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Gene USP31TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
227 supporting clones for gene USP31 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ586135   .a 1 to 4059 1 to 4059 L568P tiling clone,   4059/4059
(100 %)
3 diff
(100.0 %id)
NM_020718.3   .a 1 to 10698 1 to 10698 exact RefSeq,   10698/10698
(100 %)
0 diff
(100 %id)
BF376125 testis_normal .a 1273 to 1606 387 to 58       330/387
(85 %)
3 diff
(99.3 %id)
BM842261 lymph node, stomach .a 1304 to 1777 1 to 474       474/474
(100 %)
2 diff
(99.6 %id)
BM842606 lymph node, stomach .a 1304 to 1938 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
BM850203 lymph node, stomach .a 1304 to 1933 1 to 630       630/630
(100 %)
1 diff
(99.9 %id)
BM844861 lymph node, stomach .a 1304 to 1820 1 to 518       518/518
(100 %)
2 diff
(99.7 %id)
DR001753 fetal brain .a 1311 to 2029 30 to 748   tiling clone,   719/748
(96 %)
3 diff
(99.6 %id)
BG164818 hypernephroma, cell line, Kidney .a 1426 to 2169 1 to 747       747/930
(80 %)
16 diff
(98.3 %id)
BI222913 cervical carcinoma cell line, cervix .a 1581 to 2164 4 to 593       590/593
(99 %)
17 diff
(97.2 %id)
AB033029 brain .a 1876 to 7987 1 to 6111   tiling clone, available from KIAA,   6111/6111
(100 %)
1 diff
(100.0 %id)
BF357196 head_neck .a 2639 to 2947 320 to 11       310/320
(96 %)
0 diff
(100 %id)
BF357189 head_neck .a 2640 to 2972 331 to 1       331/332
(99 %)
12 diff
(96.4 %id)
BF350346 head_neck .a 2851 to 3366 1 to 521       521/521
(100 %)
16 diff
(97.0 %id)
DA499951 brain .a 3003 to 3582 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BX478762   .a 3072 to 3591 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
BG741213 skin .a 3229 to 3804 1 to 587       587/1124
(52 %)
20 diff
(98.3 %id)
DB155307 thymus .a 3234 to 3820 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DB074348 testis .a 3333 to 3867 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BM012077 brain, neuroblastoma, cell line .a 3512 to 4366 44 to 912       869/917
(94 %)
95 diff
(89.7 %id)
TI_59381274   .a 3512 to 4366 139 to 1007       869/916
(94 %)
95 diff
(89.7 %id)
TI_44346493   .a 3727 to 4533 142 to 961       820/1014
(80 %)
38 diff
(96.3 %id)
BI668084 brain, hypothalamus .a 3730 to 4533 1 to 817       817/870
(93 %)
37 diff
(95.8 %id)
DB486456 hypothalamus .a 3735 to 4150 1 to 416       416/416
(100 %)
2 diff
(99.6 %id)
DB503316 hypothalamus .a 3735 to 4217 1 to 485       485/485
(100 %)
3 diff
(99.4 %id)
DA409569 thalamus .a 3858 to 4419 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BE780844 eye, retinoblastoma .a 3866 to 4603 1 to 735       735/1156
(63 %)
18 diff
(98.5 %id)
BE000548 breast_normal .a 3915 to 4220 2 to 305       304/307
(99 %)
9 diff
(97.1 %id)
AA082115   .a 3987 to 4450 1 to 480       480/484
(99 %)
22 diff
(95.5 %id)
DA321329 hippocampus .a 4096 to 4629 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BQ012996 placenta .a 4311 to 4692 400 to 19   AAA   382/382
(100 %)
0 diff
(100 %id)
DA244784 brain .a 4382 to 4957 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
FN062351 breast carcinoma .a 4429 to 4503 1 to 75       75/75
(100 %)
1 diff
(98.7 %id)
AW999530 breast_normal .a 4463 to 4740 16 to 293       278/293
(94 %)
6 diff
(98.0 %id)
DA405469 thalamus .a 4574 to 5116 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA458022 tongue, tumor tissue .a 4595 to 5145 2 to 552   capped   551/553
(99 %)
1 diff
(99.9 %id)
DA458025 tongue, tumor tissue .a 4595 to 5164 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB094725 testis .a 4605 to 5164 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AV725490 hypothalamus .a 4608 to 5261 1 to 654       654/654
(100 %)
5 diff
(99.3 %id)
DB150718 thymus .a 4616 to 5183 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA336995 hippocampus .a 4735 to 5320 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
T92094 liver and spleen .a 4936 to 5426 1 to 509       509/512
(99 %)
14 diff
(97.3 %id)
BQ050792 leiomyosarcoma, uterus .a 5016 to 5872 1 to 865       865/1020
(84 %)
10 diff
(99.1 %id)
AA370437 Prostate .a 5186 to 5468 1 to 284       284/284
(100 %)
4 diff
(98.6 %id)
AW956049   .a 5186 to 5771 1 to 589       589/589
(100 %)
18 diff
(97.0 %id)
DA180269 amygdala .a 5227 to 5811 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA738046   .a 5254 to 6011 2 to 756   capped   755/755
(100 %)
6 diff
(99.3 %id)
CD653804 Embryonic Stem cells .a 5337 to 6142 11 to 815       805/817
(98 %)
4 diff
(99.6 %id)
BE706535 head_neck .a 5403 to 5772 1 to 370       370/378
(97 %)
40 diff
(89.5 %id)
DA389757 thalamus .a 5411 to 5980 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DA103875 cerebellum .a 5428 to 5977 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
BE706718 head_neck .a 5436 to 5772 11 to 348       338/356
(94 %)
11 diff
(97.0 %id)
AA383660 testis .a 5449 to 5776 1 to 329       329/329
(100 %)
6 diff
(98.2 %id)
AW945169   .a 5450 to 6111 1 to 662       662/665
(99 %)
13 diff
(98.1 %id)
AW958776   .a 5453 to 5850 1 to 399       399/399
(100 %)
13 diff
(96.8 %id)
AL700119 human skeletal muscle .a 5493 to 6264 1 to 772       772/772
(100 %)
6 diff
(99.3 %id)
DB012394 esophageal, tumor tissue .a 5511 to 5976 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DB246418 uterus, tumor tissue .a 5547 to 6086 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
BX115399 liver and spleen .a 5557 to 6343 1 to 787       787/787
(100 %)
0 diff
(100 %id)
R07757 liver and spleen .a 5576 to 5803 1 to 228       228/229
(99 %)
2 diff
(99.2 %id)
BE933284 head_neck .a 5590 to 5924 7 to 339       333/342
(97 %)
16 diff
(95.4 %id)
BF088167 head_neck .a 5596 to 5924 24 to 347       324/350
(92 %)
14 diff
(96.0 %id)
DA099786 cerebellum .a 5613 to 6170 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
BF088180 head_neck .a 5614 to 5924 1 to 312       312/315
(99 %)
21 diff
(93.4 %id)
DA336550 hippocampus .a 5618 to 6205 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
BE719158 head_neck .a 5623 to 5924 44 to 347       304/350
(86 %)
6 diff
(98.3 %id)
BF088141 head_neck .a 5626 to 5924 1 to 304       304/307
(99 %)
22 diff
(92.9 %id)
BE933283 head_neck .a 5627 to 5924 15 to 315       301/318
(94 %)
20 diff
(93.8 %id)
BE933282 head_neck .a 5634 to 5924 17 to 306       290/309
(93 %)
17 diff
(94.5 %id)
BF355227 head_neck .a 5638 to 5924 1 to 287       287/290
(98 %)
12 diff
(95.9 %id)
BE719268 head_neck .a 5656 to 5924 1 to 272       272/275
(98 %)
21 diff
(92.4 %id)
H82308 liver and spleen .a 5670 to 6020 1 to 352       352/358
(98 %)
4 diff
(98.9 %id)
BF088172 head_neck .a 5724 to 5924 1 to 197       197/200
(98 %)
9 diff
(95.5 %id)
DN914155   .a 5728 to 6320 1 to 593       593/593
(100 %)
2 diff
(99.7 %id)
AW135083   .a 5738 to 6107 9 to 377     Submitted on the opposite strand 369/377
(97 %)
6 diff
(98.5 %id)
DA193927 amygdala .a 5745 to 6206 2 to 463   capped   462/462
(100 %)
2 diff
(99.6 %id)
AI342753 carcinoid, lung .a 5761 to 6162 1 to 402     Submitted on the opposite strand 402/402
(100 %)
0 diff
(100 %id)
AW340964 carcinoid, lung .a 5761 to 6160 1 to 400     Submitted on the opposite strand 400/400
(100 %)
4 diff
(99.0 %id)
BE326209 carcinoid, lung .a 5772 to 6284 1 to 516     Submitted on the opposite strand 516/516
(100 %)
8 diff
(98.5 %id)
AA102581   .a 5803 to 6394 588 to 1       588/589
(99 %)
8 diff
(98.7 %id)
DA170120 amygdala .a 5845 to 6399 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
FN105051 breast carcinoma .a 5926 to 6015 16 to 106       91/106
(85 %)
6 diff
(94.4 %id)
AA725911   .a 5929 to 6395 467 to 1       467/467
(100 %)
17 diff
(96.4 %id)
AI081360 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5938 to 6393 456 to 1       456/456
(100 %)
0 diff
(100 %id)
DB555449 hypothalamus .a 5939 to 6395 1 to 456     Submitted on the opposite strand 456/457
(99 %)
4 diff
(99.2 %id)
AI493137 Kidney .a 5939 to 6395 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
DB574548 hypothalamus .a 5953 to 6395 1 to 443     Submitted on the opposite strand 443/444
(99 %)
3 diff
(99.4 %id)
T92008 liver and spleen .a 5986 to 6336 354 to 1       354/354
(100 %)
6 diff
(98.4 %id)
AI168312 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5992 to 6388 397 to 1       397/397
(100 %)
0 diff
(100 %id)
DA404732 thalamus .a 6046 to 6595 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AI888599 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 6067 to 6514 474 to 27   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 448/448
(100 %)
1 diff
(99.8 %id)
R07758 liver and spleen .a 6069 to 6390 334 to 6       329/355
(92 %)
0 diff
(100 %id)
AI468650 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6101 to 6393 293 to 1       293/293
(100 %)
0 diff
(100 %id)
BF765896 colon_est .a 6148 to 6678 545 to 13     Submitted on the opposite strand 533/546
(97 %)
0 diff
(100 %id)
W95111 liver and spleen .a 6149 to 6394 259 to 13   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 247/411
(60 %)
1 diff
(99.8 %id)
BF765908 colon_est .a 6151 to 6678 542 to 13     Submitted on the opposite strand 530/542
(97 %)
0 diff
(100 %id)
H82214 liver and spleen .a 6204 to 6385 182 to 1       182/182
(100 %)
0 diff
(100 %id)
AA700284 liver and spleen .a 6210 to 6393 184 to 1       184/184
(100 %)
1 diff
(99.5 %id)
DA325294 hippocampus .a 6218 to 6742 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
T27102   .a 6266 to 6614 1 to 349       349/349
(100 %)
0 diff
(100 %id)
R53157 whole brain .a 6292 to 6715 1 to 428       428/431
(99 %)
8 diff
(98.2 %id)
DA216821 brain .a 6553 to 6992 2 to 442   capped   441/441
(100 %)
4 diff
(99.1 %id)
AA194101 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6586 to 6836 1 to 251       251/251
(100 %)
1 diff
(99.7 %id)
AA150782 uterus .a 6587 to 7029 1 to 445   tiling clone,   445/445
(100 %)
2 diff
(99.6 %id)
FN143842 breast carcinoma .a 6790 to 6851 1 to 59       59/59
(100 %)
2 diff
(96.7 %id)
AV725025 hypothalamus .a 6820 to 7319 1 to 500       500/500
(100 %)
0 diff
(100 %id)
H11980 whole brain .a 6831 to 7269 1 to 445       445/446
(99 %)
9 diff
(98.0 %id)
W84798 liver and spleen .a 6857 to 7287 1 to 432       432/432
(100 %)
7 diff
(98.4 %id)
BG170183 hypernephroma, cell line, Kidney .a 6889 to 7701 1 to 806       806/933
(86 %)
26 diff
(97.3 %id)
BF353140 head_neck .a 6929 to 7201 27 to 300       274/308
(88 %)
3 diff
(99.1 %id)
AL599357   .a 6959 to 7430 1 to 472       472/472
(100 %)
0 diff
(100 %id)
FN113854 breast carcinoma .a 7005 to 7094 89 to 1     Submitted on the opposite strand 89/89
(100 %)
2 diff
(97.8 %id)
TI_149294699   .a 7067 to 7987 991 to 79   AAA   913/1003
(91 %)
13 diff
(98.8 %id)
AW798962 uterus .a 7078 to 7211 153 to 18       136/166
(81 %)
0 diff
(100 %id)
AW798911 uterus .a 7083 to 7318 11 to 239       229/239
(95 %)
6 diff
(97.5 %id)
N80472 liver and spleen .a 7136 to 7388 1 to 254       254/254
(100 %)
4 diff
(98.5 %id)
BF094280 uterus_tumor .a 7197 to 7592 1 to 395       395/395
(100 %)
2 diff
(99.5 %id)
AL599812   .a 7207 to 7788 10 to 591       582/591
(98 %)
6 diff
(99.0 %id)
CN357418 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 7229 to 7447 1 to 219       219/219
(100 %)
1 diff
(99.6 %id)
TI_154032778   .a 7298 to 7987 714 to 25   AAA   690/960
(71 %)
0 diff
(100 %id)
BU683258 lung .a 7309 to 7987 697 to 19   AAA   679/679
(100 %)
0 diff
(100 %id)
BQ948537 leiomyosarcoma, uterus .a 7314 to 7986 1 to 673   AAA   673/673
(100 %)
0 diff
(100 %id)
AI215992 pooled .a 7445 to 7790 348 to 3       346/348
(99 %)
0 diff
(100 %id)
CA313268 Human Lung Epithelial cells, lung .a 7490 to 7987 516 to 19   AAA   498/498
(100 %)
3 diff
(99.4 %id)
AW299656 Kidney .a 7503 to 7987 485 to 1       485/485
(100 %)
3 diff
(99.4 %id)
BF056130 pooled .a 7503 to 7988 491 to 6       486/491
(98 %)
0 diff
(100 %id)
W84743 liver and spleen .a 7541 to 7987 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
DB370655   .a 7542 to 7988 448 to 2       447/448
(99 %)
0 diff
(100 %id)
R53069 whole brain .a 7550 to 7988 452 to 8       445/456
(97 %)
0 diff
(100 %id)
C18896 placenta .a 7553 to 7857 1 to 305       305/305
(100 %)
3 diff
(99.1 %id)
H11981 whole brain .a 7562 to 7987 451 to 20   AAA   432/436
(99 %)
8 diff
(98.2 %id)
AI028351   .a 7569 to 7988 423 to 4       420/423
(99 %)
0 diff
(100 %id)
N63626 liver and spleen .a 7573 to 7987 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AI863764 2 pooled tumors (clear cell type), Kidney .a 7577 to 7988 416 to 3       414/416
(99 %)
0 diff
(100 %id)
AI208782   .a 7585 to 7986 404 to 4       401/413
(97 %)
0 diff
(100 %id)
DB177613 kidney, tumor tissue .a 7595 to 7993 2 to 400   capped   399/399
(100 %)
1 diff
(99.8 %id)
AW014998   .a 7597 to 7987 408 to 18   AAA   391/391
(100 %)
1 diff
(99.8 %id)
BF438820 pooled .a 7604 to 7988 390 to 6       385/390
(98 %)
0 diff
(100 %id)
DA072873 cerebellum .a 7612 to 8194 2 to 584   tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
AI767881 2 pooled tumors (clear cell type), Kidney .a 7614 to 7987 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
AI833177 colon .a 7618 to 7987 370 to 1       370/370
(100 %)
1 diff
(99.8 %id)
AI187852   .a 7709 to 7988 288 to 9       280/288
(97 %)
0 diff
(100 %id)
AA709225   .a 7721 to 7988 270 to 3       268/270
(99 %)
0 diff
(100 %id)
AI783638 Kidney .a 7729 to 7987 269 to 11   AAA   259/259
(100 %)
0 diff
(100 %id)
FN061899 breast carcinoma .a 7735 to 7833 100 to 1     Submitted on the opposite strand 100/100
(100 %)
1 diff
(99.0 %id)
FN069392 breast carcinoma .a 7772 to 7861 1 to 86       86/86
(100 %)
6 diff
(93.1 %id)
AA398774   .a 7835 to 7986 159 to 8       152/159
(95 %)
0 diff
(100 %id)
R05646 whole brain .a 7845 to 7988 152 to 8       145/152
(95 %)
0 diff
(100 %id)
DA904014   .a 7882 to 8434 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB175364 kidney, tumor tissue .a 7891 to 8457 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
AK057491 testis .a 7932 to 9720 1 to 1789   tiling clone, available from FLJ,   1789/1789
(100 %)
4 diff
(99.8 %id)
DB025544 testis .a 7933 to 8487 2 to 559   capped   558/558
(100 %)
5 diff
(99.2 %id)
DA495159 brain .a 8179 to 8737 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA378128 thalamus .a 8247 to 8807 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BG326861 Kidney, renal cell adenocarcinoma .a 8323 to 9020 1 to 704       704/916
(76 %)
30 diff
(96.8 %id)
DA889478   .a 8326 to 8878 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB253101 uterus .a 8332 to 8904 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BI253333 cervical carcinoma cell line, cervix .a 8479 to 9254 1 to 772       772/772
(100 %)
11 diff
(98.6 %id)
FN165352 breast carcinoma .a 8548 to 8636 1 to 88       88/88
(100 %)
6 diff
(93.2 %id)
FN147446 breast carcinoma .a 8549 to 8633 1 to 82       82/83
(98 %)
6 diff
(92.8 %id)
F12863 brain, total brain .a 8575 to 8865 1 to 291       291/291
(100 %)
0 diff
(100 %id)
CD246092 White Matter .a 8595 to 9451 1 to 864   tiling clone,   864/867
(99 %)
8 diff
(99.1 %id)
AI377223 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 8656 to 9161 1 to 505     Submitted on the opposite strand 505/505
(100 %)
3 diff
(99.5 %id)
T75099 whole brain .a 8687 to 8950 1 to 266       266/266
(100 %)
4 diff
(98.5 %id)
DA061378 cerebellum .a 8731 to 9305 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB251404 uterus .a 8733 to 9242 2 to 511   capped   510/510
(100 %)
2 diff
(99.7 %id)
CN290984 embryonic stem cells, DMSO-treated H9 cellline .a 8749 to 9318 10 to 579       570/580
(98 %)
5 diff
(99.2 %id)
DA134181 alzheimer cortex .a 8852 to 9400 2 to 551   capped   550/550
(100 %)
4 diff
(99.3 %id)
DA091195 cerebellum .a 8961 to 9521 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
AI693630 carcinoid, lung .a 9128 to 9701 574 to 1       574/574
(100 %)
0 diff
(100 %id)
DB336494 testis .a 9143 to 9720 578 to 1       578/579
(99 %)
0 diff
(100 %id)
N72435 liver and spleen .a 9177 to 9391 1 to 215       215/215
(100 %)
2 diff
(99.1 %id)
BG778320 adenocarcinoma, Prostate .a 9268 to 9979 1 to 714       714/719
(99 %)
17 diff
(97.7 %id)
AI023468 liver and spleen .a 9305 to 9720 409 to 2       408/417
(97 %)
0 diff
(100 %id)
AA992974   .a 9325 to 9720 399 to 4       396/399
(99 %)
0 diff
(100 %id)
AW975667   .a 9331 to 9722 519 to 128   tiling clone, AAA Submitted on the opposite strand 392/392
(100 %)
1 diff
(99.8 %id)
AI301789 carcinoid, lung .a 9379 to 9701 323 to 1       323/323
(100 %)
1 diff
(99.7 %id)
AA730578 Ewing's sarcoma .a 9382 to 9722 350 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 340/340
(100 %)
1 diff
(99.8 %id)
AI248030 liver and spleen .a 9449 to 9720 273 to 1       273/273
(100 %)
2 diff
(99.3 %id)
CB963435 Blood vessels - aorta, basilar and artery .a 9462 to 10105 1 to 652       652/791
(82 %)
21 diff
(97.4 %id)
AI004388   .a 9469 to 9720 254 to 4       251/254
(98 %)
0 diff
(100 %id)
N42387 melanocyte .a 9472 to 10028 1 to 560   tiling clone,   560/562
(99 %)
5 diff
(99.2 %id)
AL135557 melanoma (MeWo cell line) .a 9535 to 9763 7 to 234     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 228/237
(96 %)
7 diff
(97.1 %id)
CD298716 Blood vessels - aorta, basilar and artery .a 9630 to 10373 1 to 753   tiling clone,   753/767
(98 %)
18 diff
(97.7 %id)
AI689923 carcinoid, lung .a 9779 to 10236 1 to 458     Submitted on the opposite strand 458/458
(100 %)
5 diff
(99.0 %id)
BE467724 carcinoid, lung .a 9779 to 10263 1 to 485     Submitted on the opposite strand 485/485
(100 %)
5 diff
(99.0 %id)
N32479.
matches multiple genes
melanocyte .a 9787 to 10188 1 to 404     also hits gene DNAJC30 404/458
(88 %)
8 diff
(98.3 %id)
N42888 melanocyte .a 9797 to 9979 1 to 183       183/183
(100 %)
1 diff
(99.5 %id)
FN052861 breast carcinoma .a 9831 to 9929 1 to 99       99/99
(100 %)
0 diff
(100 %id)
U52050   .a 9873 to 10338 468 to 1     Submitted on the opposite strand 468/469
(99 %)
5 diff
(99.0 %id)
TI_154030730   .a 9907 to 10686 848 to 84   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 765/782
(97 %)
19 diff
(97.6 %id)
TI_149299042   .a 9911 to 10697 867 to 91   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 777/944
(82 %)
16 diff
(98.4 %id)
CB119981 Liver .a 9920 to 10360 1 to 441       441/441
(100 %)
4 diff
(99.1 %id)
TI_159718284   .a 9922 to 10697 866 to 99   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 768/967
(79 %)
14 diff
(98.6 %id)
CA442585 lung, Lung Focal Fibrosis .a 9976 to 10686 722 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 704/704
(100 %)
9 diff
(98.8 %id)
CB242222 Human Lung Epithelial cells, lung .a 9977 to 10697 738 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 720/720
(100 %)
1 diff
(99.9 %id)
AW893713 nervous_normal .a 9995 to 10319 324 to 1       324/326
(99 %)
7 diff
(97.9 %id)
TI_149275978   .a 9996 to 10691 787 to 94   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 694/955
(72 %)
8 diff
(99.2 %id)
FN086525 breast carcinoma .a 10021 to 10118 1 to 96       96/96
(100 %)
4 diff
(95.9 %id)
BM975531 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 10023 to 10697 692 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 674/674
(100 %)
1 diff
(99.9 %id)
AL135558 melanoma (MeWo cell line) .a 10025 to 10683 675 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 658/660
(99 %)
3 diff
(99.6 %id)
CB852642 Human Lung Epithelial cells, lung .a 10030 to 10697 686 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 668/668
(100 %)
1 diff
(99.9 %id)
AW893855 nervous_normal .a 10058 to 10319 264 to 1       264/264
(100 %)
8 diff
(97.0 %id)
BM718012 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 10074 to 10690 1 to 617   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 617/617
(100 %)
0 diff
(100 %id)
BM968853 lung, Primary Lung Epithelial Cells .a 10110 to 10691 600 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 582/582
(100 %)
0 diff
(100 %id)
AI680725 carcinoid, lung .a 10119 to 10698 580 to 1   tiling clone,   580/580
(100 %)
1 diff
(99.9 %id)
BF939930 brain, glioblastoma (pooled) .a 10121 to 10683 563 to 1       563/563
(100 %)
0 diff
(100 %id)
W67951 heart .a 10149 to 10683 552 to 1       552/557
(99 %)
26 diff
(95.4 %id)
AI922214 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 10170 to 10691 525 to 4       522/525
(99 %)
0 diff
(100 %id)
DB351123 uterus .a 10176 to 10697 522 to 1       522/523
(99 %)
3 diff
(99.5 %id)
BF885927 testis_normal .a 10208 to 10627 7 to 424       418/424
(98 %)
6 diff
(98.6 %id)
AI828419 adenocarcinoma, Pancreas .a 10209 to 10685 483 to 6       478/483
(98 %)
0 diff
(100 %id)
AA249681   .a 10213 to 10391 1 to 180       180/214
(84 %)
10 diff
(95.4 %id)
BF885899 testis_normal .a 10233 to 10641 27 to 427       401/427
(93 %)
6 diff
(98.6 %id)
H97807 melanocyte .a 10247 to 10686 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
N34485.
matches multiple genes
melanocyte .a 10255 to 10697 446 to 1     also hits gene SLC16A7 446/477
(93 %)
5 diff
(99.0 %id)
N23319.
matches multiple genes
melanocyte .a 10256 to 10697 442 to 1     also hits gene DNAJC30 442/442
(100 %)
1 diff
(99.8 %id)
BG289456 bladder, transitional cell papilloma, cell line .a 10284 to 10692 1 to 402   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 402/402
(100 %)
5 diff
(98.8 %id)
AI312539 2 pooled tumors (clear cell type), Kidney .a 10293 to 10687 398 to 4       395/398
(99 %)
0 diff
(100 %id)
N53498 multiple sclerosis lesions .a 10323 to 10686 385 to 14       372/386
(96 %)
0 diff
(100 %id)
AW440572 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 10344 to 10697 354 to 1       354/354
(100 %)
0 diff
(100 %id)
AA995097 pooled .a 10351 to 10688 338 to 1       338/338
(100 %)
0 diff
(100 %id)
R38533 whole brain .a 10368 to 10688 347 to 18       330/370
(89 %)
0 diff
(100 %id)
F10465 brain, total brain .a 10438 to 10689 252 to 1       252/252
(100 %)
0 diff
(100 %id)
AK092790 small intestine .b 1 to 2141 2 to 2142 R224L tiling clone, available from FLJ,   2142/2142
(100 %)
4 diff
(99.9 %id)
AX747732   .b 1 to 2141 2 to 2142 R224L     2142/2142
(100 %)
4 diff
(99.9 %id)
DA921118 small intestine .b 1 to 578 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB331924 small intestine .b 1585 to 2141 559 to 1       559/559
(100 %)
4 diff
(99.3 %id)
BX648357 uterus endothel, primary cell culture .c 1 to 4732 1 to 4731 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 4731/4731
(100 %)
4 diff
(100.0 %id)
BI223925 cervical carcinoma cell line, cervix .d 1 to 784 9 to 800 I10T A24T G124R D125R R126Q ... tiling clone,   792/800
(99 %)
25 diff
(96.9 %id)
CA427443 Cell Line, Chondrosarcoma .d 207 to 775 588 to 19   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 570/588
(96 %)
1 diff
(99.9 %id)
BF512220   .d 281 to 775 512 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 495/512
(96 %)
0 diff
(100 %id)
DB232310 trachea .e-u 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
AA368672 placenta .f-u 1 to 321 323 to 1 Q19P G20R K21Q C22M S23F ... tiling clone,   323/324
(99 %)
3 diff
(99.1 %id)
AK126447 uterus Gene USP31, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK126752 cerebellum Gene USP31, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB300452 cerebellum Gene USP31, variant not shown         Suspected internal deletion, this clone was ignored    
DA120349 cerebellum Gene USP31, variant not shown       capped Suspected internal deletion, this clone was ignored    
CV424893 placenta_normal Gene USP31, variant not shown         Submitted on the opposite strand    
AV658485 corresponding non cancerous liver tissue Gene USP31, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DA666265   Gene USP31, variant not shown       capped      
DB202677 trachea Gene USP31, variant not shown       capped This clone was ignored    
DB348431 trachea Gene USP31, variant not shown         This clone was ignored    
DB271516 uterus Gene USP31, variant not shown       capped      
DB351996 uterus Gene USP31, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC