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Gene USH1CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
167 supporting clones for gene USH1C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_153676.3   .a 1 to 3239 8 to 3246 exact RefSeq,   3246/3246
(100 %)
0 diff
(100 %id)
BC016057 Colon, adenocarcinoma .b 1 to 2155 1 to 2155 E531D tiling clone, available from MGC, AAA   2155/2162
(99 %)
8 diff
(99.7 %id)
TI_1948137281   .b 663 to 1683 1164 to 146       1019/1363
(74 %)
58 diff
(95.8 %id)
TI_1948137976   .b 795 to 1694 1025 to 131       895/1346
(66 %)
29 diff
(97.9 %id)
TI_1948136942   .b 854 to 1683 969 to 138       832/1371
(60 %)
19 diff
(98.7 %id)
TI_1948137280   .b 856 to 1683 969 to 137       833/1057
(78 %)
13 diff
(98.8 %id)
AA121198 colon, tumor .b 1422 to 1622 1 to 204   tiling clone,   204/204
(100 %)
4 diff
(98.1 %id)
AA121174 colon, tumor .b 1855 to 2164 324 to 9   tiling clone,   316/335
(94 %)
0 diff
(100 %id)
AL711953 human skeletal muscle .c 1 to 402 9 to 409       409/409
(100 %)
2 diff
(99.6 %id)
AK225614 renal proximal tubule .c 1 to 2221 8 to 2228 I151N tiling clone, AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 2228/2228
(100 %)
7 diff
(99.7 %id)
AU099718   .c 1 to 294 8 to 300       300/300
(100 %)
9 diff
(97.0 %id)
AU106347   .c 1 to 43 8 to 50       50/50
(100 %)
1 diff
(98.0 %id)
BP275531 Kidney .c 1 to 565 8 to 571       571/571
(100 %)
1 diff
(99.9 %id)
BP276276 Kidney .c 1 to 485 8 to 491       491/577
(85 %)
14 diff
(97.6 %id)
NM_005709.3   .c 1 to 2230 8 to 2237 exact RefSeq,   2237/2237
(100 %)
0 diff
(100 %id)
BP332075 renal proximal tubule .c 1 to 575 8 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA152213 amygdala .c 1 to 529 8 to 537   capped   536/536
(100 %)
2 diff
(99.7 %id)
DA166394 amygdala .c 1 to 523 8 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA382228 thalamus .c 1 to 532 8 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA629892 Kidney .c 1 to 584 8 to 591   tiling clone, capped   590/590
(100 %)
1 diff
(99.9 %id)
DA385258 thalamus .c 1 to 583 4 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA634890 Kidney .c 1 to 575 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AF039700   .c 7 to 2230 1 to 2230 S280N E519D F552L     2230/2236
(99 %)
17 diff
(99.3 %id)
BG821692 adenocarcinoma cell line, colon .c 9 to 598 1 to 603       603/690
(87 %)
24 diff
(96.6 %id)
AB018687 small intestine .c 14 to 2228 1 to 2213 exact     2213/2213
(100 %)
9 diff
(99.6 %id)
DA430155 colon .c 20 to 492 2 to 474   capped   473/473
(100 %)
0 diff
(100 %id)
DA376923 thalamus .c 26 to 571 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BI759447 pooled colon, kidney, stomach .c 27 to 854 1 to 829       829/848
(97 %)
10 diff
(98.9 %id)
TI_57149450   .c 27 to 854 28 to 856       829/875
(94 %)
16 diff
(98.2 %id)
DA538625 Kidney .c 30 to 594 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA371809 thalamus .c 31 to 572 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA634668 Kidney .c 31 to 615 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA922870 small intestine .c 31 to 601 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA631244 Kidney .c 32 to 609 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA920744 small intestine .c 32 to 598 2 to 569   capped   568/573
(99 %)
2 diff
(99.7 %id)
DA627616 Kidney .c 35 to 564 8 to 537   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA372178 thalamus .c 36 to 593 2 to 559   capped   558/558
(100 %)
4 diff
(99.3 %id)
DA282336 corpus callosum .c 38 to 590 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA373209 thalamus .c 38 to 583 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA537457 Kidney .c 38 to 588 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB243337 stomach, tumor tissue .c 38 to 532 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
AU106345   .c 40 to 89 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DA040197 bladder .c 41 to 529 2 to 490   capped   489/489
(100 %)
1 diff
(99.8 %id)
AL697956 human skeletal muscle .c 41 to 605 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
AK290788 Kidney .c 42 to 1847 1 to 1806 E519D     1806/1806
(100 %)
1 diff
(100.0 %id)
BP277056 Kidney .c 42 to 622 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA136622 alzheimer cortex .c 43 to 584 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA427964 colon .c 43 to 597 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA623350 Kidney .c 43 to 577 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA919618 small intestine .c 43 to 607 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
TI_57147264   .c 51 to 775 31 to 749       719/767
(93 %)
15 diff
(98.1 %id)
BI764798 pooled colon, kidney, stomach .c 52 to 775 1 to 719       719/737
(97 %)
16 diff
(97.9 %id)
AU106346   .c 59 to 108 1 to 50       50/50
(100 %)
0 diff
(100 %id)
CR623186 HeLa cells Cot 25-normalized .c 59 to 2200 1 to 2142 exact tiling clone,   2142/2142
(100 %)
0 diff
(100 %id)
AL556078 placenta .c 59 to 1025 1 to 963       963/1031
(93 %)
11 diff
(99.0 %id)
BX344632   .c 59 to 1025 1 to 961       961/985
(97 %)
9 diff
(99.1 %id)
BP223900 colon mucosa .c 60 to 682 1 to 629       629/705
(89 %)
11 diff
(98.5 %id)
TI_1948136939   .c 102 to 870 130 to 900       771/1313
(58 %)
20 diff
(98.5 %id)
TI_1948136940   .c 102 to 739 129 to 768       640/1415
(45 %)
22 diff
(98.5 %id)
TI_1948137278   .c 102 to 860 127 to 885       759/1357
(55 %)
24 diff
(98.3 %id)
TI_1948137279   .c 102 to 868 123 to 893       771/1323
(58 %)
28 diff
(97.9 %id)
TI_1948137623   .c 102 to 598 128 to 624       497/1430
(34 %)
10 diff
(99.4 %id)
TI_1948137624   .c 102 to 672 118 to 690       573/1351
(42 %)
16 diff
(98.9 %id)
TI_1948137974   .c 102 to 833 125 to 868       742/1443
(51 %)
21 diff
(98.6 %id)
CV029029 mixed .c 103 to 687 1 to 585       585/585
(100 %)
0 diff
(100 %id)
DA158774 amygdala .c 253 to 794 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA635877 Kidney .c 453 to 1022 2 to 571   capped   570/572
(99 %)
1 diff
(99.9 %id)
W22160 eye, retina .c 488 to 976 83 to 576       497/636
(78 %)
16 diff
(97.5 %id)
BP223535 colon mucosa .c 520 to 1126 1 to 608       608/640
(95 %)
11 diff
(98.3 %id)
BP223606 colon mucosa .c 520 to 884 1 to 364       364/373
(97 %)
6 diff
(98.4 %id)
EB386144 eye, optic nerve .c 570 to 1353 1 to 784       784/784
(100 %)
3 diff
(99.7 %id)
AI269960 Kidney .c 649 to 1120 473 to 1       473/473
(100 %)
1 diff
(99.8 %id)
BX372117   .c 836 to 1734 895 to 1       895/895
(100 %)
7 diff
(99.3 %id)
BG339147 leiomyosarcoma cell line, uterus .c 876 to 1585 1 to 708       708/708
(100 %)
11 diff
(98.5 %id)
BX370544   .c 920 to 1583 1 to 666       666/779
(85 %)
12 diff
(98.5 %id)
TI_1948137975   .c 978 to 1760 907 to 124       784/1059
(74 %)
5 diff
(99.6 %id)
TI_1948137625   .c 1036 to 1760 857 to 126       732/1106
(66 %)
13 diff
(98.9 %id)
BQ326315 colon_normal .c 1119 to 1419 44 to 349       306/349
(87 %)
13 diff
(96.3 %id)
BU169544 large cell carcinoma, lung .c 1119 to 1935 1 to 823       823/897
(91 %)
9 diff
(99.0 %id)
TI_1948136941   .c 1119 to 1749 769 to 138       632/1231
(51 %)
8 diff
(99.4 %id)
AW934844 denis_drash .c 1150 to 1640 1 to 490       490/490
(100 %)
13 diff
(97.4 %id)
CK005510 brain/CNS, Human Brain - Frontal Cortex .c 1211 to 1702 1 to 493       493/677
(72 %)
11 diff
(98.4 %id)
AL578430 placenta .c 1217 to 2174 953 to 1       862/957
(90 %)
48 diff
(95.0 %id)
BI260792 cervical carcinoma cell line, cervix .c 1281 to 2140 1 to 857       857/857
(100 %)
17 diff
(98.1 %id)
BQ344835 nervous_tumor .c 1302 to 1700 452 to 53       400/452
(88 %)
1 diff
(99.8 %id)
BQ334612 marrow .c 1558 to 1966 8 to 419       412/435
(94 %)
21 diff
(95.2 %id)
BQ344282 nervous_tumor .c 1558 to 1966 8 to 419       412/435
(94 %)
21 diff
(95.2 %id)
AW351654 colon .c 1577 to 1957 1 to 381       381/381
(100 %)
12 diff
(96.9 %id)
AW843500 colon_normal .c 1584 to 1903 39 to 366       328/373
(87 %)
14 diff
(96.3 %id)
AW843547 colon_normal .c 1584 to 1903 39 to 366       328/373
(87 %)
14 diff
(96.3 %id)
TI_151753214   .c 1584 to 2229 749 to 90   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 660/1162
(56 %)
36 diff
(97.0 %id)
BF229829 colon_est .c 1618 to 2013 24 to 419       396/424
(93 %)
13 diff
(97.0 %id)
BE764327 nervous_tumor .c 1620 to 1866 1 to 247       247/315
(78 %)
3 diff
(99.1 %id)
BX344631   .c 1622 to 2200 582 to 1       582/688
(84 %)
10 diff
(98.6 %id)
AW390711 stomach .c 1625 to 2083 465 to 2       464/465
(99 %)
2 diff
(99.6 %id)
BF761128 colon_est .c 1629 to 2013 19 to 399       381/404
(94 %)
17 diff
(95.8 %id)
BG183732   .c 1743 to 2221 1 to 477   AAA   477/484
(98 %)
12 diff
(97.6 %id)
AA860926   .c 1749 to 2221 482 to 11       472/485
(97 %)
0 diff
(100 %id)
AA327309 colon .c 1750 to 1953 3 to 206       204/206
(99 %)
6 diff
(97.1 %id)
AI984995 Kidney .c 1754 to 2221 473 to 8       466/473
(98 %)
0 diff
(100 %id)
DB577399 hypothalamus .c 1755 to 2228 1 to 478     Submitted on the opposite strand 478/478
(100 %)
8 diff
(98.4 %id)
BP393349 pancreatic islet .c 1756 to 2221 1 to 466     Submitted on the opposite strand 466/473
(98 %)
6 diff
(98.8 %id)
AI761354 colon, colon tumor, RER+ .c 1770 to 2228 467 to 4       464/467
(99 %)
0 diff
(100 %id)
BM794803 Ascites, stomach .c 1778 to 2221 1 to 444   AAA   444/451
(98 %)
5 diff
(98.9 %id)
BX099952 adenocarcinoma, Pancreas .c 1782 to 2229 466 to 15   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 452/452
(100 %)
2 diff
(99.6 %id)
BE464037 Kidney .c 1783 to 2221 447 to 10       438/447
(97 %)
0 diff
(100 %id)
AA348243 brain, hippocampus .c 1795 to 2076 1 to 280       280/289
(96 %)
6 diff
(98.0 %id)
AI739238 colon, colon tumor, RER+ .c 1796 to 2228 464 to 28   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 437/437
(100 %)
5 diff
(98.9 %id)
AI628985 Kidney .c 1812 to 2221 411 to 2       410/411
(99 %)
0 diff
(100 %id)
AI629007 Kidney .c 1812 to 2221 411 to 2       410/411
(99 %)
0 diff
(100 %id)
AI989344 brain, three pooled meningiomas .c 1822 to 2221 407 to 8       400/407
(98 %)
0 diff
(100 %id)
AI796741 Kidney .c 1850 to 2229 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
AI272081 Kidney .c 1857 to 2228 385 to 10       376/385
(97 %)
0 diff
(100 %id)
AI453367 adenocarcinoma, Pancreas .c 1858 to 2229 386 to 11   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 376/376
(100 %)
4 diff
(99.0 %id)
AW304132 Kidney .c 1869 to 2225 367 to 7       361/367
(98 %)
0 diff
(100 %id)
AI991419 Kidney .c 1875 to 2230 360 to 1       360/360
(100 %)
4 diff
(98.9 %id)
AI738967 colon, colon tumor, RER+ .c 1893 to 2230 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AI738958 colon, colon tumor, RER+ .c 1893 to 2230 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AA344913 gall bladder .c 1913 to 2221 317 to 8       310/317
(97 %)
0 diff
(100 %id)
AA551799 colon, tumor .c 1925 to 2228 311 to 4       308/311
(99 %)
0 diff
(100 %id)
AW192301 adenocarcinoma, Pancreas .c 1934 to 2221 316 to 29   AAA   288/295
(97 %)
0 diff
(100 %id)
BE463416 Kidney .c 1943 to 2230 293 to 2       292/293
(99 %)
0 diff
(100 %id)
AI270726 colon, moderately-differentiated adenocarcinoma .c 1969 to 2230 272 to 7   tiling clone,   266/272
(97 %)
0 diff
(100 %id)
AI869919 colon, colonic mucosa from 3 patients with Crohn'sdisease .c 1969 to 2229 279 to 13   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 267/267
(100 %)
6 diff
(97.8 %id)
AW013904   .c 1973 to 2229 278 to 18   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 261/261
(100 %)
4 diff
(98.5 %id)
AI783811 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 1985 to 2221 244 to 8       237/244
(97 %)
0 diff
(100 %id)
AI869907 colon, colonic mucosa from 3 patients with Crohn'sdisease .c 2031 to 2229 216 to 13   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 204/204
(100 %)
3 diff
(98.6 %id)
AW845326 colon .c 2046 to 2147 15 to 118       104/118
(88 %)
6 diff
(95.0 %id)
AB006955 small intestine .d 1 to 2278 1 to 2275 R72S A274T tiling clone,   2275/2283
(99 %)
14 diff
(99.4 %id)
AF039699 colon cancer metastasis to lung .e 1 to 2150 1 to 2156 S312N tiling clone,   2156/2162
(99 %)
17 diff
(99.3 %id)
AL045823 testis .f 1 to 773 1 to 772   tiling clone, to resequence,   772/772
(100 %)
1 diff
(99.9 %id)
AW749983 breast .f 27 to 491 56 to 520       465/520
(89 %)
6 diff
(98.9 %id)
BF934971 nervous_tumor .f 223 to 535 313 to 1     Submitted on the opposite strand 313/313
(100 %)
0 diff
(100 %id)
BF756475 colon .f 750 to 1009 1 to 259   tiling clone,   259/259
(100 %)
6 diff
(97.7 %id)
BF928080 nervous_tumor .f 1075 to 1318 245 to 1   tiling clone, Submitted on the opposite strand 245/246
(99 %)
16 diff
(93.5 %id)
AL045824 testis .f 1366 to 1978 613 to 1   tiling clone, to resequence,   613/616
(99 %)
5 diff
(99.2 %id)
BQ932716 large cell carcinoma, lung .g 1 to 872 1 to 883   tiling clone,   883/925
(95 %)
19 diff
(98.0 %id)
AL555966 placenta .g 12 to 772 1 to 763       745/763
(97 %)
14 diff
(98.2 %id)
BI260775 cervical carcinoma cell line, cervix .g 18 to 742 1 to 725       725/725
(100 %)
0 diff
(100 %id)
BQ433907 large cell carcinoma, lung .g 21 to 878 1 to 860   tiling clone,   860/907
(94 %)
20 diff
(97.8 %id)
BQ215821 large cell carcinoma, lung .g 34 to 846 1 to 821   tiling clone,   821/839
(97 %)
11 diff
(98.7 %id)
BI224646 cervical carcinoma cell line, cervix .g 117 to 879 26 to 789   tiling clone,   764/793
(96 %)
11 diff
(98.7 %id)
BX641129 human small intestine .h-u 1 to 1193 1 to 1193 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 1193/1193
(100 %)
0 diff
(100 %id)
BX957176   .i-u 1 to 597 1 to 597 exact tiling clone,   597/597
(100 %)
1 diff
(99.9 %id)
AK024943 colon .j-u 1 to 1578 1 to 1578 F122S tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 1578/1578
(100 %)
5 diff
(99.7 %id)
BP220298 colon .j-u 1 to 560 1 to 560       560/560
(100 %)
4 diff
(99.3 %id)
BG984863 colon_normal .k-u 1 to 431 1 to 431 exact tiling clone,   431/431
(100 %)
0 diff
(100 %id)
BM706929 eye, optic nerve .l 1 to 693 1 to 693 E78D tiling clone,   693/693
(100 %)
9 diff
(98.8 %id)
TI_57219900   .l 57 to 932 28 to 924 D90G W91L I92D D93R L94P ...     873/1161
(75 %)
40 diff
(96.6 %id)
BI757035 brain .l 58 to 932 1 to 896 D90G W91L I92D D93R L94P ... tiling clone,   872/1133
(76 %)
36 diff
(96.9 %id)
BI668985 brain, hypothalamus .l 58 to 880 1 to 827 E78D tiling clone,   827/827
(100 %)
22 diff
(97.4 %id)
DB506089 hypothalamus .l 64 to 468 1 to 405       405/405
(100 %)
6 diff
(98.6 %id)
TI_44345680   .l 65 to 880 88 to 907 E78D     820/907
(90 %)
22 diff
(97.6 %id)
DT220817 brain .l 95 to 702 1 to 606 G29S A63E I64S N65T G66A ... tiling clone,   606/606
(100 %)
10 diff
(98.4 %id)
BE763828 nervous_tumor .m 1 to 411 438 to 28 K2P Q3K N69D tiling clone,   411/444
(92 %)
7 diff
(98.5 %id)
DA260424 caudate nucleus .n 1 to 560 2 to 561 exact tiling clone, to resequence, capped   560/560
(100 %)
0 diff
(100 %id)
BF755343 colon .n 307 to 498 1 to 192       192/192
(100 %)
0 diff
(100 %id)
DB306663 caudate nucleus .n 1267 to 1795 533 to 1   tiling clone, to resequence,   533/533
(100 %)
2 diff
(99.7 %id)
AW888833 nervous_tumor .o 1 to 373 1 to 374 G7S G11R M12D E13R C14S ... tiling clone,   374/378
(98 %)
16 diff
(95.8 %id)
AW062449 colon .o 102 to 284 35 to 221       186/221
(84 %)
11 diff
(95.1 %id)
BF798430 colon_ins .o 102 to 418 22 to 338       322/338
(95 %)
9 diff
(97.4 %id)
BF798442 colon_ins .o 102 to 456 23 to 376       353/376
(93 %)
9 diff
(97.7 %id)
BF333846 colon_est .o 122 to 423 1 to 302       302/307
(98 %)
12 diff
(96.1 %id)
AW300030 Kidney .o 128 to 631 512 to 9   tiling clone,   504/512
(98 %)
0 diff
(100 %id)
BP384853 pancreatic islet .o 135 to 631 1 to 497   tiling clone, Submitted on the opposite strand 497/500
(99 %)
5 diff
(99.0 %id)
BF931410 nervous_tumor .o 150 to 601 452 to 1     Submitted on the opposite strand 452/452
(100 %)
4 diff
(99.2 %id)
AK300936 small intestine Gene USH1C, variant not shown         Suspected internal deletion, this clone was ignored    
BP223647 colon mucosa Gene USH1C, variant not shown         This clone was ignored    
TI_1948137973   Gene USH1C, variant not shown         Suspected internal deletion, this clone was ignored    
DC388331 small intestine Gene USH1C, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j-u, .k-u, .l, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI