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Gene USP50TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
18 supporting clones for gene USP50 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_203494.4   .a 1 to 1392 1 to 1392 exact RefSeq,   1392/1392
(100 %)
0 diff
(100 %id)
EB710312 pooled .a 362 to 910 557 to 1   tiling clone,   557/557
(100 %)
26 diff
(95.4 %id)
DN831774 pooled .a 364 to 585 413 to 192     Submitted on the opposite strand 222/413
(53 %)
0 diff
(100 %id)
TI_813709245   .a 394 to 944 1 to 550       463/553
(83 %)
20 diff
(96.4 %id)
DN831775 pooled .a 419 to 940 1 to 521   tiling clone,   434/525
(82 %)
10 diff
(98.1 %id)
DB513975 testis .a 674 to 1389 1 to 712   tiling clone, Submitted on the opposite strand 712/713
(99 %)
11 diff
(98.5 %id)
AI990671 pooled germ cell tumors .a 837 to 1304 469 to 1   tiling clone,   469/477
(98 %)
14 diff
(97.1 %id)
AI990110 pooled germ cell tumors .a 896 to 1391 506 to 14   tiling clone, AAA   493/493
(100 %)
1 diff
(99.8 %id)
DB448810 testis .b 1 to 725 1 to 723   tiling clone,   723/723
(100 %)
10 diff
(98.7 %id)
DB451236 testis .c 1 to 678 1 to 677 K31X P49S Y61I N62H tiling clone,   677/679
(99 %)
12 diff
(98.3 %id)
DB451237 testis .c 1 to 482 1 to 482   tiling clone,   482/482
(100 %)
1 diff
(99.8 %id)
DB571280.
matches multiple genes
hypothalamus .d-u 1 to 698 697 to 3 exact tiling clone, also hits gene USP8 695/697
(99 %)
0 diff
(100 %id)
BE832251 marrow .d-u 32 to 300 13 to 281       269/281
(95 %)
7 diff
(97.6 %id)
BE832280 marrow .d-u 44 to 300 1 to 257       257/257
(100 %)
0 diff
(100 %id)
FN151677 breast carcinoma .d-u 107 to 225 1 to 116       116/116
(100 %)
3 diff
(97.5 %id)
FN148697 breast carcinoma .d-u 130 to 246 1 to 116       116/116
(100 %)
3 diff
(97.5 %id)
AV718662 corresponding non cancerous liver tissue .e 1 to 595 594 to 0 Q4N C5V F7S Q8T Q9R ... tiling clone, Submitted on the opposite strand 594/594
(100 %)
8 diff
(98.7 %id)
AJ583818   Gene USP50, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI