To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene USP44TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
111 supporting clones for gene USP44 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB096497 testis .a 1 to 557 2 to 559   tiling clone, capped   558/558
(100 %)
3 diff
(99.5 %id)
DB069766 testis .a 11 to 558 2 to 549   tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
DB454726 testis .a 21 to 495 1 to 475       475/475
(100 %)
0 diff
(100 %id)
BI459992 testis .a 29 to 893 1 to 874       878/875
(100 %)
31 diff
(96.5 %id)
DB076044 testis .a 35 to 486 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
DB442656 testis .a 60 to 515 1 to 456       456/456
(100 %)
1 diff
(99.8 %id)
AK315697 testis .a 68 to 2498 1 to 2431 T91A tiling clone,   2431/2431
(100 %)
2 diff
(100.0 %id)
DB067072 testis .a 69 to 596 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
BI462683 testis .a 106 to 747 1 to 645       645/874
(73 %)
18 diff
(98.0 %id)
DB447875 testis .b 1 to 411 1 to 413       413/413
(100 %)
4 diff
(99.1 %id)
DB462518 testis .b 1 to 480 1 to 480   tiling clone,   480/480
(100 %)
1 diff
(99.8 %id)
NM_001042403.1   .b 1 to 3323 1 to 3323 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3323/3323
(100 %)
0 diff
(100 %id)
DB457694 testis .b 6 to 475 1 to 470       470/470
(100 %)
2 diff
(99.6 %id)
DB087642 testis .b 19 to 585 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BC030704 testis .b 20 to 2663 1 to 2644 T91A tiling clone, available from MGC, AAA   2644/2644
(100 %)
5 diff
(99.9 %id)
BG722436 testis .b 20 to 719 1 to 708       708/712
(99 %)
17 diff
(97.7 %id)
DB460240 testis .b 30 to 485 1 to 456       456/456
(100 %)
1 diff
(99.8 %id)
BI560712 testis .b 38 to 899 1 to 858       858/862
(99 %)
34 diff
(96.1 %id)
TI_44349702   .b 43 to 899 87 to 939       853/943
(90 %)
36 diff
(96.2 %id)
DA092275 cerebellum .b 45 to 617 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
AK027434   .b 50 to 3161 1 to 3111 T91A M123L M208S P209L P210Q ... tiling clone, available from FLJ,   3111/3111
(100 %)
5 diff
(99.9 %id)
DA727877   .b 51 to 792 2 to 752   capped   751/751
(100 %)
10 diff
(98.7 %id)
BI458616 testis .c 1 to 757 16 to 771       763/771
(98 %)
39 diff
(95.0 %id)
BI458694 testis .c 1 to 594 16 to 616       608/616
(98 %)
31 diff
(95.0 %id)
DB443014 testis .c 1 to 400 5 to 403       403/403
(100 %)
2 diff
(99.6 %id)
NM_032147.2   .c 1 to 3461 5 to 3465 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3465/3465
(100 %)
0 diff
(100 %id)
DB083121 testis .c 1 to 568 2 to 570   tiling clone, capped   569/569
(100 %)
3 diff
(99.5 %id)
BG771888 testis .c 3 to 755 1 to 753       753/753
(100 %)
10 diff
(98.7 %id)
DB442004 testis .c 8 to 442 1 to 436       436/436
(100 %)
1 diff
(99.8 %id)
DB443393 testis .c 8 to 469 1 to 463       463/463
(100 %)
7 diff
(98.5 %id)
DB444206 testis .c 24 to 452 1 to 430       430/435
(98 %)
25 diff
(94.3 %id)
DB093786 testis .c 24 to 576 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
DB078516 testis .c 31 to 603 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
AL136825 testis .c 33 to 2802 1 to 2771 T91A tiling clone, available from DKFZ, AAA   2771/2836
(97 %)
5 diff
(99.9 %id)
DB456039 testis .c 41 to 524 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
DB038363 testis .c 52 to 624 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DB083230 testis .c 53 to 599 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DB100482 testis .c 57 to 643 2 to 588   capped   587/591
(99 %)
4 diff
(99.4 %id)
CN262139 embryonic stem cells, cell lines H1, H7, andH9 .c 65 to 551 1 to 487       487/487
(100 %)
1 diff
(99.8 %id)
CN262140 embryonic stem cells, cell lines H1, H7, andH9 .c 80 to 844 1 to 764       764/764
(100 %)
3 diff
(99.7 %id)
CN262138 embryonic stem cells, cell lines H1, H7, andH9 .c 111 to 626 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
CN262135 embryonic stem cells, cell lines H1, H7, andH9 .c 134 to 888 1 to 755       755/755
(100 %)
3 diff
(99.7 %id)
CX751732 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 206 to 949 1 to 744     Submitted on the opposite strand 744/744
(100 %)
6 diff
(99.2 %id)
DR002923 fetal brain .c 212 to 712 21 to 523       503/523
(96 %)
6 diff
(98.9 %id)
AA232443 brain, neuroepithelial cells .c 214 to 498 18 to 302       285/302
(94 %)
10 diff
(96.7 %id)
CV024176 mixed .c 283 to 849 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
TI_1948140658   .c 283 to 1091 127 to 940       814/1327
(61 %)
45 diff
(96.7 %id)
TI_1948140659   .c 283 to 1213 130 to 1068   tiling clone,   939/1245
(75 %)
38 diff
(97.0 %id)
TI_1948140981   .c 283 to 843 130 to 691       562/1454
(38 %)
3 diff
(99.8 %id)
TI_1948140982   .c 283 to 1219 134 to 1083       950/1318
(72 %)
37 diff
(97.2 %id)
TI_1948141322   .c 283 to 956 128 to 808       681/1441
(47 %)
22 diff
(98.5 %id)
TI_1948141660   .c 283 to 935 128 to 783       656/1419
(46 %)
21 diff
(98.6 %id)
TI_1948141661   .c 283 to 1217 128 to 1069       942/1307
(72 %)
41 diff
(96.9 %id)
AI927881 Kidney .c 314 to 839 524 to 1   tiling clone,   524/524
(100 %)
2 diff
(99.7 %id)
CD642865 Embryonic Stem cells .c 953 to 1712 1 to 760       760/762
(99 %)
5 diff
(99.4 %id)
CD655048 Embryonic Stem cells .c 953 to 1761 1 to 806       806/832
(96 %)
29 diff
(96.6 %id)
TI_1948140660   .c 1457 to 2426 1111 to 122       990/1289
(76 %)
34 diff
(97.4 %id)
TI_1948140983   .c 1462 to 2426 1084 to 123       962/1307
(73 %)
35 diff
(97.4 %id)
TI_1948141662   .c 1514 to 2426 1038 to 123       916/1311
(69 %)
35 diff
(97.4 %id)
TI_1948140661   .c 1597 to 2426 954 to 123       830/1335
(62 %)
26 diff
(98.1 %id)
TI_1948141324   .c 1632 to 2426 917 to 119       799/1401
(57 %)
20 diff
(98.6 %id)
BI832035 brain, medulla .c 1658 to 2399 28 to 773       746/773
(96 %)
15 diff
(98.1 %id)
TI_57174403   .c 1658 to 2399 28 to 773       746/773
(96 %)
15 diff
(98.1 %id)
TI_1948141325   .c 1710 to 2426 857 to 127       731/1403
(52 %)
32 diff
(97.8 %id)
TI_1948140984   .c 1711 to 2426 840 to 123       718/1326
(54 %)
47 diff
(96.5 %id)
CN262137 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1751 to 2471 1 to 721       721/721
(100 %)
0 diff
(100 %id)
TI_1948143600   .c 1765 to 2426 799 to 134       666/1399
(47 %)
20 diff
(98.6 %id)
BU568345 testis .c 1812 to 2620 1 to 816       816/819
(99 %)
24 diff
(97.1 %id)
TI_1948141663   .c 1830 to 2426 723 to 123       601/1390
(43 %)
23 diff
(98.4 %id)
AA383112 testis .c 1845 to 2189 9 to 354       346/354
(97 %)
7 diff
(98.1 %id)
CN262136 embryonic stem cells, cell lines H1, H7, andH9 .c 1924 to 2556 1 to 633       633/633
(100 %)
0 diff
(100 %id)
DB506894 testis .c 2339 to 2801 1 to 462   AAA Submitted on the opposite strand 462/462
(100 %)
3 diff
(99.4 %id)
DB523184 testis .c 2341 to 2800 1 to 460     Submitted on the opposite strand 460/461
(99 %)
1 diff
(99.8 %id)
DB507700 testis .c 2368 to 2801 1 to 436     Submitted on the opposite strand 436/436
(100 %)
2 diff
(99.6 %id)
DB517192 testis .c 2387 to 2799 1 to 413     Submitted on the opposite strand 413/449
(91 %)
23 diff
(94.9 %id)
DB508335 testis .c 2397 to 2801 1 to 406   AAA Submitted on the opposite strand 406/406
(100 %)
4 diff
(99.1 %id)
BU852996 testis .c 2420 to 3000 1 to 589   tiling clone,   589/762
(77 %)
16 diff
(98.0 %id)
AA931538 carcinoid, lung .c 2562 to 2950 1 to 389     Submitted on the opposite strand 389/389
(100 %)
0 diff
(100 %id)
BE503783 carcinoid, lung .c 2562 to 3118 1 to 556     Submitted on the opposite strand 556/556
(100 %)
1 diff
(99.9 %id)
BU561433 testis .c 2589 to 3314 1 to 729       729/823
(88 %)
16 diff
(98.1 %id)
AA641937 germinal center B cell .c 2616 to 3060 1 to 444       444/444
(100 %)
3 diff
(99.4 %id)
BQ429545 testis .c 2669 to 3465 1 to 808       808/831
(97 %)
27 diff
(96.8 %id)
BU182596 testis .c 2745 to 3456 1 to 715   tiling clone,   715/753
(94 %)
6 diff
(99.3 %id)
BU854466 testis .c 2785 to 3483 1 to 695   tiling clone,   695/785
(88 %)
11 diff
(98.6 %id)
AA448146   .c 2818 to 3269 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
AW274278 pooled .c 2938 to 3465 527 to 1       527/527
(100 %)
2 diff
(99.7 %id)
DB527939 testis .c 2977 to 3461 1 to 485     Submitted on the opposite strand 485/485
(100 %)
0 diff
(100 %id)
BX282367 carcinoid, lung .c 2985 to 3474 490 to 1   tiling clone,   490/490
(100 %)
0 diff
(100 %id)
DB520135 testis .c 3010 to 3459 1 to 458     Submitted on the opposite strand 458/459
(99 %)
15 diff
(96.8 %id)
DB525676 testis .c 3027 to 3458 1 to 432     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
DB507949 testis .c 3051 to 3462 1 to 413     Submitted on the opposite strand 413/414
(99 %)
9 diff
(97.9 %id)
DB507532 testis .c 3058 to 3460 1 to 401     Submitted on the opposite strand 401/401
(100 %)
2 diff
(99.6 %id)
AW969665   .c 3087 to 3469 485 to 103     Submitted on the opposite strand 383/603
(63 %)
0 diff
(100 %id)
DB510146 testis .c 3088 to 3460 1 to 373     Submitted on the opposite strand 373/374
(99 %)
12 diff
(96.8 %id)
AA501482 alveolar rhabdomyosarcoma .c 3109 to 3461 352 to 1       352/352
(100 %)
1 diff
(99.8 %id)
AA729685 pooled germ cell tumors .c 3132 to 3461 330 to 1       330/330
(100 %)
4 diff
(98.8 %id)
D61996   .c 3159 to 3461 1 to 303       303/303
(100 %)
1 diff
(99.7 %id)
DB515496 testis .c 3173 to 3459 66 to 352     Submitted on the opposite strand 287/353
(81 %)
16 diff
(95.5 %id)
AA641888 germinal center B cell .c 3175 to 3472 298 to 1       298/298
(100 %)
1 diff
(99.7 %id)
AA232294 brain, neuroepithelial cells .c 3213 to 3461 249 to 1       249/249
(100 %)
0 diff
(100 %id)
DB521454 testis .c 3551 to 4006 1 to 456   tiling clone, Submitted on the opposite strand 456/458
(99 %)
2 diff
(99.6 %id)
DB513042 testis .c 3567 to 4010 1 to 448     Submitted on the opposite strand 448/451
(99 %)
12 diff
(97.4 %id)
AA448003   .c 3600 to 4015 417 to 2   tiling clone,   416/417
(99 %)
0 diff
(100 %id)
BM023421 Islets of Langerhans, Pancreas .c 3705 to 4008 1 to 308   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 308/308
(100 %)
5 diff
(98.4 %id)
BM021418 Islets of Langerhans, Pancreas .c 3717 to 4008 1 to 292   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 292/292
(100 %)
2 diff
(99.4 %id)
BM021157 Islets of Langerhans, Pancreas .c 3792 to 4013 237 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 222/222
(100 %)
0 diff
(100 %id)
BM023146 Islets of Langerhans, Pancreas .c 3865 to 4013 164 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 149/149
(100 %)
0 diff
(100 %id)
AA102675 brain, neuroepithelial cells .d 1 to 431 1 to 437   tiling clone, to resequence, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 437/437
(100 %)
9 diff
(98.0 %id)
AA101229 brain, neuroepithelial cells .d 1314 to 1774 482 to 16   tiling clone, to resequence, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 467/472
(98 %)
7 diff
(98.6 %id)
CN262133 embryonic stem cells, cell lines H1, H7, andH9 .e 1 to 463 1 to 463 exact tiling clone,   463/463
(100 %)
0 diff
(100 %id)
BF979619 testis .f 1 to 634 1 to 629 T67A tiling clone,   629/880
(71 %)
12 diff
(98.7 %id)
BF980259 testis .f 1047 to 1793 748 to 1   tiling clone,   748/749
(99 %)
22 diff
(97.1 %id)
CN262134 embryonic stem cells, cell lines H1, H7, andH9 .g 1 to 679 1 to 688 T91A tiling clone,   688/688
(100 %)
6 diff
(99.2 %id)
BI560025 testis .h 1 to 667 1 to 667 T91A tiling clone,   667/667
(100 %)
5 diff
(99.3 %id)
DB442798 testis .h 6 to 295 1 to 293       293/293
(100 %)
6 diff
(98.0 %id)
TI_44348422   .h 6 to 667 142 to 803 T91A     662/803
(82 %)
8 diff
(99.1 %id)
AA357258   .i-u 1 to 408 419 to 8 V2G L7W F8S S10R A13G ... tiling clone,   412/419
(98 %)
0 diff
(100 %id)
DB481807 hippocampus Gene USP44, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI