c 91 to 891 1 to 815       815/835
(97 %)
16 diff
(98.1 %id)
TI_57189556   .c 94 to 797 51 to 761       711/711
(100 %)
16 diff
(97.8 %id)
BI860670 breast, mammary adenocarcinoma, cell line .c 95 to 797 1 to 710       710/710
(100 %)
16 diff
(97.8 %id)
FN095075 breast carcinoma .c 108 to 193 87 to 3     Submitted on the opposite strand 85/87
(97 %)
0 diff
(100 %id)
CR602682 Neuroblastoma Cot 25-normalized .c 109 to 894 1 to 786       786/786
(100 %)
0 diff
(100 %id)
BX364504 Neuroblastoma Cot 25-normalized .c 109 to 858 749 to 1       749/749
(100 %)
3 diff
(99.6 %id)
BX364505 Neuroblastoma Cot 25-normalized .c 109 to 894 1 to 785       785/785
(100 %)
1 diff
(99.9 %id)
BX394563 Neuroblastoma Cot 25-normalized .c 109 to 883 782 to 1       782/782
(100 %)
27 diff
(96.6 %id)
BQ278089 ovary, teratocarcinoma, cell line .c 109 to 895 807 to 14   AAA Submitted on the opposite strand 792/1084
(73 %)
25 diff
(97.7 %id)
BQ645464 hepatocellular carcinoma, cell line, Liver .c 109 to 824 1 to 716       716/876
(81 %)
16 diff
(98.2 %id)
BQ647867 hepatocellular carcinoma, cell line, Liver .c 109 to 899 1 to 792   AAA   792/792
(100 %)
3 diff
(99.7 %id)
CF130720 Chondrosarcoma Lung Metastasis cell lines, lung .c 125 to 890 1 to 763       763/806
(94 %)
7 diff
(99.2 %id)
TI_154192735   .c 125 to 890 42 to 804       763/995
(76 %)
7 diff
(99.3 %id)
BG506715 lung .c 139 to 860 1 to 721       721/722
(99 %)
19 diff
(97.4 %id)
AA046873 heart .c 149 to 531 2 to 382   fully sequenced,   381/382
(99 %)
2 diff
(99.5 %id)
AA135083 colon, tumor .c 149 to 500 7 to 368       362/390
(92 %)
17 diff
(95.7 %id)
TI_159723659   .c 149 to 892 822 to 79   AAA   744/1023
(72 %)
1 diff
(100.0 %id)
BM978080 lung .c 149 to 898 768 to 19   AAA   750/750
(100 %)
0 diff
(100 %id)
CD367488 Alveolar Macrophage, lung .c 149 to 898 767 to 19   AAA   749/750
(99 %)
1 diff
(99.9 %id)
FN095229 breast carcinoma .c 151 to 227 1 to 77       77/78
(98 %)
1 diff
(98.8 %id)
CB161716 Liver .c 152 to 715 1 to 564       564/564
(100 %)
0 diff
(100 %id)
CB161726 Liver .c 152 to 713 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
BF758410 colon .c 153 to 347 8 to 201       194/206
(94 %)
9 diff
(95.7 %id)
BF830380 leiomios .c 155 to 347 1 to 192       192/197
(97 %)
15 diff
(92.4 %id)
FN082907 breast carcinoma .c 155 to 233 1 to 78       78/78
(100 %)
1 diff
(98.8 %id)
AA302581 aorta .c 163 to 441 1 to 279       279/296
(94 %)
2 diff
(99.4 %id)
FN056659 breast carcinoma .c 165 to 255 91 to 1     Submitted on the opposite strand 91/91
(100 %)
0 diff
(100 %id)
AI921080 adenocarcinoma, Pancreas .c 168 to 898 733 to 3       731/733
(99 %)
16 diff
(97.9 %id)
AI986196 malignant melanoma, metastatic to lymphnode, skin .c 168 to 898 731 to 1       731/734
(99 %)
10 diff
(98.7 %id)
BQ428175 melanotic melanoma, skin .c 205 to 891 1 to 697       697/706
(98 %)
11 diff
(98.5 %id)
AI720586 colon .c 207 to 896 691 to 1       691/691
(100 %)
14 diff
(98.0 %id)
AL521762 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 208 to 884 677 to 1   fully sequenced,   677/677
(100 %)
6 diff
(99.2 %id)
BX379849 Placenta Cot 25-normalized .c 208 to 871 660 to 1   fully sequenced,   660/660
(100 %)
6 diff
(99.1 %id)
CA945185 Human Lung Epithelial cells, lung .c 211 to 892 700 to 19   AAA   682/682
(100 %)
0 diff
(100 %id)
CA307138 Alveolar Macrophage, lung .c 219 to 894 692 to 17   AAA   676/676
(100 %)
0 diff
(100 %id)
BU730804 eye, RPE and Choroid .c 228 to 898 690 to 19   AAA   672/672
(100 %)
1 diff
(99.9 %id)
AI889328 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 239 to 894 665 to 9       657/712
(92 %)
12 diff
(98.4 %id)
CA308048 Alveolar Macrophage, lung .c 239 to 897 677 to 19   AAA   659/666
(98 %)
1 diff
(99.9 %id)
AW129664 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 242 to 898 675 to 21   AAA   655/661
(99 %)
20 diff
(97.0 %id)
BF058408 fibrotheoma, ovary .c 244 to 898 664 to 11   AAA   654/682
(95 %)
6 diff
(99.2 %id)
BQ962819 epithelioid carcinoma cell line, Pancreas .c 252 to 891 697 to 55     Submitted on the opposite strand 643/963
(66 %)
24 diff
(97.6 %id)
BU941112 mixed (pool of 40 RNAs) .c 258 to 899 1 to 642       642/645
(99 %)
2 diff
(99.7 %id)
BQ016166 lung, Metastatic Chondrosarcoma .c 262 to 899 656 to 19   AAA   638/638
(100 %)
2 diff
(99.7 %id)
CA424744 cell lines, Chondrosarcoma .c 268 to 894 643 to 17   AAA   627/627
(100 %)
0 diff
(100 %id)
CK904482 Islets of Langerhans, Pancreas .c 270 to 857 1 to 588       588/588
(100 %)
0 diff
(100 %id)
BM505502 insulinoma, Pancreas .c 273 to 898 641 to 16   AAA   626/626
(100 %)
0 diff
(100 %id)
BM023553 Islets of Langerhans, Pancreas .c 286 to 787 1 to 502       502/502
(100 %)
4 diff
(99.3 %id)
BQ773103 Chondrosarcoma Cell line .c 287 to 898 629 to 19   AAA   611/611
(100 %)
1 diff
(99.9 %id)
BM313826 insulinoma, Pancreas .c 291 to 898 623 to 16   AAA   608/608
(100 %)
0 diff
(100 %id)
W32576 heart .c 304 to 655 1 to 352   fully sequenced,   352/352
(100 %)
12 diff
(96.6 %id)
AA025859 heart .c 304 to 478 1 to 175       175/176
(99 %)
3 diff
(98.3 %id)
BM453909 melanotic melanoma, skin .c 305 to 892 13 to 600   AAA   588/600
(98 %)
6 diff
(99.0 %id)
AI494337 B-cell, chronic lymphotic leukemia .c 312 to 898 588 to 2       587/588
(99 %)
3 diff
(99.5 %id)
BM023261 Islets of Langerhans, Pancreas .c 327 to 897 587 to 17   AAA   571/574
(99 %)
12 diff
(98.0 %id)
BM760450 lymph node, stomach .c 330 to 468 1 to 139       139/139
(100 %)
1 diff
(99.3 %id)
CF130699 Chondrosarcoma Lung Metastasis cell lines, lung .c 337 to 897 1 to 561   AAA   561/561
(100 %)
0 diff
(100 %id)
TI_154192711   .c 337 to 897 51 to 611   AAA   561/561
(100 %)
0 diff
(100 %id)
BQ010412 Chondrosarcoma, Left Pubic Bone .c 345 to 892 566 to 19   AAA   548/560
(97 %)
0 diff
(100 %id)
BE043924 lymph node, lymphoma, follicular mixed small and largecell .c 346 to 898 553 to 1       553/584
(94 %)
4 diff
(99.4 %id)
BG655850 Pancreas, Purified pancreatic islet .c 351 to 898 550 to 1     Submitted on the opposite strand 550/550
(100 %)
2 diff
(99.7 %id)
CK904481 Islets of Langerhans, Pancreas .c 351 to 897 563 to 17   AAA   547/547
(100 %)
3 diff
(99.5 %id)
N37025.
matches multiple genes
melanocyte .c 358 to 894 535 to 1     also hits gene CITED1 535/535
(100 %)
12 diff
(97.8 %id)
BM054813 Islets of Langerhans, Pancreas .c 369 to 897 545 to 17   AAA   529/529
(100 %)
2 diff
(99.7 %id)
R58465   .c 373 to 591 1 to 216       216/216
(100 %)
3 diff
(98.7 %id)
BM662723 eye, RPE and Choroid .c 373 to 898 543 to 18   AAA   526/526
(100 %)
4 diff
(99.3 %id)
BQ018292 lung, Metastatic Chondrosarcoma .c 380 to 894 531 to 17   AAA   515/515
(100 %)
0 diff
(100 %id)
AA878881 2 pooled tumors (clear cell type), Kidney .c 381 to 898 519 to 4       516/522
(98 %)
3 diff
(99.5 %id)
AI937111 anaplastic oligodendroglioma, brain .c 381 to 894 522 to 9       514/522
(98 %)
0 diff
(100 %id)
BP430813   .c 381 to 741 18 to 378       361/378
(95 %)
7 diff
(98.2 %id)
AW005094 anaplastic oligodendroglioma, brain .c 389 to 898 512 to 3       510/512
(99 %)
0 diff
(100 %id)
FN115475 breast carcinoma .c 407 to 496 1 to 87       87/88
(98 %)
7 diff
(92.1 %id)
AI033606 parathyroid gland, parathyroid tumor .c 411 to 894 494 to 11   AAA   484/484
(100 %)
5 diff
(99.0 %id)
AI131298 heart .c 412 to 895 485 to 2       484/485
(99 %)
0 diff
(100 %id)
BU070298 insulinoma, Pancreas .c 416 to 898 498 to 16   fully sequenced, AAA   483/483
(100 %)
0 diff
(100 %id)
BU071257 insulinoma, Pancreas .c 416 to 898 498 to 16   fully sequenced, AAA   483/483
(100 %)
0 diff
(100 %id)
AI264608 Kidney .c 421 to 898 486 to 8       479/486
(98 %)
1 diff
(99.8 %id)
AI338120 lung .c 422 to 893 476 to 5       472/478
(98 %)
1 diff
(99.8 %id)
AA708471 pineal gland .c 423 to 898 477 to 4       474/477
(99 %)
3 diff
(99.4 %id)
AA236897 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 423 to 893 475 to 5       471/475
(99 %)
0 diff
(100 %id)
AA588125 colon, tumor .c 423 to 893 473 to 4       470/473
(99 %)
6 diff
(98.8 %id)
AA553372 Schwannoma tumor .c 423 to 893 468 to 1       468/468
(100 %)
4 diff
(99.2 %id)
AA876306 2 pooled tumors (clear cell type), Kidney .c 423 to 898 487 to 14   AAA   474/474
(100 %)
8 diff
(98.4 %id)
AA932773 Kidney .c 423 to 853 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
AI003886   .c 423 to 895 475 to 5       471/475
(99 %)
3 diff
(99.4 %id)
AI075087 pooled germ cell tumors .c 423 to 892 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
AI039900   .c 423 to 898 485 to 9       477/485
(98 %)
2 diff
(99.6 %id)
AI160495 heart .c 423 to 892 480 to 11   AAA   470/470
(100 %)
3 diff
(99.4 %id)
AI148620 placenta .c 423 to 894 482 to 11   AAA   472/472
(100 %)
4 diff
(99.2 %id)
AI150026   .c 423 to 898 484 to 9       476/484
(98 %)
0 diff
(100 %id)
AI208747   .c 423 to 893 474 to 4       471/474
(99 %)
0 diff
(100 %id)
AI284321 Kidney .c 423 to 894 473 to 2       472/473
(99 %)
7 diff
(98.6 %id)
AI272130 Kidney .c 423 to 549 127 to 1       127/127
(100 %)
3 diff
(97.7 %id)
AI384070 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 423 to 898 476 to 1       476/476
(100 %)
0 diff
(100 %id)
AI566174 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 423 to 894 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AA431781   .c 424 to 898 476 to 5   fully sequenced,   472/476
(99 %)
3 diff
(99.4 %id)
BM840595 lymph node, stomach .c 424 to 657 1 to 234       234/234
(100 %)
1 diff
(99.6 %id)
AI860826 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 426 to 892 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AI460207 brain, meningioma .c 429 to 898 472 to 3       470/472
(99 %)
0 diff
(100 %id)
AI860722 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 429 to 892 477 to 14   AAA   464/464
(100 %)
6 diff
(98.8 %id)
BM850805 stomach .c 429 to 890 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
W86128 liver and spleen .c 432 to 869 1 to 440   fully sequenced,   440/440
(100 %)
11 diff
(97.5 %id)
DB567694 hypothalamus .c 433 to 899 1 to 467     Submitted on the opposite strand 467/467
(100 %)
5 diff
(99.0 %id)
BF835747 head_neck .c 434 to 839 415 to 10     Submitted on the opposite strand 406/415
(97 %)
0 diff
(100 %id)
AW245638 lung, small cell carcinoma .c 437 to 898 472 to 11   fully sequenced, AAA   462/462
(100 %)
2 diff
(99.6 %id)
AW168829 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 438 to 898 466 to 6       461/466
(98 %)
5 diff
(99.0 %id)
AW173632 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 444 to 898 461 to 7       455/461
(98 %)
0 diff
(100 %id)
AA741373 germinal center B cell .c 450 to 892 450 to 11   AAA   440/440
(100 %)
5 diff
(98.9 %id)
AA991703   .c 450 to 897 455 to 10       446/455
(98 %)
2 diff
(99.6 %id)
AI148963   .c 450 to 897 451 to 4       448/451
(99 %)
0 diff
(100 %id)
AI457446 colon, moderately-differentiated adenocarcinoma .c 450 to 898 450 to 2       449/450
(99 %)
3 diff
(99.4 %id)
AI078614   .c 456 to 826 371 to 1       371/371
(100 %)
1 diff
(99.8 %id)
CR983242 T-Lymphocytes .c 460 to 895 1 to 437   AAA   437/437
(100 %)
6 diff
(98.7 %id)
BU627646 Bone, Enchondroma cell line .c 462 to 895 452 to 19   AAA   434/434
(100 %)
1 diff
(99.8 %id)
AA429067 ovarian tumor, ovary .c 466 to 885 1 to 418   fully sequenced,   420/420
(100 %)
8 diff
(98.1 %id)
AA046830 heart .c 470 to 893 423 to 2   fully sequenced,   422/423
(99 %)
2 diff
(99.6 %id)
AA603077 normal prostate, Prostate .c 474 to 898 428 to 7       422/428
(98 %)
0 diff
(100 %id)
AA024821 heart .c 475 to 900 425 to 1   fully sequenced,   425/425
(100 %)
8 diff
(98.2 %id)
AI027256   .c 477 to 898 438 to 17   AAA   422/422
(100 %)
0 diff
(100 %id)
AW391884 stomach .c 479 to 881 403 to 1       403/403
(100 %)
5 diff
(98.8 %id)
AA024927 heart .c 480 to 900 1 to 420   fully sequenced, AAA   420/420
(100 %)
9 diff
(97.9 %id)
AI023121 parathyroid gland, parathyroid tumor .c 481 to 897 425 to 11   AAA   415/415
(100 %)
3 diff
(99.3 %id)
AA428777 ovarian tumor, ovary .c 484 to 901 420 to 3   fully sequenced,   418/420
(99 %)
0 diff
(100 %id)
N68925 lung .c 507 to 898 398 to 7       392/399
(98 %)
3 diff
(99.3 %id)
T47528 placenta .c 509 to 791 286 to 1       286/286
(100 %)
3 diff
(99.0 %id)
N31929 melanocyte .c 527 to 914 403 to 16   AAA   388/388
(100 %)
6 diff
(98.5 %id)
BQ581773 insulinoma, Pancreas .c 562 to 898 352 to 16   fully sequenced, AAA   337/337
(100 %)
0 diff
(100 %id)
W73740 heart .c 564 to 897 332 to 1       332/337
(98 %)
3 diff
(99.2 %id)
BQ325529 colon_ins .c 572 to 815 254 to 10       245/265
(92 %)
1 diff
(99.7 %id)
EL948087 eyeball .c 572 to 900 1 to 329   AAA   329/329
(100 %)
3 diff
(99.1 %id)
AI016156   .c 573 to 687 115 to 1       115/115
(100 %)
1 diff
(99.2 %id)
TI_57218516   .c 583 to 898 33 to 348   AAA   316/348
(90 %)
0 diff
(100 %id)
BI754394 brain .c 584 to 898 1 to 315   AAA   315/315
(100 %)
0 diff
(100 %id)
T89276 liver and spleen .c 592 to 886 295 to 1       295/335
(88 %)
3 diff
(99.2 %id)
AA450365   .c 593 to 898 309 to 7       303/309
(98 %)
0 diff
(100 %id)
AA134986 colon, tumor .c 598 to 857 266 to 7       260/266
(97 %)
0 diff
(100 %id)
H68907 liver and spleen .c 612 to 897 287 to 3       285/287
(99 %)
0 diff
(100 %id)
W02115 heart .c 625 to 895 270 to 1   fully sequenced,   270/270
(100 %)
3 diff
(98.9 %id)
W20382 heart .c 639 to 898 258 to 1       258/258
(100 %)
3 diff
(98.9 %id)
AA150759 uterus .c 643 to 898 256 to 1       256/256
(100 %)
2 diff
(99.3 %id)
N36140 melanocyte .c 690 to 894 204 to 1       204/204
(100 %)
2 diff
(99.1 %id)
W86148 liver and spleen .c 717 to 892 174 to 1   fully sequenced,   174/174
(100 %)
2 diff
(98.9 %id)
H81932 liver and spleen .c 738 to 894 157 to 1       157/157
(100 %)
3 diff
(98.1 %id)
AA025860 heart .c 742 to 892 151 to 1       151/151
(100 %)
3 diff
(98.1 %id)
W15447 parathyroid gland, parathyroid tumor .c 785 to 897 134 to 23   AAA   112/112
(100 %)
2 diff
(98.3 %id)
BM708550 eye, RPE and Choroid .d 1 to 463 5 to 467   tiling clone,   467/467
(100 %)
0 diff
(100 %id)
BU730845 eye, RPE and Choroid .d 506 to 1239 750 to 19   tiling clone, AAA   732/733
(99 %)
4 diff
(99.5 %id)
TI_149309284   .d 520 to 1233 805 to 93   AAA   713/950
(75 %)
8 diff
(99.2 %id)
BU687694 lung .d 520 to 1233 731 to 19   tiling clone, AAA   713/720
(99 %)
8 diff
(98.9 %id)
AA209292   .e 1 to 526 8 to 539       539/635
(84 %)
20 diff
(96.9 %id)
BU856941 adenocarcinoma, cell line, breast .e 1 to 817 6 to 833 exact tiling clone,   833/881
(94 %)
15 diff
(98.3 %id)
BG474096 eye, retinoblastoma .e 1 to 672 3 to 674 H152Q P155T D190E     674/674
(100 %)
6 diff
(99.2 %id)
BG913424 anaplastic oligodendroglioma with 1p/19qloss, brain .e 1 to 718 1 to 719 H152Q     719/720
(99 %)
7 diff
(99.1 %id)
R84537 brain .e 8 to 391 1 to 386       386/496
(77 %)
3 diff
(99.4 %id)
BG655926 Pancreas, Purified pancreatic islet .e 11 to 502 59 to 550       538/550
(97 %)
6 diff
(99.0 %id)
CD686770 normal nasopharynx .e 11 to 275 63 to 327       320/327
(97 %)
9 diff
(97.3 %id)
CD686993 normal nasopharynx .e 11 to 600 72 to 661       650/661
(98 %)
7 diff
(99.0 %id)
BG762486 melanotic melanoma, high MDR (cell line), skin .e 12 to 840 1 to 833 exact tiling clone,   833/992
(83 %)
12 diff
(98.8 %id)
H47782 liver and spleen .e 52 to 438 1 to 395       392/399
(98 %)
11 diff
(97.3 %id)
H75718 liver and spleen .e 52 to 379 1 to 329       329/329
(100 %)
1 diff
(99.7 %id)
R72904 breast .e 54 to 449 1 to 397       397/459
(86 %)
3 diff
(99.4 %id)
CR991531 T-Lymphocytes .e 61 to 782 1 to 723       723/723
(100 %)
1 diff
(99.9 %id)
H75646 liver and spleen .e 551 to 847 297 to 2   tiling clone,   296/297
(99 %)
0 diff
(100 %id)
R73541 breast .e 634 to 847 213 to 1   tiling clone,   213/213
(100 %)
8 diff
(96.3 %id)
DB094353 testis .f -11 to 546 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BC050712 Colon, Kidney, Stomach, adult, whole pooled .f 1 to 1826 3 to 1828 exact tiling clone, available from MGC, AAA   1828/1828
(100 %)
1 diff
(100.0 %id)
BI760985 pooled colon, kidney, stomach .f 2 to 901 4 to 895   available from MGC,   892/896
(99 %)
25 diff
(97.3 %id)
TI_57150783   .f 2 to 901 34 to 925       892/926
(96 %)
25 diff
(97.4 %id)
DA090800 cerebellum .f 11 to 527 56 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA268741 caudate nucleus .f 11 to 519 61 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA392348 thalamus .f 11 to 535 56 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA439196 tongue, tumor tissue .f 11 to 534 26 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BY795904 eye .f 11 to 540 24 to 553       553/553
(100 %)
0 diff
(100 %id)
DA949203 Spleen .f 11 to 554 26 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
BM152814 leukopheresis .f 11 to 178 33 to 199       199/230
(86 %)
9 diff
(96.1 %id)
BM152101 leukopheresis .f 11 to 162 33 to 184       184/184
(100 %)
8 diff
(95.7 %id)
DB007173 cervix, tumor tissue .f 11 to 527 26 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DB034688 testis .f 11 to 567 26 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB079920 testis .f 11 to 481 92 to 562   capped   529/529
(100 %)
1 diff
(99.9 %id)
DB100643 testis .f 11 to 246 26 to 261   capped   260/260
(100 %)
1 diff
(99.7 %id)
DB104183 thymus .f 11 to 512 56 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB142836 thymus .f 11 to 484 59 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DB164873 thymus .f 11 to 535 26 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DB189673 lung, tumor tissue .f 11 to 434 26 to 449   capped   448/448
(100 %)
0 diff
(100 %id)
DB262153 uterus .f 11 to 557 26 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
CR995090 T-Lymphocytes .f 61 to 457 1 to 397       397/401
(99 %)
1 diff
(99.8 %id)
AA419131 ovarian tumor, ovary .f 1523 to 1847 2 to 323       322/330
(97 %)
9 diff
(97.3 %id)
AA482601 ovarian tumor, ovary .f 1617 to 1847 236 to 8       229/236
(97 %)
0 diff
(100 %id)
DA929517 small intestine .g 1 to 561 4 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
DR006700 Spleen .g 8 to 702 8 to 703   tiling clone,   698/703
(99 %)
9 diff
(98.8 %id)
DA060728 cerebellum .g 11 to 529 26 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA091266 cerebellum .g 11 to 569 26 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
DA175397 amygdala .g 11 to 513 56 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA269746 caudate nucleus .g 11 to 527 26 to 544   capped   543/544
(99 %)
2 diff
(99.7 %id)
DA511136 brain .g 11 to 511 68 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB016376 esophageal, tumor tissue .g 11 to 525 61 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB171307 kidney, tumor tissue .g 11 to 495 26 to 510   capped   509/509
(100 %)
2 diff
(99.7 %id)
CF127331 Chondrosarcoma Lung Metastasis cell lines, lung .g 563 to 1174 1 to 613 E15G K16E A17G Y18L I19H ...     613/613
(100 %)
1 diff
(99.9 %id)
TI_154190886   .g 563 to 1393 50 to 875 E15G K16E A17G Y18L I19H ... tiling clone, AAA   826/826
(100 %)
9 diff
(99.0 %id)
BI829563 brain, medulla .h 11 to 597 24 to 610 G141A T142R W143G L144* tiling clone,   610/610
(100 %)
2 diff
(99.7 %id)
TI_57176822   .h 11 to 597 91 to 677 G141A T142R W143G L144*     616/677
(90 %)
8 diff
(98.9 %id)
DA657762   .i 11 to 550 29 to 571   capped   570/570
(100 %)
5 diff
(99.2 %id)
DB116837 thymus .i 11 to 458 26 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DB150169 thymus .i 11 to 557 26 to 574   tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
AW953433   .i 35 to 617 9 to 593   tiling clone,   585/593
(98 %)
9 diff
(98.5 %id)
TI_57182937   .i 368 to 1076 27 to 763 E3* tiling clone,   733/774
(94 %)
57 diff
(92.7 %id)
BI771079 pooled lung and spleen .i 377 to 1076 1 to 728 E3* tiling clone,   724/739
(97 %)
52 diff
(93.0 %id)
BI909182 leukocyte .j 1 to 722 3 to 723 Q140R T141R V142S S143A Q144S ... tiling clone,   723/723
(100 %)
1 diff
(99.9 %id)
TI_57236748   .j 1 to 722 32 to 753 Q140R T141R V142S S143A Q144S ... tiling clone,   724/753
(96 %)
11 diff
(98.6 %id)
DA727407   .j 11 to 680 26 to 695   tiling clone, capped   694/706
(98 %)
9 diff
(98.8 %id)
DA165291 amygdala .k 11 to 510 61 to 564   capped   563/563
(100 %)
6 diff
(99.0 %id)
DA627658 Kidney .k 11 to 506 49 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB147775 thymus .k 11 to 546 26 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
TI_149307558   .k 456 to 1207 851 to 106 L14V tiling clone,   746/1055
(70 %)
19 diff
(98.2 %id)
BM979318 lung, Primary Lung Epithelial Cells .k 620 to 1206 605 to 19   tiling clone, AAA   587/587
(100 %)
2 diff
(99.7 %id)
TI_57174235   .l 1 to 828 21 to 845       825/847
(97 %)
12 diff
(98.6 %id)
CR746208 brain .l 4 to 239 1 to 236   tiling clone,   236/236
(100 %)
1 diff
(99.6 %id)
BI826623 brain, medulla .l 10 to 828 1 to 815   tiling clone,   815/817
(99 %)
8 diff
(99.1 %id)
H22541 brain .l 71 to 304 1 to 236       236/236
(100 %)
3 diff
(98.8 %id)
BG960313 colon .l 473 to 717 1 to 249       249/249
(100 %)
7 diff
(97.2 %id)
H41815 brain .l 755 to 989 317 to 83       235/317
(74 %)
0 diff
(100 %id)
AA935169 Kidney, kidney tumor .l 757 to 980 224 to 1   tiling clone,   224/224
(100 %)
0 diff
(100 %id)
BM474006 leiomyosarcoma, uterus .l 775 to 1572 1 to 800   tiling clone,   800/1013
(78 %)
15 diff
(98.6 %id)
BY995276   .l 1467 to 2170 1 to 704 exact tiling clone,   704/704
(100 %)
5 diff
(99.3 %id)
BI910846 leukocyte .m 1 to 844 1 to 850 G15V N16E K17Q P18A E19G ... tiling clone,   850/850
(100 %)
11 diff
(98.8 %id)
TI_57236518   .m 1 to 844 31 to 880 G15V N16E K17Q P18A E19G ...     850/880
(96 %)
11 diff
(98.8 %id)
AA481370 ovarian tumor, ovary .n 1 to 232 1 to 232   tiling clone,   232/232
(100 %)
1 diff
(99.6 %id)
W95960 heart .n 7 to 237 1 to 231       231/231
(100 %)
0 diff
(100 %id)
CA772667 Pancreas, Purified pancreatic islet .n 10 to 553 1 to 543   tiling clone, fully sequenced,   543/543
(100 %)
6 diff
(98.9 %id)
AA436426 ovarian tumor, ovary .n 521 to 974 465 to 14   tiling clone, AAA   452/544
(83 %)
9 diff
(98.4 %id)
CA771812 Pancreas, Purified pancreatic islet .n 521 to 974 455 to 3   tiling clone, fully sequenced,   453/455
(99 %)
2 diff
(99.6 %id)
W95672 heart .n 543 to 970 430 to 1   tiling clone,   430/434
(99 %)
9 diff
(98.0 %id)
TI_159714821   .o 1 to 853 929 to 95 V27A S28R L29S F30S I31S ... tiling clone, AAA   835/983
(84 %)
24 diff
(97.6 %id)
CB306872 Human Lung Epithelial cells, lung .o 153 to 853 719 to 19 V27A S28R L29S F30S I31S ... tiling clone, AAA   701/701
(100 %)
3 diff
(99.6 %id)
BQ073112 leukocyte .p 1 to 692 9 to 710 exact tiling clone,   710/1142
(62 %)
30 diff
(97.4 %id)
BQ776873 Pancreas, Purified pancreatic islet .p 290 to 849 10 to 569   tiling clone,   560/569
(98 %)
6 diff
(99.0 %id)
BQ417046 Pancreas, Purified pancreatic islet .p 297 to 764 1 to 468   tiling clone,   468/468
(100 %)
0 diff
(100 %id)
BQ631883 Pancreas, Purified pancreatic islet .p 314 to 799 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
CR984062 T-Lymphocytes .p 945 to 1575 1 to 632   tiling clone,   632/632
(100 %)
1 diff
(99.9 %id)
BQ416740 Pancreas, Purified pancreatic islet .p 1011 to 1576 566 to 1       566/566
(100 %)
9 diff
(98.5 %id)
BQ632179 Pancreas, Purified pancreatic islet .p 1011 to 1576 566 to 1   tiling clone,   566/566
(100 %)
0 diff
(100 %id)
BQ776551 Pancreas, Purified pancreatic islet .p 1011 to 1576 566 to 1       566/566
(100 %)
1 diff
(99.9 %id)
AA724356 parathyroid gland, parathyroid tumor .q 1 to 426 435 to 13 C31A A32P W33G R34D S35P ... tiling clone, AAA   423/423
(100 %)
4 diff
(99.1 %id)
AA483824 colon .q 102 to 289 187 to 1       187/187
(100 %)
1 diff
(99.5 %id)
DB112240 thymus .r -11 to 573 2 to 586 exact tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
CN315341 embryonic stem cells, cell lines H1, H7, andH9 .r 1 to 414 1 to 414       414/414
(100 %)
4 diff
(99.1 %id)
DA140309 alzheimer cortex .r 11 to 544 26 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
BC050438 Brain, fetal, whole pooled .r 11 to 2042 35 to 2066 exact tiling clone, available from MGC, AAA   2066/2066
(100 %)
3 diff
(99.9 %id)
BM928371 brain .r 11 to 914 34 to 950 exact available from MGC,   950/1151
(82 %)
33 diff
(97.2 %id)
DB199562 trachea .r 11 to 533 26 to 548 exact capped   547/547
(100 %)
1 diff
(99.9 %id)
CD250878 brain, Pituitary .r 626 to 1165 1 to 546       546/1121
(48 %)
21 diff
(98.2 %id)
BG949030 bocio_tumor .r 679 to 1056 381 to 2       380/382
(99 %)
0 diff
(100 %id)
BF928128 nervous_tumor .r 951 to 1234 292 to 11     Submitted on the opposite strand 282/300
(94 %)
13 diff
(95.7 %id)
CN293919 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .r 985 to 1203 1 to 219       219/219
(100 %)
1 diff
(99.6 %id)
BM547231 ovary (pool of 3) .s -8 to 920 1 to 948 exact tiling clone,   948/1096
(86 %)
37 diff
(96.7 %id)
DA178125 amygdala .s 11 to 527 26 to 542 exact capped   541/541
(100 %)
0 diff
(100 %id)
DB046482 testis .s 11 to 509 67 to 565 A34X capped   564/564
(100 %)
1 diff
(99.9 %id)
DB108746 thymus .s 11 to 554 26 to 569 exact tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
H00150 whole brain .s 757 to 1103 1 to 348   tiling clone,   348/353
(98 %)
5 diff
(98.6 %id)
AF445417   .s 795 to 2416 1 to 1624   tiling clone, AAA   1624/1624
(100 %)
6 diff
(99.7 %id)
BX482602   .s 924 to 1489 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
H05078 whole brain .s 2207 to 2420 227 to 15   tiling clone, AAA   213/213
(100 %)
2 diff
(99.1 %id)
DA974299 synovial membrane tissue from rheumatioidarthritis .t 1 to 460 10 to 469 exact capped   468/468
(100 %)
1 diff
(99.8 %id)
BI772407 pooled lung and spleen .t 1 to 770 1 to 774 exact tiling clone,   774/775
(99 %)
28 diff
(96.4 %id)
TI_57179980   .t 1 to 770 29 to 802 exact     774/803
(96 %)
28 diff
(96.6 %id)
DA432954 cord Blood .t 11 to 513 45 to 547 exact capped   546/546
(100 %)
1 diff
(99.9 %id)
DA530595 brain .t 11 to 573 26 to 588 exact capped   587/587
(100 %)
2 diff
(99.7 %id)
DA552416   .t 11 to 505 26 to 520 exact tiling clone, capped   519/519
(100 %)
1 diff
(99.9 %id)
DB100959 thymus .t 11 to 691 27 to 714 exact tiling clone, capped   713/732
(97 %)
11 diff
(98.5 %id)
BF804070 colon_ins .t 404 to 544 159 to 16     Submitted on the opposite strand 144/168
(85 %)
0 diff
(100 %id)
BM715263 eye, human retina .t 1785 to 2435 1 to 652   tiling clone, AAA   652/652
(100 %)
1 diff
(99.9 %id)
N48072 multiple sclerosis lesions .t 2034 to 2440 418 to 8       411/434
(94 %)
13 diff
(97.1 %id)
DB342150 thymus .t 2034 to 2458 426 to 1   tiling clone,   426/521
(81 %)
7 diff
(98.7 %id)
BM547167 brain, hippocampus .t 2036 to 2440 14 to 418       405/458
(88 %)
8 diff
(98.3 %id)
TI_151733748   .t 2038 to 2435 476 to 80   AAA   397/936
(42 %)
6 diff
(99.4 %id)
BE773432 prostate_tumor .t 2042 to 2425 412 to 29       384/412
(93 %)
3 diff
(99.3 %id)
BI916685 brain .t 2043 to 2435 1 to 393   AAA   393/393
(100 %)
2 diff
(99.5 %id)
TI_57240167   .t 2045 to 2435 31 to 421   AAA   391/421
(92 %)
6 diff
(98.6 %id)
N52649 liver and spleen .t 2046 to 2439 407 to 13   AAA   395/395
(100 %)
10 diff
(97.5 %id)
AW005162 anaplastic oligodendroglioma, brain .t 2046 to 2435 395 to 6       390/471
(82 %)
20 diff
(95.8 %id)
AI784449 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .t 2049 to 2435 393 to 6       388/393
(98 %)
11 diff
(97.3 %id)
BQ188941 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 2049 to 2435 1 to 387   fully sequenced, AAA   387/387
(100 %)
0 diff
(100 %id)
BQ890455 dorsal root ganglia .t 2051 to 2433 1 to 383   AAA   383/383
(100 %)
0 diff
(100 %id)
F27256 pectoral muscle (after mastectomy) .t 2058 to 2346 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
AJ572029 pectoral muscle (after mastectomy) .t 2060 to 2431 12 to 384       373/384
(97 %)
6 diff
(98.5 %id)
AJ573891 pectoral muscle (after mastectomy) .t 2061 to 2435 1 to 376       376/376
(100 %)
10 diff
(97.4 %id)
BG152585 brain, glioblastoma without EGFR amplification .t 2061 to 2435 377 to 3       375/393
(95 %)
11 diff
(97.3 %id)
BE773433 prostate_tumor .t 2064 to 2415 352 to 1       352/352
(100 %)
1 diff
(99.8 %id)
W69551 heart .t 2064 to 2439 391 to 2     Submitted on the opposite strand 390/451
(86 %)
13 diff
(97.2 %id)
AA714295 synovial sarcoma .t 2076 to 2406 330 to 1       330/330
(100 %)
2 diff
(99.4 %id)
AA864986 Kidney .t 2078 to 2439 368 to 9       360/368
(97 %)
0 diff
(100 %id)
AA708015 pineal gland .t 2079 to 2439 391 to 33   AAA   359/359
(100 %)
11 diff
(97.0 %id)
AA291155 germinal center B cell .t 2079 to 2439 359 to 1       359/359
(100 %)
5 diff
(98.7 %id)
AI023014 parathyroid gland, parathyroid tumor .t 2079 to 2439 364 to 8       357/364
(98 %)
0 diff
(100 %id)
AW372091 breast .t 2094 to 2421 325 to 1       325/325
(100 %)
12 diff
(96.4 %id)
AW817424 stomach .t 2094 to 2422 329 to 1       329/329
(100 %)
1 diff
(99.7 %id)
AW168492 bowel (skin primary), metastatic melanoma to bowel .t 2094 to 2435 342 to 2       341/344
(99 %)
6 diff
(98.3 %id)
AW169447 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .t 2098 to 2439 360 to 19   AAA   342/347
(98 %)
6 diff
(98.3 %id)
AI439582 B-cell, chronic lymphotic leukemia .t 2101 to 2439 353 to 15   AAA   339/339
(100 %)
1 diff
(99.8 %id)
AA854864 parathyroid gland, parathyroid tumor .t 2102 to 2439 351 to 16   AAA   336/336
(100 %)
6 diff
(98.3 %id)
AI024324   .t 2102 to 2435 351 to 18   AAA   334/334
(100 %)
1 diff
(99.8 %id)
AI128940 senescent fibroblast .t 2102 to 2440 346 to 11   AAA   336/336
(100 %)
5 diff
(98.6 %id)
AI167338 senescent fibroblast .t 2102 to 2439 351 to 14   AAA   338/338
(100 %)
0 diff
(100 %id)
BG152789 fibrotheoma, ovary .t 2102 to 2435 338 to 5       334/338
(98 %)
4 diff
(98.9 %id)
AW393803 testis .t 2111 to 2308 198 to 2       197/198
(99 %)
0 diff
(100 %id)
AI685743 Prostate .t 2111 to 2436 328 to 3       326/328
(99 %)
0 diff
(100 %id)
AI567490 anaplastic oligodendroglioma, brain .t 2115 to 2433 319 to 1       319/319
(100 %)
0 diff
(100 %id)
BE698917 nervous_normal .t 2125 to 2390 271 to 1       271/271
(100 %)
0 diff
(100 %id)
BF952077 nervous_normal .t 2125 to 2370 266 to 21       246/290
(84 %)
0 diff
(100 %id)
AA524437 colon .t 2133 to 2439 306 to 1       306/328
(93 %)
19 diff
(94.3 %id)
AA745944 Kidney .t 2133 to 2434 300 to 1       300/303
(99 %)
2 diff
(99.4 %id)
AA480257 colon .t 2134 to 2442 307 to 1       307/312
(98 %)
4 diff
(98.8 %id)
AA618424 colon .t 2134 to 2439 307 to 5       303/307
(98 %)
0 diff
(100 %id)
FN122933 breast carcinoma .t 2137 to 2187 54 to 4     Submitted on the opposite strand 51/54
(94 %)
0 diff
(100 %id)
AA922411 squamous cell carcinoma from base of tongue, tongue .t 2142 to 2398 265 to 10       256/265
(96 %)
0 diff
(100 %id)
AW352212 head_neck .t 2147 to 2411 1 to 267       267/267
(100 %)
2 diff
(99.3 %id)
T51075 ovary .t 2149 to 2435 1 to 285       285/294
(96 %)
5 diff
(98.3 %id)
AI459958 colon .t 2150 to 2439 290 to 1       290/290
(100 %)
0 diff
(100 %id)
FN171386 breast carcinoma .t 2157 to 2244 1 to 86       86/86
(100 %)
2 diff
(97.7 %id)
AV740901 cord Blood .t 2161 to 2437 1 to 270   AAA   270/270
(100 %)
13 diff
(95.2 %id)
CA308437 Alveolar Macrophage, lung .t 2165 to 2439 290 to 16   AAA   275/275
(100 %)
0 diff
(100 %id)
CK300305 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 2168 to 2435 283 to 17   fully sequenced, AAA   267/267
(100 %)
1 diff
(99.7 %id)
BF955754 nervous_normal .t 2175 to 2360 1 to 186       186/196
(94 %)
1 diff
(99.5 %id)
BQ353569 head_neck .t 2178 to 2349 183 to 12       172/183
(93 %)
0 diff
(100 %id)
BQ354104 head_neck .t 2178 to 2349 183 to 12       172/183
(93 %)
0 diff
(100 %id)
AI198755 lung .t 2180 to 2438 262 to 4       259/262
(98 %)
0 diff
(100 %id)
AI219212 placenta .t 2181 to 2435 262 to 8       255/262
(97 %)
0 diff
(100 %id)
AW102622 pooled .t 2185 to 2435 263 to 13   AAA   251/251
(100 %)
1 diff
(99.7 %id)
FN166645 breast carcinoma .t 2189 to 2284 1 to 97       97/97
(100 %)
4 diff
(95.9 %id)
AA927566 pooled germ cell tumors .t 2189 to 2439 251 to 5       247/251
(98 %)
0 diff
(100 %id)
BQ010421 Chondrosarcoma, Left Pubic Bone .t 2193 to 2433 257 to 17   AAA   241/241
(100 %)
6 diff
(97.6 %id)
BF945163 nervous_normal .t 2204 to 2370 20 to 184       165/194
(85 %)
4 diff
(98.0 %id)
AW393799 testis .t 2210 to 2344 1 to 135       135/135
(100 %)
5 diff
(96.3 %id)
AA781686   .t 2212 to 2435 222 to 1       222/222
(100 %)
2 diff
(99.1 %id)
AV740936 cord Blood .t 2223 to 2437 1 to 214   AAA   214/214
(100 %)
8 diff
(96.3 %id)
AI381741 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t 2241 to 2441 201 to 1       201/201
(100 %)
0 diff
(100 %id)
AI885962 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .t 2241 to 2438 199 to 2       198/199
(99 %)
0 diff
(100 %id)
BE773427 prostate_tumor .t 2243 to 2415 1 to 173       173/173
(100 %)
0 diff
(100 %id)
GD136059   .t 2243 to 2439 1 to 197   AAA   197/197
(100 %)
5 diff
(97.5 %id)
AA505514 breast .t 2245 to 2435 223 to 35   AAA   189/189
(100 %)
2 diff
(99.0 %id)
BE936753 ovary .t 2248 to 2416 8 to 178       171/189
(90 %)
4 diff
(97.9 %id)
AI355459 colon, moderately-differentiated adenocarcinoma .t 2248 to 2433 196 to 11   AAA   186/191
(97 %)
0 diff
(100 %id)
AA596000 larynx .t 2260 to 2406 147 to 1       147/147
(100 %)
3 diff
(98.0 %id)
EC499103 Prostate .t 2272 to 2359 1 to 88       88/88
(100 %)
0 diff
(100 %id)
AI270927 breast, breast carcinoma in situ .t 2273 to 2436 10 to 173   AAA Submitted on the opposite strand 164/173
(94 %)
6 diff
(96.6 %id)
AI310791 bronchioalveolar carcinoma, lung .t 2273 to 2432 10 to 169   AAA Submitted on the opposite strand 160/169
(94 %)
7 diff
(95.9 %id)
AI349136 bronchioalveolar carcinoma, lung .t 2273 to 2433 10 to 170   AAA Submitted on the opposite strand 161/170
(94 %)
8 diff
(95.3 %id)
AI340523 bone marrow, stem cell 34+/38+ .t 2273 to 2436 10 to 173   AAA Submitted on the opposite strand 164/173
(94 %)
6 diff
(96.6 %id)
AW071336 bone marrow, stem cell 34+/38+ .t 2273 to 2437 10 to 174   AAA Submitted on the opposite strand 165/174
(94 %)
7 diff
(96.0 %id)
AW268223 invasive adenocarcinoma, lung .t 2273 to 2435 10 to 172   AAA Submitted on the opposite strand 163/172
(94 %)
6 diff
(96.6 %id)
BE042233 borderline ovarian carcinoma, ovary .t 2273 to 2439 39 to 205   AAA   167/205
(81 %)
6 diff
(97.1 %id)
AA724000 parathyroid gland, parathyroid tumor .t 2280 to 2439 158 to 1       158/158
(100 %)
1 diff
(99.4 %id)
FN150183 breast carcinoma .t 2287 to 2357 1 to 71       71/71
(100 %)
6 diff
(91.6 %id)
AI318180 early stage papillary serous carcinoma, ovary .t 2289 to 2439 1 to 151   AAA Submitted on the opposite strand 151/151
(100 %)
0 diff
(100 %id)
FN078016 breast carcinoma .t 2290 to 2356 1 to 67       67/67
(100 %)
0 diff
(100 %id)
AA479725 ovarian tumor, ovary .t 2290 to 2439 165 to 17   AAA   149/149
(100 %)
2 diff
(98.7 %id)
BE071115 breast .t 2293 to 2420 147 to 21     Submitted on the opposite strand 127/147
(86 %)
0 diff
(100 %id)
AW302931 invasive adenocarcinoma, lung .t 2296 to 2435 1 to 140   AAA Submitted on the opposite strand 140/140
(100 %)
0 diff
(100 %id)
FN061371 breast carcinoma .t 2298 to 2392 1 to 95       95/95
(100 %)
1 diff
(99.0 %id)
AA428056 ovarian tumor, ovary .t 2300 to 2439 156 to 17   AAA   140/140
(100 %)
3 diff
(97.9 %id)
AI088268 heart .t 2308 to 2439 131 to 1       131/131
(100 %)
2 diff
(98.5 %id)
AA995342 carcinoid, lung .t 2316 to 2434 118 to 1       118/118
(100 %)
2 diff
(98.4 %id)
BX328176   .t 2318 to 2439 1 to 120       120/126
(95 %)
7 diff
(94.5 %id)
AI061130   .t 2319 to 2435 117 to 1       117/117
(100 %)
3 diff
(97.5 %id)
AA235603 ovarian tumor, ovary .t 2322 to 2433 111 to 1       111/111
(100 %)
3 diff
(97.3 %id)
FN064278 breast carcinoma .t 2342 to 2400 60 to 1     Submitted on the opposite strand 60/61
(98 %)
1 diff
(98.4 %id)
AW517046 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .t 2355 to 2439 97 to 13   AAA   85/85
(100 %)
1 diff
(98.9 %id)
AI445816 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .t 2357 to 2440 84 to 1       84/84
(100 %)
0 diff
(100 %id)
AK091979 Kidney .u 11 to 2343 26 to 2357 exact tiling clone, available from FLJ,   2357/2357
(100 %)
3 diff
(99.9 %id)
AK310062 Spleen .u 11 to 817 68 to 874       874/874
(100 %)
3 diff
(99.7 %id)
DA636603 Kidney .u 11 to 573 26 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA790935 brain .u 11 to 442 26 to 457   capped   456/456
(100 %)
2 diff
(99.6 %id)
DA924457 small intestine .u 11 to 449 26 to 464   tiling clone, capped   463/463
(100 %)
0 diff
(100 %id)
DC389190 Spleen .u 11 to 442 68 to 499       499/499
(100 %)
2 diff
(99.6 %id)
DC408565 thymus .u 11 to 392 68 to 449       449/449
(100 %)
0 diff
(100 %id)
DB321041 Kidney .u 1814 to 2343 530 to 1 exact     530/530
(100 %)
0 diff
(100 %id)
AL557782 T cells from T cell leukemia .va 1 to 1014 5 to 1010   tiling clone,   1010/1049
(96 %)
16 diff
(98.5 %id)
AL579751 T cells from T cell leukemia .va 1095 to 2148 1049 to 1 D2X K3A L4P R5G L6D ... tiling clone,   1049/1074
(97 %)
16 diff
(98.6 %id)
BX440947 brain, fetal brain .vb 7 to 926 1 to 916   tiling clone,   916/973
(94 %)
22 diff
(97.8 %id)
AK090942 amygdala .vb 11 to 2126 26 to 2141 S52L tiling clone, available from FLJ,   2141/2141
(100 %)
3 diff
(99.9 %id)
DA043415 bladder .vb 11 to 556 28 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA161478 amygdala .vb 11 to 543 26 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA929348 small intestine .vb 11 to 471 26 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
DA954442 Spleen .vb 11 to 511 61 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
AA378375 synovial membrane .vb 262 to 579 1 to 319       319/322
(99 %)
7 diff
(97.9 %id)
CR986321 T-Lymphocytes .vb 818 to 1306 1 to 489       489/490
(99 %)
1 diff
(99.8 %id)
AA372118 parathyroid gland .vb 1570 to 1784 1 to 215       215/215
(100 %)
1 diff
(99.6 %id)
DB302168 amygdala .vb 1578 to 2126 550 to 1 S52L     550/550
(100 %)
2 diff
(99.7 %id)
AI689537 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vb 1649 to 2129 495 to 17 exact tiling clone, AAA   479/509
(94 %)
8 diff
(98.5 %id)
DA935260 Spleen .vc -11 to 572 2 to 587   tiling clone, capped   586/586
(100 %)
3 diff
(99.5 %id)
CB145648 Liver .vc 142 to 547 1 to 405   tiling clone,   405/405
(100 %)
1 diff
(99.8 %id)
CR591710 Placenta Cot 25-normalized .vc 284 to 1815 1 to 1532 exact     1532/1532
(100 %)
0 diff
(100 %id)
AA126362 uterus .vc 297 to 725 1 to 447       451/448
(100 %)
29 diff
(93.6 %id)
CR600507 placenta .vc 324 to 1892 1 to 1569 exact tiling clone,   1569/1569
(100 %)
0 diff
(100 %id)
AL542536 placenta .vc 324 to 1200 1 to 860   fully sequenced,   860/860
(100 %)
1 diff
(99.9 %id)
AL542535 placenta .vc 1170 to 1814 703 to 79 D15X L19P V27X K36X L37C ... fully sequenced,   625/703
(88 %)
27 diff
(96.2 %id)
AA126258 uterus .vc 1713 to 1947 243 to 11   tiling clone, AAA   233/233
(100 %)
4 diff
(98.3 %id)
BX379007 Placenta Cot 25-normalized .vd 1 to 831 10 to 836   tiling clone, fully sequenced,   828/836
(99 %)
1 diff
(99.9 %id)
TI_57237722   .vd 2 to 518 74 to 609       539/1257
(42 %)
29 diff
(97.7 %id)
DB247289 uterus .vd 11 to 665 26 to 677   capped   676/737
(91 %)
12 diff
(98.4 %id)
TI_57164801   .vd 26 to 733 25 to 735       711/737
(96 %)
16 diff
(97.9 %id)
TI_57164867   .vd 26 to 736 25 to 748       722/748
(96 %)
34 diff
(95.5 %id)
BI835391 pooled pancreas and spleen .vd 33 to 733 1 to 704       704/706
(99 %)
11 diff
(98.5 %id)
BI835941 pooled pancreas and spleen .vd 33 to 736 1 to 717       715/717
(99 %)
29 diff
(96.0 %id)
CX866786 embryonic stem .vd 266 to 1070 1 to 805   tiling clone,   805/805
(100 %)
0 diff
(100 %id)
BM478527 embryonal carcinoma, cell line, testis .vd 372 to 1219 1 to 856       856/1111
(77 %)
30 diff
(97.3 %id)
DA081646 cerebellum .vd 492 to 1039 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CN275445 embryonic stem cells, DMSO-treated H9 cellline .vd 530 to 1133 1 to 606       606/606
(100 %)
3 diff
(99.6 %id)
BE840119 prostate_normal .vd 649 to 1081 1 to 427       427/427
(100 %)
8 diff
(98.2 %id)
BI907482 leukocyte .vd 715 to 1496 1 to 780 H63Q Q72R T73R V74S S75A ... tiling clone,   780/780
(100 %)
7 diff
(99.2 %id)
TI_57232470   .vd 715 to 1496 61 to 840 H63Q Q72R T73R V74S S75A ...     780/840
(92 %)
11 diff
(98.7 %id)
BX379006 Placenta Cot 25-normalized .vd 801 to 1508 725 to 20 D15X D25X D35X L37C R38A ... tiling clone, fully sequenced,   706/725
(97 %)
6 diff
(99.2 %id)
DB350865 uterus .vd 1259 to 1649 391 to 1   tiling clone,   391/437
(89 %)
13 diff
(97.1 %id)
CR592521 fetal brain .ve 11 to 1619 42 to 1650 exact tiling clone,   1650/1650
(100 %)
0 diff
(100 %id)
AL534666 brain, fetal brain .ve 11 to 877 42 to 899   fully sequenced,   899/899
(100 %)
6 diff
(99.4 %id)
DA652139   .ve 11 to 535 26 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DN602014 human embryonic stem cells .ve 246 to 622 1 to 376       376/376
(100 %)
2 diff
(99.5 %id)
BX644038   .ve 256 to 980 1 to 725       725/725
(100 %)
6 diff
(99.2 %id)
CB153031 brain .ve 265 to 736 1 to 472       472/472
(100 %)
0 diff
(100 %id)
T20044   .ve 612 to 860 1 to 247       247/247
(100 %)
4 diff
(98.4 %id)
AL534665 brain, fetal brain .ve 847 to 1619 757 to 1 D25B K36N L37C R38A L39W ... fully sequenced,   757/757
(100 %)
4 diff
(99.5 %id)
BX380535 Placenta Cot 25-normalized .vf 11 to 786 31 to 803   tiling clone, fully sequenced,   803/803
(100 %)
12 diff
(98.6 %id)
BX380534 Placenta Cot 25-normalized .vf 756 to 1469 736 to 25 D15X N18K L19V R21X C22X ... tiling clone, fully sequenced,   712/718
(99 %)
34 diff
(95.3 %id)
BI769967 pooled lung and spleen .vg -11 to 609 1 to 621 exact     621/621
(100 %)
4 diff
(99.4 %id)
TI_57183391   .vg -11 to 609 106 to 726 exact     621/726
(85 %)
10 diff
(98.7 %id)
DR761920 embryonic stem .vg -8 to 799 7 to 814 exact tiling clone,   808/814
(99 %)
6 diff
(99.3 %id)
BI909886 leukocyte .vg 1 to 921 9 to 945 K47N T48D M49N Q50A A51S ...     945/955
(98 %)
51 diff
(94.7 %id)
TI_57237647   .vg 1 to 921 45 to 981 K47N T48D M49N Q50A A51S ...     945/991
(95 %)
51 diff
(94.9 %id)
BI909668 leukocyte .vg 1 to 518 8 to 544 A7V T8H P9A I11H G12R ...     542/1192
(45 %)
30 diff
(97.5 %id)
TI_57181307   .vg 1 to 734 71 to 805 exact     742/805
(92 %)
9 diff
(98.9 %id)
BI767367 pooled lung and spleen .vg 1 to 734 5 to 739 exact     739/739
(100 %)
3 diff
(99.6 %id)
BX325137   .vg 1 to 863 10 to 871 D37X     863/871
(99 %)
11 diff
(98.8 %id)
BM545834 ovary (pool of 3) .vg 4 to 780 1 to 791 exact     791/1042
(75 %)
22 diff
(97.9 %id)
DA016450 adrenal gland .vg 11 to 519 56 to 564 exact capped   563/563
(100 %)
1 diff
(99.9 %id)
DA268099 caudate nucleus .vg 11 to 525 56 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
DA381847 thalamus .vg 11 to 555 26 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
BP222435   .vg 11 to 565 26 to 582 exact     582/582
(100 %)
2 diff
(99.7 %id)
CR610765 Placenta Cot 25-normalized .vg 11 to 1440 31 to 1460 exact tiling clone,   1460/1460
(100 %)
0 diff
(100 %id)
DA515189 brain .vg 11 to 422 49 to 460 exact capped   459/459
(100 %)
0 diff
(100 %id)
BJ993911 hepatoblastoma .vg 11 to 508 26 to 523 exact     523/523
(100 %)
0 diff
(100 %id)
BI827987 brain, medulla .vg 11 to 810 24 to 828 F2C     828/830
(99 %)
10 diff
(98.8 %id)
BI770604 pooled lung and spleen .vg 11 to 802 39 to 845 H3S     845/845
(100 %)
20 diff
(97.7 %id)
BI907143 leukocyte .vg 11 to 494 23 to 527 G4R I5D A7S T8H P9A ...     527/764
(68 %)
35 diff
(95.5 %id)
TI_57183511   .vg 11 to 802 69 to 875 H3S     845/875
(96 %)
26 diff
(97.1 %id)
TI_57233510   .vg 11 to 494 106 to 610 G4R I5D A7S T8H P9A ...     533/847
(62 %)
40 diff
(95.3 %id)
TI_57171635   .vg 11 to 810 63 to 867 F2C     834/869
(95 %)
16 diff
(98.2 %id)
DA669500 esophagus .vg 11 to 408 59 to 457 S62F capped   456/456
(100 %)
2 diff
(99.6 %id)
DA846121 placenta .vg 11 to 429 26 to 447 E19G L20A Y21V E22* capped   446/446
(100 %)
3 diff
(99.4 %id)
DA940816 Spleen .vg 11 to 549 61 to 599 exact capped   598/598
(100 %)
1 diff
(99.9 %id)
DA952338 Spleen .vg 11 to 428 61 to 479 P9A I11H G12R A13S G15W ... capped   478/478
(100 %)
4 diff
(99.2 %id)
DA952792 Spleen .vg 11 to 531 56 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
DB000821 breast, tumor tissue .vg 11 to 515 26 to 530 exact capped   529/529
(100 %)
1 diff
(99.9 %id)
DB038275 testis .vg 11 to 417 61 to 467 exact capped   466/466
(100 %)
0 diff
(100 %id)
DB109670 thymus .vg 11 to 518 68 to 575 Y56C capped   574/574
(100 %)
1 diff
(99.9 %id)
DB112300 thymus .vg 11 to 529 68 to 586 exact capped   585/585
(100 %)
0 diff
(100 %id)
BQ637581 eye, retina .vh 11 to 537 24 to 550 exact tiling clone,   550/550
(100 %)
0 diff
(100 %id)
BP392322 pancreatic islet .vh 415 to 870 1 to 456   tiling clone, Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
DA106578 cerebellum .vi 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DA841712 placenta .vj 1 to 548 2 to 550 E11R E13R V14S R15K Q16T ... tiling clone, capped   549/549
(100 %)
4 diff
(99.3 %id)
DB281917 uterus .vk -11 to 542 2 to 557   tiling clone, capped   556/556
(100 %)
2 diff
(99.7 %id)
DA104040 cerebellum .vk 11 to 474 26 to 491   capped   490/490
(100 %)
3 diff
(99.4 %id)
DB138652 thymus .vk 11 to 485 61 to 537   tiling clone, capped   536/536
(100 %)
2 diff
(99.7 %id)
DB286636 uterus .vk 11 to 479 49 to 519   capped   518/522
(99 %)
3 diff
(99.5 %id)
CN276788 embryonic stem cells, DMSO-treated H9 cellline .vl -11 to 529 1 to 541 exact tiling clone,   541/541
(100 %)
4 diff
(99.3 %id)
BX384781   Gene VPS28, variant not shown         This clone was ignored    
BI458423 brain, hypothalamus Gene VPS28, variant not shown         This clone was ignored    
102 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg, .vh, .vi, .vj, .vk, .vl Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI