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Gene VPS13DandSNORA59ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
556 supporting clones for gene VPS13DandSNORA59A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_015378.2   VPS13DandSNORA59A.a 1 to 16326 1 to 16326 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 16326/16326
(100 %)
1 diff
(100.0 %id)
AJ608774   VPS13DandSNORA59A.a 12 to 14645 1 to 14634 S2783G tiling clone,   14634/14634
(100 %)
2 diff
(100.0 %id)
BX488817   VPS13DandSNORA59A.b 1 to 628 1 to 629   tiling clone,   629/629
(100 %)
5 diff
(99.3 %id)
NM_018156.2   VPS13DandSNORA59A.b 3 to 16253 1 to 16251 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 16251/16251
(100 %)
1 diff
(100.0 %id)
AJ608775   VPS13DandSNORA59A.b 14 to 14572 1 to 14559 S2783G tiling clone,   14559/14559
(100 %)
2 diff
(100.0 %id)
AL162331   VPS13DandSNORA59A.b 14 to 6954 1 to 6941       6941/6941
(100 %)
0 diff
(100 %id)
BF376139 testis_normal VPS13DandSNORA59A.b 333 to 452 1 to 120       120/120
(100 %)
1 diff
(99.2 %id)
BF885418 testis_normal VPS13DandSNORA59A.b 722 to 1095 375 to 2     Submitted on the opposite strand 374/377
(99 %)
1 diff
(99.8 %id)
BI059614 uterus_tumor VPS13DandSNORA59A.b 722 to 1080 389 to 29       361/391
(92 %)
6 diff
(98.5 %id)
BI060566 uterus_tumor VPS13DandSNORA59A.b 722 to 1083 411 to 54       358/412
(86 %)
4 diff
(99.1 %id)
BQ380554 uterus_tumor VPS13DandSNORA59A.b 722 to 1065 381 to 41       341/383
(89 %)
1 diff
(99.8 %id)
CV358197 uterus_tumor VPS13DandSNORA59A.b 722 to 1118 1 to 397       397/398
(99 %)
18 diff
(95.5 %id)
CV358181 uterus_tumor VPS13DandSNORA59A.b 730 to 1118 1 to 384       384/385
(99 %)
15 diff
(96.2 %id)
BF377336 testis_normal VPS13DandSNORA59A.b 732 to 1173 1 to 435       435/446
(97 %)
12 diff
(97.4 %id)
CV358175 uterus_tumor VPS13DandSNORA59A.b 734 to 1118 10 to 389       380/390
(97 %)
13 diff
(96.7 %id)
BF911498 uterus_tumor VPS13DandSNORA59A.b 735 to 1118 1 to 379       379/380
(99 %)
14 diff
(96.4 %id)
CV358186 uterus_tumor VPS13DandSNORA59A.b 735 to 1118 9 to 389       381/390
(97 %)
14 diff
(96.5 %id)
AW864674 stomach_normal VPS13DandSNORA59A.b 743 to 1254 9 to 519       511/522
(97 %)
14 diff
(97.4 %id)
BF363046 nervous_normal VPS13DandSNORA59A.b 753 to 866 114 to 1       114/136
(83 %)
8 diff
(94.2 %id)
AW864675 stomach_normal VPS13DandSNORA59A.b 754 to 1212 1 to 459       459/462
(99 %)
3 diff
(99.4 %id)
AW864597 stomach_normal VPS13DandSNORA59A.b 756 to 879 1 to 124       124/124
(100 %)
4 diff
(96.8 %id)
BI059690 uterus_tumor VPS13DandSNORA59A.b 756 to 1118 14 to 374       361/375
(96 %)
16 diff
(95.8 %id)
BI060504 uterus_tumor VPS13DandSNORA59A.b 801 to 1118 12 to 327       316/328
(96 %)
14 diff
(95.8 %id)
BI059685 uterus_tumor VPS13DandSNORA59A.b 804 to 1118 66 to 379       314/380
(82 %)
13 diff
(96.6 %id)
CV354746 colon VPS13DandSNORA59A.b 916 to 1118 14 to 216       203/217
(93 %)
18 diff
(91.8 %id)
BF893388 marrow VPS13DandSNORA59A.b 1393 to 1553 201 to 42     Submitted on the opposite strand 160/201
(79 %)
0 diff
(100 %id)
BF902703 marrow VPS13DandSNORA59A.b 1605 to 1943 1 to 339       338/339
(99 %)
23 diff
(93.3 %id)
BF334941 colon VPS13DandSNORA59A.b 1653 to 2061 22 to 429       408/434
(94 %)
8 diff
(98.2 %id)
BF362311 nervous_normal VPS13DandSNORA59A.b 2671 to 3127 1 to 460       460/460
(100 %)
17 diff
(96.4 %id)
BF851487 lung_normal VPS13DandSNORA59A.b 2952 to 3368 18 to 434       417/434
(96 %)
6 diff
(98.7 %id)
BF379807 uterus_tumor VPS13DandSNORA59A.b 3072 to 3341 273 to 4       270/273
(98 %)
0 diff
(100 %id)
CV352755 head_neck VPS13DandSNORA59A.b 3718 to 4318 619 to 12     Submitted on the opposite strand 608/692
(87 %)
0 diff
(100 %id)
BF354273 head_neck VPS13DandSNORA59A.b 4145 to 4310 169 to 1       169/169
(100 %)
5 diff
(97.1 %id)
BF355896 head_neck VPS13DandSNORA59A.b 4283 to 4596 16 to 329       314/331
(94 %)
11 diff
(96.7 %id)
BG994160 head_neck VPS13DandSNORA59A.b 4406 to 4869 465 to 3       463/465
(99 %)
1 diff
(99.8 %id)
BF336101 colon VPS13DandSNORA59A.b 4439 to 4747 327 to 20       311/327
(95 %)
6 diff
(98.2 %id)
BF336036 colon VPS13DandSNORA59A.b 4451 to 4769 13 to 330       318/337
(94 %)
8 diff
(97.7 %id)
BF336053 colon VPS13DandSNORA59A.b 4451 to 4769 12 to 330       319/337
(94 %)
12 diff
(96.5 %id)
BF336085 colon VPS13DandSNORA59A.b 4451 to 4769 326 to 8       319/341
(93 %)
5 diff
(98.6 %id)
BF336125 colon VPS13DandSNORA59A.b 4451 to 4769 30 to 347       318/354
(89 %)
8 diff
(97.8 %id)
BF336121 colon VPS13DandSNORA59A.b 4459 to 4769 8 to 317       310/324
(95 %)
10 diff
(97.0 %id)
BF365579 nervous_tumor VPS13DandSNORA59A.b 4461 to 4875 1 to 415       415/415
(100 %)
12 diff
(97.2 %id)
BG986971 head_neck VPS13DandSNORA59A.b 4509 to 5037 531 to 5       527/539
(97 %)
1 diff
(99.9 %id)
AW818635 stomach VPS13DandSNORA59A.b 4880 to 5163 292 to 9       284/292
(97 %)
0 diff
(100 %id)
BF376150 testis_normal VPS13DandSNORA59A.b 4888 to 5295 409 to 3       407/409
(99 %)
0 diff
(100 %id)
BI040406 nervous_tumor VPS13DandSNORA59A.b 5118 to 5672 555 to 1       555/555
(100 %)
1 diff
(99.9 %id)
BI040633 nervous_tumor VPS13DandSNORA59A.b 5418 to 5672 17 to 271       255/271
(94 %)
9 diff
(96.7 %id)
DA459053 tongue, tumor tissue VPS13DandSNORA59A.b 6257 to 6813 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BX641035 human fetal kidney VPS13DandSNORA59A.b 6422 to 14572 1 to 8150   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 8150/8150
(100 %)
14 diff
(99.9 %id)
AA099548 uterus VPS13DandSNORA59A.b 6562 to 6708 1 to 151   fully sequenced,   151/151
(100 %)
0 diff
(100 %id)
BX282193 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.b 6563 to 7052 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
AI378412 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.b 6569 to 7045 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
CD629011   VPS13DandSNORA59A.b 6581 to 7243 23 to 682       660/682
(96 %)
12 diff
(98.3 %id)
AA099549 uterus VPS13DandSNORA59A.b 6678 to 7045 376 to 1   fully sequenced,   376/376
(100 %)
8 diff
(97.9 %id)
CD629010   VPS13DandSNORA59A.b 6916 to 7383 473 to 3       471/473
(99 %)
3 diff
(99.4 %id)
BP357935 mammary gland VPS13DandSNORA59A.b 7116 to 7693 1 to 578       578/582
(99 %)
2 diff
(99.7 %id)
BQ311403 breast_normal VPS13DandSNORA59A.b 7300 to 7642 348 to 2       347/355
(97 %)
6 diff
(98.4 %id)
BE006932 breast_normal VPS13DandSNORA59A.b 7319 to 7527 7 to 217       211/217
(97 %)
6 diff
(97.3 %id)
BE006867 breast_normal VPS13DandSNORA59A.b 7396 to 7642 246 to 2     Submitted on the opposite strand 245/249
(98 %)
6 diff
(97.6 %id)
AL598064   VPS13DandSNORA59A.b 7439 to 7994 1 to 556       556/556
(100 %)
0 diff
(100 %id)
CD655090 Embryonic Stem cells VPS13DandSNORA59A.b 7685 to 8521 12 to 844       833/847
(98 %)
16 diff
(98.2 %id)
CF139616 CNCAP(3)T-225 cell line, Prostate VPS13DandSNORA59A.b 7904 to 8284 1 to 381       381/381
(100 %)
5 diff
(98.7 %id)
TI_154169937   VPS13DandSNORA59A.b 7911 to 8342 78 to 509       432/613
(70 %)
7 diff
(98.9 %id)
BP315561 mammary gland VPS13DandSNORA59A.b 7930 to 8510 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AW834223 testis VPS13DandSNORA59A.b 8335 to 8630 18 to 312       295/313
(94 %)
18 diff
(94.3 %id)
DB063428 testis VPS13DandSNORA59A.b 8868 to 9407 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
AK057675 trachea VPS13DandSNORA59A.b 8941 to 10975 1 to 2034   available from FLJ,   2034/2034
(100 %)
1 diff
(100.0 %id)
DB195386 trachea VPS13DandSNORA59A.b 8942 to 9424 2 to 483   capped   482/482
(100 %)
1 diff
(99.8 %id)
BG998241 head_neck VPS13DandSNORA59A.b 8949 to 9247 44 to 338       295/351
(84 %)
10 diff
(97.2 %id)
BC028115 Testis, embryonal carcinoma VPS13DandSNORA59A.b 9005 to 13585 11 to 4591   available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 4581/4581
(100 %)
1 diff
(100.0 %id)
BG257747 embryonal carcinoma, cell line, testis VPS13DandSNORA59A.b 9006 to 9748 1 to 751   available from MGC,   751/892
(84 %)
20 diff
(97.8 %id)
AL833079 human spinal cord VPS13DandSNORA59A.b 9300 to 14571 1 to 5272   available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 5272/5273
(99 %)
9 diff
(99.9 %id)
BE168484 head_neck VPS13DandSNORA59A.b 9548 to 9922 375 to 1     Submitted on the opposite strand 375/375
(100 %)
0 diff
(100 %id)
AA447020   VPS13DandSNORA59A.b 9583 to 10064 1 to 482       482/491
(98 %)
4 diff
(99.2 %id)
AL833320 human testis VPS13DandSNORA59A.b 9585 to 13275 1 to 3691   available from DKFZ, AAA   3691/4724
(78 %)
2 diff
(100.0 %id)
AL703898.
matches multiple genes
human skeletal muscle VPS13DandSNORA59A.b 9585 to 10143 1 to 559     also hits gene spoyslubu 559/560
(99 %)
1 diff
(99.9 %id)
DB097680 testis VPS13DandSNORA59A.b 9661 to 10259 2 to 601   capped   600/600
(100 %)
2 diff
(99.7 %id)
CN353764 embryonic stem cells, DMSO-treated H9 cellline VPS13DandSNORA59A.b 9761 to 10405 1 to 645       645/645
(100 %)
0 diff
(100 %id)
BI061932 uterus_tumor VPS13DandSNORA59A.b 9970 to 10465 15 to 510       496/510
(97 %)
11 diff
(97.9 %id)
BI063205 uterus_tumor VPS13DandSNORA59A.b 9977 to 10465 489 to 1       489/489
(100 %)
1 diff
(99.8 %id)
BQ695216 adipose VPS13DandSNORA59A.b 9982 to 10166 1 to 185       185/185
(100 %)
3 diff
(98.4 %id)
DB156791 thymus VPS13DandSNORA59A.b 9988 to 10540 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
CN353762 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells VPS13DandSNORA59A.b 10063 to 10639 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
AA446900   VPS13DandSNORA59A.b 10091 to 10503 487 to 76       412/487
(84 %)
1 diff
(99.8 %id)
AI377029   VPS13DandSNORA59A.b 10114 to 10503 465 to 76       390/465
(83 %)
0 diff
(100 %id)
BE718732 head_neck VPS13DandSNORA59A.b 10340 to 10763 423 to 1       423/423
(100 %)
5 diff
(98.9 %id)
BI050785 placenta_normal VPS13DandSNORA59A.b 10341 to 10512 1 to 170       170/170
(100 %)
8 diff
(95.3 %id)
AW504754 lymph VPS13DandSNORA59A.b 10347 to 10636 1 to 290       290/290
(100 %)
25 diff
(91.4 %id)
AW504816 lymph VPS13DandSNORA59A.b 10347 to 10875 1 to 529       529/529
(100 %)
6 diff
(98.9 %id)
BE718735 head_neck VPS13DandSNORA59A.b 10353 to 10768 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
TI_154161060   VPS13DandSNORA59A.b 10354 to 10876 72 to 597       526/727
(72 %)
55 diff
(92.5 %id)
TI_154161157   VPS13DandSNORA59A.b 10354 to 10993 80 to 716       637/691
(92 %)
16 diff
(97.7 %id)
DA346796 substantia nigra VPS13DandSNORA59A.b 10363 to 10901 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA326962 hippocampus VPS13DandSNORA59A.b 10366 to 11027 2 to 663   capped   662/662
(100 %)
0 diff
(100 %id)
BX643066   VPS13DandSNORA59A.b 10380 to 10788 1 to 409       409/409
(100 %)
1 diff
(99.8 %id)
BE718727 head_neck VPS13DandSNORA59A.b 10393 to 10850 1 to 458       458/458
(100 %)
4 diff
(99.2 %id)
DB314487 tongue, tumor tissue VPS13DandSNORA59A.b 10415 to 10975 561 to 1       561/561
(100 %)
0 diff
(100 %id)
DB348049 trachea VPS13DandSNORA59A.b 10436 to 10975 540 to 1       540/540
(100 %)
0 diff
(100 %id)
DB091186 testis VPS13DandSNORA59A.b 10494 to 11050 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BC051804 Testis, embryonal carcinoma VPS13DandSNORA59A.b 10509 to 16253 1 to 5747   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 5747/5747
(100 %)
2 diff
(100.0 %id)
BM478544 embryonal carcinoma, cell line, testis VPS13DandSNORA59A.b 10515 to 11301 7 to 799   available from MGC,   791/1093
(72 %)
14 diff
(98.8 %id)
DB156686 thymus VPS13DandSNORA59A.b 10541 to 11107 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BF355772 head_neck VPS13DandSNORA59A.b 10694 to 11062 376 to 1       376/378
(99 %)
20 diff
(94.8 %id)
BF355792 head_neck VPS13DandSNORA59A.b 10694 to 11062 376 to 1       376/378
(99 %)
20 diff
(94.8 %id)
BE933069 head_neck VPS13DandSNORA59A.b 10699 to 10976 281 to 5       277/281
(98 %)
1 diff
(99.7 %id)
DA491574 brain VPS13DandSNORA59A.b 10715 to 11258 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA236162 brain VPS13DandSNORA59A.b 10846 to 11436 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
CO249291 Chondrosarcoma Lung Metastasis cell lines, lung VPS13DandSNORA59A.b 10853 to 11371 37 to 553       517/733
(70 %)
14 diff
(98.1 %id)
BG418977 Kidney, renal cell adenocarcinoma VPS13DandSNORA59A.b 10894 to 11547 1 to 654       654/870
(75 %)
5 diff
(99.5 %id)
DB131755 thymus VPS13DandSNORA59A.b 10897 to 11428 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB140895 thymus VPS13DandSNORA59A.b 10897 to 11452 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
CN353765 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells VPS13DandSNORA59A.b 10924 to 11382 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
BM719840 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 10998 to 11476 1 to 479       479/479
(100 %)
0 diff
(100 %id)
DA758806   VPS13DandSNORA59A.b 11151 to 11722 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BF922657 nervous_tumor VPS13DandSNORA59A.b 11185 to 11418 236 to 2     Submitted on the opposite strand 235/238
(98 %)
6 diff
(97.5 %id)
DA325274 hippocampus VPS13DandSNORA59A.b 11238 to 11788 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA234865 brain VPS13DandSNORA59A.b 11250 to 11822 15 to 601   capped   587/600
(97 %)
7 diff
(98.9 %id)
BQ340578 nervous_normal VPS13DandSNORA59A.b 11338 to 11755 9 to 425       417/425
(98 %)
7 diff
(98.4 %id)
BQ340586 nervous_normal VPS13DandSNORA59A.b 11338 to 11941 18 to 620       516/620
(83 %)
22 diff
(96.5 %id)
BQ328039 kidney_tumor VPS13DandSNORA59A.b 11342 to 11712 21 to 391       371/391
(94 %)
7 diff
(98.3 %id)
BQ340580 nervous_normal VPS13DandSNORA59A.b 11348 to 11910 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
AL118592 amygdala VPS13DandSNORA59A.b 11349 to 12058 1 to 710       710/710
(100 %)
0 diff
(100 %id)
BQ340626 nervous_normal VPS13DandSNORA59A.b 11350 to 11701 1 to 357       357/384
(92 %)
9 diff
(97.7 %id)
DA491725 brain VPS13DandSNORA59A.b 11360 to 11937 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
BQ340623 nervous_normal VPS13DandSNORA59A.b 11365 to 11606 7 to 251       245/268
(91 %)
9 diff
(96.7 %id)
BQ340588 nervous_normal VPS13DandSNORA59A.b 11404 to 11995 605 to 4       602/605
(99 %)
26 diff
(95.8 %id)
DA298246 hippocampus VPS13DandSNORA59A.b 11477 to 12041 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
AW812008 stomach VPS13DandSNORA59A.b 11497 to 11926 1 to 429       429/433
(99 %)
8 diff
(98.2 %id)
DA334402 hippocampus VPS13DandSNORA59A.b 11526 to 12096 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA759797   VPS13DandSNORA59A.b 11529 to 12071 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BQ354277 head_neck VPS13DandSNORA59A.b 11566 to 11933 368 to 1       368/368
(100 %)
12 diff
(96.8 %id)
BG992593 head_neck VPS13DandSNORA59A.b 11583 to 12098 1 to 517       514/529
(97 %)
20 diff
(96.3 %id)
AK074350   VPS13DandSNORA59A.b 11593 to 14096 1 to 2505   available from FLJ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 2505/2508
(99 %)
9 diff
(99.7 %id)
CN372862 embryonic stem cells, DMSO-treated H9 cellline VPS13DandSNORA59A.b 11675 to 12397 1 to 723       723/723
(100 %)
0 diff
(100 %id)
AA295225 Pancreas VPS13DandSNORA59A.b 11714 to 12088 1 to 376       376/381
(98 %)
6 diff
(98.5 %id)
BQ340585 nervous_normal VPS13DandSNORA59A.b 11782 to 11995 224 to 16       209/224
(93 %)
3 diff
(98.7 %id)
BM353218 Pancreas, Purified pancreatic islet VPS13DandSNORA59A.b 11795 to 12428 20 to 653       634/662
(95 %)
8 diff
(98.8 %id)
BM353373 Pancreas, Purified pancreatic islet VPS13DandSNORA59A.b 11795 to 12436 20 to 661       642/662
(96 %)
8 diff
(98.8 %id)
CK825128 Pancreas, Purified pancreatic islet VPS13DandSNORA59A.b 11831 to 12392 1 to 562     Submitted on the opposite strand 562/562
(100 %)
1 diff
(99.9 %id)
BF741682 bocio_tumor VPS13DandSNORA59A.b 11833 to 12099 1 to 267       267/267
(100 %)
2 diff
(99.3 %id)
BE932317 head_neck VPS13DandSNORA59A.b 11836 to 12241 12 to 416       405/459
(88 %)
20 diff
(95.7 %id)
BI030729 marrow VPS13DandSNORA59A.b 11840 to 12231 1 to 392       392/392
(100 %)
1 diff
(99.8 %id)
DA744759   VPS13DandSNORA59A.b 11873 to 12401 2 to 531   capped   530/539
(98 %)
2 diff
(99.7 %id)
DA389210 thalamus VPS13DandSNORA59A.b 11902 to 12469 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA268847 caudate nucleus VPS13DandSNORA59A.b 11963 to 12538 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
W22925 eye, retina VPS13DandSNORA59A.b 12024 to 12536 10 to 520       511/529
(96 %)
15 diff
(97.2 %id)
DA236427 brain VPS13DandSNORA59A.b 12025 to 12607 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
CV808492 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass VPS13DandSNORA59A.b 12090 to 12860 1 to 778       778/883
(88 %)
11 diff
(98.8 %id)
BM906396 ovary (pool of 3) VPS13DandSNORA59A.b 12178 to 13026 18 to 873   AAA   856/1089
(78 %)
22 diff
(98.0 %id)
DA219776 brain VPS13DandSNORA59A.b 12192 to 12694 2 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
T05789   VPS13DandSNORA59A.b 12216 to 12610 8 to 412       405/415
(97 %)
12 diff
(97.2 %id)
DA312640 hippocampus VPS13DandSNORA59A.b 12224 to 12781 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
M78374   VPS13DandSNORA59A.b 12395 to 12731 1 to 338       338/338
(100 %)
1 diff
(99.8 %id)
CA394072 eye, RPE/choroid VPS13DandSNORA59A.b 12418 to 13037 1 to 620       620/620
(100 %)
2 diff
(99.7 %id)
CD708036 normal nasopharynx VPS13DandSNORA59A.b 12421 to 12619 14 to 213       200/213
(93 %)
6 diff
(97.2 %id)
BF845919 lung_normal VPS13DandSNORA59A.b 12482 to 12848 371 to 8     Submitted on the opposite strand 364/395
(92 %)
0 diff
(100 %id)
BQ328941 lung_normal VPS13DandSNORA59A.b 12482 to 12817 339 to 1       339/363
(93 %)
0 diff
(100 %id)
BG055214 Prostate VPS13DandSNORA59A.b 12536 to 12734 1 to 199     Submitted on the opposite strand 199/199
(100 %)
3 diff
(98.5 %id)
BE836272 prostate_normal VPS13DandSNORA59A.b 12632 to 13049 446 to 29       418/452
(92 %)
0 diff
(100 %id)
BE770123 prostate_tumor VPS13DandSNORA59A.b 12675 to 13052 397 to 17       381/403
(94 %)
4 diff
(99.1 %id)
AW607535 head_neck VPS13DandSNORA59A.b 12683 to 13142 460 to 1       460/460
(100 %)
16 diff
(96.6 %id)
CN302776 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 VPS13DandSNORA59A.b 12725 to 13474 1 to 753       753/753
(100 %)
8 diff
(99.0 %id)
FN174933 breast carcinoma VPS13DandSNORA59A.b 12729 to 12833 104 to 1     Submitted on the opposite strand 104/108
(96 %)
1 diff
(99.1 %id)
TI_45209133   VPS13DandSNORA59A.b 12734 to 13498 79 to 841       763/1032
(73 %)
31 diff
(97.0 %id)
AI743430 pooled VPS13DandSNORA59A.b 12738 to 13384 647 to 1       647/647
(100 %)
11 diff
(98.3 %id)
CB044598 colon, juvenile granulosa tumor VPS13DandSNORA59A.b 12738 to 13393 5 to 660       656/660
(99 %)
5 diff
(99.3 %id)
BG714328 brain, hypothalamus VPS13DandSNORA59A.b 12739 to 13405 1 to 665       665/665
(100 %)
6 diff
(99.1 %id)
BI596705 brain, hypothalamus VPS13DandSNORA59A.b 12739 to 13498 1 to 758       758/949
(79 %)
30 diff
(96.9 %id)
DB488836 hypothalamus VPS13DandSNORA59A.b 12743 to 13192 1 to 443       446/443
(100 %)
17 diff
(96.2 %id)
DB492512 hypothalamus VPS13DandSNORA59A.b 12744 to 13105 1 to 362       362/364
(99 %)
15 diff
(95.9 %id)
DB497919 hypothalamus VPS13DandSNORA59A.b 12744 to 13240 1 to 497       497/497
(100 %)
0 diff
(100 %id)
DB502970 hypothalamus VPS13DandSNORA59A.b 12744 to 13220 1 to 477       477/477
(100 %)
2 diff
(99.6 %id)
DB505785 hypothalamus VPS13DandSNORA59A.b 12744 to 13249 1 to 506       506/506
(100 %)
1 diff
(99.9 %id)
DA231186 brain VPS13DandSNORA59A.b 12794 to 13343 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BQ009881 Chondrosarcoma, Left Pubic Bone VPS13DandSNORA59A.b 12817 to 13578 779 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 761/761
(100 %)
4 diff
(99.5 %id)
DB277014 uterus VPS13DandSNORA59A.b 12835 to 13304 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
CD368667 Alveolar Macrophage, lung VPS13DandSNORA59A.b 12892 to 13578 705 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 687/687
(100 %)
5 diff
(99.3 %id)
TI_149296365   VPS13DandSNORA59A.b 12901 to 13645 803 to 78   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 726/893
(81 %)
19 diff
(97.9 %id)
AI149773   VPS13DandSNORA59A.b 12928 to 13392 465 to 1       465/465
(100 %)
1 diff
(99.8 %id)
BF111962 pooled VPS13DandSNORA59A.b 12948 to 13644 697 to 1       697/697
(100 %)
2 diff
(99.8 %id)
TI_151719935   VPS13DandSNORA59A.b 12983 to 13641 737 to 77       661/1327
(49 %)
9 diff
(99.4 %id)
BU684330 lung, Primary Lung Cystic Fibrosis EpithelialCells VPS13DandSNORA59A.b 13009 to 13645 649 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 631/631
(100 %)
6 diff
(99.1 %id)
BQ029467 lung, Metastatic Chondrosarcoma VPS13DandSNORA59A.b 13052 to 13581 545 to 16   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 530/530
(100 %)
0 diff
(100 %id)
BG056354 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification VPS13DandSNORA59A.b 13098 to 13579 482 to 1       482/577
(83 %)
11 diff
(98.1 %id)
DA415733 thalamus VPS13DandSNORA59A.b 13109 to 13666 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AI090274 uterus VPS13DandSNORA59A.b 13145 to 13578 434 to 1       434/434
(100 %)
1 diff
(99.8 %id)
AI361489 brain, glioblastoma (pooled) VPS13DandSNORA59A.b 13155 to 13541 387 to 1       387/387
(100 %)
0 diff
(100 %id)
AA040909 uterus VPS13DandSNORA59A.b 13166 to 13645 482 to 1       482/482
(100 %)
3 diff
(99.4 %id)
AI989549 pooled germ cell tumors VPS13DandSNORA59A.b 13173 to 13645 495 to 25   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 471/471
(100 %)
8 diff
(98.4 %id)
AA310563   VPS13DandSNORA59A.b 13175 to 13472 1 to 298       298/298
(100 %)
0 diff
(100 %id)
AW958273   VPS13DandSNORA59A.b 13176 to 13849 1 to 674       674/675
(99 %)
13 diff
(98.1 %id)
AF052104 brain VPS13DandSNORA59A.b 13178 to 14572 1 to 1395   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 1395/1395
(100 %)
1 diff
(100.0 %id)
F13408 brain, total brain VPS13DandSNORA59A.b 13179 to 13508 1 to 330       330/330
(100 %)
0 diff
(100 %id)
AI204426   VPS13DandSNORA59A.b 13179 to 13392 214 to 1       214/214
(100 %)
1 diff
(99.6 %id)
AI754796 bone marrow stroma VPS13DandSNORA59A.b 13187 to 13645 477 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 459/459
(100 %)
0 diff
(100 %id)
AI000898 breast VPS13DandSNORA59A.b 13193 to 13645 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
AW044450 Kidney VPS13DandSNORA59A.b 13209 to 13645 437 to 1       437/437
(100 %)
1 diff
(99.8 %id)
AI285397 esophagus, squamous cell carcinoma VPS13DandSNORA59A.b 13215 to 13580 366 to 1       366/366
(100 %)
0 diff
(100 %id)
AW403436 lymph VPS13DandSNORA59A.b 13237 to 13600 8 to 371     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 364/371
(98 %)
6 diff
(98.4 %id)
TI_154140102   VPS13DandSNORA59A.b 13237 to 13846 86 to 693       608/609
(99 %)
15 diff
(97.6 %id)
AA658416   VPS13DandSNORA59A.b 13243 to 13578 365 to 30   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 336/336
(100 %)
1 diff
(99.8 %id)
AI800010 Prostate VPS13DandSNORA59A.b 13280 to 13645 391 to 26   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 366/368
(99 %)
4 diff
(99.0 %id)
AI628038 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus VPS13DandSNORA59A.b 13282 to 13645 387 to 24   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 364/364
(100 %)
0 diff
(100 %id)
N48042 melanocyte VPS13DandSNORA59A.b 13285 to 13495 1 to 211       211/211
(100 %)
0 diff
(100 %id)
AI371489 brain, glioblastoma (pooled) VPS13DandSNORA59A.b 13288 to 13541 254 to 1       254/254
(100 %)
0 diff
(100 %id)
T78828 whole brain VPS13DandSNORA59A.b 13296 to 13629 1 to 342       342/344
(99 %)
11 diff
(96.9 %id)
BG982243 colon_normal VPS13DandSNORA59A.b 13337 to 13737 400 to 1       400/400
(100 %)
3 diff
(99.3 %id)
BE171979 head_neck VPS13DandSNORA59A.b 13351 to 13606 14 to 269       256/272
(94 %)
4 diff
(98.6 %id)
BU176282 eye, retinoblastoma VPS13DandSNORA59A.b 13370 to 14260 1 to 892       892/893
(99 %)
10 diff
(98.9 %id)
T04873   VPS13DandSNORA59A.b 13382 to 13699 319 to 1       319/319
(100 %)
2 diff
(99.4 %id)
AW235832 Kidney VPS13DandSNORA59A.b 13409 to 13635 227 to 1       227/227
(100 %)
0 diff
(100 %id)
AA665233 alveolar rhabdomyosarcoma VPS13DandSNORA59A.b 13411 to 13580 1 to 169       169/172
(98 %)
5 diff
(97.1 %id)
BG940022 blood VPS13DandSNORA59A.b 13436 to 13737 1 to 302       302/302
(100 %)
0 diff
(100 %id)
EB386039 eye, optic nerve VPS13DandSNORA59A.b 13439 to 13926 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
DA343513 substantia nigra VPS13DandSNORA59A.b 13483 to 14066 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
FN062384 breast carcinoma VPS13DandSNORA59A.b 13525 to 13575 1 to 51       51/55
(92 %)
1 diff
(98.2 %id)
AW591407 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors VPS13DandSNORA59A.b 13562 to 13633 78 to 7       72/78
(92 %)
0 diff
(100 %id)
AW264402 brain, three pooled meningiomas VPS13DandSNORA59A.b 13576 to 14099 525 to 2       524/525
(99 %)
0 diff
(100 %id)
BE939287 testis_normal VPS13DandSNORA59A.b 13583 to 14007 7 to 431       425/431
(98 %)
6 diff
(98.7 %id)
N77769 multiple sclerosis lesions VPS13DandSNORA59A.b 13612 to 13997 1 to 387       387/387
(100 %)
5 diff
(98.8 %id)
BG339345 leiomyosarcoma cell line, uterus VPS13DandSNORA59A.b 13629 to 14417 1 to 780   AAA   780/889
(87 %)
17 diff
(98.1 %id)
BG340388 leiomyosarcoma cell line, uterus VPS13DandSNORA59A.b 13629 to 14443 1 to 802       802/907
(88 %)
33 diff
(96.4 %id)
AI860485 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors VPS13DandSNORA59A.b 13630 to 14102 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
AI394626 B-cell, chronic lymphotic leukemia VPS13DandSNORA59A.b 13631 to 14105 475 to 1       475/475
(100 %)
0 diff
(100 %id)
AI421190 brain, glioblastoma (pooled) VPS13DandSNORA59A.b 13658 to 14106 449 to 1       449/449
(100 %)
0 diff
(100 %id)
DA054617 cerebellum VPS13DandSNORA59A.b 13660 to 14211 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
N99398 multiple sclerosis lesions VPS13DandSNORA59A.b 13671 to 13834 1 to 164       164/164
(100 %)
3 diff
(98.2 %id)
N55117 multiple sclerosis lesions VPS13DandSNORA59A.b 13725 to 14177 1 to 456       456/458
(99 %)
8 diff
(98.3 %id)
BM930146 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 13726 to 14240 1 to 515   fully sequenced,   515/515
(100 %)
0 diff
(100 %id)
AA765992 germinal center B cell VPS13DandSNORA59A.b 13734 to 14115 382 to 1       382/382
(100 %)
0 diff
(100 %id)
TI_159714942   VPS13DandSNORA59A.b 13759 to 14572 895 to 96   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 800/980
(81 %)
13 diff
(98.7 %id)
CB118105 Liver VPS13DandSNORA59A.b 13764 to 13977 1 to 214       214/214
(100 %)
2 diff
(99.1 %id)
BG576387 breast, mammary adenocarcinoma, cell line VPS13DandSNORA59A.b 13772 to 14511 22 to 765       744/1140
(65 %)
36 diff
(96.9 %id)
BF899137 marrow VPS13DandSNORA59A.b 13787 to 13989 10 to 212       203/212
(95 %)
9 diff
(95.8 %id)
BF842700 head_neck VPS13DandSNORA59A.b 13799 to 14006 209 to 2     Submitted on the opposite strand 208/209
(99 %)
7 diff
(96.7 %id)
TI_45133403   VPS13DandSNORA59A.b 13813 to 14447 55 to 691       637/790
(80 %)
29 diff
(96.4 %id)
BI457163 epithelioid carcinoma cell line, Pancreas VPS13DandSNORA59A.b 13817 to 14447 7 to 639       633/792
(79 %)
26 diff
(96.8 %id)
TI_149300307   VPS13DandSNORA59A.b 13819 to 14572 827 to 81   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 747/933
(80 %)
10 diff
(99.0 %id)
BE176205 head_neck VPS13DandSNORA59A.b 13828 to 13997 177 to 10     Submitted on the opposite strand 168/177
(94 %)
0 diff
(100 %id)
TI_227713919   VPS13DandSNORA59A.b 13828 to 14572 823 to 86   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 738/930
(79 %)
10 diff
(99.0 %id)
TI_149298586   VPS13DandSNORA59A.b 13840 to 14574 802 to 85   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 718/770
(93 %)
20 diff
(97.5 %id)
TI_154132168   VPS13DandSNORA59A.b 13840 to 14572 847 to 113   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 735/736
(99 %)
13 diff
(98.3 %id)
BF800164 colon_ins VPS13DandSNORA59A.b 13847 to 14324 7 to 485       479/485
(98 %)
6 diff
(98.8 %id)
CA310426 cell lines, Chondrosarcoma VPS13DandSNORA59A.b 13869 to 14572 720 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 702/702
(100 %)
2 diff
(99.8 %id)
CD364663 Alveolar Macrophage, lung VPS13DandSNORA59A.b 13869 to 14572 720 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 702/702
(100 %)
2 diff
(99.8 %id)
CB321851 Human Lung Epithelial cells, lung VPS13DandSNORA59A.b 13876 to 14572 715 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 697/701
(99 %)
0 diff
(100 %id)
BQ447865 Knee, Osteoarthritic Cartilage VPS13DandSNORA59A.b 13876 to 14572 711 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 693/697
(99 %)
6 diff
(99.2 %id)
CA426895 cell lines, Chondrosarcoma VPS13DandSNORA59A.b 13880 to 14572 709 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 691/698
(98 %)
2 diff
(99.8 %id)
BM976397 lung, Primary Lung Cystic Fibrosis EpithelialCells VPS13DandSNORA59A.b 13897 to 14572 694 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 676/676
(100 %)
3 diff
(99.6 %id)
CA428010 Bone, Subchondral Bone VPS13DandSNORA59A.b 13898 to 14572 693 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 675/675
(100 %)
7 diff
(99.0 %id)
BQ005605 Chondrosarcoma, Left Pelvis VPS13DandSNORA59A.b 13928 to 14572 661 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 643/643
(100 %)
2 diff
(99.7 %id)
AA524553 colon VPS13DandSNORA59A.b 13952 to 14572 611 to 1       611/640
(95 %)
27 diff
(95.8 %id)
BU618181 Cell Line, Chondrosarcoma VPS13DandSNORA59A.b 13957 to 14572 633 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 615/624
(98 %)
1 diff
(99.9 %id)
R72500 breast VPS13DandSNORA59A.b 13972 to 14399 1 to 441       441/446
(98 %)
22 diff
(95.1 %id)
AA135712 uterus VPS13DandSNORA59A.b 13986 to 14568 1 to 580   fully sequenced,   580/580
(100 %)
8 diff
(98.7 %id)
BM998258 lung, Metastatic Chondrosarcoma VPS13DandSNORA59A.b 14011 to 14572 580 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 562/562
(100 %)
1 diff
(99.9 %id)
AW574767 lymph VPS13DandSNORA59A.b 14017 to 14572 573 to 18   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 556/556
(100 %)
0 diff
(100 %id)
TI_149276725   VPS13DandSNORA59A.b 14023 to 14572 630 to 83   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 548/728
(75 %)
2 diff
(99.8 %id)
BU677380 lung, Primary Lung Epithelial Cells VPS13DandSNORA59A.b 14023 to 14572 566 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 548/566
(96 %)
2 diff
(99.7 %id)
R34492 placenta VPS13DandSNORA59A.b 14042 to 14331 1 to 303       303/318
(95 %)
18 diff
(94.4 %id)
AW138853   VPS13DandSNORA59A.b 14059 to 14572 531 to 18   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 514/514
(100 %)
0 diff
(100 %id)
AA788655 parathyroid gland, parathyroid tumor VPS13DandSNORA59A.b 14075 to 14492 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AW117200 pooled VPS13DandSNORA59A.b 14075 to 14572 498 to 1       498/498
(100 %)
0 diff
(100 %id)
AI684896 pooled VPS13DandSNORA59A.b 14077 to 14573 499 to 3       497/499
(99 %)
0 diff
(100 %id)
AW339989 pooled VPS13DandSNORA59A.b 14078 to 14573 497 to 2       496/497
(99 %)
0 diff
(100 %id)
CB144345 brain VPS13DandSNORA59A.b 14091 to 14630 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
DA818175   VPS13DandSNORA59A.b 14096 to 14658 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
TI_151731506   VPS13DandSNORA59A.b 14104 to 14572 551 to 83   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 469/988
(47 %)
0 diff
(100 %id)
AI672796 colon, colonic mucosa from 3 patients with Crohn'sdisease VPS13DandSNORA59A.b 14105 to 14573 469 to 1       469/469
(100 %)
2 diff
(99.6 %id)
BQ189237 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14108 to 14572 1 to 466   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 466/466
(100 %)
2 diff
(99.6 %id)
AW129957 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors VPS13DandSNORA59A.b 14115 to 14573 459 to 1       459/459
(100 %)
0 diff
(100 %id)
AW081734 pooled VPS13DandSNORA59A.b 14121 to 14572 453 to 1       453/453
(100 %)
6 diff
(98.7 %id)
AI693729 pooled VPS13DandSNORA59A.b 14124 to 14576 454 to 2       453/454
(99 %)
0 diff
(100 %id)
AI857456 anaplastic oligodendroglioma, brain VPS13DandSNORA59A.b 14128 to 14344 307 to 90   AAA   218/291
(74 %)
0 diff
(100 %id)
TI_151730712   VPS13DandSNORA59A.b 14135 to 14572 520 to 83   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 438/970
(45 %)
3 diff
(99.7 %id)
AW512733 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus VPS13DandSNORA59A.b 14136 to 14572 448 to 11   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 438/438
(100 %)
3 diff
(99.4 %id)
N35410 melanocyte VPS13DandSNORA59A.b 14139 to 14574 435 to 1       435/436
(99 %)
4 diff
(99.1 %id)
BQ186475 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14141 to 14572 1 to 433   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 433/433
(100 %)
1 diff
(99.8 %id)
CN302777 embryonic stem cells, DMSO-treated H9 cellline VPS13DandSNORA59A.b 14153 to 14586 1 to 434       434/434
(100 %)
6 diff
(98.7 %id)
N62863 multiple sclerosis lesions VPS13DandSNORA59A.b 14155 to 14572 420 to 1       420/420
(100 %)
3 diff
(99.3 %id)
BM717749 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14160 to 14572 1 to 413   fully sequenced,   413/413
(100 %)
1 diff
(99.8 %id)
AI091868 heart VPS13DandSNORA59A.b 14169 to 14572 404 to 1       404/404
(100 %)
3 diff
(99.3 %id)
AW205364   VPS13DandSNORA59A.b 14173 to 14572 416 to 18   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 399/399
(100 %)
1 diff
(99.8 %id)
AA844145 parathyroid gland, parathyroid tumor VPS13DandSNORA59A.b 14176 to 14576 403 to 3       401/403
(99 %)
0 diff
(100 %id)
AW302517 brain, three pooled meningiomas VPS13DandSNORA59A.b 14187 to 14576 392 to 3       390/392
(99 %)
0 diff
(100 %id)
AA156931 uterus VPS13DandSNORA59A.b 14188 to 14572 379 to 1   fully sequenced,   379/379
(100 %)
3 diff
(99.3 %id)
BM839087 Ascites, stomach VPS13DandSNORA59A.b 14189 to 14637 1 to 449       449/449
(100 %)
0 diff
(100 %id)
AI817849 colon, colon tumor, RER+ VPS13DandSNORA59A.b 14200 to 14573 375 to 2       374/375
(99 %)
0 diff
(100 %id)
BM684768 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14210 to 14580 380 to 11   fully sequenced,   370/380
(97 %)
5 diff
(98.7 %id)
DB265761 uterus VPS13DandSNORA59A.b 14213 to 14784 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
N73777 multiple sclerosis lesions VPS13DandSNORA59A.b 14245 to 14572 329 to 1       329/335
(98 %)
4 diff
(98.9 %id)
CU445549 epidermis VPS13DandSNORA59A.b 14249 to 14577 9 to 337       329/387
(85 %)
4 diff
(99.0 %id)
AA983941 pooled VPS13DandSNORA59A.b 14256 to 14573 320 to 3       318/320
(99 %)
0 diff
(100 %id)
AI024148   VPS13DandSNORA59A.b 14273 to 14576 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
BG248348 adenocarcinoma cell line, colon VPS13DandSNORA59A.b 14277 to 14892 1 to 620       620/875
(70 %)
14 diff
(98.4 %id)
AI219780 pooled VPS13DandSNORA59A.b 14279 to 14573 295 to 1       295/299
(98 %)
1 diff
(99.7 %id)
Z33435   VPS13DandSNORA59A.b 14283 to 14573 1 to 291       291/293
(99 %)
1 diff
(99.7 %id)
AW440724 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood VPS13DandSNORA59A.b 14290 to 14572 282 to 1       282/282
(100 %)
1 diff
(99.7 %id)
BE293618 adenocarcinoma cell line, colon VPS13DandSNORA59A.b 14298 to 14826 1 to 530       530/530
(100 %)
4 diff
(99.3 %id)
BE305119 adenocarcinoma cell line, colon VPS13DandSNORA59A.b 14298 to 14800 1 to 506       506/694
(72 %)
8 diff
(98.9 %id)
BE250024 adenocarcinoma cell line, colon VPS13DandSNORA59A.b 14300 to 14929 1 to 632       632/964
(65 %)
18 diff
(98.2 %id)
BE249965 adenocarcinoma cell line, colon VPS13DandSNORA59A.b 14300 to 15166 1 to 884       884/914
(96 %)
41 diff
(95.6 %id)
F10993 brain, total brain VPS13DandSNORA59A.b 14311 to 14572 262 to 1       262/262
(100 %)
0 diff
(100 %id)
AW899803 nervous_normal VPS13DandSNORA59A.b 14312 to 14488 19 to 191       173/191
(90 %)
6 diff
(96.9 %id)
CX164595 human embryonic stem cells differentiated toan early endodermal cell type VPS13DandSNORA59A.b 14320 to 15072 1 to 755       755/755
(100 %)
2 diff
(99.8 %id)
CB152056 brain VPS13DandSNORA59A.b 14351 to 14956 1 to 608       608/608
(100 %)
3 diff
(99.6 %id)
DA253462 caudate nucleus VPS13DandSNORA59A.b 14367 to 14942 2 to 581   capped   580/580
(100 %)
4 diff
(99.4 %id)
Z38685 brain, total brain VPS13DandSNORA59A.b 14372 to 14572 201 to 1       201/201
(100 %)
1 diff
(99.6 %id)
BF757092 colon VPS13DandSNORA59A.b 14427 to 14542 6 to 122       117/123
(95 %)
8 diff
(93.5 %id)
AI290874 carcinoid, lung VPS13DandSNORA59A.b 14448 to 14868 1 to 421     Submitted on the opposite strand 421/421
(100 %)
0 diff
(100 %id)
CB112199 Liver VPS13DandSNORA59A.b 14466 to 14966 1 to 503       503/503
(100 %)
2 diff
(99.7 %id)
BM674942 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14497 to 14580 95 to 11   fully sequenced,   85/95
(89 %)
5 diff
(94.8 %id)
CK300996 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14497 to 14580 94 to 11   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 84/94
(89 %)
5 diff
(94.7 %id)
CK299402 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid VPS13DandSNORA59A.b 14497 to 14580 94 to 11   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 84/94
(89 %)
5 diff
(94.7 %id)
DB727992 hypothalamus VPS13DandSNORA59A.b 14518 to 15239 1 to 728       728/729
(99 %)
10 diff
(98.7 %id)
DR422514 eye, Pterygium VPS13DandSNORA59A.b 14526 to 15134 1 to 611       611/611
(100 %)
2 diff
(99.7 %id)
CB306891 Human Lung Epithelial cells, lung VPS13DandSNORA59A.b 14548 to 14871 14 to 336   tiling clone, Submitted on the opposite strand 323/345
(93 %)
0 diff
(100 %id)
F07646 brain, total brain VPS13DandSNORA59A.b 14590 to 14795 1 to 208       208/208
(100 %)
2 diff
(99.1 %id)
F03896 brain, total brain VPS13DandSNORA59A.b 15944 to 16253 310 to 1       310/310
(100 %)
0 diff
(100 %id)
AB007922 brain VPS13DandSNORA59A.c 1 to 10969 1 to 10969 exact tiling clone, available from KIAA,   10969/10969
(100 %)
2 diff
(100.0 %id)
AK125118 tongue, tumor tissue VPS13DandSNORA59A.d 1 to 4909 2 to 4910 exact tiling clone, available from FLJ,   4910/4910
(100 %)
1 diff
(100.0 %id)
R10290 liver and spleen VPS13DandSNORA59A.d 2316 to 2700 1 to 398   fully sequenced,   398/398
(100 %)
16 diff
(96.0 %id)
R10291 liver and spleen VPS13DandSNORA59A.d 2681 to 3067 389 to 1   fully sequenced,   389/389
(100 %)
2 diff
(99.5 %id)
CB045261 colon, juvenile granulosa tumor VPS13DandSNORA59A.d 4605 to 5115 5 to 515   tiling clone, Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 511/515
(99 %)
5 diff
(99.1 %id)
CB045260 colon, juvenile granulosa tumor VPS13DandSNORA59A.d 5874 to 6380 527 to 21   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 507/507
(100 %)
0 diff
(100 %id)
BF205658 muscle, rhabdomyosarcoma VPS13DandSNORA59A.e 1 to 670 1 to 673   tiling clone, available from MGC,   673/947
(71 %)
13 diff
(98.7 %id)
BC025329 Muscle, rhabdomyosarcoma VPS13DandSNORA59A.e 2 to 3064 1 to 3063 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 3063/3063
(100 %)
0 diff
(100 %id)
AK001481   VPS13DandSNORA59A.f 1 to 3989 2 to 3989 D320G S521G tiling clone, available from FLJ,   3989/3989
(100 %)
9 diff
(99.8 %id)
AU129407   VPS13DandSNORA59A.f 1 to 664 2 to 664   capped   663/663
(100 %)
4 diff
(99.4 %id)
AA080880   VPS13DandSNORA59A.f 2672 to 2875 1 to 206       206/209
(98 %)
3 diff
(98.6 %id)
AU151531   VPS13DandSNORA59A.f 3429 to 3989 569 to 1       569/571
(99 %)
23 diff
(96.0 %id)
AA610364 thyroid VPS13DandSNORA59A.f 3656 to 3999 344 to 1   tiling clone,   344/348
(98 %)
1 diff
(99.8 %id)
DB128626 thymus VPS13DandSNORA59A.g 1 to 479 2 to 480   tiling clone, to resequence, capped   479/479
(100 %)
2 diff
(99.6 %id)
BX953943   VPS13DandSNORA59A.g 35 to 513 1 to 479   tiling clone,   479/479
(100 %)
0 diff
(100 %id)
DB344430 thymus VPS13DandSNORA59A.g 1288 to 1829 548 to 1   tiling clone, to resequence,   548/548
(100 %)
6 diff
(99.0 %id)
AK295882 hippocampus VPS13DandSNORA59A.h 1 to 1245 10 to 1254 G186E tiling clone,   1245/1245
(100 %)
1 diff
(100.0 %id)
DC336170 hippocampus VPS13DandSNORA59A.h 1 to 567 10 to 576       567/567
(100 %)
1 diff
(99.9 %id)
BQ430009 melanotic melanoma, skin VPS13DandSNORA59A.h 5 to 561 1 to 564       564/1009
(55 %)
10 diff
(99.1 %id)
DC347264 tongue, tumor tissue VPS13DandSNORA59A.h 7 to 592 1 to 586   tiling clone,   586/586
(100 %)
0 diff
(100 %id)
DC423699 uterus VPS13DandSNORA59A.h 16 to 592 1 to 577       577/577
(100 %)
0 diff
(100 %id)
BQ005959 Chondrosarcoma, Left Pelvis VPS13DandSNORA59A.i 1 to 739 752 to 15 A6P G25A S26L S27R V28W ... tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 738/738
(100 %)
6 diff
(99.2 %id)
BQ380551 uterus_tumor VPS13DandSNORA59A.j 1 to 419 439 to 26   tiling clone,   414/441
(93 %)
3 diff
(99.4 %id)
AW938373 denis_drash VPS13DandSNORA59A.j 100 to 585 497 to 12   tiling clone, Submitted on the opposite strand 486/497
(97 %)
1 diff
(99.8 %id)
AK304850 uterus VPS13DandSNORA59A.k 1 to 1503 3 to 1505 Q24R S93R tiling clone,   1505/1505
(100 %)
4 diff
(99.8 %id)
DC423696 uterus VPS13DandSNORA59A.k 1 to 575 3 to 578       578/578
(100 %)
4 diff
(99.4 %id)
DA989881 synovial membrane tissue from rheumatioidarthritis VPS13DandSNORA59A.l 1 to 525 2 to 526 exact tiling clone, capped   525/525
(100 %)
0 diff
(100 %id)
DB292243 uterus VPS13DandSNORA59A.m 1 to 587 2 to 588 exact tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
CD704457 normal nasopharynx VPS13DandSNORA59A.n 1 to 567 23 to 589 exact tiling clone,   567/589
(96 %)
6 diff
(99.0 %id)
DB081524 testis VPS13DandSNORA59A.o 1 to 574 2 to 576 L2X tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
DB092077 testis VPS13DandSNORA59A.p 1 to 545 2 to 546 G28R tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
CA941136 Pancreas, Purified pancreatic islet VPS13DandSNORA59A.q 1 to 461 1 to 461   tiling clone,   461/461
(100 %)
0 diff
(100 %id)
CA866165 Pancreas, Purified pancreatic islet VPS13DandSNORA59A.q 1574 to 2100 527 to 1   tiling clone,   527/527
(100 %)
0 diff
(100 %id)
BG005909 placenta_normal VPS13DandSNORA59A.r 1 to 462 24 to 483 R3A Q4S Q5K K6R E8V ... tiling clone,   462/483
(95 %)
6 diff
(98.8 %id)
DB248529 uterus VPS13DandSNORA59A.s 1 to 563 2 to 565 exact tiling clone, capped   564/564
(100 %)
5 diff
(99.2 %id)
DA875918 Prostate VPS13DandSNORA59A.s 5 to 563 2 to 560 exact capped   559/559
(100 %)
0 diff
(100 %id)
AK026719 Human lung VPS13DandSNORA59A.s 23 to 2173 1 to 2154 D19N I20R L21H G22F L23R ... tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 2150/2157
(99 %)
9 diff
(99.6 %id)
DA460478 tongue, tumor tissue VPS13DandSNORA59A.s 24 to 584 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
AA724965 parathyroid gland, parathyroid tumor VPS13DandSNORA59A.t 1 to 479 485 to 7 exact tiling clone,   479/485
(98 %)
0 diff
(100 %id)
DR005470 Prostate VPS13DandSNORA59A.u 1 to 582 1 to 583 W37V S38V L39X Q40A tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DB052579 testis VPS13DandSNORA59A.va 1 to 572 2 to 573 exact tiling clone, to resequence, capped   572/572
(100 %)
1 diff
(99.9 %id)
BF724734 eye, Iris VPS13DandSNORA59A.va 455 to 1028 1 to 574   tiling clone,   574/574
(100 %)
1 diff
(99.9 %id)
T52154 fetal spleen, Spleen VPS13DandSNORA59A.va 1130 to 1459 336 to 1   tiling clone,   336/455
(73 %)
0 diff
(100 %id)
T52230 fetal spleen, Spleen VPS13DandSNORA59A.va 1131 to 1410 1 to 287   tiling clone,   287/354
(81 %)
9 diff
(97.5 %id)
AF147323   VPS13DandSNORA59A.va 1149 to 1461 1 to 313       313/313
(100 %)
0 diff
(100 %id)
BF724733 eye, Iris VPS13DandSNORA59A.va 1322 to 1986 681 to 17   tiling clone, AAA   665/665
(100 %)
1 diff
(99.9 %id)
DB338674 testis VPS13DandSNORA59A.va 2680 to 3210 534 to 1   tiling clone, to resequence,   534/534
(100 %)
3 diff
(99.5 %id)
AA610266 thyroid VPS13DandSNORA59A.vb-u 1 to 302 348 to 48   tiling clone,   301/348
(86 %)
0 diff
(100 %id)
BQ710765 Spleen VPS13DandSNORA59A.vb-u 81 to 823 1 to 748   tiling clone,   748/941
(79 %)
13 diff
(98.7 %id)
CR976469 T-Lymphocytes VPS13DandSNORA59A.vb-u 337 to 983 1 to 651       651/651
(100 %)
4 diff
(99.4 %id)
CA392561 eye, RPE/choroid VPS13DandSNORA59A.vb-u 564 to 1149 1 to 586       586/586
(100 %)
0 diff
(100 %id)
CA392562 eye, RPE/choroid VPS13DandSNORA59A.vb-u 564 to 1149 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DA313897 hippocampus VPS13DandSNORA59A.vb-u 648 to 1196 2 to 547   capped   546/546
(100 %)
4 diff
(99.3 %id)
AW193512 serous papillary carcinoma, high grade, 2pooled tumors, uterus VPS13DandSNORA59A.vb-u 667 to 1157 491 to 1   tiling clone,   491/491
(100 %)
0 diff
(100 %id)
AI521901 Kidney VPS13DandSNORA59A.vb-u 734 to 1154 421 to 1       421/421
(100 %)
0 diff
(100 %id)
AK095438   VPS13DandSNORA59A.vb-u 902 to 2969 1 to 2069 exact tiling clone, available from FLJ,   2069/2069
(100 %)
4 diff
(99.9 %id)
DA466466   VPS13DandSNORA59A.vb-u 903 to 1459 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
AI493546 adenocarcinoma, Pancreas VPS13DandSNORA59A.vb-u 918 to 1309 392 to 1 exact     392/392
(100 %)
0 diff
(100 %id)
BX504260   VPS13DandSNORA59A.vb-u 1039 to 1656 1 to 615       615/615
(100 %)
4 diff
(99.4 %id)
DB041509 testis VPS13DandSNORA59A.vb-u 1152 to 1705 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BQ380659 uterus_tumor VPS13DandSNORA59A.vb-u 1329 to 1707 379 to 1       379/389
(97 %)
18 diff
(95.4 %id)
AW841803 colon_normal VPS13DandSNORA59A.vb-u 1354 to 1525 184 to 15       170/185
(91 %)
0 diff
(100 %id)
BG677238 skin, squamous cell carcinoma VPS13DandSNORA59A.vb-u 1436 to 2079 1 to 644   tiling clone,   644/644
(100 %)
4 diff
(99.4 %id)
AW377130 colon VPS13DandSNORA59A.vb-u 1461 to 2067 18 to 624   tiling clone,   607/624
(97 %)
10 diff
(98.4 %id)
DB314671   VPS13DandSNORA59A.vb-u 2413 to 2969 557 to 1       557/559
(99 %)
0 diff
(100 %id)
AK022477 mammary gland VPS13DandSNORA59A.vc-u 1 to 2557 2 to 2559 exact tiling clone, available from FLJ,   2559/2559
(100 %)
3 diff
(99.9 %id)
AU122738 mammary gland VPS13DandSNORA59A.vc-u 1 to 858 2 to 858 exact capped   857/860
(99 %)
7 diff
(99.2 %id)
BE070343 breast VPS13DandSNORA59A.vc-u 1427 to 1895 1 to 465   tiling clone,   465/465
(100 %)
6 diff
(98.8 %id)
BE772083 prostate_tumor VPS13DandSNORA59A.vc-u 1452 to 1837 1 to 390       390/390
(100 %)
11 diff
(97.2 %id)
AU148250 mammary gland VPS13DandSNORA59A.vc-u 1994 to 2557 560 to 1   tiling clone,   560/562
(99 %)
11 diff
(98.1 %id)
DB127727 thymus VPS13DandSNORA59A.vd-u 1 to 485 2 to 487 I39N V41C F42I L43F V44S ... tiling clone, capped   486/486
(100 %)
1 diff
(99.8 %id)
TI_44342946   VPS13DandSNORA59A.vd-u 552 to 1402 146 to 993   tiling clone,   848/993
(85 %)
11 diff
(98.9 %id)
BI666923 brain, hypothalamus VPS13DandSNORA59A.vd-u 555 to 1402 1 to 845   tiling clone, available from MGC,   845/845
(100 %)
19 diff
(97.8 %id)
BC042006 Brain, hypothalamus VPS13DandSNORA59A.vd-u 560 to 2228 1 to 1669   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 1669/1669
(100 %)
2 diff
(99.9 %id)
DB484434 hypothalamus VPS13DandSNORA59A.vd-u 562 to 984 1 to 420       420/424
(99 %)
10 diff
(97.7 %id)
DB492133 hypothalamus VPS13DandSNORA59A.vd-u 562 to 994 1 to 433       433/433
(100 %)
3 diff
(99.4 %id)
AA364804 pineal body VPS13DandSNORA59A.vd-u 563 to 746 1 to 184   tiling clone,   184/184
(100 %)
0 diff
(100 %id)
AI623899 adenocarcinoma, Pancreas VPS13DandSNORA59A.vd-u 1781 to 2246 466 to 1   tiling clone,   466/466
(100 %)
0 diff
(100 %id)
DB553384 hypothalamus VPS13DandSNORA59A.vd-u 1790 to 2228 1 to 439     Submitted on the opposite strand 439/439
(100 %)
5 diff
(98.9 %id)
DB563086 hypothalamus VPS13DandSNORA59A.vd-u 1792 to 2228 1 to 434     Submitted on the opposite strand 434/434
(100 %)
6 diff
(98.7 %id)
DB344378 thymus VPS13DandSNORA59A.vd-u 1860 to 2228 369 to 1       369/369
(100 %)
0 diff
(100 %id)
DB023248 testis VPS13DandSNORA59A.ve 1 to 554 2 to 556   tiling clone, capped   555/555
(100 %)
3 diff
(99.5 %id)
DA581555 lung VPS13DandSNORA59A.ve 540 to 714 2 to 176   tiling clone, capped   175/175
(100 %)
1 diff
(99.5 %id)
AI688018 colon VPS13DandSNORA59A.ve 551 to 1036 488 to 3   tiling clone,   486/491
(98 %)
0 diff
(100 %id)
BF513145   VPS13DandSNORA59A.ve 601 to 1034 451 to 18   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 434/443
(97 %)
0 diff
(100 %id)
CD686583 normal nasopharynx VPS13DandSNORA59A.ve 628 to 987 28 to 389       362/389
(93 %)
6 diff
(98.5 %id)
AJ609481.
matches multiple genes
  VPS13DandSNORA59A.ve 637 to 788 1 to 152   tiling clone, also hits gene SNORA59B 152/152
(100 %)
0 diff
(100 %id)
NR_003022.1.
matches multiple genes
  VPS13DandSNORA59A.ve 637 to 788 1 to 152   RefSeq, also hits gene SNORA59B 152/152
(100 %)
0 diff
(100 %id)
NR_003025.1.
matches multiple genes
  VPS13DandSNORA59A.ve 637 to 788 1 to 152   RefSeq, also hits gene SNORA59B 152/152
(100 %)
0 diff
(100 %id)
DQ786227   VPS13DandSNORA59A.ve 651 to 1034 1 to 383   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 383/383
(100 %)
7 diff
(98.2 %id)
AA632625 thyroid VPS13DandSNORA59A.ve 694 to 1040 347 to 1       347/347
(100 %)
3 diff
(99.2 %id)
AI094802 brain, glioblastoma (pooled) VPS13DandSNORA59A.ve 698 to 1035 338 to 1       338/338
(100 %)
1 diff
(99.8 %id)
AA610273 thyroid VPS13DandSNORA59A.ve 739 to 1043 305 to 1   tiling clone,   305/305
(100 %)
2 diff
(99.4 %id)
DB319210 lung VPS13DandSNORA59A.ve 1375 to 1933 559 to 1   tiling clone,   559/559
(100 %)
0 diff
(100 %id)
AK129744 adrenal gland VPS13DandSNORA59A.vf-u 1 to 1637 1 to 1637 exact tiling clone, available from FLJ,   1637/1637
(100 %)
1 diff
(100.0 %id)
DA248136 brain VPS13DandSNORA59A.vg-u 1 to 583 2 to 584 exact tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
BE710187 head_neck VPS13DandSNORA59A.vg-u 109 to 465 429 to 73       357/433
(82 %)
0 diff
(100 %id)
BE710190 head_neck VPS13DandSNORA59A.vg-u 109 to 465 429 to 73       357/433
(82 %)
0 diff
(100 %id)
CB154469 brain VPS13DandSNORA59A.vg-u 127 to 626 1 to 500       500/500
(100 %)
0 diff
(100 %id)
CB155068 brain VPS13DandSNORA59A.vg-u 129 to 579 1 to 451       451/451
(100 %)
0 diff
(100 %id)
AA234277 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 196 to 605 1 to 408       408/411
(99 %)
11 diff
(97.4 %id)
AW953431   VPS13DandSNORA59A.vg-u 335 to 708 15 to 388       374/481
(77 %)
4 diff
(99.2 %id)
AA351807 brain VPS13DandSNORA59A.vg-u 337 to 653 1 to 318       318/318
(100 %)
4 diff
(98.8 %id)
AA351018 brain VPS13DandSNORA59A.vg-u 405 to 662 1 to 262       262/262
(100 %)
6 diff
(97.8 %id)
AW953318   VPS13DandSNORA59A.vg-u 406 to 706 11 to 311       301/315
(95 %)
2 diff
(99.4 %id)
Z43788 brain, total brain VPS13DandSNORA59A.vg-u 406 to 684 1 to 278       278/278
(100 %)
1 diff
(99.7 %id)
R12525 whole brain VPS13DandSNORA59A.vg-u 406 to 560 1 to 155       155/155
(100 %)
6 diff
(96.2 %id)
BX281484 cervix VPS13DandSNORA59A.vg-u 415 to 907 1 to 493       493/493
(100 %)
0 diff
(100 %id)
BE535421 cervix VPS13DandSNORA59A.vg-u 436 to 1153 1 to 714   tiling clone,   714/920
(77 %)
17 diff
(98.2 %id)
TI_154121264   VPS13DandSNORA59A.vg-u 455 to 1446 1062 to 88   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 975/1027
(94 %)
35 diff
(96.6 %id)
AA417705 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 604 to 780 1 to 177       177/177
(100 %)
0 diff
(100 %id)
AA482450 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 604 to 898 1 to 296       296/296
(100 %)
1 diff
(99.7 %id)
AA482457 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 604 to 1004 1 to 401   fully sequenced,   401/401
(100 %)
3 diff
(99.3 %id)
AA425070 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 604 to 1123 1 to 517       517/518
(99 %)
4 diff
(99.3 %id)
BF799125 colon_ins VPS13DandSNORA59A.vg-u 641 to 1063 425 to 4     Submitted on the opposite strand 422/453
(93 %)
0 diff
(100 %id)
BE502967 carcinoid, lung VPS13DandSNORA59A.vg-u 656 to 981 326 to 1       326/326
(100 %)
0 diff
(100 %id)
BM719208 eye, fetal eye VPS13DandSNORA59A.vg-u 672 to 1425 1 to 755   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 755/755
(100 %)
4 diff
(99.5 %id)
BM687317 eye, optic nerve VPS13DandSNORA59A.vg-u 707 to 1084 4 to 381   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 378/381
(99 %)
5 diff
(98.7 %id)
AA433871 ovarian tumor, ovary VPS13DandSNORA59A.vg-u 717 to 1083 1 to 367   fully sequenced,   367/367
(100 %)
1 diff
(99.8 %id)
TI_154126236   VPS13DandSNORA59A.vg-u 718 to 1446 806 to 81   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 726/941
(77 %)
14 diff
(98.6 %id)
TI_154126274   VPS13DandSNORA59A.vg-u 718 to 1446 816 to 90   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 727/939
(77 %)
16 diff
(98.3 %id)
C03611 heart VPS13DandSNORA59A.vg-u 724 to 987 1 to 264       264/264
(100 %)
2 diff
(99.3 %id)
BE305230 adenocarcinoma cell line, colon VPS13DandSNORA59A.vg-u 724 to 1385 672 to 9       664/722
(91 %)
0 diff
(100 %id)
DB560185 hypothalamus VPS13DandSNORA59A.vg-u 726 to 1446 1 to 720     Submitted on the opposite strand 720/720
(100 %)
3 diff
(99.6 %id)
C04520 heart VPS13DandSNORA59A.vg-u 734 to 929 1 to 200       200/200
(100 %)
5 diff
(97.5 %id)
TI_149298602   VPS13DandSNORA59A.vg-u 744 to 1447 805 to 117   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 689/760
(90 %)
29 diff
(96.2 %id)
C03274 heart VPS13DandSNORA59A.vg-u 748 to 993 34 to 288       255/288
(88 %)
6 diff
(98.0 %id)
TI_154103679   VPS13DandSNORA59A.vg-u 751 to 1446 780 to 95   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 686/797
(86 %)
20 diff
(97.5 %id)
C03380 heart VPS13DandSNORA59A.vg-u 768 to 1081 1 to 317       317/317
(100 %)
18 diff
(94.4 %id)
CB243064 Human Lung Epithelial cells, lung VPS13DandSNORA59A.vg-u 769 to 1447 699 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 681/681
(100 %)
4 diff
(99.5 %id)
BU689940 Human Lung Epithelial cells, lung VPS13DandSNORA59A.vg-u 770 to 1446 694 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 676/676
(100 %)
1 diff
(99.9 %id)
CA424611 cell lines, Chondrosarcoma VPS13DandSNORA59A.vg-u 772 to 1447 694 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 676/676
(100 %)
4 diff
(99.5 %id)
AL041023 testis VPS13DandSNORA59A.vg-u 776 to 1449 1 to 674       674/674
(100 %)
0 diff
(100 %id)
FN112686 breast carcinoma VPS13DandSNORA59A.vg-u 788 to 882 91 to 1     Submitted on the opposite strand 91/91
(100 %)
4 diff
(95.7 %id)
BF960957 nervous_normal VPS13DandSNORA59A.vg-u 816 to 952 136 to 1       136/136
(100 %)
3 diff
(97.8 %id)
TI_149282348   VPS13DandSNORA59A.vg-u 841 to 1447 689 to 82   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 608/1157
(52 %)
10 diff
(99.2 %id)
CA442047 lung, Metastatic Chondrosarcoma VPS13DandSNORA59A.vg-u 848 to 1446 617 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 599/599
(100 %)
0 diff
(100 %id)
BM983780 lung, Primary Lung Epithelial Cells VPS13DandSNORA59A.vg-u 869 to 1447 597 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 579/579
(100 %)
2 diff
(99.7 %id)
AI742799 pooled VPS13DandSNORA59A.vg-u 885 to 1446 562 to 1       562/562
(100 %)
0 diff
(100 %id)
BE763241 nervous_tumor VPS13DandSNORA59A.vg-u 887 to 1369 485 to 5       481/510
(94 %)
0 diff
(100 %id)
CA416454 Chondrosarcoma Cell line VPS13DandSNORA59A.vg-u 897 to 1446 569 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 551/551
(100 %)
1 diff
(99.9 %id)
CA416420 Chondrosarcoma Cell line VPS13DandSNORA59A.vg-u 899 to 1446 566 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 548/548
(100 %)
2 diff
(99.7 %id)
AW628558 pooled VPS13DandSNORA59A.vg-u 913 to 1445 535 to 3       533/535
(99 %)
0 diff
(100 %id)
BE763300 nervous_tumor VPS13DandSNORA59A.vg-u 916 to 1374 1 to 458       458/458
(100 %)
6 diff
(98.7 %id)
AI436793 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 920 to 1447 528 to 1       528/528
(100 %)
0 diff
(100 %id)
BF959955 nervous_normal VPS13DandSNORA59A.vg-u 926 to 1441 521 to 7       515/521
(98 %)
0 diff
(100 %id)
AI762735 B-cell, chronic lymphotic leukemia VPS13DandSNORA59A.vg-u 928 to 1446 519 to 3       517/524
(98 %)
0 diff
(100 %id)
CB049644 Prostate VPS13DandSNORA59A.vg-u 937 to 1447 3 to 513   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 511/513
(99 %)
8 diff
(98.5 %id)
AA402694 ovarian tumor, ovary VPS13DandSNORA59A.vg-u 953 to 1448 496 to 1       496/496
(100 %)
0 diff
(100 %id)
BF115983 fibrotheoma, ovary VPS13DandSNORA59A.vg-u 953 to 1445 493 to 1       493/493
(100 %)
0 diff
(100 %id)
DB569015 hypothalamus VPS13DandSNORA59A.vg-u 956 to 1446 1 to 491     Submitted on the opposite strand 491/491
(100 %)
0 diff
(100 %id)
AW341686 pooled VPS13DandSNORA59A.vg-u 959 to 1445 489 to 3       487/489
(99 %)
0 diff
(100 %id)
BQ340019 nervous_normal VPS13DandSNORA59A.vg-u 962 to 1324 506 to 144       363/506
(71 %)
0 diff
(100 %id)
AW341343 carcinoid, lung VPS13DandSNORA59A.vg-u 964 to 1388 1 to 425     Submitted on the opposite strand 425/425
(100 %)
6 diff
(98.6 %id)
BE218620 carcinoid, lung VPS13DandSNORA59A.vg-u 964 to 1414 1 to 451     Submitted on the opposite strand 451/451
(100 %)
0 diff
(100 %id)
DB577077 hypothalamus VPS13DandSNORA59A.vg-u 965 to 1446 1 to 482     Submitted on the opposite strand 482/482
(100 %)
0 diff
(100 %id)
AA873251 Kidney VPS13DandSNORA59A.vg-u 967 to 1450 489 to 6       484/489
(98 %)
0 diff
(100 %id)
AW663367 pooled VPS13DandSNORA59A.vg-u 967 to 1446 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
AI809788 pooled VPS13DandSNORA59A.vg-u 971 to 1450 481 to 2       480/481
(99 %)
0 diff
(100 %id)
AI077324 B-cell, chronic lymphotic leukemia VPS13DandSNORA59A.vg-u 973 to 1447 486 to 12   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 475/475
(100 %)
0 diff
(100 %id)
AI493826 Kidney VPS13DandSNORA59A.vg-u 978 to 1446 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
BF063307 colon, colon tumor, RER+ VPS13DandSNORA59A.vg-u 982 to 1448 467 to 1       467/467
(100 %)
0 diff
(100 %id)
CA445900 Chondrosarcoma, Left Pelvis VPS13DandSNORA59A.vg-u 986 to 1446 479 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 461/461
(100 %)
2 diff
(99.6 %id)
AA417888 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 989 to 1447 458 to 1   fully sequenced,   458/458
(100 %)
3 diff
(99.4 %id)
AI085762 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 989 to 1450 461 to 1       461/461
(100 %)
5 diff
(99.0 %id)
AI275077 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 989 to 1450 463 to 2   tiling clone,   462/463
(99 %)
0 diff
(100 %id)
AI471781 Kidney VPS13DandSNORA59A.vg-u 990 to 1446 458 to 2       457/458
(99 %)
0 diff
(100 %id)
AI240542 liver and spleen VPS13DandSNORA59A.vg-u 991 to 1446 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
DB558363 hypothalamus VPS13DandSNORA59A.vg-u 1001 to 1446 1 to 459     Submitted on the opposite strand 459/459
(100 %)
18 diff
(96.1 %id)
TI_154006770   VPS13DandSNORA59A.vg-u 1001 to 1447 562 to 116   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 447/522
(85 %)
0 diff
(100 %id)
CA434794 lung, Metastatic Chondrosarcoma VPS13DandSNORA59A.vg-u 1001 to 1447 461 to 15   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 447/463
(96 %)
0 diff
(100 %id)
DB563520 hypothalamus VPS13DandSNORA59A.vg-u 1004 to 1446 1 to 441     Submitted on the opposite strand 441/441
(100 %)
7 diff
(98.5 %id)
DB558204 hypothalamus VPS13DandSNORA59A.vg-u 1007 to 1446 1 to 440     Submitted on the opposite strand 440/440
(100 %)
6 diff
(98.7 %id)
AI367041 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 1007 to 1446 441 to 2       440/441
(99 %)
0 diff
(100 %id)
BU684724 lung, Primary Lung Cystic Fibrosis EpithelialCells VPS13DandSNORA59A.vg-u 1011 to 1447 456 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 438/438
(100 %)
4 diff
(99.1 %id)
BF475770 sciatic nerve VPS13DandSNORA59A.vg-u 1013 to 1446 437 to 4       434/437
(99 %)
0 diff
(100 %id)
AA456290 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 1019 to 1450 432 to 2       431/432
(99 %)
0 diff
(100 %id)
BM692333 eye, human retina VPS13DandSNORA59A.vg-u 1019 to 1446 1 to 428   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 428/428
(100 %)
0 diff
(100 %id)
R37420 whole brain VPS13DandSNORA59A.vg-u 1021 to 1450 444 to 5       440/446
(98 %)
0 diff
(100 %id)
AI122612 heart VPS13DandSNORA59A.vg-u 1025 to 1447 443 to 20   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 424/424
(100 %)
3 diff
(99.3 %id)
AI700744 carcinoid, lung VPS13DandSNORA59A.vg-u 1034 to 1446 414 to 1       414/414
(100 %)
2 diff
(99.6 %id)
AI091699 pooled VPS13DandSNORA59A.vg-u 1035 to 1446 412 to 1       412/412
(100 %)
1 diff
(99.8 %id)
AW015307   VPS13DandSNORA59A.vg-u 1039 to 1447 426 to 18   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 409/411
(99 %)
4 diff
(99.1 %id)
AA995964 Kidney VPS13DandSNORA59A.vg-u 1042 to 1446 408 to 3       406/408
(99 %)
0 diff
(100 %id)
AW340351 pooled VPS13DandSNORA59A.vg-u 1051 to 1450 405 to 6       400/405
(98 %)
0 diff
(100 %id)
AA434381 ovarian tumor, ovary VPS13DandSNORA59A.vg-u 1053 to 1446 394 to 1   fully sequenced,   394/394
(100 %)
0 diff
(100 %id)
BM672466 eye, optic nerve VPS13DandSNORA59A.vg-u 1054 to 1446 412 to 20   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 393/393
(100 %)
0 diff
(100 %id)
R38442 whole brain VPS13DandSNORA59A.vg-u 1056 to 1450 405 to 5       401/413
(97 %)
0 diff
(100 %id)
AW771904 Kidney VPS13DandSNORA59A.vg-u 1057 to 1448 392 to 1       392/392
(100 %)
2 diff
(99.5 %id)
BM683157 eye, fetal eye VPS13DandSNORA59A.vg-u 1066 to 1446 400 to 20   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 381/381
(100 %)
1 diff
(99.8 %id)
AI991527 Kidney VPS13DandSNORA59A.vg-u 1067 to 1447 395 to 15   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 381/381
(100 %)
1 diff
(99.8 %id)
BQ440671 leiomyosarcoma, uterus VPS13DandSNORA59A.vg-u 1072 to 1446 1 to 375   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 375/375
(100 %)
0 diff
(100 %id)
DB574150 hypothalamus VPS13DandSNORA59A.vg-u 1089 to 1446 1 to 358     Submitted on the opposite strand 358/358
(100 %)
6 diff
(98.4 %id)
BM993115 lung, Metastatic Chondrosarcoma VPS13DandSNORA59A.vg-u 1089 to 1446 376 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 358/358
(100 %)
2 diff
(99.5 %id)
AA417818 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 1090 to 1447 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
T33654 brain VPS13DandSNORA59A.vg-u 1102 to 1446 348 to 1       348/355
(98 %)
3 diff
(99.2 %id)
AW084106 colon, moderately differentiated adenocarcinoma VPS13DandSNORA59A.vg-u 1103 to 1447 403 to 58   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 346/346
(100 %)
9 diff
(97.4 %id)
Z39854 brain, total brain VPS13DandSNORA59A.vg-u 1104 to 1446 343 to 1       343/343
(100 %)
0 diff
(100 %id)
AW194913 Kidney VPS13DandSNORA59A.vg-u 1106 to 1447 342 to 1       342/342
(100 %)
0 diff
(100 %id)
BF433245 carcinoid, lung VPS13DandSNORA59A.vg-u 1115 to 1450 337 to 1       337/337
(100 %)
7 diff
(98.0 %id)
T15522   VPS13DandSNORA59A.vg-u 1157 to 1447 291 to 1       291/291
(100 %)
1 diff
(99.7 %id)
BM546719 ovary (pool of 3) VPS13DandSNORA59A.vg-u 1166 to 1447 1 to 282   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 282/282
(100 %)
0 diff
(100 %id)
BQ229968 melanotic melanoma, skin VPS13DandSNORA59A.vg-u 1170 to 1446 1 to 277   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 277/277
(100 %)
0 diff
(100 %id)
AI569317 adenocarcinoma, Pancreas VPS13DandSNORA59A.vg-u 1195 to 1450 258 to 3       256/258
(99 %)
0 diff
(100 %id)
BM673588 eye, human retina VPS13DandSNORA59A.vg-u 1196 to 1415 220 to 1   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 220/220
(100 %)
0 diff
(100 %id)
BF961855 nervous_normal VPS13DandSNORA59A.vg-u 1209 to 1432 1 to 219       219/219
(100 %)
5 diff
(97.8 %id)
AA236367 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 1228 to 1447 220 to 1       220/220
(100 %)
0 diff
(100 %id)
AW082513 esophagus, squamous cell carcinoma VPS13DandSNORA59A.vg-u 1243 to 1447 205 to 1       205/205
(100 %)
0 diff
(100 %id)
AA417587 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus VPS13DandSNORA59A.vg-u 1258 to 1447 190 to 1       190/190
(100 %)
0 diff
(100 %id)
AI682855 adenocarcinoma, Pancreas VPS13DandSNORA59A.vg-u 1260 to 1446 206 to 20   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 187/188
(99 %)
4 diff
(97.9 %id)
AI816445 brain, frontal lobe VPS13DandSNORA59A.vg-u 1301 to 1450 1 to 150       150/181
(82 %)
1 diff
(99.5 %id)
AI359540 pooled germ cell tumors VPS13DandSNORA59A.vg-u 1312 to 1447 150 to 15   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 136/136
(100 %)
0 diff
(100 %id)
AI636942 pooled germ cell tumors VPS13DandSNORA59A.vg-u 1312 to 1450 141 to 3       139/141
(98 %)
0 diff
(100 %id)
AI825257 pooled germ cell tumors VPS13DandSNORA59A.vg-u 1312 to 1450 141 to 3       139/141
(98 %)
0 diff
(100 %id)
AI825268 pooled germ cell tumors VPS13DandSNORA59A.vg-u 1312 to 1450 141 to 3       139/141
(98 %)
0 diff
(100 %id)
AI970198 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) VPS13DandSNORA59A.vg-u 1312 to 1450 141 to 3       139/141
(98 %)
0 diff
(100 %id)
BE550409 pooled germ cell tumors VPS13DandSNORA59A.vg-u 1312 to 1450 141 to 3       139/141
(98 %)
0 diff
(100 %id)
BG993794 head_neck VPS13DandSNORA59A.vg-u 1335 to 1439 110 to 4       107/110
(97 %)
0 diff
(100 %id)
BF965304 muscle (skeletal) VPS13DandSNORA59A.vh-u 1 to 695 1 to 696 exact tiling clone,   696/711
(97 %)
7 diff
(99.1 %id)
BU198347   VPS13DandSNORA59A.vh-u 288 to 844 1 to 556   tiling clone,   556/557
(99 %)
5 diff
(99.2 %id)
DW414220 Liver VPS13DandSNORA59A.vi-u 1 to 301 17 to 317 exact tiling clone,   301/317
(94 %)
6 diff
(98.2 %id)
AW962628   VPS13DandSNORA59A.vi-u 89 to 679 589 to 1   tiling clone, Submitted on the opposite strand 589/589
(100 %)
10 diff
(98.4 %id)
AV761986 bone marrow VPS13DandSNORA59A.vj-u 1 to 677 670 to 1 exact tiling clone, Submitted on the opposite strand 670/673
(99 %)
4 diff
(99.5 %id)
BF356970 head_neck VPS13DandSNORA59A.vj-u 80 to 510 429 to 1 S56A     429/444
(96 %)
6 diff
(98.7 %id)
BF356976 head_neck VPS13DandSNORA59A.vj-u 80 to 476 409 to 15 exact     395/411
(96 %)
0 diff
(100 %id)
BF885270 testis_normal VPS13DandSNORA59A.vj-u 80 to 436 357 to 1 G33C   Submitted on the opposite strand 357/359
(99 %)
10 diff
(97.3 %id)
BF885277 testis_normal VPS13DandSNORA59A.vj-u 80 to 442 366 to 8 N77I I78Y   Submitted on the opposite strand 359/368
(97 %)
0 diff
(100 %id)
BF888748 testis_normal VPS13DandSNORA59A.vj-u 80 to 452 379 to 1 exact   Submitted on the opposite strand 379/381
(99 %)
0 diff
(100 %id)
BI048452 testis_normal VPS13DandSNORA59A.vj-u 80 to 482 401 to 2 H53P N76S     400/403
(99 %)
0 diff
(100 %id)
BI048460 testis_normal VPS13DandSNORA59A.vj-u 80 to 476 403 to 7 H53P N76S N77H     397/405
(98 %)
0 diff
(100 %id)
BI059608 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 320 275 to 36       240/277
(86 %)
0 diff
(100 %id)
BI060558 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 396 318 to 1 K26Q V68A M71Y Y72V V73C ...     318/320
(99 %)
18 diff
(94.4 %id)
BQ380425 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 449 389 to 18 V34A S36*     372/391
(95 %)
0 diff
(100 %id)
BQ380549 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 512 12 to 438 S2M I3H A4F L5T Y6G ... tiling clone,   427/443
(96 %)
7 diff
(98.5 %id)
BQ380552 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 492 413 to 1 Y15H     413/415
(99 %)
5 diff
(98.8 %id)
BQ380642 uterus_tumor VPS13DandSNORA59A.vj-u 80 to 512 1 to 431 S2R I3C A4T L5C Y6T ...     431/436
(98 %)
23 diff
(94.8 %id)
BF356999 head_neck VPS13DandSNORA59A.vj-u 87 to 512 1 to 425 I59F     425/430
(98 %)
7 diff
(98.4 %id)
BI059674 uterus_tumor VPS13DandSNORA59A.vj-u 88 to 512 3 to 426 S2M I3T A4L L5A Y6G ...     424/431
(98 %)
14 diff
(96.8 %id)
BQ380550 uterus_tumor VPS13DandSNORA59A.vj-u 88 to 512 2 to 421 S2D I3A A4L L5Y Y6W ...     420/426
(98 %)
15 diff
(96.5 %id)
BF368310 placenta_normal VPS13DandSNORA59A.vj-u 91 to 466 1 to 378 G8R I9D C10L L11P R12Q ...     378/378
(100 %)
3 diff
(99.3 %id)
BQ380423 uterus_tumor VPS13DandSNORA59A.vj-u 94 to 329 20 to 259       240/260
(92 %)
6 diff
(97.7 %id)
BF911479 uterus_tumor VPS13DandSNORA59A.vj-u 100 to 512 1 to 409 S2R I3*     409/414
(98 %)
17 diff
(95.9 %id)
BF335937 colon VPS13DandSNORA59A.vj-u 106 to 496 1 to 389 E22R I23L C24V C25A K26R ...     389/389
(100 %)
8 diff
(98.0 %id)
BF833559 head_neck VPS13DandSNORA59A.vj-u 115 to 510 396 to 1 I9F C10A L11S R12D W13G ...   Submitted on the opposite strand 396/396
(100 %)
15 diff
(96.3 %id)
BF368322 placenta_normal VPS13DandSNORA59A.vj-u 119 to 503 406 to 22 R39A L41A L42F S43V L44S ...     385/406
(94 %)
0 diff
(100 %id)
BF911491 uterus_tumor VPS13DandSNORA59A.vj-u 141 to 512 1 to 369       369/374
(98 %)
8 diff
(97.9 %id)
BF377324 testis_normal VPS13DandSNORA59A.vj-u 144 to 445 49 to 356       308/356
(86 %)
6 diff
(98.4 %id)
BI059592 uterus_tumor VPS13DandSNORA59A.vj-u 153 to 512 8 to 366       359/371
(96 %)
14 diff
(96.3 %id)
BF357001 head_neck VPS13DandSNORA59A.vj-u 158 to 512 373 to 18       356/414
(85 %)
0 diff
(100 %id)
BI060540 uterus_tumor VPS13DandSNORA59A.vj-u 198 to 512 1 to 316       316/321
(98 %)
6 diff
(98.2 %id)
FN167149 breast carcinoma VPS13DandSNORA59A.vj-u 260 to 359 98 to 1     Submitted on the opposite strand 98/98
(100 %)
2 diff
(98.0 %id)
CV368855 placenta_normal VPS13DandSNORA59A.vk-u 1 to 584 15 to 597 exact tiling clone,   583/597
(97 %)
6 diff
(99.0 %id)
DB146570 thymus VPS13DandSNORA59A.vl-u 1 to 550 2 to 553 exact tiling clone, capped   552/552
(100 %)
2 diff
(99.7 %id)
DB277608 uterus VPS13DandSNORA59A.vm 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
AV754336 pituitary tumor VPS13DandSNORA59A.vn-u 1 to 361 1 to 357 exact tiling clone,   357/363
(98 %)
3 diff
(99.2 %id)
BF742038 bocio_tumor VPS13DandSNORA59A.vo 98 to 356 132 to 390 exact tiling clone,   369/390
(94 %)
6 diff
(98.5 %id)
AA947548 ovary VPS13DandSNORA59A.vp-u 1 to 305 1 to 305 exact tiling clone,   305/312
(97 %)
1 diff
(99.7 %id)
BF751638 breast_normal VPS13DandSNORA59A.vq 1 to 188 206 to 21 exact tiling clone, Submitted on the opposite strand 186/206
(90 %)
0 diff
(100 %id)
CV393733 pnet VPS13DandSNORA59A.vr-u 1 to 117 8 to 126 K5E L6T S7L Q8S V9G ... tiling clone,   119/127
(93 %)
10 diff
(92.2 %id)
BM980246 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene VPS13DandSNORA59A, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BU684709 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
BM680172 eye, fetal eye Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
BM724946 eye, fetal eye Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
BF996028 placenta_normal Gene VPS13DandSNORA59A, variant not shown         Suspected internal deletion, this clone was ignored    
CN353763 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene VPS13DandSNORA59A, variant not shown              
AK025257 colon Gene VPS13DandSNORA59A, variant not shown       available from FLJ, AAA This clone was ignored    
AW837680 leiomios Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
DA124298 cerebellum Gene VPS13DandSNORA59A, variant not shown       capped      
R34886 whole brain Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
R49268 whole brain Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
AA648845 germinal center B cell Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
BQ027543 mixed Gene VPS13DandSNORA59A, variant not shown       AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base)    
DB155660 thymus Gene VPS13DandSNORA59A, variant not shown       capped This clone was ignored    
DB346459 thymus Gene VPS13DandSNORA59A, variant not shown         This clone was ignored    
TI_149301971   Gene VPS13DandSNORA59A, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB219080 trachea Gene VPS13DandSNORA59A, variant not shown       capped      
DB349302 trachea Gene VPS13DandSNORA59A, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u, .vc-u, .vd-u, .ve, .vf-u, .vg-u, .vh-u, .vi-u, .vj-u, .vk-u, .vl-u, .vm, .vn-u, .vo, .vp-u, .vq, .vr-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI