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Gene VANGL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
129 supporting clones for gene VANGL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC103919 PCR rescued clones .a 1 to 1977 1977 to 1 G137V tiling clone, Submitted on the opposite strand 1977/1977
(100 %)
2 diff
(99.9 %id)
BC103920 PCR rescued clones .a 1 to 1974 1974 to 1 exact tiling clone, Submitted on the opposite strand 1974/1974
(100 %)
1 diff
(100.0 %id)
BX420618 brain, fetal brain .b 1 to 956 1 to 952   tiling clone,   952/1059
(89 %)
20 diff
(98.2 %id)
NM_020335.2   .b 1 to 5355 1 to 5355 exact RefSeq,   5355/5355
(100 %)
3 diff
(100.0 %id)
DR002167 fetal brain .b 32 to 566 8 to 543       536/543
(98 %)
8 diff
(98.6 %id)
DA095859 cerebellum .b 36 to 597 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA724098   .b 36 to 587 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA755404   .b 36 to 517 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
BU162175 eye, retinoblastoma .b 44 to 847 1 to 808   tiling clone,   808/895
(90 %)
10 diff
(98.9 %id)
TI_652740023   .b 110 to 394 292 to 7     Submitted on the opposite strand 286/294
(97 %)
1 diff
(99.7 %id)
AK290981   .b 201 to 2275 1 to 2075 S309F L421P     2075/2075
(100 %)
2 diff
(100.0 %id)
DA708557   .b 202 to 760 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AB033041 brain .b 325 to 5344 1 to 5021 exact tiling clone, available from KIAA,   5021/5021
(100 %)
3 diff
(100.0 %id)
DA721968   .b 367 to 923 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BX452239 brain, fetal brain .b 689 to 1536 13 to 856       844/857
(98 %)
7 diff
(99.2 %id)
CN344231 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 731 to 1338 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BE818442 breast_normal .b 1081 to 1513 443 to 11       433/443
(97 %)
1 diff
(99.8 %id)
T31186 brain .b 1311 to 1590 1 to 280       280/280
(100 %)
0 diff
(100 %id)
BM802294 duodenal adenocarcinoma, cell line, small intestine .b 1879 to 2277 1 to 405       405/979
(41 %)
7 diff
(99.3 %id)
CN344237 embryonic stem cells, cell lines H1, H7, andH9 .b 2153 to 2915 1 to 762       762/762
(100 %)
3 diff
(99.7 %id)
CN344234 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2196 to 2813 1 to 618       618/618
(100 %)
2 diff
(99.7 %id)
BM674975 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2206 to 2834 2 to 631     Submitted on the opposite strand 630/727
(86 %)
6 diff
(99.2 %id)
CX780904 human embryonic stem cells .b 2268 to 3109 26 to 867       842/867
(97 %)
6 diff
(99.4 %id)
T07701   .b 2344 to 2651 1 to 309       309/311
(99 %)
2 diff
(99.4 %id)
CN344235 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2368 to 3082 1 to 715       715/716
(99 %)
1 diff
(99.9 %id)
DR761576 embryonic stem .b 2492 to 3284 1 to 793       793/793
(100 %)
1 diff
(99.9 %id)
CN344232 embryonic stem cells, cell lines H1, H7, andH9 .b 2498 to 3186 1 to 688       688/688
(100 %)
1 diff
(99.9 %id)
CN344230 embryonic stem cells, cell lines H1, H7, andH9 .b 2572 to 2769 1 to 197       197/197
(100 %)
1 diff
(99.5 %id)
CV808301 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 2621 to 3199 1 to 579       579/579
(100 %)
4 diff
(99.4 %id)
FN114506 breast carcinoma .b 2772 to 2856 84 to 1     Submitted on the opposite strand 84/84
(100 %)
1 diff
(98.9 %id)
BM717479 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2782 to 3354 586 to 13     Submitted on the opposite strand 574/640
(89 %)
0 diff
(100 %id)
AL137558 testis .b 2849 to 5348 1 to 2505   tiling clone, available from DKFZ, AAA   2505/2505
(100 %)
5 diff
(99.9 %id)
AW205287   .b 2857 to 3348 492 to 2       491/497
(98 %)
0 diff
(100 %id)
CN344236 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2879 to 3516 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
CN344233 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3018 to 3748 1 to 731       731/731
(100 %)
0 diff
(100 %id)
CX780835 human embryonic stem cells .b 4735 to 5343 635 to 27   AAA   609/609
(100 %)
4 diff
(99.4 %id)
T05322   .c 1 to 349 350 to 1 C8L W9L S10D L16P S17Q ... tiling clone,   350/350
(100 %)
5 diff
(98.6 %id)
DB228814 trachea .d 1 to 579 2 to 580 exact tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
DA490932 brain .e 1 to 580 2 to 582   tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
DA733196   .f-u 1 to 607 2 to 608   tiling clone, capped   607/607
(100 %)
1 diff
(99.9 %id)
AW750724 colon_normal .f-u 163 to 604 457 to 19       439/461
(95 %)
0 diff
(100 %id)
BG682485 skin, squamous cell carcinoma .f-u 176 to 773 55 to 651       597/681
(87 %)
35 diff
(94.9 %id)
AU253547 neuroblastoma .f-u 179 to 829 51 to 700       650/700
(92 %)
6 diff
(99.2 %id)
BQ438129 leiomyosarcoma, uterus .f-u 186 to 859 12 to 689       678/945
(71 %)
32 diff
(96.7 %id)
BE177496 head_neck .f-u 201 to 576 521 to 146     Submitted on the opposite strand 376/521
(72 %)
0 diff
(100 %id)
BF340480 brain, glioblastoma with EGFR amplification .f-u 211 to 812 14 to 616       603/923
(65 %)
8 diff
(99.2 %id)
BM554331 brain, medulla .f-u 219 to 1137 21 to 944       924/1053
(87 %)
23 diff
(97.9 %id)
R35953 whole brain .f-u 227 to 634 1 to 420       420/420
(100 %)
15 diff
(96.5 %id)
BX505270   .f-u 240 to 804 1 to 565       565/565
(100 %)
0 diff
(100 %id)
AA378260 synovial membrane .f-u 285 to 605 1 to 326       326/326
(100 %)
5 diff
(98.5 %id)
AW964137   .f-u 286 to 836 1 to 551       551/676
(81 %)
46 diff
(93.2 %id)
CN421568 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 369 to 810 1 to 442       442/442
(100 %)
2 diff
(99.6 %id)
BG473898 eye, retinoblastoma .f-u 421 to 1045 1 to 625       625/673
(92 %)
21 diff
(96.9 %id)
BE256202 eye, retinoblastoma .f-u 441 to 927 1 to 487   tiling clone,   487/490
(99 %)
2 diff
(99.6 %id)
AW963547   .f-u 559 to 1240 686 to 1     Submitted on the opposite strand 686/686
(100 %)
19 diff
(97.3 %id)
CN421572 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 587 to 1103 1 to 516       516/516
(100 %)
2 diff
(99.7 %id)
CN421571 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 588 to 1045 1 to 458   tiling clone,   458/458
(100 %)
3 diff
(99.4 %id)
AL522187 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .f-u 622 to 1324 1 to 706       706/706
(100 %)
7 diff
(99.1 %id)
BE857655 Prostate .f-u 637 to 959 332 to 7       326/332
(98 %)
0 diff
(100 %id)
AA302981 brain .f-u 705 to 1141 1 to 437       437/438
(99 %)
5 diff
(98.9 %id)
BM722069 eye, fetal eye .f-u 732 to 839 1 to 108       108/108
(100 %)
0 diff
(100 %id)
BM720909 eye, fetal eye .f-u 845 to 1524 1 to 681       681/681
(100 %)
2 diff
(99.8 %id)
BE348554 carcinoid, lung .f-u 945 to 1455 1 to 510   tiling clone, Submitted on the opposite strand 510/510
(100 %)
2 diff
(99.7 %id)
AA298737   .f-u 970 to 1241 272 to 1     Submitted on the opposite strand 272/272
(100 %)
0 diff
(100 %id)
CN421567 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 973 to 1347 374 to 1     Submitted on the opposite strand 374/374
(100 %)
2 diff
(99.5 %id)
CB243283 Human Lung Epithelial cells, lung .f-u 1049 to 1794 1 to 746 P74X P85X K94X   Submitted on the opposite strand 746/749
(99 %)
3 diff
(99.6 %id)
CN421569 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 1106 to 1803 1 to 698 exact     698/698
(100 %)
7 diff
(99.0 %id)
BX284039 skin .f-u 1118 to 1615 1 to 498       498/498
(100 %)
0 diff
(100 %id)
BG697490 skin .f-u 1118 to 2050 1 to 925 exact tiling clone,   925/936
(98 %)
21 diff
(97.8 %id)
TI_151776700   .f-u 1145 to 1769 62 to 692 P74X L75P     631/1100
(57 %)
19 diff
(98.3 %id)
BM717001 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f-u 1145 to 1699 1 to 555 exact fully sequenced,   555/555
(100 %)
0 diff
(100 %id)
AW751281 colon .f-u 1154 to 1432 280 to 2       279/280
(99 %)
0 diff
(100 %id)
CD672728 eye, Iris .f-u 1173 to 1665 1 to 493 S54T C56R     493/493
(100 %)
4 diff
(99.2 %id)
BE925243 amnion_normal .f-u 1183 to 1437 16 to 269       254/269
(94 %)
0 diff
(100 %id)
AI906686 breast .f-u 1264 to 1414 1 to 151       151/151
(100 %)
0 diff
(100 %id)
TI_149278315   .f-u 1268 to 2171 993 to 89 A2L S3V S4I F5P I6H ... AAA   905/1111
(81 %)
28 diff
(97.5 %id)
AI906700 breast .f-u 1276 to 1419 1 to 144       144/159
(90 %)
1 diff
(99.4 %id)
AL522186 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .f-u 1372 to 2164 790 to 1       790/790
(100 %)
18 diff
(97.8 %id)
BF767011 colon_est .f-u 1374 to 1748 10 to 384       375/384
(97 %)
6 diff
(98.5 %id)
BI059854 uterus_tumor .f-u 1390 to 2038 1 to 649       649/649
(100 %)
7 diff
(99.0 %id)
TI_149285058   .f-u 1400 to 2171 861 to 83   AAA   779/1192
(65 %)
19 diff
(98.5 %id)
BF877163 lung_tumor .f-u 1443 to 1777 350 to 12     Submitted on the opposite strand 339/378
(89 %)
0 diff
(100 %id)
BI036588 nervous_tumor .f-u 1457 to 1806 1 to 350       350/350
(100 %)
8 diff
(97.8 %id)
TI_154021760   .f-u 1459 to 2171 801 to 89   AAA   713/713
(100 %)
9 diff
(98.8 %id)
AA456278 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1476 to 1927 1 to 452   fully sequenced,   452/452
(100 %)
1 diff
(99.8 %id)
CA503116 Human Lung Epithelial cells, lung .f-u 1485 to 2171 705 to 19   AAA   687/687
(100 %)
0 diff
(100 %id)
BM678651 eye, fetal eye .f-u 1487 to 2171 702 to 19   AAA   684/684
(100 %)
1 diff
(99.9 %id)
AU253548 neuroblastoma .f-u 1510 to 2177 700 to 38       663/700
(94 %)
0 diff
(100 %id)
CA440197 lung, Metastatic Chondrosarcoma .f-u 1537 to 2172 654 to 19   AAA   636/636
(100 %)
2 diff
(99.7 %id)
BX455595 brain, fetal brain .f-u 1538 to 2172 632 to 4       629/840
(74 %)
0 diff
(100 %id)
H85282 melanocyte .f-u 1552 to 1972 1 to 425       425/425
(100 %)
11 diff
(97.5 %id)
BE550958 carcinoid, lung .f-u 1553 to 2039 1 to 488     Submitted on the opposite strand 488/488
(100 %)
8 diff
(98.4 %id)
BU678398 lung .f-u 1557 to 2171 631 to 19   AAA   613/613
(100 %)
2 diff
(99.7 %id)
BM984610 lung .f-u 1558 to 2171 627 to 19   AAA   609/609
(100 %)
5 diff
(99.2 %id)
BI915129 brain .f-u 1564 to 2171 1 to 613       613/935
(65 %)
9 diff
(99.1 %id)
TI_57239143   .f-u 1564 to 2171 31 to 643   AAA   613/955
(64 %)
9 diff
(99.1 %id)
CA438705 lung, Metastatic Chondrosarcoma .f-u 1578 to 2171 611 to 19   AAA   593/593
(100 %)
2 diff
(99.7 %id)
AA235772 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1588 to 1835 1 to 248   fully sequenced,   248/248
(100 %)
0 diff
(100 %id)
BE674679 B-cell, chronic lymphotic leukemia .f-u 1600 to 2128 533 to 5       529/533
(99 %)
0 diff
(100 %id)
BX337586 Placenta Cot 25-normalized .f-u 1616 to 2171 1 to 556       556/556
(100 %)
0 diff
(100 %id)
BF770539 epid_tumor .f-u 1633 to 2009 509 to 133     Submitted on the opposite strand 377/509
(74 %)
0 diff
(100 %id)
AA379851 skin .f-u 1657 to 1877 1 to 222       222/222
(100 %)
1 diff
(99.6 %id)
AA379863 skin .f-u 1657 to 2050 1 to 393       393/395
(99 %)
4 diff
(99.0 %id)
AW963519   .f-u 1658 to 2160 1 to 500       500/502
(99 %)
18 diff
(96.5 %id)
BM673866 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f-u 1669 to 2171 520 to 19   fully sequenced, AAA   502/502
(100 %)
1 diff
(99.9 %id)
AW881769 ovary .f-u 1674 to 1877 1 to 204       204/206
(99 %)
3 diff
(98.6 %id)
AI937112 anaplastic oligodendroglioma, brain .f-u 1682 to 2172 496 to 6       491/496
(98 %)
0 diff
(100 %id)
BG059541 brain, glioblastoma without EGFR amplification .f-u 1685 to 2180 499 to 4   tiling clone,   496/499
(99 %)
0 diff
(100 %id)
AW043760 pooled .f-u 1687 to 2171 492 to 9       484/492
(98 %)
0 diff
(100 %id)
BF432215 pooled .f-u 1707 to 2178 473 to 3       471/473
(99 %)
7 diff
(98.6 %id)
BF842887 head_neck .f-u 1712 to 1861 153 to 3     Submitted on the opposite strand 151/170
(88 %)
0 diff
(100 %id)
AI742066 pooled .f-u 1718 to 2171 461 to 9       453/461
(98 %)
0 diff
(100 %id)
AI140455 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1727 to 2172 449 to 4       446/449
(99 %)
0 diff
(100 %id)
AI625710 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .f-u 1731 to 2172 447 to 4       444/447
(99 %)
0 diff
(100 %id)
AI250918 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1742 to 2171 436 to 7       430/436
(98 %)
0 diff
(100 %id)
AW264179 brain, three pooled meningiomas .f-u 1743 to 2171 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AW662267 2 pooled high-grade transitional celltumors, genitourinary tract .f-u 1744 to 2171 428 to 1       428/428
(100 %)
0 diff
(100 %id)
AI697392 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f-u 1746 to 2171 437 to 12   AAA   426/426
(100 %)
0 diff
(100 %id)
AI654245 ovary, tumor, 5 pooled (see description) .f-u 1760 to 2172 414 to 2       413/414
(99 %)
0 diff
(100 %id)
AI401401 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1763 to 2171 409 to 1       409/409
(100 %)
0 diff
(100 %id)
AI360408 anaplastic oligodendroglioma, brain .f-u 1770 to 2171 403 to 2       402/403
(99 %)
0 diff
(100 %id)
DB365027   .f-u 1771 to 2178 423 to 16   AAA   408/412
(99 %)
6 diff
(98.6 %id)
AI498004 anaplastic oligodendroglioma, brain .f-u 1815 to 2171 364 to 8       357/364
(98 %)
0 diff
(100 %id)
AA235773 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1818 to 2172 364 to 10   fully sequenced,   355/364
(97 %)
0 diff
(100 %id)
BX373018 Neuroblastoma Cot 50-normalized .f-u 1830 to 2153 339 to 17       323/365
(88 %)
0 diff
(100 %id)
CN421570 embryonic stem cells, cell lines H1, H7, andH9 .f-u 1842 to 2171 1 to 330   AAA   330/330
(100 %)
1 diff
(99.7 %id)
AA688033 normal prostate, Prostate .f-u 1850 to 2178 347 to 19   AAA   329/329
(100 %)
2 diff
(99.4 %id)
AI934671 anaplastic oligodendroglioma, brain .f-u 1852 to 2170 319 to 1       319/319
(100 %)
3 diff
(99.1 %id)
AA350988 brain .f-u 1871 to 2171 302 to 1       302/302
(100 %)
1 diff
(99.7 %id)
AA906345 pooled .f-u 1877 to 2180 308 to 4       305/308
(99 %)
0 diff
(100 %id)
BU742298 eye, fetal eye .f-u 1880 to 2172 310 to 19   AAA   292/292
(100 %)
1 diff
(99.7 %id)
AI801371 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .f-u 1888 to 2180 324 to 33   AAA   292/321
(90 %)
0 diff
(100 %id)
AA454663 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 1897 to 2172 276 to 1   fully sequenced,   276/276
(100 %)
2 diff
(99.3 %id)
R49467 whole brain .f-u 1920 to 2171 264 to 11       254/264
(96 %)
0 diff
(100 %id)
AI146407 brain, glioblastoma (pooled) .f-u 1921 to 2171 261 to 12   AAA   250/250
(100 %)
1 diff
(99.6 %id)
AA922668 pooled germ cell tumors .f-u 1970 to 2171 202 to 1       202/202
(100 %)
0 diff
(100 %id)
BM728624 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene VANGL2, variant not shown         Suspected internal deletion, this clone was ignored    
BF922986 nervous_tumor Gene VANGL2, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI