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Gene VPS13CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
396 supporting clones for gene VPS13C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB037842 brain .a 1 to 4391 1 to 4391   available from KIAA,   4391/4391
(100 %)
1 diff
(100.0 %id)
AJ608771   .a 1 to 13400 1 to 13400 exact tiling clone,   13400/13400
(100 %)
0 diff
(100 %id)
NM_020821.1   .a 1 to 13400 1 to 13400 exact RefSeq,   13400/13400
(100 %)
0 diff
(100 %id)
BM146303 leukopheresis .a 22 to 330 1 to 309       309/309
(100 %)
11 diff
(96.5 %id)
DA800629 brain .a 24 to 571 2 to 549   capped   548/549
(99 %)
1 diff
(99.9 %id)
BM152106 leukopheresis .a 45 to 458 1 to 414       414/414
(100 %)
2 diff
(99.6 %id)
DB482340 hippocampus .a 59 to 552 1 to 494       494/494
(100 %)
2 diff
(99.6 %id)
BU170978 eye, retinoblastoma .a 1199 to 1946 1 to 755       755/931
(81 %)
19 diff
(98.0 %id)
BP871949 embryonal kidney .a 1397 to 1978 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
CD244409 testis .a 1732 to 2481 35 to 786       752/950
(79 %)
14 diff
(98.6 %id)
BX646423   .a 1764 to 2366 1 to 603       603/603
(100 %)
1 diff
(99.9 %id)
BF907965 uterus_tumor .a 2167 to 2312 153 to 8     Submitted on the opposite strand 146/153
(95 %)
0 diff
(100 %id)
BE247063 leukopheresis .a 2949 to 3255 307 to 1       307/307
(100 %)
4 diff
(98.7 %id)
BX091185 B-cell, chronic lymphotic leukemia .a 3396 to 3804 1 to 409       409/409
(100 %)
0 diff
(100 %id)
BM930556 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3543 to 4013 1 to 471   fully sequenced,   471/471
(100 %)
0 diff
(100 %id)
AA714793 germinal center B cell .a 3826 to 4397 575 to 4       572/575
(99 %)
1 diff
(99.9 %id)
AI760563 B-cell, chronic lymphotic leukemia .a 3874 to 4394 521 to 1       521/521
(100 %)
0 diff
(100 %id)
BM684146 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3952 to 4409 459 to 1   fully sequenced,   459/459
(100 %)
1 diff
(99.8 %id)
AA682572 liver and spleen .a 4196 to 4391 196 to 1       196/196
(100 %)
0 diff
(100 %id)
AV703288 adrenal gland .a 4240 to 4634 1 to 395       395/400
(98 %)
1 diff
(99.8 %id)
AK128650 trachea .a 5570 to 10572 1 to 5003   available from FLJ,   5003/5003
(100 %)
4 diff
(100.0 %id)
DB239274 trachea .a 5571 to 6150 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BG673767 Nasal biopsy .a 5651 to 5913 264 to 1     Submitted on the opposite strand 264/264
(100 %)
2 diff
(99.3 %id)
CR936716 endometrium carcinoma cell line .a 6572 to 13391 1 to 6889   AAA   6820/6889
(98 %)
29 diff
(99.6 %id)
DR005776 Prostate .a 6922 to 7326 1 to 405       405/405
(100 %)
0 diff
(100 %id)
AL040500 testis .a 7074 to 7597 1 to 524       524/524
(100 %)
0 diff
(100 %id)
AL040206 testis .a 7074 to 7280 1 to 207       207/207
(100 %)
0 diff
(100 %id)
CF143834 lymph .a 7286 to 7604 7 to 325       319/326
(97 %)
7 diff
(97.9 %id)
DN990526 brain, whole brain .a 7824 to 8344 8 to 527       520/528
(98 %)
2 diff
(99.7 %id)
BF852894 lung_normal .a 7888 to 8412 526 to 1     Submitted on the opposite strand 526/575
(91 %)
5 diff
(99.2 %id)
BP354617   .a 7919 to 8500 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AU124347   .a 7939 to 8723 2 to 789   capped   788/875
(90 %)
4 diff
(99.6 %id)
CF135978 lymph .a 7951 to 8683 8 to 739       732/739
(99 %)
7 diff
(99.1 %id)
TI_154164693   .a 7951 to 8899 76 to 1015       940/942
(99 %)
20 diff
(97.9 %id)
DA234321 brain .a 8103 to 8678 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
BF853819 lung_normal .a 8104 to 8420 1 to 315       315/316
(99 %)
2 diff
(99.4 %id)
EH344184   .a 8195 to 8278 1 to 84       84/84
(100 %)
0 diff
(100 %id)
BX109605 carcinoid, lung .a 8476 to 8881 412 to 7     Submitted on the opposite strand 406/413
(98 %)
3 diff
(99.3 %id)
AA988538 carcinoid, lung .a 8490 to 8843 1 to 354     Submitted on the opposite strand 354/354
(100 %)
1 diff
(99.8 %id)
AL707250 human skeletal muscle .a 8527 to 9069 1 to 544       544/544
(100 %)
2 diff
(99.7 %id)
AL696104 human skeletal muscle .a 8673 to 9233 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
BM454286 lymph, lymphoma, cell line .a 8681 to 9635 1 to 965       965/1069
(90 %)
28 diff
(97.4 %id)
DA159581 amygdala .a 8789 to 9343 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
CR984164 T-Lymphocytes .a 8808 to 9681 1 to 874       874/878
(99 %)
6 diff
(99.4 %id)
DB066507 testis .a 8871 to 9420 2 to 552   capped   551/554
(99 %)
5 diff
(99.1 %id)
AB040361 testis_normal .a 8935 to 9162 1 to 233       233/258
(90 %)
8 diff
(96.9 %id)
BX648766 human uterus .a 9032 to 13390 1 to 4357   available from DKFZ, AAA   4357/4357
(100 %)
8 diff
(99.9 %id)
BF746452 breast .a 9051 to 9408 35 to 391       358/392
(91 %)
9 diff
(97.8 %id)
BF945238 nervous_normal .a 9083 to 9578 19 to 514       496/514
(96 %)
7 diff
(98.7 %id)
BF959571 nervous_normal .a 9083 to 9597 14 to 528       515/528
(97 %)
7 diff
(98.7 %id)
BF960073 nervous_normal .a 9083 to 9300 223 to 6       218/223
(97 %)
1 diff
(99.6 %id)
BF958689 nervous_normal .a 9092 to 9483 1 to 392       392/392
(100 %)
0 diff
(100 %id)
DN992439 brain, whole brain .a 9093 to 9749 9 to 666       658/666
(98 %)
8 diff
(98.8 %id)
BQ342603 nervous_normal .a 9119 to 9437 11 to 329       319/329
(96 %)
8 diff
(97.6 %id)
BE618199 eye, retinoblastoma .a 9207 to 9966 1 to 753       753/789
(95 %)
20 diff
(97.5 %id)
AL833377 lymph node .a 9383 to 13390 1 to 4006   available from DKFZ, AAA   4006/4006
(100 %)
3 diff
(100.0 %id)
AK123851   .a 9426 to 13399 1 to 3982   available from FLJ,   3982/3982
(100 %)
7 diff
(99.9 %id)
AW500775 lymph .a 9427 to 9853 1 to 427       427/436
(97 %)
10 diff
(97.8 %id)
DA724789   .a 9427 to 9993 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CB999574 Pooled-Skin .a 9433 to 9971 1 to 542       542/772
(70 %)
11 diff
(98.6 %id)
TI_154155049   .a 9434 to 9966 80 to 613       534/556
(96 %)
18 diff
(96.8 %id)
BQ343049 nervous_normal .a 9509 to 9746 240 to 3       238/240
(99 %)
0 diff
(100 %id)
DA447035 tongue, tumor tissue .a 9579 to 10152 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
BI043890 ovary .a 9584 to 10087 1 to 503       503/503
(100 %)
10 diff
(98.1 %id)
BQ322168 colon .a 9607 to 10019 7 to 416       410/416
(98 %)
11 diff
(97.4 %id)
DB244723 uterus, tumor tissue .a 9612 to 10170 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB234780 trachea .a 9626 to 10184 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB239801 trachea .a 9673 to 10261 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
BQ343176 nervous_normal .a 9700 to 9940 241 to 1       241/241
(100 %)
5 diff
(98.0 %id)
CD706041 normal nasopharynx .a 9735 to 10216 22 to 503       482/510
(94 %)
9 diff
(98.3 %id)
DB234841 trachea .a 9735 to 10306 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BE618753 eye, retinoblastoma .a 9787 to 10504 754 to 15       695/755
(92 %)
36 diff
(95.3 %id)
DA244198 brain .a 9798 to 10391 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
BP379432 uterus .a 9845 to 10428 1 to 584       584/584
(100 %)
0 diff
(100 %id)
AW468066 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 9969 to 10573 605 to 1       605/605
(100 %)
0 diff
(100 %id)
DB212383 trachea .a 9969 to 10530 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA118579 cerebellum .a 9983 to 10530 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
AK000143 colon .a 9985 to 13400 1 to 3419   available from FLJ, AAA   3419/3419
(100 %)
4 diff
(99.9 %id)
BP221101 colon .a 9985 to 10543 1 to 559       559/561
(99 %)
16 diff
(97.2 %id)
BC069387 PCR rescued clones .a 9985 to 11644 1 to 1660   available from MGC,   1660/1660
(100 %)
0 diff
(100 %id)
BP299074   .a 10005 to 10586 1 to 581   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 580/582
(99 %)
8 diff
(98.7 %id)
DA227696 brain .a 10006 to 10575 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA991961 synovial membrane tissue from rheumatioidarthritis .a 10006 to 10298 2 to 294   capped   293/293
(100 %)
1 diff
(99.7 %id)
DA853545 placenta .a 10007 to 10575 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BU431425 lymph .a 10010 to 10523 1 to 514       514/514
(100 %)
5 diff
(99.1 %id)
TI_154153355   .a 10017 to 10616 80 to 678       599/604
(99 %)
4 diff
(99.4 %id)
DB350501 trachea .a 10029 to 10572 544 to 1       544/544
(100 %)
0 diff
(100 %id)
AW897644 nervous_normal .a 10034 to 10426 5 to 396       392/396
(98 %)
7 diff
(98.3 %id)
DB019334 esophageal, tumor tissue .a 10039 to 10623 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
AW897647 nervous_normal .a 10040 to 10416 10 to 391       382/397
(96 %)
23 diff
(94.3 %id)
CN427092 embryonic stem cells, cell lines H1, H7, andH9 .a 10060 to 10732 1 to 673       673/673
(100 %)
0 diff
(100 %id)
DA991382 synovial membrane tissue from rheumatioidarthritis .a 10060 to 10603 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
AW238267 carcinoma in situ from retromolar trigone .a 10079 to 10568 1 to 490     Submitted on the opposite strand 490/490
(100 %)
15 diff
(97.0 %id)
BI043612 ovary .a 10108 to 10544 454 to 18       437/454
(96 %)
3 diff
(99.4 %id)
BE179313 head_neck .a 10164 to 10444 1 to 280       280/280
(100 %)
3 diff
(99.0 %id)
DW435036 Liver .a 10169 to 10410 16 to 257       242/257
(94 %)
6 diff
(97.7 %id)
BF814967 colon_ins .a 10203 to 10521 320 to 2     Submitted on the opposite strand 319/320
(99 %)
16 diff
(95.0 %id)
DB226675 trachea .a 10213 to 10744 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DW414578 Liver .a 10313 to 10586 17 to 290   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 274/315
(86 %)
17 diff
(94.7 %id)
CB105682 Liver .a 10315 to 10581 1 to 267   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 267/271
(98 %)
2 diff
(99.3 %id)
ES307587 beard hair, skin .a 10358 to 10578 1 to 221       221/222
(99 %)
1 diff
(99.6 %id)
AW872506 normal epithelium, thyroid .a 10371 to 10588 1 to 218     Submitted on the opposite strand 218/219
(99 %)
11 diff
(95.0 %id)
CD628474   .a 10411 to 10930 520 to 1       520/520
(100 %)
2 diff
(99.7 %id)
CD628473   .a 10412 to 10931 1 to 520       520/520
(100 %)
3 diff
(99.5 %id)
FN113592 breast carcinoma .a 10479 to 10572 1 to 95       95/95
(100 %)
1 diff
(99.0 %id)
FN131838 breast carcinoma .a 10513 to 10571 1 to 60       60/62
(96 %)
2 diff
(96.8 %id)
BE173335 head_neck .a 10516 to 11075 563 to 4     Submitted on the opposite strand 560/563
(99 %)
3 diff
(99.5 %id)
BP344355 synovial membrane .a 10559 to 11141 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BF912222 uterus_tumor .a 10560 to 10921 17 to 378       362/378
(95 %)
16 diff
(95.8 %id)
BU171775 melanotic melanoma, skin .a 10587 to 11432 23 to 876       854/880
(97 %)
19 diff
(97.9 %id)
AA305956   .a 10703 to 11223 1 to 521       521/521
(100 %)
0 diff
(100 %id)
AW389601 stomach .a 10707 to 11269 17 to 579       563/579
(97 %)
9 diff
(98.5 %id)
BF478203 pooled germ cell tumors .a 10743 to 10935 193 to 1       193/193
(100 %)
17 diff
(91.2 %id)
DB250152 uterus .a 10752 to 11233 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
BE708424 head_neck .a 10835 to 11059 253 to 29       225/253
(88 %)
1 diff
(99.7 %id)
AW367979 head_neck .a 10882 to 11234 1 to 355       355/355
(100 %)
17 diff
(95.3 %id)
BF095273 uterus_tumor .a 10886 to 11234 359 to 11       349/359
(97 %)
12 diff
(96.7 %id)
AW799181 uterus .a 10894 to 11129 1 to 236       236/237
(99 %)
10 diff
(95.8 %id)
AW858807 colon .a 10907 to 11045 1 to 139       139/139
(100 %)
0 diff
(100 %id)
AW858909 colon .a 10907 to 11077 170 to 3       168/170
(98 %)
4 diff
(97.7 %id)
BE927408 colon .a 10907 to 11069 172 to 10       163/172
(94 %)
0 diff
(100 %id)
AA360676   .a 11018 to 11312 1 to 295       295/295
(100 %)
6 diff
(98.0 %id)
AA993820   .a 11051 to 11450 400 to 1     Submitted on the opposite strand 400/400
(100 %)
0 diff
(100 %id)
AI393840 pooled .a 11065 to 11528 470 to 7       464/470
(98 %)
0 diff
(100 %id)
AW389619 stomach .a 11085 to 11304 221 to 1       221/221
(100 %)
3 diff
(98.7 %id)
DB212127 trachea .a 11089 to 11441 2 to 354   capped   353/353
(100 %)
3 diff
(99.2 %id)
BP292864 lung .a 11124 to 11705 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP293123 lung .a 11124 to 11705 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA167888 amygdala .a 11140 to 11711 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA165205 amygdala .a 11145 to 11711 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BP220445 colon .a 11228 to 11784 1 to 559       559/566
(98 %)
13 diff
(97.8 %id)
AK025014 colon .a 11229 to 13390 1 to 2165   available from FLJ, AAA   2165/2165
(100 %)
10 diff
(99.6 %id)
BG288143 bladder, transitional cell papilloma, cell line .a 11240 to 11900 1 to 655       655/904
(72 %)
13 diff
(98.6 %id)
AI337025 pooled germ cell tumors .a 11276 to 11736 494 to 34   AAA   461/483
(95 %)
0 diff
(100 %id)
BG498301 adenocarcinoma, Prostate .a 11276 to 11727 1 to 456       456/966
(47 %)
8 diff
(99.2 %id)
AI638291 pooled germ cell tumors .a 11279 to 11736 491 to 34   AAA   458/480
(95 %)
0 diff
(100 %id)
BP327254 prostata .a 11323 to 11748 1 to 428       428/432
(99 %)
3 diff
(99.4 %id)
CK001778 brain/CNS, Bulk tissue from Human Spinal cord .a 11357 to 12042 1 to 683       683/695
(98 %)
8 diff
(98.9 %id)
AI828846 pooled germ cell tumors .a 11359 to 11736 411 to 34   AAA   378/400
(94 %)
0 diff
(100 %id)
CD359880 testis .a 11377 to 11984 1 to 614       614/947
(64 %)
21 diff
(97.8 %id)
CB216965 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 11386 to 11973 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BP345753 synovial membrane .a 11437 to 12018 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
BP346440 synovial membrane .a 11437 to 12017 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
DA258645 caudate nucleus .a 11439 to 11938 2 to 503   capped   502/502
(100 %)
8 diff
(98.5 %id)
BP225412   .a 11441 to 11924 1 to 485       485/570
(85 %)
54 diff
(90.6 %id)
DB242785 stomach, tumor tissue .a 11515 to 12031 2 to 518   capped   517/517
(100 %)
3 diff
(99.5 %id)
CD690025 normal nasopharynx .b 1 to 514 15 to 530   tiling clone,   516/530
(97 %)
8 diff
(98.5 %id)
AJ608770   .b 26 to 13296 1 to 13271   tiling clone,   13271/13271
(100 %)
0 diff
(100 %id)
NM_017684.3   .b 26 to 13296 1 to 13271   RefSeq, AAA   13271/13271
(100 %)
0 diff
(100 %id)
CD684075 normal nasopharynx .b 27 to 368 23 to 364       342/364
(93 %)
6 diff
(98.4 %id)
AK307518 brain .b 84 to 3153 1 to 3070       3070/3070
(100 %)
6 diff
(99.9 %id)
DA349886 substantia nigra .b 85 to 633 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DA507444 brain .b 85 to 624 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AK025364 colon .b 358 to 4293 1 to 3936   available from FLJ, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 3936/3947
(99 %)
6 diff
(99.9 %id)
AJ626861   .c 1 to 11141 1 to 11141 exact tiling clone,   11141/11141
(100 %)
0 diff
(100 %id)
NM_001018088.1   .c 1 to 11141 1 to 11141 exact RefSeq,   11141/11141
(100 %)
0 diff
(100 %id)
BE222324 carcinoid, lung .c 10761 to 11141 381 to 1       381/381
(100 %)
0 diff
(100 %id)
BE502925 carcinoid, lung .c 10761 to 11133 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
BF477993 carcinoid, lung .c 10762 to 11143 384 to 3       382/384
(99 %)
1 diff
(99.8 %id)
CF455973 peripheral nervous system .c 10776 to 11506 24 to 753   tiling clone,   730/753
(96 %)
10 diff
(98.7 %id)
CR744644 multiple sclerosis lesions .c 10803 to 11452 1 to 649       649/649
(100 %)
1 diff
(99.9 %id)
BG483216 lung .c 11028 to 11739 1 to 710   tiling clone,   710/710
(100 %)
16 diff
(97.8 %id)
BX116618 whole brain .c 11501 to 11923 436 to 15   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 422/422
(100 %)
2 diff
(99.6 %id)
DA139760 alzheimer cortex .c 11642 to 12212 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
N53369 multiple sclerosis lesions .c 11791 to 12109 319 to 1       319/319
(100 %)
9 diff
(97.2 %id)
DA214162 brain .c 11922 to 12460 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
AL713399 human skeletal muscle .c 11928 to 12397 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
BX953407   .c 11946 to 12424 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
DA216943 brain .c 11992 to 12531 2 to 541   tiling clone, capped   540/540
(100 %)
0 diff
(100 %id)
DA266681 caudate nucleus .c 12060 to 12617 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
BX490717   .c 12286 to 12881 1 to 596   tiling clone,   596/596
(100 %)
6 diff
(99.0 %id)
BM553681 duodenal adenocarcinoma, cell line, small intestine .c 12535 to 13347 1 to 818   tiling clone,   818/1066
(76 %)
33 diff
(97.0 %id)
DR033685 brain, Right frontal lobe .c 12544 to 13130 16 to 600   tiling clone,   585/600
(97 %)
6 diff
(99.0 %id)
DA244878 brain .c 12607 to 13178 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BU429669 lymph .c 13401 to 13976 1 to 576   tiling clone,   576/576
(100 %)
6 diff
(99.0 %id)
TI_154150845   .c 13408 to 14167 78 to 837       760/761
(99 %)
4 diff
(99.5 %id)
H00140 whole brain .c 13507 to 13867 1 to 367     Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 367/376
(97 %)
7 diff
(98.2 %id)
BX097538 multiple sclerosis lesions .c 13633 to 14378 1 to 747       747/748
(99 %)
6 diff
(99.2 %id)
DA860942 placenta .c 13651 to 14194 2 to 546   tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
AL712070 human skeletal muscle .c 13682 to 14232 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
AA284312 germinal center B cell .c 13815 to 14007 1 to 193       193/193
(100 %)
0 diff
(100 %id)
DB306862 caudate nucleus .c 14042 to 14578 540 to 1   tiling clone,   540/540
(100 %)
4 diff
(99.3 %id)
H05069 whole brain .c 14190 to 14578 407 to 13   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 395/395
(100 %)
7 diff
(98.3 %id)
AA292722 germinal center B cell .c 14510 to 14884 375 to 1   tiling clone,   375/375
(100 %)
0 diff
(100 %id)
AJ626860   .d 1 to 11012 1 to 11012 exact tiling clone,   11012/11012
(100 %)
0 diff
(100 %id)
NM_018080.2   .d 1 to 11012 1 to 11012 exact RefSeq,   11012/11012
(100 %)
0 diff
(100 %id)
AK304408 trachea .e 1 to 2522 1 to 2522 exact tiling clone,   2522/2522
(100 %)
7 diff
(99.8 %id)
DC418767 trachea .e 1 to 586 1 to 587       587/587
(100 %)
4 diff
(99.4 %id)
AK001243   .f 1 to 1862 2 to 1863 S291N tiling clone, available from FLJ,   1863/1863
(100 %)
3 diff
(99.9 %id)
BM153292 leukopheresis .g 1 to 495 512 to 18   tiling clone, AAA   495/495
(100 %)
3 diff
(99.4 %id)
BE245868 leukopheresis .g 16 to 495 480 to 1   tiling clone,   480/480
(100 %)
4 diff
(99.2 %id)
DB551201 hippocampus .g 465 to 940 1 to 476   tiling clone, Submitted on the opposite strand 476/477
(99 %)
1 diff
(99.8 %id)
BX480649   .h 1 to 617 1 to 617 E14Q G101V tiling clone,   617/617
(100 %)
6 diff
(99.1 %id)
AI382154 pooled .i 1 to 559 561 to 3 exact tiling clone,   559/561
(99 %)
0 diff
(100 %id)
AW977323   .j 1 to 549 549 to 1 exact tiling clone, Submitted on the opposite strand 549/549
(100 %)
1 diff
(99.9 %id)
BF514622   .j 38 to 550 530 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 513/513
(100 %)
0 diff
(100 %id)
AA828418 germinal center B cell .j 99 to 487 390 to 1       390/390
(100 %)
4 diff
(99.0 %id)
AA765767 germinal center B cell .j 115 to 487 372 to 1       372/372
(100 %)
1 diff
(99.8 %id)
AA971149 pooled .j 147 to 550 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
AA765201 germinal center B cell .j 338 to 558 223 to 2   tiling clone,   222/228
(97 %)
3 diff
(98.7 %id)
DA798078 brain .k 1 to 330 2 to 331   tiling clone, capped   330/330
(100 %)
1 diff
(99.7 %id)
BX648470 human colon endothel primary cell culture .k 56 to 3739 1 to 3683 exact tiling clone, available from DKFZ, AAA   3683/3683
(100 %)
5 diff
(99.9 %id)
N53520 multiple sclerosis lesions .k 93 to 509 431 to 12   AAA   420/420
(100 %)
6 diff
(98.6 %id)
BE219698 carcinoid, lung .k 103 to 510 411 to 4       408/411
(99 %)
0 diff
(100 %id)
DA194040 amygdala .k 438 to 1019 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DB132726 thymus .k 438 to 964 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
BI769232 pooled lung and spleen .k 462 to 1289 1 to 828       828/833
(99 %)
26 diff
(96.9 %id)
TI_57183247   .k 462 to 1289 31 to 858       828/863
(95 %)
26 diff
(97.0 %id)
DA307582 hippocampus .k 976 to 1567 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DB250833 uterus .k 1985 to 2543 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CB986235 Pooled-Glandular .k 2044 to 2660 1 to 627       627/803
(78 %)
22 diff
(97.3 %id)
BG654519 Pancreas, Purified pancreatic islet .k 2062 to 2461 22 to 420       399/420
(95 %)
6 diff
(98.6 %id)
BM511667 insulinoma, Pancreas .k 2087 to 2690 1 to 603     Submitted on the opposite strand 603/603
(100 %)
3 diff
(99.6 %id)
BM511604 insulinoma, Pancreas .k 2087 to 2591 1 to 504     Submitted on the opposite strand 504/504
(100 %)
3 diff
(99.5 %id)
BG702872 brain, hippocampus .k 2136 to 2823 1 to 682       682/682
(100 %)
32 diff
(95.4 %id)
CF139671 CNCAP(3)T-225 cell line, Prostate .k 2208 to 2653 8 to 451       444/451
(98 %)
12 diff
(97.4 %id)
TI_154169923   .k 2208 to 2801 80 to 670       591/593
(99 %)
11 diff
(98.2 %id)
BM511457 insulinoma, Pancreas .k 2253 to 2819 8 to 574   tiling clone,   567/574
(98 %)
6 diff
(99.0 %id)
N33812.
matches multiple genes
melanocyte .k 2278 to 2719 1 to 451     also hits gene MAL 451/464
(97 %)
10 diff
(97.9 %id)
CN427091 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .k 2288 to 2569 1 to 282       282/282
(100 %)
0 diff
(100 %id)
BU079179 Pancreas, Purified pancreatic islet .k 2421 to 3012 7 to 598       592/598
(98 %)
6 diff
(99.0 %id)
AA744787 germinal center B cell .k 2438 to 2909 1 to 471     Submitted on the opposite strand 471/471
(100 %)
1 diff
(99.8 %id)
BF540918 hypernephroma, Kidney .k 2464 to 3191 1 to 716       716/791
(90 %)
31 diff
(96.1 %id)
BF696367 brain, primitive neuroectoderm .k 2464 to 3109 1 to 640       640/891
(71 %)
12 diff
(98.7 %id)
BF215837 brain, glioblastoma .k 2523 to 3011 1 to 490       490/490
(100 %)
4 diff
(99.2 %id)
CB147034 Liver .k 2528 to 3098 1 to 571       571/571
(100 %)
0 diff
(100 %id)
AW341111 carcinoid, lung .k 2536 to 3071 1 to 535     Submitted on the opposite strand 535/535
(100 %)
4 diff
(99.3 %id)
AI292080 carcinoid, lung .k 2549 to 3023 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
AA044864 uterus .k 2601 to 3154 11 to 561       551/561
(98 %)
6 diff
(99.0 %id)
AI817131 pooled .k 2633 to 3081 457 to 9       449/457
(98 %)
0 diff
(100 %id)
BG536706 lung .k 2677 to 3475 1 to 795       795/809
(98 %)
38 diff
(95.4 %id)
BG547296 lung .k 2677 to 3454 1 to 775       775/776
(99 %)
9 diff
(98.9 %id)
R34571 placenta .k 2699 to 2963 1 to 271       271/328
(82 %)
12 diff
(96.4 %id)
CB106125 Liver .k 2736 to 2915 1 to 181       181/181
(100 %)
7 diff
(96.2 %id)
BM769107 stomach .k 2738 to 3248 1 to 511       511/511
(100 %)
2 diff
(99.7 %id)
BG818300 anaplastic oligodendroglioma with 1p/19qloss, brain .k 2755 to 3490 11 to 749       739/753
(98 %)
15 diff
(98.1 %id)
BU929247 placenta .k 2762 to 3468 1 to 721       721/832
(86 %)
35 diff
(95.8 %id)
BF224116 carcinoid, lung .k 2772 to 3237 466 to 1       466/466
(100 %)
0 diff
(100 %id)
BG539786 lung .k 2773 to 3510 1 to 740       740/780
(94 %)
30 diff
(96.2 %id)
BG290563 bladder, transitional cell papilloma, cell line .k 2780 to 3545 1 to 765   AAA   765/947
(80 %)
38 diff
(96.0 %id)
N79726 multiple sclerosis lesions .k 2813 to 2950 1 to 139       139/139
(100 %)
2 diff
(98.6 %id)
BF938957 carcinoid, lung .k 2814 to 3295 1 to 482     Submitted on the opposite strand 482/487
(98 %)
2 diff
(99.6 %id)
BM699441 eye, fetal eyes .k 2828 to 3335 1 to 507   fully sequenced,   507/507
(100 %)
1 diff
(99.9 %id)
FN078047 breast carcinoma .k 2844 to 2924 1 to 80       80/81
(98 %)
4 diff
(95.1 %id)
FN046876 breast carcinoma .k 2845 to 2924 1 to 80       80/81
(98 %)
1 diff
(98.8 %id)
BF102579 adenocarcinoma, Prostate .k 2881 to 3499 1 to 609       609/672
(90 %)
46 diff
(93.2 %id)
TI_149315543   .k 2901 to 3740 942 to 116   AAA   827/946
(87 %)
29 diff
(97.0 %id)
R66959 placenta .k 2946 to 3275 1 to 341       341/341
(100 %)
16 diff
(95.4 %id)
AW373498 breast .k 2982 to 3250 1 to 271       271/271
(100 %)
19 diff
(93.0 %id)
AW364212 denis_drash .k 2983 to 3250 10 to 277       268/277
(96 %)
6 diff
(97.9 %id)
AW373499 breast .k 2983 to 3247 17 to 282       266/285
(93 %)
18 diff
(93.7 %id)
AW385447 leiomios .k 2988 to 3250 28 to 285       258/285
(90 %)
6 diff
(97.9 %id)
AW580662 leiomios .k 2989 to 3250 1 to 260       260/260
(100 %)
6 diff
(97.7 %id)
AW580658 leiomios .k 2996 to 3250 34 to 287       254/287
(88 %)
6 diff
(98.0 %id)
AW385439 leiomios .k 2997 to 3246 253 to 2       252/253
(99 %)
0 diff
(100 %id)
AW385443 leiomios .k 2997 to 3240 247 to 1       247/247
(100 %)
8 diff
(96.8 %id)
AW834905 leiomios .k 2997 to 3250 1 to 254       254/254
(100 %)
7 diff
(97.3 %id)
AW834910 leiomios .k 2997 to 3250 254 to 1       254/254
(100 %)
1 diff
(99.7 %id)
AW834937 leiomios .k 2997 to 3263 278 to 4       275/278
(98 %)
0 diff
(100 %id)
AW834967 leiomios .k 2997 to 3250 256 to 1       256/256
(100 %)
4 diff
(98.5 %id)
AW364210 denis_drash .k 2998 to 3250 1 to 255       255/255
(100 %)
15 diff
(94.2 %id)
AW834897 leiomios .k 2998 to 3250 1 to 251       251/251
(100 %)
6 diff
(97.7 %id)
AW580651 leiomios .k 2999 to 3250 37 to 287       251/287
(87 %)
6 diff
(98.0 %id)
AW580660 leiomios .k 3000 to 3250 1 to 251       251/251
(100 %)
6 diff
(97.7 %id)
BF357802 leiomios .k 3003 to 3250 4 to 250       247/250
(98 %)
6 diff
(97.6 %id)
AW580654 leiomios .k 3004 to 3250 1 to 245       245/245
(100 %)
5 diff
(98.0 %id)
TI_149304495   .k 3022 to 3740 806 to 87   AAA   720/955
(75 %)
4 diff
(99.6 %id)
BG654587 Pancreas, Purified pancreatic islet .k 3025 to 3416 406 to 15     Submitted on the opposite strand 392/406
(96 %)
0 diff
(100 %id)
AI683205 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 3025 to 3414 401 to 11   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 391/391
(100 %)
2 diff
(99.5 %id)
TI_149282557   .k 3025 to 3740 796 to 81   AAA   716/716
(100 %)
3 diff
(99.6 %id)
BF154748 breast .k 3026 to 3250 1 to 225       225/225
(100 %)
3 diff
(98.7 %id)
CA311739 Human Lung Epithelial cells, lung .k 3026 to 3738 730 to 19   AAA   712/712
(100 %)
1 diff
(99.9 %id)
AW364211 denis_drash .k 3038 to 3248 218 to 4       215/218
(98 %)
0 diff
(100 %id)
TI_149274473   .k 3048 to 3631 116 to 699     Submitted on the opposite strand 584/1042
(56 %)
6 diff
(99.5 %id)
BU676143 lung, Primary Lung Epithelial Cells .k 3048 to 3631 51 to 634     Submitted on the opposite strand 584/651
(89 %)
6 diff
(99.1 %id)
BU679870 lung, Primary Lung Epithelial Cells .k 3049 to 3740 710 to 19   tiling clone, AAA   692/692
(100 %)
1 diff
(99.9 %id)
BF747247 breast .k 3058 to 3250 1 to 192       192/192
(100 %)
9 diff
(95.4 %id)
CA413453 Chondrosarcoma Grade II, Left Pelvis .k 3076 to 3740 683 to 19   AAA   665/665
(100 %)
1 diff
(99.9 %id)
AI494552 B-cell, chronic lymphotic leukemia .k 3084 to 3473 406 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 389/389
(100 %)
2 diff
(99.5 %id)
AI934363 Kidney .k 3106 to 3740 640 to 6       635/640
(99 %)
0 diff
(100 %id)
BU685398 lung, Primary Lung Epithelial Cells .k 3110 to 3740 649 to 19   AAA   631/631
(100 %)
0 diff
(100 %id)
AI818054 lymph node, lymphoma, follicular mixed small and largecell .k 3116 to 3476 374 to 14   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 361/361
(100 %)
0 diff
(100 %id)
CA414898 Chondrosarcoma Grade II, Left Pelvis .k 3123 to 3750 647 to 19   AAA   629/629
(100 %)
2 diff
(99.7 %id)
AW364209 denis_drash .k 3133 to 3246 113 to 1       113/113
(100 %)
0 diff
(100 %id)
BU078895 Pancreas, Purified pancreatic islet .k 3142 to 3751 610 to 1       610/610
(100 %)
0 diff
(100 %id)
BM510623 insulinoma, Pancreas .k 3145 to 3740 619 to 24   AAA   596/596
(100 %)
1 diff
(99.9 %id)
AI912627 carcinoid, lung .k 3151 to 3740 590 to 1       590/590
(100 %)
0 diff
(100 %id)
EB387669 eye, optic nerve .k 3152 to 3740 1 to 589   AAA   589/589
(100 %)
1 diff
(99.9 %id)
BE672706 carcinoid, lung .k 3179 to 3740 566 to 5       562/566
(99 %)
0 diff
(100 %id)
AI690009 carcinoid, lung .k 3194 to 3740 547 to 1       547/547
(100 %)
0 diff
(100 %id)
BM729941 insulinoma, Pancreas .k 3194 to 3754 579 to 19     Submitted on the opposite strand 561/579
(96 %)
0 diff
(100 %id)
AW069307 bone marrow stroma .k 3199 to 3740 576 to 28   AAA   549/549
(100 %)
7 diff
(98.8 %id)
DB326803 brain .k 3202 to 3741 541 to 1       541/541
(100 %)
1 diff
(99.9 %id)
BF196733 brain, glioblastoma (pooled) .k 3203 to 3740 536 to 2       535/536
(99 %)
0 diff
(100 %id)
AW270024 lung, two pooled squamous cell carcinomas .k 3204 to 3740 539 to 3       537/539
(99 %)
0 diff
(100 %id)
BF515906   .k 3204 to 3750 564 to 18   AAA   547/547
(100 %)
1 diff
(99.9 %id)
BP423028 small intestine .k 3210 to 3740 532 to 1       532/532
(100 %)
1 diff
(99.9 %id)
BM730007 insulinoma, Pancreas .k 3214 to 3754 559 to 19     Submitted on the opposite strand 541/559
(96 %)
0 diff
(100 %id)
AI127855 uterus .k 3250 to 3740 491 to 1       491/491
(100 %)
0 diff
(100 %id)
AW516023 lymph node, lymphoma, follicular mixed small and largecell .k 3250 to 3740 493 to 3       491/493
(99 %)
0 diff
(100 %id)
BF115725 carcinoid, lung .k 3250 to 3738 494 to 6       489/494
(98 %)
0 diff
(100 %id)
AI658590 Prostate .k 3254 to 3743 496 to 7       490/496
(98 %)
0 diff
(100 %id)
AW014566   .k 3258 to 3740 500 to 18   AAA   483/483
(100 %)
0 diff
(100 %id)
AI147910 uterus .k 3266 to 3740 476 to 2       475/476
(99 %)
0 diff
(100 %id)
AI635220 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .k 3267 to 3740 490 to 17   AAA   474/474
(100 %)
1 diff
(99.8 %id)
BF590244 pooled .k 3280 to 3729 451 to 1       451/451
(100 %)
10 diff
(97.8 %id)
AA044820 uterus .k 3287 to 3740 462 to 9       454/462
(98 %)
0 diff
(100 %id)
AI299728 carcinoid, lung .k 3287 to 3738 453 to 2       452/453
(99 %)
0 diff
(100 %id)
AI580899   .k 3293 to 3742 458 to 7       452/458
(98 %)
0 diff
(100 %id)
BM670088 eye, fetal eyes .k 3305 to 3740 453 to 18   fully sequenced, AAA   436/436
(100 %)
0 diff
(100 %id)
CK823921 insulinoma, Pancreas .k 3309 to 3754 464 to 19     Submitted on the opposite strand 446/464
(96 %)
0 diff
(100 %id)
AW338344 adenocarcinoma, Pancreas .k 3314 to 3742 435 to 7       429/435
(98 %)
0 diff
(100 %id)
AI912815 Kidney .k 3319 to 3740 423 to 2       422/423
(99 %)
0 diff
(100 %id)
AI766422 Kidney .k 3328 to 3740 432 to 20   AAA   413/413
(100 %)
1 diff
(99.8 %id)
AI243430 pooled .k 3344 to 3740 400 to 4       397/400
(99 %)
0 diff
(100 %id)
BI055068 placenta_normal .k 3350 to 3568 230 to 14       217/245
(88 %)
10 diff
(96.0 %id)
AA663968 lung .k 3351 to 3740 403 to 14   AAA   390/390
(100 %)
0 diff
(100 %id)
AI381583 B-cell, chronic lymphotic leukemia .k 3362 to 3738 381 to 5       377/381
(98 %)
0 diff
(100 %id)
BG261042 bladder, transitional cell papilloma, cell line .k 3384 to 3740 1 to 356   AAA   356/356
(100 %)
1 diff
(99.8 %id)
R66960 placenta .k 3389 to 3740 367 to 2       366/367
(99 %)
0 diff
(100 %id)
BF436178 pooled .k 3389 to 3735 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
D62607   .k 3417 to 3738 1 to 322       322/322
(100 %)
0 diff
(100 %id)
AI865951 adenocarcinoma, Pancreas .k 3426 to 3740 319 to 2       318/319
(99 %)
0 diff
(100 %id)
BE855668 brain, glioblastoma (pooled) .k 3438 to 3740 304 to 2       303/305
(99 %)
0 diff
(100 %id)
C21371   .k 3453 to 3750 1 to 298       298/298
(100 %)
0 diff
(100 %id)
R34572 placenta .k 3462 to 3740 287 to 1       287/293
(97 %)
14 diff
(95.3 %id)
AI581949 colon .k 3484 to 3750 268 to 1       268/268
(100 %)
1 diff
(99.7 %id)
AL046273 testis .k 3497 to 3742 1 to 246       246/322
(76 %)
4 diff
(98.8 %id)
AI567900 adenocarcinoma, Pancreas .k 3536 to 3740 206 to 2       205/206
(99 %)
0 diff
(100 %id)
N62778 multiple sclerosis lesions .k 3563 to 3738 176 to 1       176/183
(96 %)
0 diff
(100 %id)
BE045929 pooled germ cell tumors .k 3602 to 3739 138 to 1       138/138
(100 %)
0 diff
(100 %id)
FN067608 breast carcinoma .k 3638 to 3707 67 to 1     Submitted on the opposite strand 67/67
(100 %)
3 diff
(95.6 %id)
FN055807 breast carcinoma .k 3643 to 3739 1 to 97       97/99
(97 %)
1 diff
(99.0 %id)
AI439887 lymph node, lymphoma, follicular mixed small and largecell .k 3647 to 3737 104 to 14       91/104
(87 %)
0 diff
(100 %id)
AW591906 lymph node, lymphoma, follicular mixed small and largecell .k 3670 to 3738 69 to 1       69/69
(100 %)
0 diff
(100 %id)
AL712853 human skeletal muscle .l 1 to 479 1 to 478   tiling clone,   478/478
(100 %)
7 diff
(98.6 %id)
DA124683 cerebellum .l 370 to 904 2 to 536   tiling clone, capped   535/535
(100 %)
1 diff
(99.9 %id)
DA092510 cerebellum .l 489 to 1071 2 to 584   capped   583/585
(99 %)
2 diff
(99.7 %id)
DA238940 brain .l 575 to 1166 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA408533 thalamus .l 838 to 1392 2 to 556   tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DB144601 thymus .l 950 to 1487 2 to 538   capped   537/537
(100 %)
6 diff
(98.9 %id)
DA951085 Spleen .l 1196 to 1750 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA374951 thalamus .l 1213 to 1774 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
AA769406 germinal center B cell .l 1223 to 1647 19 to 442     Submitted on the opposite strand 424/442
(95 %)
6 diff
(98.7 %id)
BF758239 colon .l 1293 to 1548 256 to 1     Submitted on the opposite strand 256/259
(98 %)
11 diff
(95.8 %id)
BX482435   .l 1411 to 1790 1 to 380       380/380
(100 %)
5 diff
(98.7 %id)
DA535198 heart .l 1529 to 2092 2 to 565   tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
DB463702 hippocampus .l 1562 to 1992 1 to 434       434/436
(99 %)
8 diff
(98.2 %id)
DB471563 hippocampus .l 1562 to 2061 1 to 501       501/501
(100 %)
9 diff
(98.3 %id)
N85801   .l 1647 to 1846 1 to 199   tiling clone,   199/199
(100 %)
2 diff
(99.0 %id)
DA955268 Spleen .l 1684 to 2258 2 to 576   tiling clone, capped   575/575
(100 %)
3 diff
(99.5 %id)
DA301267 hippocampus .l 1846 to 2417 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
AK056744 placenta .l 1858 to 4346 1 to 2485   tiling clone, available from FLJ,   2485/2485
(100 %)
3 diff
(99.9 %id)
DA836236 placenta .l 1859 to 2387 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
CA395594 eye, RPE/choroid .l 2000 to 2648 1 to 649       649/649
(100 %)
1 diff
(99.9 %id)
CN282969 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .l 2095 to 2792 1 to 702       702/702
(100 %)
4 diff
(99.5 %id)
BM721486 eye, fetal eye .l 2206 to 2652 1 to 447       447/457
(97 %)
1 diff
(99.8 %id)
DA080075 cerebellum .l 2341 to 2912 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BG926590 cartilage .l 2383 to 3012 86 to 711       626/643
(97 %)
6 diff
(99.1 %id)
AA319622 adrenal gland .l 2723 to 3040 1 to 320       320/320
(100 %)
4 diff
(98.8 %id)
AA346515 heart .l 2781 to 3163 1 to 382       382/385
(99 %)
4 diff
(99.0 %id)
AA404391   .l 2796 to 3155 1 to 360       360/360
(100 %)
0 diff
(100 %id)
BF897739 marrow .l 2869 to 3289 22 to 440       419/440
(95 %)
6 diff
(98.7 %id)
DB113239 thymus .l 2913 to 3491 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
AW936345 denis_drash .l 3020 to 3694 679 to 10     Submitted on the opposite strand 670/686
(97 %)
0 diff
(100 %id)
BG547494 lung .l 3062 to 3829 1 to 775       775/805
(96 %)
27 diff
(96.7 %id)
BF791337 muscle (skeletal) .l 3430 to 4131 1 to 693       693/859
(80 %)
17 diff
(98.1 %id)
BQ429095 testis .l 3489 to 3949 1 to 469       469/944
(49 %)
15 diff
(98.5 %id)
BQ329396 lung_normal .l 3612 to 4155 547 to 5       543/561
(96 %)
0 diff
(100 %id)
CR748098   .l 3759 to 4346 1 to 586   AAA   586/586
(100 %)
1 diff
(99.9 %id)
BM677127 eye, fetal eye .l 3774 to 4364 590 to 1       590/590
(100 %)
2 diff
(99.7 %id)
AA454072.
matches multiple genes
  .l 3779 to 4038 1 to 258     also hits gene choygy 258/258
(100 %)
1 diff
(99.7 %id)
AI884542 serous papillary carcinoma, high grade, 2pooled tumors, uterus .l 3797 to 4346 550 to 1       550/550
(100 %)
0 diff
(100 %id)
DB328231 placenta .l 3804 to 4346 544 to 1       544/544
(100 %)
1 diff
(99.9 %id)
AW979298   .l 3805 to 4369 68 to 633   tiling clone,   566/650
(87 %)
8 diff
(98.8 %id)
DB298399 cerebellum .l 3810 to 4346 537 to 1       537/537
(100 %)
2 diff
(99.7 %id)
AA837685 ovary .l 3821 to 4254 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
AA847410 ovary .l 3821 to 4047 1 to 227       227/227
(100 %)
0 diff
(100 %id)
DB333763 Spleen .l 3852 to 4346 496 to 1       496/496
(100 %)
1 diff
(99.8 %id)
DB540297 hippocampus .l 3868 to 4346 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
AW071090 thymus, pooled .l 3892 to 4350 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
AA995047 breast .l 3906 to 4349 444 to 1       444/444
(100 %)
0 diff
(100 %id)
DB529689 hippocampus .l 3931 to 4346 1 to 416     Submitted on the opposite strand 416/416
(100 %)
0 diff
(100 %id)
AI028039 B-cell, chronic lymphotic leukemia .l 3933 to 4348 416 to 1       416/416
(100 %)
0 diff
(100 %id)
BX111531 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .l 3953 to 4360 408 to 1     Submitted on the opposite strand 408/422
(96 %)
1 diff
(99.8 %id)
AI559187 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .l 3953 to 4351 399 to 1       399/424
(94 %)
0 diff
(100 %id)
AA522650 metastatic prostate bone lesion .l 3970 to 4346 1 to 377   AAA   377/377
(100 %)
5 diff
(98.7 %id)
AA828371 germinal center B cell .l 3980 to 4366 403 to 17   AAA   387/388
(99 %)
0 diff
(100 %id)
BE671416 carcinoid, lung .l 4050 to 4335 1 to 286     Submitted on the opposite strand 286/286
(100 %)
1 diff
(99.7 %id)
AA404384   .l 4113 to 4349 237 to 1       237/237
(100 %)
2 diff
(99.2 %id)
DA397538 thalamus .l 4119 to 4702 2 to 583   tiling clone, capped   582/582
(100 %)
3 diff
(99.5 %id)
AA904539 pooled .l 4135 to 4349 215 to 1       215/215
(100 %)
1 diff
(99.6 %id)
DA295126 hippocampus .l 4264 to 4830 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
CV406884 uterus_tumor .l 4345 to 4681 338 to 8   tiling clone, Submitted on the opposite strand 331/352
(94 %)
0 diff
(100 %id)
DA821255 pericardium .l 4435 to 5000 2 to 566 exact tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
BF378741 uterus .l 4563 to 4978 11 to 426 V13A K46R     416/426
(97 %)
12 diff
(97.2 %id)
BM549531 melanotic melanoma, skin .m-u 1 to 786 25 to 813 exact tiling clone, AAA   789/962
(82 %)
24 diff
(97.6 %id)
AW898056 nervous_normal .n-u 1 to 666 1 to 664 exact tiling clone,   664/667
(99 %)
18 diff
(97.4 %id)
AW893834 nervous_normal .o-u 1 to 292 1 to 290   tiling clone,   290/290
(100 %)
12 diff
(95.9 %id)
AW893728 nervous_normal .o-u 61 to 544 1 to 486 N25I tiling clone,   486/492
(98 %)
13 diff
(97.4 %id)
BQ025533 placenta .p-u 1 to 303 338 to 36   tiling clone, AAA   303/328
(92 %)
0 diff
(100 %id)
BE245459 leukopheresis .p-u 109 to 540 432 to 2 exact tiling clone,   431/432
(99 %)
0 diff
(100 %id)
AW392964 stomach .r-u 1 to 416 417 to 2 exact tiling clone,   416/631
(65 %)
0 diff
(100 %id)
AL589505 human spinal cord .s-u 1 to 379 27 to 404 exact tiling clone,   378/407
(92 %)
2 diff
(99.6 %id)
GD153488   .t-u 1 to 271 1 to 274 V2G G6R M7X E8R I9D ... tiling clone,   274/276
(99 %)
10 diff
(96.4 %id)
BE937076 stomach_normal Gene VPS13C, variant not shown              
BE937085 stomach_normal Gene VPS13C, variant not shown              
AV725104 hypothalamus Gene VPS13C, variant not shown       AAA Suspected internal deletion, this clone was ignored    
R14231 whole brain Gene VPS13C, variant not shown         This clone was ignored    
R40650 whole brain Gene VPS13C, variant not shown       AAA This clone was ignored    
AI910561 pooled Gene VPS13C, variant not shown         This clone was ignored    
AI910553 pooled Gene VPS13C, variant not shown         This clone was ignored    
DA936515 Spleen Gene VPS13C, variant not shown       capped This clone was ignored    
DB153938 thymus Gene VPS13C, variant not shown       capped This clone was ignored    
DB346331 thymus Gene VPS13C, variant not shown         This clone was ignored    
DB197416 trachea Gene VPS13C, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o-u, .p-u, .q-u, .r-u, .s-u, .t-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC