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Gene BEST1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
323 supporting clones for gene BEST1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001139443.1   .a 1 to 2832 1 to 2832 exact RefSeq, AAA   2832/2832
(100 %)
0 diff
(100 %id)
BC041664 Brain, adult, 6 pooled whole brains .a 487 to 2832 1 to 2346 A297V tiling clone, available from MGC, AAA   2346/2346
(100 %)
2 diff
(100.0 %id)
BE410951 choriocarcinoma, placenta .a 1541 to 2291 1 to 735       735/773
(95 %)
29 diff
(96.3 %id)
BE385296 melanotic melanoma, skin .a 1556 to 2147 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
CA395098 eye, RPE/choroid .a 1640 to 2184 1 to 545   tiling clone,   545/545
(100 %)
0 diff
(100 %id)
BP382328 adipose tissue .a 1845 to 2469 1 to 624       624/624
(100 %)
5 diff
(99.2 %id)
DA135960 alzheimer cortex .a 1932 to 2467 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
AI917923 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2089 to 2510 1 to 422     Submitted on the opposite strand 422/422
(100 %)
0 diff
(100 %id)
DA380263 thalamus .b 1 to 503 2 to 504   tiling clone, capped   503/503
(100 %)
2 diff
(99.7 %id)
DB276901 uterus .b 3 to 543 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DC318047 amygdala .b 6 to 589 1 to 584   tiling clone,   584/584
(100 %)
2 diff
(99.7 %id)
DA804357 brain .b 17 to 559 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DC330581 hippocampus .b 19 to 592 1 to 574       574/574
(100 %)
3 diff
(99.5 %id)
NM_004183.3   .b 110 to 2788 1 to 2679   RefSeq, AAA   2679/2679
(100 %)
0 diff
(100 %id)
DC316008 amygdala .b 577 to 1125 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC316532 amygdala .b 577 to 1141 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC322840 brain .b 577 to 1134 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
DC325966 caudate nucleus .b 577 to 1138 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC331915 hippocampus .b 577 to 1137 1 to 561       561/561
(100 %)
0 diff
(100 %id)
DC343473 thalamus .b 579 to 1111 1 to 533       533/533
(100 %)
0 diff
(100 %id)
DC337351 substantia nigra .b 581 to 1063 1 to 483       483/483
(100 %)
0 diff
(100 %id)
DC317650 amygdala .b 582 to 1132 1 to 551       551/551
(100 %)
0 diff
(100 %id)
AF057169   .b 586 to 2786 1 to 2201   tiling clone,   2201/2210
(99 %)
2 diff
(100.0 %id)
BI480798 Native Retinal Pigment Epithelium sheets, retina .b 595 to 1245 12 to 661       650/666
(97 %)
8 diff
(98.8 %id)
CA392869 eye, RPE/choroid .b 596 to 971 1 to 376       376/376
(100 %)
1 diff
(99.8 %id)
CA389968 eye, RPE/choroid .b 597 to 1235 1 to 639       639/639
(100 %)
0 diff
(100 %id)
AA326727 brain, cerebellum .b 602 to 745 1 to 144       144/144
(100 %)
2 diff
(98.7 %id)
AF073501 retinal pigment epithelium .b 602 to 2772 1 to 2171       2171/2171
(100 %)
1 diff
(100.0 %id)
DA405925 thalamus .b 606 to 1276 2 to 673   capped   672/672
(100 %)
2 diff
(99.8 %id)
CA391418 eye, RPE/choroid .b 621 to 1117 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
BM707649 eye, RPE and Choroid .b 631 to 1152 1 to 522       522/522
(100 %)
0 diff
(100 %id)
AY515704   .b 690 to 2447 1 to 1758       1758/1758
(100 %)
0 diff
(100 %id)
CV024947 mixed .b 870 to 1360 1 to 491       491/491
(100 %)
0 diff
(100 %id)
TI_1948135259   .b 870 to 1564 130 to 831       702/1473
(47 %)
20 diff
(98.7 %id)
DA674167   .b 907 to 1493 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
CO396179 Chondrosarcoma Lung Metastasis cell lines, lung .b 1002 to 1726 8 to 724       717/756
(94 %)
27 diff
(96.5 %id)
BQ879880 dorsal root ganglia .b 1030 to 1909 26 to 918       893/963
(92 %)
35 diff
(96.4 %id)
CD518675 White Matter .b 1155 to 2002 1 to 858       858/881
(97 %)
16 diff
(98.2 %id)
BQ345758 nervous_tumor .b 1213 to 1509 1 to 300       300/300
(100 %)
12 diff
(96.0 %id)
BM685501 eye, RPE and Choroid .b 1351 to 1869 7 to 526       520/526
(98 %)
1 diff
(99.9 %id)
BG013943 placenta_normal .b 1466 to 1920 1 to 455       455/455
(100 %)
3 diff
(99.4 %id)
AA318352 retina .b 1558 to 1861 1 to 305       305/305
(100 %)
2 diff
(99.4 %id)
BM691456 eye, RPE and Choroid .b 1605 to 2133 8 to 536       529/537
(98 %)
8 diff
(98.6 %id)
TI_1948135260   .b 1627 to 2433 949 to 142       808/1309
(61 %)
8 diff
(99.4 %id)
TI_1948135262   .b 1635 to 2433 937 to 141       797/1229
(64 %)
15 diff
(98.8 %id)
TI_1948134724   .b 1636 to 2433 939 to 142       798/1263
(63 %)
3 diff
(99.8 %id)
TI_1948135261   .b 1636 to 2433 938 to 141       798/1304
(61 %)
15 diff
(98.9 %id)
BY800357 eye .b 1637 to 2267 1 to 631       631/631
(100 %)
0 diff
(100 %id)
EL955651 eyeball .b 1720 to 2277 1 to 558       558/558
(100 %)
4 diff
(99.3 %id)
BM694530 eye, RPE and Choroid .b 1762 to 2130 1 to 369       369/371
(99 %)
2 diff
(99.5 %id)
TI_151769250   .b 1814 to 2400 104 to 690       587/1181
(49 %)
36 diff
(97.0 %id)
AA307119 colon .b 1820 to 2288 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
EL949461 eyeball .b 1834 to 2354 1 to 520       520/520
(100 %)
6 diff
(98.9 %id)
BE275846 melanotic melanoma, skin .b 1854 to 2288 1 to 441       441/766
(57 %)
9 diff
(98.9 %id)
BX095540 melanocyte .b 1918 to 2612 1 to 696   AAA   696/696
(100 %)
1 diff
(99.9 %id)
N31453 melanocyte .b 1924 to 2357 1 to 438   fully sequenced,   438/438
(100 %)
4 diff
(99.1 %id)
BU731149.
matches multiple genes
eye, RPE and Choroid .b 1975 to 2607 651 to 19   AAA also hits gene MRPL24 633/633
(100 %)
2 diff
(99.7 %id)
BE086052 breast .b 2021 to 2261 8 to 246       239/253
(94 %)
8 diff
(96.9 %id)
BQ309377 breast .b 2071 to 2318 256 to 11       246/273
(90 %)
0 diff
(100 %id)
BQ309425 breast .b 2071 to 2318 256 to 11       246/273
(90 %)
0 diff
(100 %id)
EL948828 eyeball .b 2099 to 2609 1 to 511       511/511
(100 %)
3 diff
(99.5 %id)
BM932117 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2132 to 2607 1 to 476   AAA   476/476
(100 %)
0 diff
(100 %id)
BQ309349 breast .b 2134 to 2340 8 to 211       204/211
(96 %)
6 diff
(97.2 %id)
BQ309410 breast .b 2134 to 2340 8 to 211       204/211
(96 %)
6 diff
(97.2 %id)
BM707948 eye, RPE and Choroid .b 2141 to 2725 1 to 585       585/585
(100 %)
4 diff
(99.4 %id)
BU730894 eye, RPE and Choroid .b 2146 to 2786 659 to 19   AAA   641/641
(100 %)
3 diff
(99.6 %id)
BM662514 eye, RPE and Choroid .b 2147 to 2607 479 to 18   AAA   462/464
(99 %)
7 diff
(98.5 %id)
BU733195 eye, RPE and Choroid .b 2179 to 2607 447 to 19   AAA   429/430
(99 %)
4 diff
(99.1 %id)
AA317489 retina .b 2203 to 2472 1 to 271       271/271
(100 %)
4 diff
(98.6 %id)
BM663028 eye, RPE and Choroid .b 2215 to 2786 589 to 18   AAA   572/575
(99 %)
4 diff
(99.4 %id)
AI208843   .b 2229 to 2608 381 to 2       380/381
(99 %)
0 diff
(100 %id)
EL946586 eyeball .b 2265 to 2787 40 to 562       523/564
(92 %)
9 diff
(98.5 %id)
AA991578 breast .b 2310 to 2607 297 to 1       297/297
(100 %)
2 diff
(99.4 %id)
AI190190 heart .b 2315 to 2787 474 to 2       473/474
(99 %)
0 diff
(100 %id)
N25339 melanocyte .b 2327 to 2612 284 to 1   fully sequenced,   284/284
(100 %)
1 diff
(99.7 %id)
EL951835 eyeball .b 2332 to 2785 34 to 485   AAA   452/485
(93 %)
6 diff
(98.8 %id)
BM718146 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2332 to 2751 1 to 419       419/419
(100 %)
1 diff
(99.8 %id)
EL949576 eyeball .b 2357 to 2788 1 to 432   tiling clone, AAA   432/432
(100 %)
4 diff
(99.1 %id)
AA228015 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2612 to 2784 173 to 1       173/173
(100 %)
2 diff
(98.9 %id)
DA743280   .c 1 to 529 2 to 529   tiling clone, capped   528/528
(100 %)
3 diff
(99.5 %id)
DA325325 hippocampus .c 16 to 471 2 to 457   capped   456/456
(100 %)
1 diff
(99.8 %id)
DA327128 hippocampus .c 16 to 471 2 to 457   tiling clone, capped   456/456
(100 %)
0 diff
(100 %id)
DA721745   .c 20 to 320 2 to 302   capped   301/301
(100 %)
0 diff
(100 %id)
AL043426.
matches multiple genes
testis .c 36 to 279 1 to 245     also hits gene jysno 245/250
(98 %)
4 diff
(98.4 %id)
AK309076 hippocampus .c 545 to 1402 1 to 858   tiling clone,   858/858
(100 %)
0 diff
(100 %id)
DC319298 brain .c 545 to 1105 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
DC335260 hippocampus .c 545 to 1119 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DC321866 brain .c 690 to 1223 1 to 535       535/535
(100 %)
4 diff
(99.3 %id)
DC321867 brain .c 690 to 1160 1 to 471       471/471
(100 %)
3 diff
(99.4 %id)
TI_154197051   .c 1144 to 1935 97 to 885   tiling clone,   789/1017
(77 %)
12 diff
(98.9 %id)
TI_154196667   .c 1145 to 2070 8 to 925   tiling clone, AAA   918/1058
(86 %)
19 diff
(98.3 %id)
CA397981 eye, RPE/choroid .c 2006 to 2641 1 to 636   tiling clone, Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 636/636
(100 %)
2 diff
(99.7 %id)
DC425866 brain .c 2272 to 2693 425 to 1   tiling clone,   425/425
(100 %)
4 diff
(99.1 %id)
BU657324 blood .c 2759 to 3303 1 to 545   tiling clone,   545/545
(100 %)
9 diff
(98.4 %id)
C18742 placenta .c 2827 to 3261 5 to 432       428/486
(88 %)
6 diff
(98.8 %id)
AJ239398 retinal pigment epithelium .c 2870 to 3228 1 to 365       365/365
(100 %)
9 diff
(97.6 %id)
BI031472 marrow .c 2881 to 3308 1 to 426       426/434
(98 %)
12 diff
(97.3 %id)
BI031468 marrow .c 2883 to 3308 1 to 424       424/432
(98 %)
13 diff
(97.0 %id)
BQ185946 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2937 to 3393 1 to 457   tiling clone, fully sequenced, AAA   457/457
(100 %)
0 diff
(100 %id)
AI074304 senescent fibroblast .c 3009 to 3424 421 to 6       416/421
(98 %)
0 diff
(100 %id)
CA397980 eye, RPE/choroid .c 3060 to 3672 629 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 613/613
(100 %)
0 diff
(100 %id)
BI480625 Native Retinal Pigment Epithelium sheets, retina .c 3092 to 3417 12 to 337       326/347
(93 %)
2 diff
(99.5 %id)
BQ184248 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3150 to 3393 262 to 19   fully sequenced, AAA   244/244
(100 %)
0 diff
(100 %id)
DB324834   .c 3156 to 3672 517 to 1       517/517
(100 %)
2 diff
(99.7 %id)
AK295998 subthalamic nucleus .d 1 to 1814 1 to 1814 exact tiling clone,   1814/1814
(100 %)
2 diff
(99.9 %id)
BC015220 Lung, large cell carcinoma .e 1 to 2410 1 to 2410 exact tiling clone, available from MGC, AAA   2410/2410
(100 %)
1 diff
(100.0 %id)
DA358179 subthalamic nucleus .e 468 to 1029 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA265537 caudate nucleus .e 469 to 1031 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DC335531 hippocampus .e 470 to 1061 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DA289793 hippocampus .e 471 to 1056 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA388746 thalamus .e 471 to 1063 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA263511 caudate nucleus .e 473 to 986 2 to 515   capped   514/514
(100 %)
1 diff
(99.9 %id)
BI756228 brain .e 487 to 1101 1 to 618       618/735
(84 %)
10 diff
(98.7 %id)
TI_57216600   .e 487 to 1101 30 to 647       618/764
(80 %)
16 diff
(98.0 %id)
DB031720 testis .e 497 to 1073 2 to 579   capped   576/578
(99 %)
1 diff
(99.9 %id)
TI_1948133635   .e 573 to 1405 127 to 959   AAA   833/1294
(64 %)
23 diff
(98.3 %id)
TI_1948133636   .e 573 to 1411 126 to 963       838/1432
(58 %)
10 diff
(99.4 %id)
TI_1948133637   .e 573 to 1411 129 to 965       837/1318
(63 %)
31 diff
(97.7 %id)
TI_1948134172   .e 573 to 1596 129 to 1135       1008/1334
(75 %)
48 diff
(96.5 %id)
TI_1948134173   .e 573 to 1411 131 to 969       839/1416
(59 %)
11 diff
(99.3 %id)
TI_1948134174   .e 573 to 1416 126 to 968       843/1329
(63 %)
30 diff
(97.8 %id)
TI_1948134720   .e 573 to 1603 132 to 1156       1025/1363
(75 %)
35 diff
(97.5 %id)
TI_1948134721   .e 573 to 1409 132 to 965       834/1414
(58 %)
23 diff
(98.4 %id)
TI_1948134722   .e 573 to 1420 130 to 978       849/1318
(64 %)
27 diff
(98.0 %id)
TI_1948135257   .e 573 to 1409 131 to 965       835/1387
(60 %)
20 diff
(98.6 %id)
TI_1948135258   .e 573 to 1409 128 to 959       832/1468
(56 %)
28 diff
(98.1 %id)
TI_1948133639   .e 1102 to 2055 1098 to 142       957/1283
(74 %)
27 diff
(97.9 %id)
TI_1948134175   .e 1102 to 2055 1090 to 140       951/1308
(72 %)
25 diff
(98.1 %id)
TI_1948134176   .e 1103 to 2055 1100 to 142       959/1311
(73 %)
43 diff
(96.8 %id)
TI_1948133640   .e 1105 to 2055 1088 to 141       950/1172
(81 %)
38 diff
(96.8 %id)
TI_1948134177   .e 1106 to 2055 1093 to 141       953/1192
(79 %)
32 diff
(97.4 %id)
TI_1948133638   .e 1136 to 2055 1063 to 141       923/1340
(68 %)
8 diff
(99.5 %id)
TI_1948134725   .e 1142 to 2055 1061 to 141       920/1212
(75 %)
36 diff
(97.1 %id)
TI_1948134723   .e 1143 to 2055 1060 to 141       920/1327
(69 %)
19 diff
(98.6 %id)
DB567237 hypothalamus .e 2236 to 2688 453 to 1   tiling clone,   453/453
(100 %)
0 diff
(100 %id)
DB575629 hypothalamus .e 2361 to 2833 473 to 1       473/486
(97 %)
4 diff
(99.2 %id)
DB558976 hypothalamus .e 2410 to 2834 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
AA974463 2 pooled tumors (clear cell type), Kidney .e 2509 to 2761 1 to 253     Submitted on the opposite strand 253/253
(100 %)
3 diff
(98.9 %id)
AA190479   .e 2510 to 2715 1 to 206     Submitted on the opposite strand 206/206
(100 %)
2 diff
(99.1 %id)
BP386939 pancreatic islet .e 2511 to 2812 302 to 1       302/306
(98 %)
1 diff
(99.7 %id)
AA190702   .e 2511 to 2841 1 to 334     Submitted on the opposite strand 334/374
(89 %)
5 diff
(98.7 %id)
AA513469 colon .e 2511 to 2750 1 to 240     Submitted on the opposite strand 240/245
(97 %)
1 diff
(99.6 %id)
AA729322 pooled germ cell tumors .e 2511 to 2821 1 to 311     Submitted on the opposite strand 311/311
(100 %)
2 diff
(99.4 %id)
C75517   .e 2512 to 2813 8 to 309       302/309
(97 %)
6 diff
(98.1 %id)
C75570   .e 2512 to 2813 8 to 310       303/310
(97 %)
6 diff
(98.1 %id)
AV656004 corresponding non cancerous liver tissue .e 2512 to 2689 178 to 1       178/211
(84 %)
0 diff
(100 %id)
BP384079 pancreatic islet .e 2512 to 2830 319 to 1       319/324
(98 %)
0 diff
(100 %id)
BP388825 pancreatic islet .e 2512 to 2738 227 to 1       227/230
(98 %)
0 diff
(100 %id)
BP389269 pancreatic islet .e 2512 to 2692 181 to 1       181/189
(95 %)
0 diff
(100 %id)
BP417947 small intestine .e 2512 to 2672 161 to 1       161/164
(98 %)
0 diff
(100 %id)
AA173400   .e 2512 to 2734 234 to 9       226/234
(96 %)
0 diff
(100 %id)
AA182718   .e 2512 to 2783 1 to 279       279/279
(100 %)
9 diff
(96.8 %id)
AA664057 lung .e 2512 to 2774 1 to 262     Submitted on the opposite strand 262/262
(100 %)
5 diff
(98.1 %id)
AA522728 metastatic prostate bone lesion .e 2512 to 2803 7 to 297       291/301
(96 %)
3 diff
(99.1 %id)
AA534167 invasive prostate tumor, Prostate .e 2512 to 2777 21 to 286       266/290
(91 %)
4 diff
(98.7 %id)
AI264690 Kidney .e 2512 to 2766 1 to 255     Submitted on the opposite strand 255/255
(100 %)
0 diff
(100 %id)
AI797966 pooled .e 2512 to 2754 1 to 243     Submitted on the opposite strand 243/243
(100 %)
0 diff
(100 %id)
AW872501 normal epithelium, thyroid .e 2512 to 2762 259 to 9       251/280
(89 %)
0 diff
(100 %id)
CB148126 Liver .e 2512 to 2857 7 to 352       346/354
(97 %)
4 diff
(98.9 %id)
AA335065 esophagus .e 2513 to 2783 1 to 271     Submitted on the opposite strand 271/271
(100 %)
0 diff
(100 %id)
AA341611 Kidney .e 2513 to 2702 1 to 190       190/190
(100 %)
0 diff
(100 %id)
AA372243 epithelium, retina pigmented layer .e 2513 to 2722 1 to 210       210/210
(100 %)
0 diff
(100 %id)
AW969979   .e 2513 to 2827 93 to 406       314/406
(77 %)
9 diff
(97.8 %id)
AU185790 skin .e 2513 to 2817 1 to 305       305/305
(100 %)
1 diff
(99.7 %id)
BG656446 Pancreas, Purified pancreatic islet .e 2513 to 2841 1 to 329       329/359
(91 %)
2 diff
(99.5 %id)
BP391838 pancreatic islet .e 2513 to 2821 309 to 1       309/309
(100 %)
1 diff
(99.7 %id)
DB527285.
matches multiple genes
testis .e 2513 to 2974 462 to 1   tiling clone, also hits gene FTH1 462/462
(100 %)
0 diff
(100 %id)
DB528567 hippocampus .e 2513 to 2881 372 to 2       371/372
(99 %)
0 diff
(100 %id)
DB530987 hippocampus .e 2513 to 2838 365 to 36       330/365
(90 %)
0 diff
(100 %id)
DB534894 hippocampus .e 2513 to 2957 447 to 4       444/447
(99 %)
0 diff
(100 %id)
DB559803 hypothalamus .e 2513 to 2748 237 to 1       237/237
(100 %)
6 diff
(97.5 %id)
BP389246 pancreatic islet .e 2513 to 2721 209 to 1       209/209
(100 %)
0 diff
(100 %id)
AA182719   .e 2513 to 2841 1 to 331       331/351
(94 %)
5 diff
(98.6 %id)
AA729677 pooled germ cell tumors .e 2513 to 2821 1 to 309     Submitted on the opposite strand 309/309
(100 %)
0 diff
(100 %id)
AI749419 aorta .e 2513 to 2792 1 to 280     Submitted on the opposite strand 280/280
(100 %)
10 diff
(96.5 %id)
AA918230 Kidney .e 2514 to 2755 1 to 242     Submitted on the opposite strand 242/242
(100 %)
0 diff
(100 %id)
AA186547.
matches multiple genes
  .e 2515 to 2838 1 to 326     also hits gene PTP4A1 326/370
(88 %)
8 diff
(97.9 %id)
AA533835 normal prostatic epithelial cells, Prostate .e 2515 to 2794 1 to 280       280/280
(100 %)
0 diff
(100 %id)
BG959419 colon .e 2516 to 2796 1 to 279       279/279
(100 %)
9 diff
(96.8 %id)
DB559860 hypothalamus .e 2516 to 2761 242 to 1       242/251
(96 %)
10 diff
(96.1 %id)
AA505491 breast .e 2517 to 2766 1 to 250     Submitted on the opposite strand 250/250
(100 %)
11 diff
(95.6 %id)
BP386573 pancreatic islet .e 2518 to 2830 312 to 1       312/312
(100 %)
1 diff
(99.7 %id)
BP388394 pancreatic islet .e 2518 to 2743 232 to 7       226/232
(97 %)
0 diff
(100 %id)
BP389212 pancreatic islet .e 2518 to 2817 300 to 1       300/300
(100 %)
1 diff
(99.7 %id)
AA853803 Bone, Hip .e 2518 to 2811 8 to 300       293/300
(97 %)
6 diff
(98.0 %id)
AA852830 Bone, Hip .e 2519 to 2813 9 to 303       295/303
(97 %)
6 diff
(98.1 %id)
BP390282 pancreatic islet .e 2520 to 2797 278 to 1       278/278
(100 %)
0 diff
(100 %id)
BP385429 pancreatic islet .e 2520 to 2740 223 to 1       223/223
(100 %)
2 diff
(99.2 %id)
BP385592 pancreatic islet .e 2520 to 2704 185 to 1       185/185
(100 %)
0 diff
(100 %id)
AA064893   .e 2531 to 2622 1 to 94   fully sequenced,   94/94
(100 %)
0 diff
(100 %id)
AI369026 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 2534 to 2807 1 to 274     Submitted on the opposite strand 274/274
(100 %)
0 diff
(100 %id)
AA852092 Bone, Hip .e 2534 to 2830 7 to 302       296/302
(98 %)
1 diff
(99.7 %id)
AI750548 Bone, Hip .e 2536 to 2790 1 to 251       251/251
(100 %)
12 diff
(95.3 %id)
BE834076 ovary .e 2537 to 2811 1 to 275       275/280
(98 %)
3 diff
(99.0 %id)
H88509 cochlea, ear .e 2537 to 2782 1 to 246     Submitted on the opposite strand 246/248
(99 %)
1 diff
(99.6 %id)
AI751418 Bone, Hip .e 2537 to 2808 1 to 272       272/272
(100 %)
4 diff
(98.6 %id)
AW946900 lung_tumor .e 2538 to 2804 10 to 276       267/276
(96 %)
6 diff
(97.9 %id)
H49998 brain .e 2541 to 2813 1 to 273     Submitted on the opposite strand 273/274
(99 %)
3 diff
(99.0 %id)
AA165511   .e 2542 to 2841 1 to 300     Submitted on the opposite strand 300/305
(98 %)
2 diff
(99.4 %id)
AA130405 colon, tumor .e 2543 to 2789 1 to 246     Submitted on the opposite strand 246/246
(100 %)
1 diff
(99.6 %id)
AA853759 Bone, Hip .e 2545 to 2841 1 to 297       297/299
(99 %)
6 diff
(98.0 %id)
BG939172 Bone, Hip .e 2545 to 2803 1 to 259       259/259
(100 %)
7 diff
(97.3 %id)
BP385941 pancreatic islet .e 2546 to 2794 249 to 1       249/249
(100 %)
3 diff
(98.8 %id)
AA359642 lung .e 2549 to 2772 1 to 224       224/227
(98 %)
1 diff
(99.6 %id)
AA974296 pooled germ cell tumors .e 2549 to 2765 1 to 217     Submitted on the opposite strand 217/217
(100 %)
0 diff
(100 %id)
BG938539 Bone, Hip .e 2555 to 2760 9 to 214       206/214
(96 %)
6 diff
(97.2 %id)
AA069264 Pancreas .e 2561 to 2816 1 to 257     Submitted on the opposite strand 257/293
(87 %)
7 diff
(97.7 %id)
DV460031 cochlea, ear .e 2568 to 2770 1 to 203       203/203
(100 %)
5 diff
(97.6 %id)
BF882804 lung_tumor .e 2574 to 2717 20 to 157       138/157
(87 %)
7 diff
(95.6 %id)
H03473 placenta .e 2575 to 2765 1 to 191     Submitted on the opposite strand 191/196
(97 %)
1 diff
(99.5 %id)
DV461616.
matches multiple genes
cochlea, ear .e 2575 to 2662 1 to 88   tiling clone, also hits gene speesporbu 88/88
(100 %)
2 diff
(97.8 %id)
EY123356 intestinal (Lauren) gastric adenocarcinoma, stomach .e 2577 to 2772 1 to 194       194/201
(96 %)
3 diff
(98.6 %id)
DV462670 cochlea, ear .e 2577 to 2767 1 to 191       191/191
(100 %)
0 diff
(100 %id)
DV459570 cochlea, ear .e 2577 to 2770 1 to 194       194/194
(100 %)
0 diff
(100 %id)
DV461956 cochlea, ear .e 2577 to 2824 1 to 248       248/251
(98 %)
1 diff
(99.7 %id)
DV461600 cochlea, ear .e 2577 to 2716 1 to 140       140/140
(100 %)
0 diff
(100 %id)
Z19770   .e 2579 to 2737 1 to 154       154/154
(100 %)
6 diff
(96.2 %id)
BQ365367 placenta_normal .e 2581 to 3033 1 to 455       455/460
(98 %)
21 diff
(95.5 %id)
BE932970 head_neck .e 2584 to 2693 8 to 113       106/113
(93 %)
6 diff
(94.7 %id)
AA065212   .e 2592 to 2833 241 to 1   fully sequenced,   241/241
(100 %)
1 diff
(99.6 %id)
BE162938 head_neck .e 2593 to 2693 24 to 125       102/125
(81 %)
6 diff
(95.2 %id)
BI050818 placenta_normal .e 2610 to 2753 1 to 141       141/141
(100 %)
10 diff
(93.0 %id)
AA219611 brain, neuroepithelial cells .e 2612 to 2772 1 to 162     Submitted on the opposite strand 162/164
(98 %)
2 diff
(98.8 %id)
AW391607 stomach .e 2615 to 2722 15 to 122       108/125
(86 %)
9 diff
(92.8 %id)
BF911668 uterus_tumor .e 2615 to 2927 1 to 312       312/312
(100 %)
2 diff
(99.4 %id)
BI047385 stomach .e 2615 to 2753 32 to 168       137/169
(81 %)
6 diff
(96.5 %id)
BF375425 stomach .e 2619 to 2752 1 to 137       137/138
(99 %)
4 diff
(97.2 %id)
BE832926 ovary .e 2621 to 2827 1 to 205       205/205
(100 %)
4 diff
(98.1 %id)
AW800929 uterus .e 2695 to 2827 11 to 142       132/156
(84 %)
3 diff
(98.1 %id)
BE708909 head_neck .e 2697 to 2804 8 to 115       108/115
(93 %)
6 diff
(94.8 %id)
EC524303 Prostate .e 2699 to 2778 1 to 80       80/94
(85 %)
1 diff
(99.0 %id)
BQ348317 head_neck .e 2728 to 3158 127 to 558       432/558
(77 %)
6 diff
(99.0 %id)
BQ348630 head_neck .e 2728 to 3072 100 to 445       346/445
(77 %)
10 diff
(97.8 %id)
CV341294 head_neck .e 2728 to 3157 128 to 558   tiling clone,   431/558
(77 %)
6 diff
(99.0 %id)
EC562721 Prostate .e 2734 to 2830 1 to 97       97/98
(98 %)
1 diff
(99.0 %id)
EC518676 Prostate .e 2739 to 2826 1 to 88       88/96
(91 %)
1 diff
(99.0 %id)
AW365842 head_neck .e 2743 to 2913 173 to 343       171/177
(96 %)
0 diff
(100 %id)
BQ327564 kidney_tumor .e 2770 to 3208 1 to 441   tiling clone,   441/441
(100 %)
21 diff
(95.3 %id)
AW365765 head_neck .e 2802 to 3048 1 to 250       250/250
(100 %)
13 diff
(94.8 %id)
EC530052 Prostate .e 2951 to 3042 1 to 91       91/91
(100 %)
1 diff
(99.0 %id)
CV322321 marrow .e 3037 to 3457 1 to 419   tiling clone,   419/420
(99 %)
6 diff
(98.6 %id)
BQ349404 head_neck .e 3266 to 3710 11 to 455   tiling clone,   445/455
(97 %)
6 diff
(98.7 %id)
BQ326125 colon_normal .e 3318 to 3463 1 to 146       146/146
(100 %)
0 diff
(100 %id)
BQ315705 colon .e 3331 to 3496 1 to 166       166/167
(99 %)
4 diff
(97.7 %id)
BQ315712 colon .e 3331 to 3496 1 to 166       166/167
(99 %)
4 diff
(97.7 %id)
BM989851 lung, Lung Focal Fibrosis .e 3365 to 4057 709 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 691/691
(100 %)
5 diff
(99.3 %id)
FN143933 breast carcinoma .e 3485 to 3580 1 to 96       96/96
(100 %)
0 diff
(100 %id)
AW843878 colon_normal .e 3579 to 3849 1 to 271       271/271
(100 %)
0 diff
(100 %id)
BF929715 nervous_tumor .e 3629 to 3814 1 to 186       186/186
(100 %)
0 diff
(100 %id)
DB064469 testis .f 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
AK301392 synovial membrane tissue from rheumatoidarthritis .f 436 to 2312 1 to 1877 exact tiling clone,   1877/1877
(100 %)
3 diff
(99.9 %id)
DC295396 synovial membrane tissue from rheumatioidarthritis .f 436 to 1015 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DC326406 caudate nucleus .f 521 to 1073 1 to 553       553/553
(100 %)
2 diff
(99.7 %id)
AK289681 amygdala .g 1 to 1573 1 to 1573 exact tiling clone,   1573/1573
(100 %)
0 diff
(100 %id)
AF057170   .g 5 to 2408 1 to 2404   tiling clone, AAA   2404/2404
(100 %)
2 diff
(100.0 %id)
BQ345562 nervous_tumor .g 615 to 1126 9 to 525       517/525
(98 %)
18 diff
(96.6 %id)
CD102442 Pooled-Skin .g 966 to 1069 1 to 104       104/116
(89 %)
2 diff
(98.3 %id)
BM685396 eye, RPE and Choroid .g 1098 to 1628 1 to 531       531/531
(100 %)
7 diff
(98.7 %id)
BU726009 eye, RPE and Choroid .g 1755 to 2229 492 to 18   tiling clone, AAA   475/475
(100 %)
3 diff
(99.4 %id)
AK298747   .h 1 to 1829 1 to 1829 S224P tiling clone,   1829/1829
(100 %)
3 diff
(99.9 %id)
DC365218   .h 1 to 572 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
TI_151730538   .h 1713 to 2165 49 to 499     Submitted on the opposite strand 451/1053
(42 %)
3 diff
(99.8 %id)
BQ187559 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 1717 to 2162 446 to 1     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
N41943 melanocyte .h 1755 to 2245 1 to 493       493/494
(99 %)
8 diff
(98.4 %id)
BM707813 eye, RPE and Choroid .h 1821 to 2327 1 to 507   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 507/508
(99 %)
1 diff
(99.9 %id)
EL950814 eyeball .h 1838 to 2403 19 to 584       566/584
(96 %)
6 diff
(99.0 %id)
BG950642 colon .h 1872 to 2514 11 to 650       640/662
(96 %)
16 diff
(97.6 %id)
BQ028631 placenta, Placenta Choriocarcinoma .h 1879 to 2531 17 to 669     Submitted on the opposite strand 653/669
(97 %)
6 diff
(99.2 %id)
EL954327 eyeball .h 1925 to 2373 38 to 491       454/491
(92 %)
6 diff
(98.8 %id)
BI480816 Native Retinal Pigment Epithelium sheets, retina .h 1954 to 2232 11 to 289       279/289
(96 %)
5 diff
(98.3 %id)
EL946760 eyeball .h 1955 to 2523 1 to 568       568/568
(100 %)
4 diff
(99.3 %id)
EL947498 eyeball .h 2013 to 2557 7 to 553       547/561
(97 %)
3 diff
(99.5 %id)
BU629816 cell lines, Chondrosarcoma .h 2133 to 2767 654 to 19   tiling clone, AAA   636/636
(100 %)
2 diff
(99.7 %id)
BI026143 marrow .h 2230 to 2652 428 to 6       423/429
(98 %)
0 diff
(100 %id)
BM697639 eye, fetal eyes .h 2257 to 2770 11 to 523       513/523
(98 %)
6 diff
(98.9 %id)
TI_154099639   .h 2266 to 2947 777 to 94   AAA   684/686
(99 %)
6 diff
(99.2 %id)
CA308356 Alveolar Macrophage, lung .h 2296 to 2946 669 to 19   AAA   651/651
(100 %)
4 diff
(99.4 %id)
CA441116 Fibrosarcoma .h 2300 to 2947 668 to 19   tiling clone, AAA   650/650
(100 %)
3 diff
(99.6 %id)
EL949853 eyeball .h 2333 to 2937 22 to 626       605/626
(96 %)
6 diff
(99.1 %id)
BI026149 marrow .h 2337 to 2625 296 to 6       291/301
(96 %)
0 diff
(100 %id)
BI026159 marrow .h 2456 to 2655 201 to 4       198/201
(98 %)
0 diff
(100 %id)
BI026124 marrow .h 2476 to 2648 173 to 2   tiling clone,   172/175
(98 %)
0 diff
(100 %id)
N33227 melanocyte .h 2510 to 2953 444 to 1   tiling clone,   444/444
(100 %)
6 diff
(98.7 %id)
AK295450 hippocampus .i 1 to 1351 1 to 1351 C337S tiling clone,   1351/1351
(100 %)
2 diff
(99.9 %id)
BP379588 uterus .j 1 to 581 1 to 582   tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
BY796537 eye .j 440 to 1036 1 to 598   tiling clone,   598/598
(100 %)
1 diff
(99.9 %id)
BG001007 placenta_normal .j 902 to 1194 29 to 322   tiling clone,   294/322
(91 %)
6 diff
(98.2 %id)
AK293701 cerebellum .k 1 to 1263 1 to 1263 exact tiling clone,   1263/1263
(100 %)
1 diff
(100.0 %id)
DC306096 cerebellum .k 1 to 561 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
AK295580 hippocampus .l 1 to 1023 1 to 1023 exact tiling clone,   1023/1023
(100 %)
0 diff
(100 %id)
DC375949 brain .m 1 to 568 8 to 575       575/575
(100 %)
3 diff
(99.5 %id)
DC335208 hippocampus .m 1 to 587 2 to 588       588/588
(100 %)
2 diff
(99.7 %id)
DC336893 substantia nigra .m 1 to 560 2 to 561       561/562
(99 %)
2 diff
(99.7 %id)
DC343483 thalamus .m 1 to 586 2 to 587   tiling clone,   587/587
(100 %)
0 diff
(100 %id)
DC324710 brain .m 4 to 579 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DR002191 fetal brain .m 25 to 831 8 to 814       807/814
(99 %)
9 diff
(98.9 %id)
BE785274 large cell carcinoma, lung .m 72 to 605 1 to 544       544/921
(59 %)
22 diff
(97.7 %id)
BP210661 cerebellum .m 263 to 844 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC326081 caudate nucleus .m 484 to 963 1 to 480       480/480
(100 %)
3 diff
(99.4 %id)
DC322791 brain .m 530 to 1155 1 to 626   tiling clone,   626/626
(100 %)
1 diff
(99.9 %id)
AK294577 amygdala .m 535 to 1662 1 to 1128   tiling clone,   1128/1128
(100 %)
1 diff
(100.0 %id)
DC318747 amygdala .m 535 to 1092 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
CA394717 eye, RPE/choroid .m 562 to 916 1 to 355       355/355
(100 %)
1 diff
(99.8 %id)
DC311449 alzheimer cortex .m 754 to 1031 1 to 278       278/278
(100 %)
0 diff
(100 %id)
DC296863   .m 940 to 1480 1 to 545       545/545
(100 %)
5 diff
(99.1 %id)
AA205892   .m 1376 to 1987 1 to 603   tiling clone,   603/603
(100 %)
23 diff
(96.2 %id)
BG951382 colon .n-u 1 to 576 28 to 595   tiling clone,   568/599
(94 %)
21 diff
(96.5 %id)
BF955281 nervous_normal .o 1 to 449 1 to 451 L49Q P51A S53E S54L V55Q ... tiling clone,   451/472
(95 %)
20 diff
(95.8 %id)
BI481022 Native Retinal Pigment Epithelium sheets, retina .p-u 1 to 275 4 to 281 T3X H18L P19S P20T P21S ... tiling clone,   278/281
(98 %)
12 diff
(95.8 %id)
AB209451 brain Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
AV709170 adrenal gland Gene BEST1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AK295838 hippocampus Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
AW884066 ovary Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BG951790 colon Gene BEST1, variant not shown         This clone was ignored    
DC323448 brain Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BY999125   Gene BEST1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
CV322056 leiomios Gene BEST1, variant not shown         This clone was ignored    
CV424209 colon_ins Gene BEST1, variant not shown         This clone was ignored    
BX488209   Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
EC467534 Prostate Gene BEST1, variant not shown         This clone was ignored    
DB315698 brain Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
DA497227 brain Gene BEST1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB488519 hypothalamus Gene BEST1, variant not shown         This clone was ignored    
DB557847 hypothalamus Gene BEST1, variant not shown         This clone was ignored    
DB561920 hypothalamus Gene BEST1, variant not shown         This clone was ignored    
H13676 placenta Gene BEST1, variant not shown         Submitted on the opposite strand    
AA062728 cornea Gene BEST1, variant not shown         Submitted on the opposite strand    
AA081237   Gene BEST1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
AA179335   Gene BEST1, variant not shown         This clone was ignored    
AA182692   Gene BEST1, variant not shown         This clone was ignored    
AA196551.
matches multiple genes
muscle, skeletal muscle Gene gleyplo, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gleyplo    
AA196551.
matches multiple genes
muscle, skeletal muscle Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gleyplo    
AA196647.
matches multiple genes
muscle, skeletal muscle Gene gleyplo, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gleyplo    
AA196647.
matches multiple genes
muscle, skeletal muscle Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gleyplo    
AA809533 normal prostatic epithelial cells, Prostate Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
AW594705 pooled germ cell tumors Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BM562042 leukocyte Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ436824 melanotic melanoma, skin Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
DC375561 brain Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BM718338 eye, fetal eye Gene BEST1, variant not shown         Suspected internal deletion, this clone was ignored    
BU741926 eye, fetal eye Gene BEST1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI