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Gene USP45TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
144 supporting clones for gene USP45 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL516185 brain, neuroblastoma, neuroblastoma cells .a 1 to 853 1 to 853   tiling clone,   853/853
(100 %)
1 diff
(99.9 %id)
BX423987 neuroblastoma .a 1 to 1004 1 to 997   tiling clone,   997/1006
(99 %)
9 diff
(99.2 %id)
NM_001080481.1   .a 1 to 6388 1 to 6388 exact RefSeq,   6388/6388
(100 %)
0 diff
(100 %id)
TI_2016726523   .a 431 to 1553 81 to 1201       1121/1287
(87 %)
25 diff
(98.1 %id)
TI_2016727233   .a 431 to 1539 86 to 1183       1098/1311
(83 %)
23 diff
(98.3 %id)
TI_2016730205   .a 431 to 1615 83 to 1256       1174/1322
(88 %)
26 diff
(98.1 %id)
TI_2016730495   .a 431 to 1466 85 to 1122       1041/1290
(80 %)
28 diff
(97.9 %id)
BC150648 Brain, cerebral cortex, PCR rescued clones .a 434 to 5615 1 to 5182 R521T N778S tiling clone,   5182/5182
(100 %)
8 diff
(99.9 %id)
BC157838 Brain, cerebral cortex, PCR rescued clones .a 434 to 5615 1 to 5182 R521T N778S tiling clone,   5182/5182
(100 %)
5 diff
(100.0 %id)
AA307453 colon .a 523 to 841 1 to 319       319/319
(100 %)
1 diff
(99.7 %id)
AJ583819   .a 534 to 2978 1 to 2445 Q691K tiling clone,   2445/2445
(100 %)
1 diff
(100.0 %id)
CV027512 mixed .a 534 to 1175 1 to 642       642/642
(100 %)
2 diff
(99.7 %id)
EC477550 Prostate .a 636 to 719 89 to 6       84/89
(94 %)
0 diff
(100 %id)
TI_2016726993   .a 872 to 2008 17 to 1139       1123/1302
(86 %)
19 diff
(98.6 %id)
AA446638   .a 1003 to 1339 1 to 335       335/335
(100 %)
5 diff
(98.6 %id)
DA269302 caudate nucleus .a 1117 to 1651 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
AL832030 human skeletal muscle .a 1275 to 6254 1 to 4982   tiling clone, available from DKFZ, AAA   4982/4982
(100 %)
10 diff
(99.8 %id)
TI_2016727469   .a 1379 to 2512 15 to 1141       1128/1310
(86 %)
15 diff
(98.9 %id)
CR593749 Placenta Cot 25-normalized .a 2072 to 3452 1 to 1381   tiling clone,   1381/1381
(100 %)
0 diff
(100 %id)
AL545679 placenta, Placenta Cot 25-normalized .a 2072 to 2539 1 to 468   fully sequenced,   468/468
(100 %)
18 diff
(96.2 %id)
BX396189.
matches multiple genes
Placenta Cot 25-normalized .a 2073 to 3043 1 to 982     also hits gene ZNF85 982/982
(100 %)
25 diff
(97.5 %id)
TI_2016727511   .a 2096 to 3221 13 to 1130       1118/1279
(87 %)
16 diff
(98.8 %id)
TI_2016726907   .a 2099 to 3369 18 to 1273       1256/1349
(93 %)
50 diff
(96.3 %id)
AL571297 placenta, Placenta Cot 25-normalized .a 2498 to 3452 955 to 1   fully sequenced,   955/955
(100 %)
25 diff
(97.4 %id)
TI_2016726909   .a 2551 to 3664 1111 to 5       1107/1322
(83 %)
6 diff
(99.6 %id)
DB541253 hippocampus .a 2709 to 3165 1 to 457     Submitted on the opposite strand 457/459
(99 %)
4 diff
(99.2 %id)
TI_2016728197   .a 2813 to 3911 1092 to 2       1091/1272
(85 %)
19 diff
(98.6 %id)
BQ574196 Chondrosarcoma Grade II, Left Pelvis .a 2860 to 3500 657 to 19   AAA   639/639
(100 %)
5 diff
(99.3 %id)
FN051054 breast carcinoma .a 2976 to 3030 56 to 1     Submitted on the opposite strand 56/56
(100 %)
1 diff
(98.3 %id)
BX093272 metastatic prostate bone lesion .a 2995 to 3206 231 to 20     Submitted on the opposite strand 212/231
(91 %)
0 diff
(100 %id)
CF138230 lymph .a 3014 to 3611 8 to 605       598/605
(98 %)
6 diff
(99.1 %id)
TI_154168122   .a 3014 to 3792 91 to 864       774/783
(98 %)
15 diff
(98.1 %id)
BI964090 Islets of Langerhans, Pancreas .a 3022 to 3449 1 to 428       428/428
(100 %)
2 diff
(99.6 %id)
AA443848   .a 3123 to 3492 384 to 15   AAA   370/370
(100 %)
2 diff
(99.5 %id)
TI_2016728199   .a 3270 to 4364 1081 to 6       1076/1236
(87 %)
0 diff
(100 %id)
TI_2016728193   .a 3337 to 4501 1168 to 12       1157/1281
(90 %)
0 diff
(100 %id)
CA395542 eye, RPE/choroid .a 3572 to 4094 1 to 524       524/529
(99 %)
11 diff
(98.0 %id)
CV570665 cornea, eye .a 3912 to 4542 1 to 631       631/631
(100 %)
1 diff
(99.9 %id)
BP424242 small intestine .a 4016 to 4573 1 to 560     Submitted on the opposite strand 560/560
(100 %)
7 diff
(98.8 %id)
F02770 brain, total brain .a 4107 to 4422 1 to 316     Submitted on the opposite strand 316/316
(100 %)
0 diff
(100 %id)
Z39430 brain, total brain .a 4107 to 4455 1 to 349     Submitted on the opposite strand 349/349
(100 %)
0 diff
(100 %id)
AL037796 brain .a 4190 to 4778 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
AK123299 amygdala .a 4191 to 6368 1 to 2180   tiling clone, available from FLJ,   2180/2180
(100 %)
10 diff
(99.6 %id)
DA178194 amygdala .a 4192 to 4745 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
BP418962 small intestine .a 4284 to 4779 497 to 2       496/497
(99 %)
0 diff
(100 %id)
N92568 parathyroid gland, parathyroid tumor .a 4378 to 4908 10 to 541     Submitted on the opposite strand 532/544
(97 %)
15 diff
(97.3 %id)
CD300658 testis .a 4416 to 4920 1 to 509       509/1037
(49 %)
29 diff
(97.3 %id)
R15391 whole brain .a 4542 to 4970 1 to 438       438/464
(94 %)
17 diff
(96.4 %id)
TI_2016726535   .a 4543 to 5619 1178 to 109       1070/1285
(83 %)
0 diff
(100 %id)
AI692296 carcinoid, lung .a 4581 to 5119 1 to 539     Submitted on the opposite strand 539/539
(100 %)
0 diff
(100 %id)
BF444961 carcinoid, lung .a 4585 to 5173 1 to 589     Submitted on the opposite strand 589/589
(100 %)
0 diff
(100 %id)
AI912033 carcinoid, lung .a 4587 to 5133 1 to 547     Submitted on the opposite strand 547/547
(100 %)
0 diff
(100 %id)
AA334141   .a 4818 to 5099 1 to 282       282/282
(100 %)
0 diff
(100 %id)
AW965414   .a 4826 to 5367 1 to 543       543/543
(100 %)
2 diff
(99.7 %id)
TI_2016727419   .a 4852 to 5616 1 to 762       762/1293
(58 %)
6 diff
(99.6 %id)
AA418449 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4936 to 5554 1 to 619       619/619
(100 %)
3 diff
(99.6 %id)
CN313384 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5020 to 5611 1 to 591       591/591
(100 %)
2 diff
(99.7 %id)
D79362 aorta .a 5243 to 5635 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
CA427715 Bone, Subchondral Bone .a 5453 to 6254 812 to 19   AAA   794/821
(96 %)
18 diff
(97.9 %id)
TI_154117444   .a 5574 to 6254 726 to 44   AAA   683/685
(99 %)
7 diff
(99.0 %id)
AI434081 lymph node, lymphoma, follicular mixed small and largecell .a 5752 to 6250 507 to 7       501/507
(98 %)
0 diff
(100 %id)
AW130352 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 5763 to 6245 486 to 2       485/486
(99 %)
0 diff
(100 %id)
DB302823 amygdala .a 5794 to 6368 577 to 1       577/577
(100 %)
5 diff
(99.2 %id)
BX110103 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 5815 to 6254 456 to 15   AAA   442/442
(100 %)
2 diff
(99.6 %id)
FN168374 breast carcinoma .a 5852 to 5923 1 to 70       70/81
(86 %)
4 diff
(95.1 %id)
AW195800 Kidney .a 5880 to 6388 514 to 2   tiling clone,   513/514
(99 %)
0 diff
(100 %id)
AV734654 pheochromocytoma .a 5909 to 6368 1 to 461   AAA   461/461
(100 %)
6 diff
(98.7 %id)
FN065600 breast carcinoma .a 5913 to 6023 1 to 111       111/111
(100 %)
0 diff
(100 %id)
C21436   .a 5962 to 6283 1 to 324       324/324
(100 %)
3 diff
(99.1 %id)
AI678326 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 5992 to 6258 269 to 1       269/269
(100 %)
3 diff
(98.9 %id)
AI273795 ovary, tumor, 5 pooled (see description) .a 6134 to 6368 235 to 1       235/235
(100 %)
1 diff
(99.6 %id)
CB114968 Liver .a 6368 to 6934 1 to 567       567/567
(100 %)
5 diff
(99.2 %id)
DB509089.
matches multiple genes
testis .a 6373 to 6720 358 to 2     also hits gene ramara 357/358
(99 %)
0 diff
(100 %id)
DB525331.
matches multiple genes
testis .a 6373 to 6810 438 to 1   tiling clone, also hits gene ramara 438/438
(100 %)
2 diff
(99.6 %id)
BF223974 carcinoid, lung .a 6430 to 7038 617 to 8       610/617
(98 %)
0 diff
(100 %id)
BE219815 carcinoid, lung .a 6537 to 7038 508 to 7   tiling clone,   502/508
(98 %)
0 diff
(100 %id)
BF966360 brain, hippocampus .b 1 to 515 7 to 519       519/828
(62 %)
12 diff
(98.6 %id)
DB445770 testis .b 1 to 427 5 to 431   tiling clone,   431/431
(100 %)
1 diff
(99.8 %id)
DB472492 hippocampus .b 1 to 480 2 to 481       481/481
(100 %)
14 diff
(97.1 %id)
DB035464 testis .b 1 to 553 2 to 556   tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
AL713747 human skeletal muscle .b 138 to 5452 1 to 5311 D406G N458S tiling clone, available from DKFZ, AAA   5311/5311
(100 %)
20 diff
(99.7 %id)
DB337388 testis .b 1178 to 1704 527 to 1   tiling clone,   527/527
(100 %)
1 diff
(99.9 %id)
BF966614 brain, hippocampus .b 1578 to 2313 761 to 1   tiling clone,   631/765
(82 %)
44 diff
(94.3 %id)
AK310643 thymus .c 1 to 1346 2 to 1347   tiling clone,   1347/1633
(82 %)
1 diff
(100.0 %id)
DR005687 Prostate .c 10 to 724 4 to 718       715/718
(99 %)
6 diff
(99.2 %id)
AL832037 bone marrow .c 1312 to 5089 1 to 3780   tiling clone, available from DKFZ, AAA   3780/3780
(100 %)
8 diff
(99.8 %id)
AL832040 bone marrow .c 1312 to 5089 1 to 3780   available from DKFZ, AAA   3780/3780
(100 %)
8 diff
(99.8 %id)
BQ229687 melanotic melanoma, skin .d 1 to 823 8 to 833   tiling clone,   826/854
(96 %)
15 diff
(98.3 %id)
CR737995   .d 575 to 1289 1 to 716   tiling clone,   716/716
(100 %)
1 diff
(99.9 %id)
DB457095.
matches multiple genes
testis .e 1 to 470 1 to 492   tiling clone, also hits gene ramara 492/492
(100 %)
12 diff
(97.6 %id)
CR625622 B cells (Ramos cell line) .e 303 to 2044 1 to 1742 exact tiling clone,   1742/1742
(100 %)
0 diff
(100 %id)
AL559960 B cells (Ramos cell line), B cells from Burkitt lymphoma .e 303 to 1189 1 to 886   fully sequenced,   886/886
(100 %)
2 diff
(99.8 %id)
AL581483 B cells (Ramos cell line), B cells from Burkitt lymphoma .e 1128 to 2008 913 to 33   fully sequenced,   881/913
(96 %)
6 diff
(99.4 %id)
CR614890 neuroblastoma .f 1 to 1617 1 to 1617 exact tiling clone,   1617/1617
(100 %)
0 diff
(100 %id)
CR608058 Neuroblastoma Cot 50-normalized .g 1 to 1353 1 to 1353 exact tiling clone,   1353/1353
(100 %)
0 diff
(100 %id)
AL530470 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .g 1 to 704 1 to 703   fully sequenced,   703/703
(100 %)
6 diff
(99.2 %id)
BC005991 Bone marrow, chronic myelogenous leukemia .g 5 to 1392 1 to 1388 K67E W283R tiling clone, available from MGC, AAA   1388/1388
(100 %)
3 diff
(99.8 %id)
CD655289 Embryonic Stem cells .g 9 to 770 9 to 769       761/886
(85 %)
7 diff
(99.3 %id)
BI550111 brain, hippocampus .g 11 to 620 1 to 611       611/611
(100 %)
5 diff
(99.2 %id)
BG494761 lung, mucoepidermoid carcinoma .g 13 to 597 1 to 584       584/590
(98 %)
5 diff
(99.2 %id)
BG494084 lung, mucoepidermoid carcinoma .g 13 to 603 1 to 593       593/593
(100 %)
5 diff
(99.2 %id)
BG529447 embryonal carcinoma, testis .g 13 to 674 1 to 672       672/773
(86 %)
28 diff
(96.4 %id)
DW408163 Liver .g 14 to 436 18 to 440       423/440
(96 %)
7 diff
(98.5 %id)
BG566611 Liver .g 15 to 677 1 to 667       667/819
(81 %)
13 diff
(98.5 %id)
TI_44169630   .g 15 to 620 93 to 699       607/699
(86 %)
8 diff
(98.9 %id)
DB138150 thymus .g 20 to 573 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BX423986 neuroblastoma .g 50 to 1121 1069 to 3 V3X D5I P6Q T7L A9X ...     1067/1069
(99 %)
24 diff
(97.8 %id)
TI_1948074399   .g 56 to 564 130 to 638   fully sequenced,   509/638
(79 %)
9 diff
(98.6 %id)
TI_1948074585   .g 56 to 943 128 to 1013 K67E P248X F256S H260T S261A ... fully sequenced,   886/1013
(87 %)
35 diff
(96.6 %id)
TI_1948074773   .g 56 to 564 126 to 634   fully sequenced,   509/634
(80 %)
7 diff
(98.9 %id)
TI_1948074958   .g 56 to 929 1004 to 122 R2G K4E D5R P6F T7Q ...     883/1266
(69 %)
21 diff
(98.4 %id)
AL516184 brain, neuroblastoma, neuroblastoma cells .g 222 to 1139 917 to 1       917/917
(100 %)
7 diff
(99.3 %id)
TI_1948074400   .g 503 to 929 549 to 123   fully sequenced,   427/549
(77 %)
1 diff
(99.9 %id)
TI_1948074586   .g 503 to 929 547 to 121   fully sequenced,   427/547
(78 %)
1 diff
(99.9 %id)
TI_1948074774   .g 503 to 929 548 to 122   fully sequenced,   427/548
(77 %)
1 diff
(99.9 %id)
AL530469 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .g 643 to 1353 709 to 1   fully sequenced,   709/709
(100 %)
18 diff
(97.5 %id)
BQ292555 amnion_normal .g 771 to 1064 293 to 1       293/293
(100 %)
3 diff
(99.0 %id)
AI927655 Kidney .g 824 to 1392 572 to 4       569/572
(99 %)
0 diff
(100 %id)
BQ009122 Chondrosarcoma, Left Pubic Bone .g 831 to 1391 580 to 19   AAA   562/563
(99 %)
5 diff
(99.2 %id)
AW173610 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .g 974 to 1230 257 to 1       257/257
(100 %)
4 diff
(98.5 %id)
AI189941 placenta .g 1019 to 1392 380 to 7       374/380
(98 %)
0 diff
(100 %id)
CD642341 Embryonic Stem cells .h 1 to 770 5 to 767 D174R Q175S F177L D178T R179E ... tiling clone,   763/813
(93 %)
17 diff
(98.0 %id)
BG613694 embryonal carcinoma, testis .i 1 to 514 3 to 517 K67E K133Q L134I S135I T136N ... tiling clone,   779/782
(99 %)
22 diff
(97.2 %id)
BG617247 Liver .j 1 to 669 8 to 682 exact tiling clone,   682/682
(100 %)
9 diff
(98.7 %id)
BQ775514 Bone, Human Chondrosarcoma Cell Line .k 1 to 656 672 to 17 exact tiling clone, AAA   656/656
(100 %)
0 diff
(100 %id)
DA322562 hippocampus .k 85 to 637 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BU631216 cell lines, Chondrosarcoma .l 1 to 621 636 to 16 exact tiling clone, AAA   621/621
(100 %)
0 diff
(100 %id)
BU631204 cell lines, Chondrosarcoma .l 5 to 621 632 to 16   AAA   617/617
(100 %)
1 diff
(99.9 %id)
BX472817   .m-u 1 to 536 22 to 559 W8D S9G L10V A11S L13C ... tiling clone,   538/559
(96 %)
6 diff
(99.0 %id)
BX481777   .m-u 361 to 965 1 to 605   tiling clone,   605/605
(100 %)
1 diff
(99.9 %id)
BF245298 brain, glioblastoma .m-u 733 to 1367 1 to 630       630/715
(88 %)
20 diff
(97.3 %id)
AI005216   .m-u 936 to 1374 444 to 6   tiling clone,   439/444
(98 %)
0 diff
(100 %id)
DA111230 cerebellum .m-u 987 to 1582 2 to 598   tiling clone, capped   597/597
(100 %)
1 diff
(99.9 %id)
BM721299 eye, fetal eye .m-u 1377 to 2094 1 to 717   tiling clone,   717/717
(100 %)
4 diff
(99.5 %id)
AA632672 thyroid .m-u 1382 to 1609 1 to 228       228/228
(100 %)
5 diff
(97.9 %id)
DA244742 brain .m-u 1492 to 1834 2 to 345   capped   344/344
(100 %)
1 diff
(99.8 %id)
CN285215 embryonic stem cells, cell lines H1, H7, andH9 .m-u 1661 to 2237 1 to 576   tiling clone,   576/576
(100 %)
4 diff
(99.4 %id)
CN293041 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .m-u 1928 to 2698 1 to 771   tiling clone,   771/771
(100 %)
6 diff
(99.3 %id)
BF132354 lung, mucoepidermoid carcinoma .m-u 2084 to 2811 1 to 715       715/860
(83 %)
23 diff
(97.4 %id)
BM677034 eye, fetal eye .m-u 2301 to 3022 740 to 19   tiling clone, AAA   722/722
(100 %)
3 diff
(99.6 %id)
AI471655 colon, moderately-differentiated adenocarcinoma .m-u 2593 to 3022 430 to 1   tiling clone,   430/430
(100 %)
1 diff
(99.8 %id)
CV575138 cornea, eye .m-u 2986 to 3563 1 to 608   tiling clone,   608/608
(100 %)
10 diff
(98.4 %id)
BU569388 testis .m-u 3293 to 4081 1 to 805   tiling clone,   805/811
(99 %)
23 diff
(97.2 %id)
AK021831 whole embryo, mainly head .m-u 3656 to 4856 1 to 1201   tiling clone, available from FLJ,   1201/1201
(100 %)
2 diff
(99.9 %id)
AU119419 whole embryo, mainly head .m-u 3657 to 4444 2 to 795   capped   794/802
(99 %)
10 diff
(98.8 %id)
DB299884 cerebellum .m-u 4362 to 4856 495 to 1       495/504
(98 %)
1 diff
(99.9 %id)
AI498698 Kidney .m-u 4428 to 4856 429 to 1       429/429
(100 %)
2 diff
(99.6 %id)
AA452247   .m-u 4574 to 4859 286 to 1   tiling clone,   286/286
(100 %)
0 diff
(100 %id)
AU145767 whole embryo, mainly head .m-u 4667 to 4856 190 to 1       190/190
(100 %)
1 diff
(99.5 %id)
DA237765 brain .n-u 1 to 582 2 to 583   tiling clone, capped   582/582
(100 %)
4 diff
(99.4 %id)
AA935364 metastatic prostate bone lesion .n-u 215 to 556 342 to 1   tiling clone, AAA   342/351
(97 %)
3 diff
(99.2 %id)
DB305784 brain .n-u 3403 to 3639 240 to 1   tiling clone,   240/240
(100 %)
2 diff
(99.2 %id)
BG025118 lymph, lymphoma, cell line .o 1 to 700 1 to 702 exact tiling clone,   702/823
(85 %)
13 diff
(98.5 %id)
BE142304 head_neck .p-u 1 to 349 9 to 356 exact tiling clone,   348/356
(97 %)
5 diff
(98.6 %id)
DB510791 testis .p-u 98 to 399 1 to 304 A29G A30C K31Q K32E H33P ... tiling clone, Submitted on the opposite strand 304/304
(100 %)
5 diff
(98.4 %id)
TI_2016726555   Gene USP45, variant not shown         Submitted on the opposite strand    
CA427289 Cell Line, Chondrosarcoma Gene USP45, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BU618757 Cell Line, Chondrosarcoma Gene USP45, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI