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Gene USP38TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
239 supporting clones for gene USP38 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB461580 testis USP38.a 1 to 480 1 to 489   tiling clone,   489/489
(100 %)
8 diff
(98.4 %id)
BI545515 brain, hippocampus USP38.a 227 to 844 1 to 619       619/877
(70 %)
20 diff
(97.8 %id)
CB960997 Human Placenta, placenta USP38.a 232 to 762 28 to 566       539/845
(63 %)
13 diff
(98.5 %id)
TI_44165593   USP38.a 232 to 844 127 to 740       614/998
(61 %)
17 diff
(98.3 %id)
NM_032557.5   USP38.a 232 to 5426 1 to 5195 exact RefSeq,   5195/5195
(100 %)
0 diff
(100 %id)
DB235477 trachea USP38.a 233 to 696 2 to 466   capped   465/465
(100 %)
1 diff
(99.8 %id)
BQ067323 pooled brain, lung, testis USP38.a 247 to 964 18 to 735       718/1158
(62 %)
6 diff
(99.5 %id)
DA806177 brain USP38.a 250 to 808 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
CR985887 T-Lymphocytes USP38.a 250 to 716 1 to 467       467/469
(99 %)
1 diff
(99.8 %id)
BU429173 lymph USP38.a 251 to 535 1 to 285       285/285
(100 %)
5 diff
(98.3 %id)
BX419418 brain, fetal brain USP38.a 252 to 1199 1 to 948       948/948
(100 %)
38 diff
(96.0 %id)
BX426084 brain, fetal brain USP38.a 252 to 1357 1 to 1105   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1105/1149
(96 %)
25 diff
(97.9 %id)
BG392586 embryonal carcinoma, cell line, testis USP38.a 258 to 844 1 to 584       584/584
(100 %)
13 diff
(97.8 %id)
BM151751 leukopheresis USP38.a 258 to 703 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
TI_154150146   USP38.a 258 to 828 78 to 653       576/778
(74 %)
41 diff
(94.8 %id)
BU430329 lymph USP38.a 259 to 695 1 to 437       437/437
(100 %)
8 diff
(98.2 %id)
AL833976 testis USP38.a 260 to 4924 1 to 4664 exact tiling clone, available from DKFZ, AAA   4664/4664
(100 %)
2 diff
(100.0 %id)
DB149664 thymus USP38.a 260 to 734 2 to 477   capped   476/478
(99 %)
4 diff
(99.2 %id)
DB471983 hippocampus USP38.a 261 to 759 1 to 499       499/499
(100 %)
7 diff
(98.6 %id)
DB483741 hippocampus USP38.a 264 to 725 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
TI_154151675   USP38.a 264 to 713 78 to 527       450/452
(99 %)
4 diff
(99.2 %id)
BU429419 lymph USP38.a 276 to 493 8 to 225       218/240
(90 %)
6 diff
(97.5 %id)
BC068975 Testis, embryonal carcinoma USP38.a 285 to 4938 1 to 4653 exact available from MGC, AAA   4653/4653
(100 %)
3 diff
(100.0 %id)
BQ231325 embryonal carcinoma, cell line, testis USP38.a 286 to 940 1 to 659       659/1019
(64 %)
9 diff
(99.2 %id)
DA862214 placenta USP38.a 299 to 719 2 to 424   capped   423/423
(100 %)
2 diff
(99.6 %id)
CA393804 eye, RPE/choroid USP38.a 484 to 997 1 to 514       514/514
(100 %)
0 diff
(100 %id)
DN994216 brain, whole brain USP38.a 686 to 1534 1 to 848       848/848
(100 %)
11 diff
(98.8 %id)
AI372004 pooled germ cell tumors USP38.a 732 to 1057 400 to 75       326/400
(81 %)
0 diff
(100 %id)
DB153014 thymus USP38.a 745 to 1329 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
EL737071 mixed USP38.a 766 to 1402 1 to 637       637/637
(100 %)
8 diff
(98.8 %id)
TI_1948231884   USP38.a 766 to 1583 127 to 950       824/1327
(62 %)
28 diff
(97.9 %id)
TI_1948231885   USP38.a 766 to 1448 123 to 807       685/1164
(58 %)
8 diff
(99.4 %id)
TI_1948232181   USP38.a 766 to 1583 127 to 959       833/1336
(62 %)
38 diff
(97.2 %id)
TI_1948232182   USP38.a 766 to 1562 127 to 931       805/1086
(74 %)
23 diff
(97.9 %id)
TI_1948232479   USP38.a 766 to 1576 122 to 944       823/1366
(60 %)
25 diff
(98.2 %id)
TI_1948232480   USP38.a 766 to 1521 128 to 888       761/1130
(67 %)
17 diff
(98.5 %id)
TI_1948232773   USP38.a 766 to 1443 128 to 806       679/1400
(48 %)
14 diff
(99.0 %id)
TI_1948232774   USP38.a 766 to 1531 127 to 904       778/1124
(69 %)
21 diff
(98.2 %id)
CN340902 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells USP38.a 788 to 1419 1 to 632       632/632
(100 %)
2 diff
(99.7 %id)
DB133138 thymus USP38.a 1008 to 1573 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DB109332 thymus USP38.a 1010 to 1580 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB133990 thymus USP38.a 1080 to 1619 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BX431115 brain, fetal brain USP38.a 1097 to 1965 1 to 865       865/871
(99 %)
9 diff
(99.0 %id)
BX431114 brain, fetal brain USP38.a 1113 to 1756 21 to 666       646/727
(88 %)
27 diff
(96.3 %id)
DA097971 cerebellum USP38.a 1244 to 1804 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA818561   USP38.a 1244 to 1727 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
BM463083 melanotic melanoma, skin USP38.a 1270 to 2346 25 to 1107       1083/1107
(97 %)
36 diff
(96.8 %id)
AA569627 Prostate, prostatic intraepithelial neoplasia - highgrade USP38.a 1272 to 1575 7 to 310       304/317
(95 %)
2 diff
(99.4 %id)
DA887326   USP38.a 1299 to 1845 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BM472589 embryonal carcinoma, cell line, testis USP38.a 1417 to 2260 1 to 851       851/988
(86 %)
11 diff
(98.9 %id)
DA814766   USP38.a 1442 to 1964 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DA243546 brain USP38.a 1458 to 2029 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA507851 brain USP38.a 1474 to 2052 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
AA314665 colon USP38.a 1504 to 2030 1 to 526       526/526
(100 %)
1 diff
(99.9 %id)
F00199 leg muscle, skeletal muscle USP38.a 1510 to 1797 1 to 288       288/288
(100 %)
1 diff
(99.7 %id)
BF246057 brain, glioblastoma USP38.a 1545 to 2132 1 to 601       601/787
(76 %)
48 diff
(94.0 %id)
DB089846 testis USP38.a 1548 to 2113 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AB067478 brain USP38.a 1551 to 4924 1 to 3373   available from KIAA,   3373/3373
(100 %)
2 diff
(100.0 %id)
DB261889 uterus USP38.a 1565 to 2147 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA830543 placenta USP38.a 1587 to 2261 2 to 683   capped   682/750
(90 %)
18 diff
(97.6 %id)
BQ216462 melanotic melanoma, skin USP38.a 1647 to 2537 1 to 897       897/899
(99 %)
15 diff
(98.4 %id)
CV572305 cornea, eye USP38.a 1683 to 2293 1 to 611       611/611
(100 %)
0 diff
(100 %id)
AK057992 stomach mucosa USP38.a 1708 to 4867 1 to 3162   available from FLJ, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 3162/3162
(100 %)
5 diff
(99.9 %id)
N90484 liver and spleen USP38.a 1752 to 1975 1 to 222       222/228
(97 %)
4 diff
(98.3 %id)
CB132888 Liver USP38.a 1844 to 2483 1 to 640       640/640
(100 %)
0 diff
(100 %id)
BQ311437 breast_normal USP38.a 1947 to 2185 265 to 28       238/265
(89 %)
5 diff
(98.2 %id)
BM452222 melanotic melanoma, skin USP38.a 1975 to 3036 1 to 1077       1077/1120
(96 %)
28 diff
(97.5 %id)
BQ378492 uterus_tumor USP38.a 2049 to 2431 384 to 1       384/384
(100 %)
3 diff
(99.3 %id)
BF911428 uterus_tumor USP38.a 2087 to 2493 420 to 14     Submitted on the opposite strand 407/420
(96 %)
4 diff
(99.1 %id)
BP332223 renal proximal tubule USP38.a 2172 to 2744 1 to 574       574/574
(100 %)
3 diff
(99.5 %id)
DA518070 brain USP38.a 2193 to 2750 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA849346 placenta USP38.a 2211 to 2761 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BP278391   USP38.a 2215 to 2798 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA505901 brain USP38.a 2292 to 2851 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA551165   USP38.a 2363 to 2869 2 to 508   capped   507/509
(99 %)
3 diff
(99.5 %id)
BG944918 blood USP38.a 2386 to 2728 1 to 343       343/343
(100 %)
1 diff
(99.8 %id)
BC017668 Colon, adenocarcinoma USP38.a 2386 to 4924 2538 to 1   available from MGC, Submitted on the opposite strand 2538/2538
(100 %)
2 diff
(100.0 %id)
BQ718809 dorsal root ganglia USP38.a 2386 to 3331 1 to 944       944/944
(100 %)
6 diff
(99.4 %id)
BP289369 lung USP38.a 2397 to 2965 1 to 569       569/569
(100 %)
5 diff
(99.2 %id)
BE868998 adenocarcinoma, colon USP38.a 2406 to 3038 1 to 645   available from MGC,   645/758
(85 %)
30 diff
(96.1 %id)
DA866133 Prostate USP38.a 2428 to 2979 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DB526995 testis USP38.a 2461 to 2909 1 to 449     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
BG112979 Bone, osteosarcoma, cell line USP38.a 2574 to 3327 1 to 740       740/954
(77 %)
12 diff
(98.8 %id)
CN340901 embryonic stem cells, cell lines H1, H7, andH9 USP38.a 2589 to 3288 1 to 700       700/700
(100 %)
0 diff
(100 %id)
DB184726 liver, tumor tissue USP38.a 2608 to 3155 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
CR619187 Placenta Cot 25-normalized USP38.a 2645 to 4305 1 to 1661   tiling clone,   1661/1661
(100 %)
0 diff
(100 %id)
BX396124 Placenta Cot 25-normalized USP38.a 2645 to 3728 1 to 1076       1076/1080
(99 %)
14 diff
(98.8 %id)
AF211481 adrenal gland USP38.a 2659 to 4274 1 to 1615   AAA   1615/1615
(100 %)
5 diff
(99.7 %id)
F06272 brain, total brain USP38.a 2660 to 2956 1 to 297       297/297
(100 %)
4 diff
(98.7 %id)
R16333 whole brain USP38.a 2662 to 2963 1 to 303       303/402
(75 %)
3 diff
(99.3 %id)
BP258648 heart USP38.a 2686 to 3264 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
AV708779 adrenal gland USP38.a 2706 to 3099 1 to 394       394/394
(100 %)
0 diff
(100 %id)
AI992086 pooled germ cell tumors USP38.a 2714 to 3147 434 to 1       434/434
(100 %)
0 diff
(100 %id)
BX488016   USP38.a 2728 to 3267 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BP288840 lung USP38.a 2742 to 3303 1 to 562       562/584
(96 %)
1 diff
(99.9 %id)
BM149032 leukopheresis USP38.a 2753 to 3393 1 to 640       640/640
(100 %)
8 diff
(98.8 %id)
TI_1948232183   USP38.a 2770 to 3893 1243 to 125       1119/1310
(85 %)
74 diff
(94.4 %id)
TI_1948231887   USP38.a 2773 to 3893 1247 to 128       1120/1280
(87 %)
63 diff
(95.1 %id)
DA099039 cerebellum USP38.a 2780 to 3333 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
TI_1948232775   USP38.a 2789 to 3893 1227 to 123       1105/1309
(84 %)
51 diff
(96.2 %id)
BF913945 uterus_tumor USP38.a 2808 to 2945 1 to 138       138/138
(100 %)
0 diff
(100 %id)
AV751655 Pituitary USP38.a 2819 to 3488 1 to 661       661/672
(98 %)
12 diff
(98.3 %id)
BU853668 testis USP38.a 2844 to 3303 1 to 461       461/850
(54 %)
15 diff
(98.3 %id)
TI_1948232481   USP38.a 2847 to 3893 1175 to 127       1049/1325
(79 %)
36 diff
(97.3 %id)
AA284365 germinal center B cell USP38.a 2848 to 3279 1 to 432       432/432
(100 %)
0 diff
(100 %id)
BM150574 leukopheresis USP38.a 2917 to 3239 325 to 6       320/325
(98 %)
0 diff
(100 %id)
DA819405   USP38.a 2927 to 3484 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA680630 ovary USP38.a 2944 to 3495 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BG113469 Bone, osteosarcoma, cell line USP38.a 2957 to 3624 1 to 668       668/668
(100 %)
4 diff
(99.5 %id)
BF694451 muscle (skeletal) USP38.a 2976 to 3627 1 to 661       661/899
(73 %)
22 diff
(97.6 %id)
BM313332 Pancreas, Purified pancreatic islet USP38.a 3000 to 3503 17 to 520       504/520
(96 %)
6 diff
(98.9 %id)
AI347260 colon, colon tumor, RER+ USP38.a 3013 to 3480 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
BX646849 Liver USP38.a 3033 to 3546 1 to 514       514/514
(100 %)
3 diff
(99.5 %id)
BM548692 duodenal adenocarcinoma, cell line, small intestine USP38.a 3076 to 3733 28 to 686       659/1009
(65 %)
24 diff
(97.7 %id)
BG575871 breast, mammary adenocarcinoma, cell line USP38.a 3123 to 3885 1 to 762       762/762
(100 %)
2 diff
(99.8 %id)
AK093289 testis USP38.a 3182 to 4938 1 to 1757   tiling clone, available from FLJ,   1757/1757
(100 %)
1 diff
(100.0 %id)
AX748035   USP38.a 3182 to 4938 1 to 1757       1757/1757
(100 %)
1 diff
(100.0 %id)
DB029863 testis USP38.a 3183 to 3784 2 to 605   capped   604/604
(100 %)
3 diff
(99.6 %id)
BG497756 adenocarcinoma, Prostate USP38.a 3196 to 3956 1 to 766       766/768
(99 %)
26 diff
(96.7 %id)
BG497826 adenocarcinoma, Prostate USP38.a 3196 to 3851 1 to 671       671/947
(70 %)
35 diff
(96.4 %id)
TI_154112295   USP38.a 3198 to 3888 772 to 84   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 689/1010
(68 %)
9 diff
(99.2 %id)
BP378414 uterus USP38.a 3221 to 3800 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
W87850 liver and spleen USP38.a 3317 to 3827 1 to 516   fully sequenced,   516/516
(100 %)
13 diff
(97.5 %id)
BM453058 leiomyosarcoma, uterus USP38.a 3349 to 4269 30 to 958   AAA   929/962
(96 %)
23 diff
(97.7 %id)
CA448595 Chondrosarcoma, Left Pelvis USP38.a 3350 to 3888 556 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 539/556
(96 %)
1 diff
(99.9 %id)
BP263978 small intestine USP38.a 3377 to 3958 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA570546 whole embryo, mainly head USP38.a 3383 to 4204 2 to 826   capped   825/825
(100 %)
10 diff
(98.8 %id)
AW361275 colon USP38.a 3388 to 3740 9 to 359       351/519
(67 %)
9 diff
(98.3 %id)
AW390519 stomach USP38.a 3394 to 3838 445 to 1       445/445
(100 %)
6 diff
(98.7 %id)
DA225246 brain USP38.a 3425 to 3985 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
FN115683 breast carcinoma USP38.a 3431 to 3546 1 to 113       113/113
(100 %)
3 diff
(97.4 %id)
BF791800 adrenal cortex carcinoma, cell line, adrenal gland USP38.a 3455 to 4136 23 to 711       689/869
(79 %)
22 diff
(97.5 %id)
BX390293 Placenta Cot 25-normalized USP38.a 3478 to 3851 1 to 373       373/373
(100 %)
31 diff
(91.7 %id)
AA043526 uterus USP38.a 3486 to 3757 1 to 272       272/276
(98 %)
5 diff
(98.2 %id)
BX369886 Placenta Cot 25-normalized USP38.a 3496 to 4155 1 to 658       658/806
(81 %)
17 diff
(97.9 %id)
BX369885 Placenta Cot 25-normalized USP38.a 3497 to 3862 1 to 366       366/371
(98 %)
5 diff
(98.7 %id)
BP323358 Pancreas USP38.a 3510 to 4085 1 to 583       583/583
(100 %)
9 diff
(98.5 %id)
H68037 liver and spleen USP38.a 3513 to 3824 1 to 312       312/314
(99 %)
3 diff
(99.1 %id)
N78231 liver and spleen USP38.a 3519 to 4092 1 to 584       584/586
(99 %)
7 diff
(98.9 %id)
BF207437 bladder, carcinoma, cell line USP38.a 3534 to 4008 1 to 475       475/475
(100 %)
1 diff
(99.8 %id)
DB552696 hippocampus USP38.a 3536 to 4011 1 to 475     Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
BF033560 adenocarcinoma, ovary USP38.a 3549 to 4024 1 to 476       476/476
(100 %)
0 diff
(100 %id)
AI056270 liver and spleen USP38.a 3552 to 4274 737 to 15   AAA   723/723
(100 %)
7 diff
(99.1 %id)
FN120114 breast carcinoma USP38.a 3555 to 3672 117 to 1     Submitted on the opposite strand 117/117
(100 %)
1 diff
(99.2 %id)
W00688 lung USP38.a 3567 to 4075 1 to 501       501/501
(100 %)
9 diff
(98.3 %id)
W20420 lung USP38.a 3567 to 4019 1 to 460       460/460
(100 %)
7 diff
(98.5 %id)
FN072374 breast carcinoma USP38.a 3586 to 3657 1 to 70       70/70
(100 %)
2 diff
(97.2 %id)
BX116289 liver and spleen USP38.a 3604 to 4412 1 to 808       808/808
(100 %)
2 diff
(99.8 %id)
CR745939 liver and spleen USP38.a 3604 to 4414 1 to 810       810/810
(100 %)
4 diff
(99.6 %id)
T96033 liver and spleen USP38.a 3605 to 3931 1 to 333       333/333
(100 %)
6 diff
(98.2 %id)
AW968013   USP38.a 3606 to 3868 1 to 263       263/345
(76 %)
5 diff
(98.6 %id)
AA262876 germinal center B cell USP38.a 3606 to 4032 1 to 428       428/428
(100 %)
5 diff
(98.9 %id)
CF144570 CNCAP(3)T-225 cell line, Prostate USP38.a 3645 to 3861 1 to 218       218/218
(100 %)
4 diff
(98.2 %id)
AA477059 ovarian tumor, ovary USP38.a 3664 to 4175 1 to 505       505/505
(100 %)
8 diff
(98.5 %id)
CK822281 Pancreas, Purified pancreatic islet USP38.a 3694 to 4265 572 to 1     Submitted on the opposite strand 572/572
(100 %)
0 diff
(100 %id)
BG925110 cartilage USP38.a 3700 to 4274 83 to 656   AAA   574/588
(97 %)
11 diff
(98.2 %id)
AA028059 uterus USP38.a 3700 to 3867 1 to 170       170/170
(100 %)
2 diff
(98.9 %id)
AW993655 breast_normal USP38.a 3705 to 3969 13 to 270       258/270
(95 %)
14 diff
(94.9 %id)
BE813280 breast_normal USP38.a 3705 to 3962 13 to 263       251/281
(89 %)
19 diff
(93.3 %id)
AI701434 carcinoid, lung USP38.a 3738 to 4273 536 to 1       536/536
(100 %)
1 diff
(99.9 %id)
BF510469   USP38.a 3744 to 4033 307 to 18   AAA   290/300
(96 %)
0 diff
(100 %id)
DB343212 thymus USP38.a 3747 to 4274 529 to 1       529/529
(100 %)
4 diff
(99.3 %id)
BE174014 head_neck USP38.a 3756 to 4108 356 to 1     Submitted on the opposite strand 356/366
(97 %)
28 diff
(92.4 %id)
BM313053 Pancreas, Purified pancreatic islet USP38.a 3770 to 4274 505 to 1       505/505
(100 %)
0 diff
(100 %id)
AV709513 adrenal gland USP38.a 3774 to 4478 1 to 706       706/751
(94 %)
47 diff
(93.8 %id)
AV709516 adrenal gland USP38.a 3774 to 4388 1 to 612       612/614
(99 %)
16 diff
(97.4 %id)
W87590 liver and spleen USP38.a 3797 to 4276 490 to 1   fully sequenced,   490/490
(100 %)
15 diff
(97.0 %id)
H90951 liver and spleen USP38.a 3814 to 4139 1 to 325       325/325
(100 %)
3 diff
(99.1 %id)
AA101844 uterus USP38.a 3861 to 4271 411 to 1       411/442
(92 %)
8 diff
(98.2 %id)
FN174140 breast carcinoma USP38.a 3874 to 3970 97 to 1     Submitted on the opposite strand 97/97
(100 %)
0 diff
(100 %id)
AI247955 liver and spleen USP38.a 3904 to 4274 370 to 1       370/370
(100 %)
1 diff
(99.8 %id)
AW571778 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors USP38.a 3919 to 4391 473 to 1       473/473
(100 %)
0 diff
(100 %id)
N69220 liver and spleen USP38.a 3989 to 4274 285 to 1       285/292
(97 %)
1 diff
(99.7 %id)
BF817795 colon_ins USP38.a 3998 to 4576 10 to 585       576/585
(98 %)
6 diff
(99.0 %id)
AI031727 parathyroid gland, parathyroid tumor USP38.a 4043 to 4353 322 to 12   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 311/311
(100 %)
1 diff
(99.7 %id)
TI_149313290   USP38.a 4072 to 4938 938 to 92   AAA   847/975
(86 %)
31 diff
(96.9 %id)
FN054486 breast carcinoma USP38.a 4150 to 4232 1 to 83       83/84
(98 %)
1 diff
(98.9 %id)
BI257616 cervical carcinoma cell line, cervix USP38.a 4233 to 4925 11 to 704       694/723
(95 %)
5 diff
(99.4 %id)
AW977401   USP38.a 4234 to 4924 719 to 27   AAA Submitted on the opposite strand 693/693
(100 %)
6 diff
(99.2 %id)
DB375775 placenta USP38.a 4238 to 4799 556 to 1       556/557
(99 %)
18 diff
(96.8 %id)
AW968011   USP38.a 4249 to 4923 676 to 1     Submitted on the opposite strand 676/677
(99 %)
4 diff
(99.5 %id)
CF541317 lung USP38.a 4263 to 4938 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
AW007250 adenocarcinoma, Pancreas USP38.a 4284 to 4806 523 to 1       523/523
(100 %)
0 diff
(100 %id)
BX413163 brain, fetal brain USP38.a 4299 to 4923 663 to 39       625/936
(66 %)
0 diff
(100 %id)
BQ447933 Knee, Osteoarthritic Cartilage USP38.a 4301 to 4938 656 to 19   AAA   638/638
(100 %)
0 diff
(100 %id)
BU199194   USP38.a 4303 to 4920 1 to 616       616/790
(77 %)
6 diff
(99.3 %id)
DB540735 hippocampus USP38.a 4321 to 4804 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
AA476948 ovarian tumor, ovary USP38.a 4321 to 4804 484 to 1       484/484
(100 %)
0 diff
(100 %id)
DB357323 whole embryo, mainly head USP38.a 4323 to 4924 596 to 1       596/596
(100 %)
24 diff
(96.0 %id)
BM724464 eye, fetal eye USP38.a 4345 to 4924 1 to 580   AAA   580/580
(100 %)
2 diff
(99.7 %id)
AA878950 Kidney USP38.a 4363 to 4804 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
DB316178 brain USP38.a 4375 to 4924 550 to 1       550/550
(100 %)
0 diff
(100 %id)
DB318310   USP38.a 4376 to 4924 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
DB336923 testis USP38.a 4378 to 4938 564 to 1       564/564
(100 %)
3 diff
(99.5 %id)
AI770148 2 pooled tumors (clear cell type), Kidney USP38.a 4394 to 4925 534 to 3       532/534
(99 %)
0 diff
(100 %id)
AI971341 Prostate USP38.a 4394 to 5027 634 to 1       634/634
(100 %)
1 diff
(99.9 %id)
AA814382 germinal center B cell USP38.a 4398 to 4924 554 to 28   AAA   527/527
(100 %)
0 diff
(100 %id)
AW452524   USP38.a 4399 to 4924 541 to 16   AAA   526/526
(100 %)
0 diff
(100 %id)
AW469253 poorly differentiated adenocarcinoma withsignet ring cell features, stomach USP38.a 4401 to 4925 526 to 2       525/526
(99 %)
0 diff
(100 %id)
AI863678 colon, colon tumor, RER+ USP38.a 4424 to 4924 512 to 12   AAA   501/501
(100 %)
0 diff
(100 %id)
AI971187 Prostate USP38.a 4424 to 5027 604 to 1       604/604
(100 %)
1 diff
(99.9 %id)
BP397449 pancreatic islet USP38.a 4428 to 4925 1 to 498     Submitted on the opposite strand 498/500
(99 %)
1 diff
(99.8 %id)
BM461850 leiomyosarcoma, uterus USP38.a 4446 to 4924 1 to 478   AAA   478/478
(100 %)
12 diff
(97.5 %id)
AI651032 Kidney USP38.a 4449 to 4925 478 to 2       477/478
(99 %)
0 diff
(100 %id)
N67872 cochlea, ear USP38.a 4451 to 4925 482 to 5       478/482
(99 %)
0 diff
(100 %id)
N59770 liver and spleen USP38.a 4455 to 4922 470 to 1       470/474
(99 %)
10 diff
(97.9 %id)
AI640328 Kidney USP38.a 4465 to 4938 497 to 24   AAA   474/474
(100 %)
1 diff
(99.8 %id)
N90754 lung USP38.a 4467 to 4938 474 to 15   AAA   460/536
(85 %)
17 diff
(96.9 %id)
AI375528   USP38.a 4468 to 4925 461 to 4       458/461
(99 %)
0 diff
(100 %id)
AW471126 colon, moderately-differentiated adenocarcinoma USP38.a 4480 to 4925 446 to 1       446/446
(100 %)
0 diff
(100 %id)
AV720784 corresponding non cancerous liver tissue USP38.a 4481 to 4900 420 to 1     Submitted on the opposite strand 420/420
(100 %)
0 diff
(100 %id)
AA262265 germinal center B cell USP38.a 4490 to 4924 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AW511527 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors USP38.a 4492 to 4924 433 to 1       433/433
(100 %)
0 diff
(100 %id)
N69021 lung USP38.a 4511 to 4930 436 to 10       427/436
(97 %)
0 diff
(100 %id)
N67601 cochlea, ear USP38.a 4513 to 4925 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AA767878 germinal center B cell USP38.a 4536 to 4924 415 to 27   AAA   389/389
(100 %)
0 diff
(100 %id)
AI033130 liver and spleen USP38.a 4549 to 4924 376 to 1       376/376
(100 %)
0 diff
(100 %id)
AW197132 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney USP38.a 4552 to 5029 478 to 1       478/478
(100 %)
0 diff
(100 %id)
BM053004 Islets of Langerhans, Pancreas USP38.a 4556 to 5138 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
AW129218 Kidney, renal cell tumor USP38.a 4563 to 4804 278 to 37   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 242/242
(100 %)
8 diff
(96.7 %id)
AI264465 adenocarcinoma, colon USP38.a 4572 to 4924 374 to 22   AAA   353/353
(100 %)
2 diff
(99.5 %id)
AW129229 Kidney, renal cell tumor USP38.a 4574 to 4804 267 to 37   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 231/231
(100 %)
9 diff
(96.2 %id)
BX396123 Placenta Cot 25-normalized USP38.a 4576 to 4910 335 to 1       760/1075
(70 %)
24 diff
(97.8 %id)
T96034 liver and spleen USP38.a 4582 to 4824 248 to 1       248/248
(100 %)
5 diff
(98.0 %id)
AA043527 uterus USP38.a 4592 to 4924 341 to 1       341/341
(100 %)
11 diff
(96.8 %id)
FN050874 breast carcinoma USP38.a 4603 to 4681 1 to 79       79/80
(98 %)
1 diff
(98.8 %id)
Z24935 leg muscle, skeletal muscle USP38.a 4607 to 4838 234 to 1       234/234
(100 %)
4 diff
(98.3 %id)
DA505648 brain USP38.a 4613 to 4938 229 to 554   capped, AAA   326/553
(58 %)
6 diff
(99.0 %id)
D56744   USP38.a 4648 to 4927 1 to 280       280/280
(100 %)
2 diff
(99.3 %id)
AW863371 stomach_normal USP38.a 4662 to 5103 454 to 13       442/460
(96 %)
0 diff
(100 %id)
AA028060 uterus USP38.a 4665 to 4940 301 to 26   AAA   276/346
(79 %)
0 diff
(100 %id)
AI264516 adenocarcinoma, colon USP38.a 4668 to 4924 279 to 23   AAA   257/257
(100 %)
3 diff
(98.9 %id)
D57722   USP38.a 4677 to 4929 1 to 251       251/251
(100 %)
4 diff
(98.5 %id)
N41063 multiple sclerosis lesions USP38.a 4686 to 4924 242 to 1       242/242
(100 %)
9 diff
(96.3 %id)
AI474890 Kidney USP38.a 4697 to 4924 229 to 1       229/229
(100 %)
1 diff
(99.6 %id)
FN053937 breast carcinoma USP38.a 4731 to 4826 99 to 3     Submitted on the opposite strand 97/99
(97 %)
0 diff
(100 %id)
AA830370 germinal center B cell USP38.a 4743 to 4938 227 to 32   AAA   196/196
(100 %)
0 diff
(100 %id)
H90299 liver and spleen USP38.a 4785 to 4901 124 to 8       117/124
(94 %)
0 diff
(100 %id)
AW293752   USP38.a 5042 to 5425 401 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 384/384
(100 %)
1 diff
(99.8 %id)
BC039115 Brain, hippocampus USP38.b 1 to 4132 1 to 4132 exact tiling clone, available from MGC, AAA   4132/4132
(100 %)
3 diff
(100.0 %id)
Z45502 brain, total brain USP38.b 2430 to 2778 1 to 349       349/349
(100 %)
0 diff
(100 %id)
F08122 brain, total brain USP38.b 2430 to 2748 1 to 319       319/319
(100 %)
0 diff
(100 %id)
CR737558   USP38.b 3628 to 4119 505 to 15   AAA   491/491
(100 %)
1 diff
(99.8 %id)
Z41195 brain, total brain USP38.b 3787 to 4119 333 to 1       333/333
(100 %)
0 diff
(100 %id)
F04367 brain, total brain USP38.b 3787 to 4119 333 to 1   tiling clone,   333/333
(100 %)
0 diff
(100 %id)
AK093754 thymus USP38.c 1 to 3382 1 to 3381 exact tiling clone, available from FLJ,   3381/3381
(100 %)
3 diff
(100.0 %id)
AX748288   USP38.c 1 to 3382 1 to 3381 exact     3381/3381
(100 %)
3 diff
(100.0 %id)
BG741747 skin USP38.d-u 1 to 656 1 to 654 exact tiling clone,   654/654
(100 %)
2 diff
(99.7 %id)
AV755383 bone marrow USP38.e-u 1 to 491 50 to 531 K36N tiling clone,   482/531
(90 %)
7 diff
(98.7 %id)
AK091712   Gene USP38, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK126943 brain Gene USP38, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AX747143   Gene USP38, variant not shown         Suspected internal deletion, this clone was ignored    
DB304889 brain Gene USP38, variant not shown         Suspected internal deletion, this clone was ignored    
DA219256 brain Gene USP38, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB310020 hippocampus Gene USP38, variant not shown         This clone was ignored    
DA338926 hippocampus Gene USP38, variant not shown       capped This clone was ignored    
AV713746   Gene USP38, variant not shown         Suspected internal deletion, this clone was ignored    
AV652370 corresponding non cancerous liver tissue Gene USP38, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
N55729   Gene USP38, variant not shown         Suspected internal deletion, this clone was ignored    
DB074928 testis Gene USP38, variant not shown       capped This clone was ignored    
DB340482 testis Gene USP38, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI