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Gene USH2ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
26 supporting clones for gene USH2A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX955488   .a 1 to 407 1 to 408   tiling clone,   408/408
(100 %)
4 diff
(99.1 %id)
AY481573   .a 25 to 18907 1 to 18883 exact tiling clone,   18883/18883
(100 %)
0 diff
(100 %id)
NM_206933.2   .a 25 to 18907 1 to 18883 R1486K I2106T RefSeq,   18883/18883
(100 %)
3 diff
(100.0 %id)
BX101912 eye, retina .a 3715 to 4417 1 to 703       703/703
(100 %)
0 diff
(100 %id)
BG204806   .a 5166 to 5391 1 to 226       226/226
(100 %)
9 diff
(96.1 %id)
T84281 liver and spleen .a 15111 to 15445 1 to 339       339/480
(70 %)
5 diff
(99.0 %id)
BQ639715 eye, retina .a 17192 to 17797 1 to 603       603/603
(100 %)
7 diff
(98.9 %id)
TI_151771190   .a 18084 to 18303 108 to 327   fully sequenced,   220/220
(100 %)
1 diff
(99.6 %id)
EL948374 eyeball .a 18221 to 18722 1 to 502       502/502
(100 %)
0 diff
(100 %id)
TI_151748743   .a 18236 to 18311 131 to 57   fully sequenced,   75/131
(57 %)
6 diff
(95.5 %id)
AF055580   .b 1 to 6314 1 to 6314 F479S R1486K tiling clone, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 6314/6314
(100 %)
3 diff
(100.0 %id)
NM_007123.5   .b 1 to 6314 1 to 6314 R1486K RefSeq, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 6314/6314
(100 %)
1 diff
(100.0 %id)
AA017021 eye, retina .b 3704 to 4067 28 to 396       369/401
(92 %)
8 diff
(98.1 %id)
AA016268 eye, retina .b 6000 to 6315 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AA015982 eye, retina .b 6154 to 6313 160 to 1       160/160
(100 %)
0 diff
(100 %id)
DB463718 hippocampus .c 1 to 323 1 to 324   tiling clone,   324/349
(92 %)
24 diff
(93.2 %id)
DB473367.
matches multiple genes
hippocampus .c 1 to 490 1 to 491   tiling clone, also hits gene skoyzybo 491/491
(100 %)
8 diff
(98.4 %id)
BG202244   .c 454 to 1063 1 to 612   tiling clone,   612/787
(77 %)
10 diff
(98.8 %id)
BG204807   .c 455 to 1079 1 to 624   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 624/624
(100 %)
8 diff
(98.8 %id)
BG214355   .c 460 to 1085 16 to 642   tiling clone,   627/644
(97 %)
10 diff
(98.5 %id)
BG192520   .c 863 to 1053 1 to 192       192/192
(100 %)
5 diff
(97.4 %id)
BX953539   .d-u 1 to 662 1 to 662 L6P S9* tiling clone,   662/662
(100 %)
3 diff
(99.6 %id)
BX109297   .e 1 to 617 1 to 617 exact tiling clone, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 617/617
(100 %)
0 diff
(100 %id)
AA446305   .e 1 to 452 1 to 452       452/452
(100 %)
0 diff
(100 %id)
AA446032   .e 454 to 616 163 to 1       163/163
(100 %)
3 diff
(98.2 %id)
AA883599 pooled .f 1 to 257 259 to 3 I47T tiling clone,   257/259
(99 %)
1 diff
(99.7 %id)
AV646446 corresponding non cancerous liver tissue .g 1 to 373 1 to 373 exact tiling clone, Submitted on the opposite strand 373/373
(100 %)
0 diff
(100 %id)
BG197588   .h-u 1 to 358 10 to 363 G10V L11S Q12P P13T Y14P ... tiling clone,   354/363
(97 %)
5 diff
(98.7 %id)
BG192018   Gene USH2A, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI