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Gene UBE2L3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
460 supporting clones for gene UBE2L3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK299985   .a 1 to 1224 2 to 1225 R73S tiling clone,   1225/1225
(100 %)
3 diff
(99.8 %id)
DA814838   .a 1 to 580 2 to 581   capped   580/582
(99 %)
2 diff
(99.7 %id)
BX428759 neuroblastoma .a 202 to 1130 1 to 925       925/1003
(92 %)
23 diff
(97.8 %id)
BX376299 Neuroblastoma Cot 25-normalized .a 202 to 1224 1 to 1021       1021/1021
(100 %)
12 diff
(98.9 %id)
BX424599 B cells (Ramos cell line) .a 202 to 1011 1 to 806       806/806
(100 %)
7 diff
(99.2 %id)
TI_57152220   .a 202 to 1065 48 to 919       872/919
(94 %)
22 diff
(97.7 %id)
TI_57164342   .a 202 to 823 51 to 672       622/672
(92 %)
7 diff
(99.0 %id)
TI_154186058   .a 202 to 894 131 to 820       690/948
(72 %)
48 diff
(95.0 %id)
TI_151745170.
matches multiple genes
  .a 202 to 844 734 to 91   AAA also hits gene nawshey 644/992
(64 %)
5 diff
(99.5 %id)
BY997515   .a 203 to 772 10 to 579       570/579
(98 %)
6 diff
(99.0 %id)
AW752353 colon .a 205 to 505 305 to 2       304/305
(99 %)
2 diff
(99.4 %id)
BG036543 adenocarcinoma, cell line, Prostate .a 206 to 845 1 to 640       640/665
(96 %)
2 diff
(99.7 %id)
BE275566 melanotic melanoma, skin .a 207 to 858 1 to 650       650/654
(99 %)
3 diff
(99.6 %id)
W84311 heart .a 211 to 517 1 to 302   fully sequenced,   302/302
(100 %)
0 diff
(100 %id)
AA040008 uterus .a 213 to 522 1 to 312   fully sequenced,   312/312
(100 %)
0 diff
(100 %id)
CF265046 Brain glioblastoma .a 213 to 1108 1 to 911       911/912
(99 %)
20 diff
(97.9 %id)
CA308387 Alveolar Macrophage, lung .a 213 to 884 689 to 17   AAA   673/687
(97 %)
1 diff
(99.9 %id)
BU186798 large cell carcinoma, lung .a 216 to 1042 1 to 834   tiling clone,   834/905
(92 %)
10 diff
(98.9 %id)
BM272662 insulinoma, Pancreas .a 240 to 844 620 to 16   AAA   605/605
(100 %)
0 diff
(100 %id)
AW801349 uterus .a 243 to 607 367 to 3       365/367
(99 %)
0 diff
(100 %id)
BU732018.
matches multiple genes
eye, RPE and Choroid .a 244 to 844 619 to 19   AAA also hits gene UBE2L1andUBE2L7P 601/601
(100 %)
2 diff
(99.7 %id)
BM988667 lung, Metastatic Chondrosarcoma .a 246 to 841 614 to 19   AAA   596/612
(97 %)
0 diff
(100 %id)
BG007330 placenta_normal .a 248 to 746 508 to 15       494/525
(94 %)
1 diff
(99.9 %id)
L25347   .a 256 to 357 101 to 1       101/101
(100 %)
3 diff
(97.1 %id)
AW418523 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 273 to 630 358 to 1       358/358
(100 %)
30 diff
(91.7 %id)
TI_149280341   .a 274 to 842 663 to 91   AAA   569/1133
(50 %)
0 diff
(100 %id)
TI_149306254   .a 274 to 844 682 to 113   AAA   570/943
(60 %)
1 diff
(99.9 %id)
BU626764 Alveolar Macrophage, lung .a 294 to 960 683 to 19   AAA   665/674
(98 %)
4 diff
(99.5 %id)
BM827796 stomach .a 296 to 953 1 to 658       658/658
(100 %)
0 diff
(100 %id)
AV722962 hypothalamus .a 300 to 939 633 to 1     Submitted on the opposite strand 633/665
(95 %)
12 diff
(98.2 %id)
TI_154107159   .a 300 to 889 726 to 136   AAA   591/891
(66 %)
54 diff
(94.0 %id)
TI_157611885   .a 305 to 844 622 to 83   AAA   540/549
(98 %)
12 diff
(97.9 %id)
BU730636 eye, RPE and Choroid .a 308 to 844 555 to 19   AAA   537/537
(100 %)
0 diff
(100 %id)
AW801295 uterus .a 331 to 607 279 to 3       277/279
(99 %)
0 diff
(100 %id)
BM509164 insulinoma, Pancreas .a 348 to 960 628 to 16   AAA   613/613
(100 %)
0 diff
(100 %id)
TI_57214931   .a 352 to 962 30 to 654       625/854
(73 %)
31 diff
(96.4 %id)
BE940508 uterus_tumor .a 359 to 560 203 to 2       202/203
(99 %)
5 diff
(97.6 %id)
TI_154139162   .a 365 to 944 80 to 659       580/580
(100 %)
14 diff
(97.6 %id)
BQ001316 lung, Metastatic Chondrosarcoma .a 372 to 960 607 to 19   AAA   589/601
(98 %)
0 diff
(100 %id)
TI_154138091   .a 373 to 965 79 to 672       594/594
(100 %)
5 diff
(99.2 %id)
TI_154009223   .a 375 to 960 698 to 113   AAA   586/688
(85 %)
0 diff
(100 %id)
BF378567 uterus .a 384 to 551 174 to 8       167/174
(95 %)
1 diff
(99.5 %id)
CR609763 Placenta Cot 25-normalized .a 395 to 845 1 to 451       451/451
(100 %)
0 diff
(100 %id)
N59504 liver and spleen .a 398 to 693 1 to 296       296/296
(100 %)
0 diff
(100 %id)
BG940390 blood .a 403 to 844 468 to 27   AAA   442/442
(100 %)
0 diff
(100 %id)
AU144127 whole embryo, mainly head .a 404 to 960 561 to 1       561/563
(99 %)
7 diff
(98.8 %id)
AA040540 uterus .a 414 to 670 1 to 256       256/256
(100 %)
3 diff
(98.9 %id)
AW859184 colon .a 424 to 630 215 to 12       204/215
(94 %)
0 diff
(100 %id)
AW862107 colon .a 424 to 630 207 to 2       206/207
(99 %)
1 diff
(99.6 %id)
EL946173 eyeball .a 426 to 824 20 to 418       399/418
(95 %)
9 diff
(97.9 %id)
W84436 heart .a 456 to 960 502 to 1   fully sequenced,   502/502
(100 %)
0 diff
(100 %id)
BQ549085 insulinoma, Pancreas .a 465 to 950 496 to 7     Submitted on the opposite strand 490/500
(98 %)
2 diff
(99.6 %id)
BE940640 uterus_tumor .a 485 to 570 86 to 1       86/163
(52 %)
2 diff
(98.8 %id)
AI015684 Kidney .a 485 to 967 483 to 1       483/503
(96 %)
4 diff
(99.3 %id)
AI282450 Kidney, renal cell tumor .a 485 to 884 401 to 1       401/489
(82 %)
11 diff
(97.8 %id)
BG153455 Prostate .a 485 to 960 476 to 1       476/496
(95 %)
6 diff
(98.8 %id)
BU730374 eye, RPE and Choroid .a 485 to 970 503 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 486/497
(97 %)
1 diff
(99.8 %id)
AA039974 uterus .a 492 to 960 471 to 1   fully sequenced,   471/471
(100 %)
1 diff
(99.8 %id)
BQ267988 insulinoma, Pancreas .a 495 to 960 482 to 17   AAA   466/466
(100 %)
1 diff
(99.8 %id)
BE702455 nervous_normal .a 498 to 663 188 to 23       166/190
(87 %)
0 diff
(100 %id)
AA046118 heart .a 503 to 772 277 to 1       277/293
(94 %)
10 diff
(96.6 %id)
AA837818 epithelium (cell line), Prostate .a 513 to 959 446 to 1       446/446
(100 %)
1 diff
(99.8 %id)
AV743482.
matches multiple genes
cord Blood .a 562 to 845 1 to 274   AAA also hits gene UBE2L1andUBE2L7P 274/274
(100 %)
9 diff
(96.8 %id)
BQ356028.
matches multiple genes
head_neck .a 573 to 802 256 to 26     also hits gene tervoy 231/256
(90 %)
0 diff
(100 %id)
BQ356031.
matches multiple genes
head_neck .a 573 to 807 265 to 30   tiling clone, also hits gene tervoy 236/265
(89 %)
0 diff
(100 %id)
DW425688.
matches multiple genes
Liver .a 602 to 844 17 to 259   AAA also hits gene UBE2L1andUBE2L7P 243/259
(93 %)
6 diff
(97.7 %id)
BE939664 uterus_tumor .a 607 to 770 184 to 21       164/185
(88 %)
0 diff
(100 %id)
EC572126 Prostate .a 726 to 842 116 to 4       113/120
(94 %)
0 diff
(100 %id)
AA304770 aorta .a 744 to 960 251 to 35   AAA Submitted on the opposite strand 217/217
(100 %)
0 diff
(100 %id)
BX430672.
matches multiple genes
B cells (Ramos cell line) .a 745 to 885 1 to 141     also hits gene UBE2L1andUBE2L7P 141/148
(95 %)
1 diff
(99.4 %id)
BQ365815 placenta_normal .a 752 to 1131 389 to 8       382/389
(98 %)
0 diff
(100 %id)
BQ365824 placenta_normal .a 754 to 1131 394 to 17       378/394
(95 %)
0 diff
(100 %id)
CU013202 Synthetic constructs .b 1 to 480 20 to 499 exact tiling clone,   484/499
(96 %)
9 diff
(98.2 %id)
NM_003347.2   .c 1 to 2907 1 to 2907 exact RefSeq,   2907/2907
(100 %)
1 diff
(100.0 %id)
DA387059 thalamus .c 11 to 615 2 to 606 exact tiling clone, capped   605/605
(100 %)
0 diff
(100 %id)
CD684700 normal nasopharynx .c 40 to 700 32 to 692 exact     661/692
(95 %)
6 diff
(99.2 %id)
DA918051 small intestine .c 43 to 629 2 to 588 exact capped   587/587
(100 %)
0 diff
(100 %id)
DB100628 testis .c 43 to 641 2 to 600 exact capped   599/599
(100 %)
0 diff
(100 %id)
DB264566 uterus .c 44 to 638 2 to 596 exact capped   595/595
(100 %)
0 diff
(100 %id)
DA163860 amygdala .c 46 to 622 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
CB128008 cervix, Uterine .c 47 to 647 1 to 601 exact     601/601
(100 %)
0 diff
(100 %id)
DA538973 Kidney .c 47 to 631 2 to 586 exact capped   585/585
(100 %)
0 diff
(100 %id)
TI_57201869   .c 47 to 823 26 to 816 M8S K9E E10G L11A E12*     789/972
(81 %)
34 diff
(96.6 %id)
DA055984 cerebellum .c 48 to 626 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DA165839 amygdala .c 48 to 625 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA205996 brain .c 48 to 623 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
DA391603 thalamus .c 48 to 633 2 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
CR618384 fetal brain .c 48 to 1797 1 to 1750 exact     1750/1750
(100 %)
0 diff
(100 %id)
BX423373 brain, fetal brain .c 48 to 1100 1 to 1031 K135X     1031/1041
(99 %)
35 diff
(96.7 %id)
BX428887 brain, fetal brain .c 48 to 1011 1 to 960 P88X S107X K135X     960/960
(100 %)
12 diff
(98.8 %id)
BX441106 brain, fetal brain .c 48 to 963 1 to 915 K135X     915/915
(100 %)
3 diff
(99.7 %id)
BX407078 brain, fetal brain .c 48 to 1049 1 to 980 K71X K82X K135X     980/988
(99 %)
33 diff
(96.7 %id)
DA442320 tongue, tumor tissue .c 48 to 644 2 to 598 exact capped   597/597
(100 %)
0 diff
(100 %id)
TI_45216325   .c 48 to 727 130 to 814 exact     685/1260
(54 %)
19 diff
(98.5 %id)
DA692304   .c 48 to 627 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
DA784078 brain .c 48 to 627 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
AU133971 ovary, tumor tissue .c 48 to 755 2 to 712 K145X capped   711/713
(99 %)
8 diff
(98.9 %id)
DA500742 brain .c 51 to 627 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
DB252354 uterus .c 51 to 631 2 to 582 exact capped   581/581
(100 %)
0 diff
(100 %id)
TI_57240744   .c 53 to 969 23 to 941 A2G A3G I14S R15P K16Q ...     919/950
(96 %)
50 diff
(94.8 %id)
TI_44168594   .c 55 to 786 83 to 819 P58T K82* AAA   737/819
(89 %)
17 diff
(98.0 %id)
CR456606   .c 56 to 580 1 to 525 exact     525/525
(100 %)
0 diff
(100 %id)
DB505088 hypothalamus .c 56 to 517 1 to 462       462/462
(100 %)
3 diff
(99.4 %id)
BM785767 myeloma .c 56 to 703 1 to 648 exact     648/648
(100 %)
0 diff
(100 %id)
BX398468 Placenta Cot 25-normalized .c 57 to 1046 1 to 985 exact     985/985
(100 %)
16 diff
(98.4 %id)
DA940734 Spleen .c 57 to 645 2 to 590 exact capped   589/589
(100 %)
0 diff
(100 %id)
TI_154143615   .c 57 to 649 77 to 681 V104G I105S Q106N S107P L108V ...     601/612
(98 %)
34 diff
(94.5 %id)
DA302058 hippocampus .c 58 to 632 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
CR591815 neuroblastoma .c 58 to 1149 1 to 1092 exact     1092/1092
(100 %)
0 diff
(100 %id)
CR607527 Placenta Cot 25-normalized .c 58 to 1210 1 to 1153 exact     1153/1153
(100 %)
0 diff
(100 %id)
BX437861 neuroblastoma .c 58 to 1142 1 to 1081 C17*     1081/1081
(100 %)
19 diff
(98.3 %id)
BX449279 neuroblastoma .c 58 to 998 1 to 941 G49E A50S F51L R52Q I53N ...     941/955
(98 %)
33 diff
(96.6 %id)
BX464984 neuroblastoma .c 58 to 1087 1 to 1030 K135X     1030/1030
(100 %)
6 diff
(99.5 %id)
CF265012 Brain glioblastoma .c 58 to 913 1 to 869 exact     869/869
(100 %)
21 diff
(97.6 %id)
AI816353 brain, frontal lobe .c 59 to 446 1 to 388   fully sequenced,   388/388
(100 %)
0 diff
(100 %id)
BG171756 hypernephroma, cell line, Kidney .c 60 to 745 1 to 689 exact AAA   689/689
(100 %)
7 diff
(99.0 %id)
BQ723433 sympathetic trunk .c 60 to 1015 1 to 951 exact     951/952
(99 %)
14 diff
(98.6 %id)
DR157282 human embryonic stem cells differentiated toan early endodermal cell type .c 60 to 790 1 to 730 exact     730/730
(100 %)
1 diff
(99.9 %id)
CR997302 T-Lymphocytes .c 60 to 973 1 to 915 exact     915/915
(100 %)
2 diff
(99.8 %id)
DA477698   .c 61 to 638 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
BQ581841 insulinoma, Pancreas .c 61 to 509 1 to 449   fully sequenced,   449/449
(100 %)
3 diff
(99.4 %id)
CF265183 Brain glioblastoma .c 61 to 933 1 to 879 exact     879/879
(100 %)
9 diff
(99.0 %id)
EB388066 eye, optic nerve .c 61 to 745 1 to 685 exact     685/685
(100 %)
0 diff
(100 %id)
EL949040 eyeball .c 62 to 625 1 to 564 exact     564/564
(100 %)
3 diff
(99.5 %id)
BQ653324 hepatocellular carcinoma, cell line, Liver .c 62 to 745 1 to 684 exact AAA   684/684
(100 %)
0 diff
(100 %id)
BU541583 carcinoma, cell line, Prostate .c 62 to 967 1 to 913 exact     913/913
(100 %)
10 diff
(99.0 %id)
AJ000519 testis .c 63 to 2907 1 to 2845 exact tiling clone,   2845/2845
(100 %)
1 diff
(100.0 %id)
BM801943 eye, retinoblastoma .c 63 to 1027 1 to 971 exact     971/971
(100 %)
18 diff
(98.2 %id)
BM924821 pooled colon, kidney, stomach .c 63 to 1110 1 to 1061 exact     1061/1098
(96 %)
25 diff
(97.8 %id)
BQ049814 lymph, lymphoma, cell line .c 63 to 992 1 to 944 exact     944/1092
(86 %)
21 diff
(98.1 %id)
CX760669 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 63 to 806 1 to 743 exact   Submitted on the opposite strand 743/743
(100 %)
2 diff
(99.8 %id)
S81003   .c 63 to 745 1 to 683 exact     683/683
(100 %)
0 diff
(100 %id)
DA193572 amygdala .c 64 to 657 2 to 595 exact capped   594/594
(100 %)
0 diff
(100 %id)
DA530989 brain .c 64 to 657 2 to 595 exact capped   594/594
(100 %)
0 diff
(100 %id)
AW675146 cervix .c 64 to 424 1 to 361   fully sequenced,   361/361
(100 %)
0 diff
(100 %id)
DA783818 brain .c 64 to 639 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
DB155425 thymus .c 64 to 642 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
BM153658 leukopheresis .c 65 to 491 1 to 428       428/428
(100 %)
8 diff
(98.2 %id)
AK311761 thalamus .c 66 to 542 1 to 477 exact     477/477
(100 %)
0 diff
(100 %id)
CR616187 B cells (Ramos cell line) .c 66 to 797 1 to 732 exact     732/732
(100 %)
0 diff
(100 %id)
BX407055 B cells (Ramos cell line) .c 66 to 785 1 to 720 K135X AAA   720/720
(100 %)
0 diff
(100 %id)
BX407856 B cells (Ramos cell line) .c 66 to 785 1 to 720 S107F K135X AAA   720/720
(100 %)
4 diff
(99.5 %id)
BX421101 B cells (Ramos cell line) .c 66 to 785 1 to 720 exact AAA   720/720
(100 %)
0 diff
(100 %id)
BX446240 B cells (Ramos cell line) .c 66 to 786 1 to 721 exact     721/721
(100 %)
0 diff
(100 %id)
DB480923 hippocampus .c 66 to 542 1 to 477 exact     477/477
(100 %)
0 diff
(100 %id)
BJ992600 hepatoblastoma .c 66 to 418 1 to 353   fully sequenced,   353/353
(100 %)
0 diff
(100 %id)
BU601175 mixed (pool of 40 RNAs) .c 66 to 745 4 to 686 exact     683/690
(98 %)
8 diff
(98.9 %id)
CB998486 Blood vessels - aorta, basilar and artery .c 66 to 746 4 to 684 exact     681/686
(99 %)
2 diff
(99.8 %id)
TI_57152390   .c 66 to 966 32 to 941 C17M G18W M19D K20E N21K ...     910/941
(96 %)
31 diff
(96.8 %id)
TI_59393072   .c 66 to 640 126 to 708 exact     583/607
(96 %)
13 diff
(97.9 %id)
DA203582 brain .c 67 to 646 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
DA292559 hippocampus .c 67 to 646 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
DA297050 hippocampus .c 67 to 643 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
CR604504 HeLa cells Cot 25-normalized .c 67 to 1159 1 to 1093 exact     1093/1093
(100 %)
0 diff
(100 %id)
DA494604 brain .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA512842 brain .c 67 to 861 2 to 799 exact capped, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 798/799
(99 %)
6 diff
(99.3 %id)
DA532053 brain .c 67 to 670 2 to 605 exact capped   604/604
(100 %)
0 diff
(100 %id)
DA549923   .c 67 to 641 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
BQ641324 eye, normal pigmented retinal epithelium .c 67 to 929 1 to 872 exact     872/933
(93 %)
14 diff
(98.5 %id)
CB160477 Liver .c 67 to 658 1 to 592 exact     592/592
(100 %)
0 diff
(100 %id)
DA642673 Liver .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA655456   .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA662434   .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA877874 Prostate .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DA942204 Spleen .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DB032816 testis .c 67 to 655 2 to 590 exact capped   589/589
(100 %)
0 diff
(100 %id)
DB034104 testis .c 67 to 644 2 to 579 exact capped   578/578
(100 %)
0 diff
(100 %id)
DB120008 thymus .c 67 to 703 2 to 638 exact capped   637/637
(100 %)
0 diff
(100 %id)
DB168385 kidney, tumor tissue .c 67 to 659 2 to 594 exact capped   593/593
(100 %)
0 diff
(100 %id)
DB174824 kidney, tumor tissue .c 67 to 642 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
DB246574   .c 67 to 896 2 to 834 exact capped   833/834
(99 %)
6 diff
(99.3 %id)
AK291083   .c 68 to 1042 1 to 975 E142G     975/975
(100 %)
4 diff
(99.6 %id)
TI_57179539   .c 68 to 870 70 to 871 S4A R5G R6G L7*     802/872
(91 %)
12 diff
(98.7 %id)
DA200657 brain .c 69 to 647 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DA205029 brain .c 69 to 644 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
DA207930 brain .c 69 to 652 2 to 585 exact capped   584/584
(100 %)
0 diff
(100 %id)
DA305127 hippocampus .c 69 to 647 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DA309511 hippocampus .c 69 to 654 2 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
DA427985 colon .c 69 to 647 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
BU602823 mixed (pool of 40 RNAs) .c 69 to 745 5 to 682 exact     678/682
(99 %)
4 diff
(99.5 %id)
DA633755 Kidney .c 69 to 651 2 to 584 exact capped   583/583
(100 %)
0 diff
(100 %id)
DA780465 brain .c 69 to 644 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
DB002891 breast, tumor tissue .c 69 to 647 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DA203403 brain .c 70 to 651 2 to 583 exact capped   582/582
(100 %)
0 diff
(100 %id)
DA482364   .c 70 to 644 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
DA482960   .c 70 to 649 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
BU603225 mixed (pool of 40 RNAs) .c 70 to 909 4 to 852 exact     849/856
(99 %)
21 diff
(97.6 %id)
DA659169   .c 70 to 651 2 to 583 exact capped   582/582
(100 %)
0 diff
(100 %id)
DA848923 placenta .c 70 to 653 2 to 585 exact capped   584/584
(100 %)
0 diff
(100 %id)
BM849500 myeloma .c 70 to 673 3 to 605 exact     603/605
(99 %)
6 diff
(99.1 %id)
DA056746 cerebellum .c 71 to 681 2 to 612 exact capped   611/611
(100 %)
0 diff
(100 %id)
DA199481 brain .c 71 to 652 2 to 583 exact capped   582/582
(100 %)
0 diff
(100 %id)
DA051820   .c 72 to 665 2 to 596 A3G S4Q R5Q R6E L7A ... capped   595/595
(100 %)
6 diff
(99.0 %id)
AV715145   .c 72 to 745 1 to 674 A2G     674/684
(98 %)
9 diff
(98.7 %id)
BE737829 brain, glioblastoma .c 72 to 624 1 to 553 S4A R5G R6G L7*     553/553
(100 %)
5 diff
(99.1 %id)
BQ447151 Knee, Osteoarthritic Cartilage .c 72 to 745 691 to 19 exact AAA   673/673
(100 %)
1 diff
(99.9 %id)
BU625673 cell lines, Enchondroma .c 73 to 745 691 to 19 exact AAA   673/686
(98 %)
0 diff
(100 %id)
CR612269 Placenta Cot 25-normalized .c 76 to 2322 1 to 2247 exact tiling clone,   2247/2247
(100 %)
0 diff
(100 %id)
BX360328 Placenta Cot 25-normalized .c 76 to 1114 1 to 1033 K135X     1033/1053
(98 %)
21 diff
(98.1 %id)
BQ422172 melanotic melanoma, skin .c 76 to 922 1 to 852 exact     852/884
(96 %)
17 diff
(98.1 %id)
BU173165 eye, retinoblastoma .c 77 to 1001 1 to 930 exact     930/930
(100 %)
12 diff
(98.8 %id)
BX346639 Neuroblastoma Cot 25-normalized .c 78 to 625 1 to 548 exact     548/548
(100 %)
3 diff
(99.5 %id)
BM451701 eye, retinoblastoma .c 78 to 918 1 to 847 exact     847/1062
(79 %)
22 diff
(98.0 %id)
DA924146 small intestine .c 78 to 656 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
X92962   .c 78 to 542 1 to 465 exact     465/465
(100 %)
0 diff
(100 %id)
BQ050945 leiomyosarcoma, uterus .c 79 to 874 1 to 797       797/1064
(74 %)
17 diff
(98.5 %id)
BQ777998 Pancreas, Purified pancreatic islet .c 81 to 723 12 to 654       643/654
(98 %)
0 diff
(100 %id)
CN333941 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 82 to 829 6 to 753       748/753
(99 %)
0 diff
(100 %id)
BM558939 eye, retinoblastoma .c 82 to 1121 1 to 1063       1063/1063
(100 %)
35 diff
(96.8 %id)
BM807071 duodenal adenocarcinoma, cell line, small intestine .c 82 to 1087 1 to 1018       1018/1018
(100 %)
17 diff
(98.4 %id)
BQ215482 melanotic melanoma, skin .c 82 to 861 1 to 781   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 781/781
(100 %)
4 diff
(99.5 %id)
TI_57177459   .c 82 to 871 31 to 815       785/816
(96 %)
19 diff
(97.7 %id)
BM547129 brain, hippocampus .c 83 to 879 11 to 813       803/1141
(70 %)
14 diff
(98.8 %id)
BQ889563 dorsal root ganglia .c 83 to 991 1 to 918       918/925
(99 %)
15 diff
(98.4 %id)
CX759099 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 83 to 837 1 to 746     Submitted on the opposite strand 746/753
(99 %)
15 diff
(98.1 %id)
BX337821 Placenta Cot 25-normalized .c 84 to 626 1 to 543       543/543
(100 %)
0 diff
(100 %id)
CR994463 T-Lymphocytes .c 84 to 745 1 to 662   AAA   662/662
(100 %)
0 diff
(100 %id)
BQ423112 melanotic melanoma, skin .c 86 to 931 1 to 849       849/849
(100 %)
4 diff
(99.6 %id)
TI_57149077   .c 86 to 888 33 to 836       804/836
(96 %)
20 diff
(97.7 %id)
TI_57191042   .c 86 to 836 52 to 808       757/837
(90 %)
32 diff
(96.2 %id)
BG334491 melanotic melanoma, skin .c 88 to 727 1 to 640       640/642
(99 %)
1 diff
(99.9 %id)
BQ671681 epidermoid carcinoma, cell line, salivary gland .c 91 to 746 1 to 656       656/673
(97 %)
1 diff
(99.9 %id)
CX786107 human embryonic stem cells .c 93 to 853 1 to 761       761/761
(100 %)
0 diff
(100 %id)
BG260308 bladder, transitional cell papilloma, cell line .c 94 to 745 1 to 651   AAA   651/651
(100 %)
2 diff
(99.7 %id)
BU076476 Pancreas, Purified pancreatic islet .c 94 to 578 4 to 488   fully sequenced,   485/488
(99 %)
0 diff
(100 %id)
TI_57234524   .c 94 to 965 67 to 941       875/941
(92 %)
26 diff
(97.3 %id)
TI_57192313   .c 94 to 746 47 to 703       657/936
(70 %)
10 diff
(99.0 %id)
BG763048 melanotic melanoma, high MDR (cell line), skin .c 95 to 745 1 to 652   AAA   652/652
(100 %)
2 diff
(99.7 %id)
BQ286250 Pancreas, Purified pancreatic islet .c 96 to 576 1 to 481       481/481
(100 %)
0 diff
(100 %id)
BI908761 leukocyte .c 98 to 965 1 to 871       871/871
(100 %)
20 diff
(97.8 %id)
BQ929380 epidermoid carcinoma, cell line, lung .c 98 to 990 1 to 899       899/899
(100 %)
14 diff
(98.5 %id)
CR594871 Placenta Cot 25-normalized .c 103 to 1745 1 to 1643       1643/1643
(100 %)
0 diff
(100 %id)
CR597825 B cells (Ramos cell line) .c 103 to 1159 1 to 1057       1057/1057
(100 %)
0 diff
(100 %id)
CR607714 T cells (Jurkat cell line) Cot10-normalized .c 103 to 1745 1 to 1643       1643/1643
(100 %)
0 diff
(100 %id)
CR608960 Placenta Cot 25-normalized .c 103 to 1537 1 to 1435       1435/1435
(100 %)
0 diff
(100 %id)
CR609123 Placenta Cot 25-normalized .c 103 to 1761 1 to 1659       1659/1659
(100 %)
0 diff
(100 %id)
CR610403 Placenta Cot 25-normalized .c 103 to 1138 1 to 1036       1036/1036
(100 %)
0 diff
(100 %id)
CR611871 neuroblastoma .c 103 to 1818 1 to 1716       1716/1716
(100 %)
0 diff
(100 %id)
CR615420 Placenta Cot 25-normalized .c 103 to 1220 1 to 1118       1118/1118
(100 %)
0 diff
(100 %id)
CR625640 Placenta Cot 25-normalized .c 103 to 1794 1 to 1692       1692/1692
(100 %)
0 diff
(100 %id)
BX407547 neuroblastoma .c 103 to 1156 1 to 1043       1043/1043
(100 %)
21 diff
(98.0 %id)
BX438500 neuroblastoma .c 103 to 990 1 to 880       880/880
(100 %)
20 diff
(97.8 %id)
BX428219 neuroblastoma .c 103 to 1159 1 to 1044       1044/1044
(100 %)
19 diff
(98.2 %id)
BX446234 B cells (Ramos cell line) .c 103 to 1041 1 to 941       941/941
(100 %)
5 diff
(99.5 %id)
BX462159 B cells (Ramos cell line) .c 103 to 1142 1 to 1037       1037/1045
(99 %)
22 diff
(97.9 %id)
BX328693 Placenta Cot 25-normalized .c 103 to 1012 1 to 913       913/913
(100 %)
5 diff
(99.5 %id)
BX360947 Placenta Cot 25-normalized .c 103 to 990 1 to 878       878/886
(99 %)
13 diff
(98.6 %id)
BX367690 Placenta Cot 25-normalized .c 103 to 879 1 to 777       777/777
(100 %)
25 diff
(96.8 %id)
BX371161 Placenta Cot 25-normalized .c 103 to 1060 1 to 945       945/945
(100 %)
20 diff
(97.9 %id)
BJ992601 hepatoblastoma .c 357 to 712 356 to 1   fully sequenced,   356/356
(100 %)
1 diff
(99.8 %id)
AW674525 cervix .c 394 to 747 354 to 1   fully sequenced,   354/354
(100 %)
1 diff
(99.8 %id)
AI816274 brain, frontal lobe .c 416 to 869 454 to 1   fully sequenced,   454/454
(100 %)
2 diff
(99.6 %id)
BQ581522 insulinoma, Pancreas .c 479 to 876 398 to 1   fully sequenced,   398/398
(100 %)
2 diff
(99.5 %id)
BU076225 Pancreas, Purified pancreatic islet .c 548 to 861 314 to 1   fully sequenced,   314/314
(100 %)
0 diff
(100 %id)
BQ269609 Pancreas, Purified pancreatic islet .c 1410 to 2021 613 to 2       612/613
(99 %)
0 diff
(100 %id)
NR_028437.1   .d 1 to 2811 1 to 2811 exact RefSeq, tiling clone,   2811/2811
(100 %)
1 diff
(100.0 %id)
BG701206 brain, hippocampus .d 42 to 652 1 to 621       621/785
(79 %)
30 diff
(96.2 %id)
DC331906 hippocampus .d 45 to 607 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC353334 brain .d 47 to 618 1 to 572       572/572
(100 %)
2 diff
(99.7 %id)
DC367682   .d 47 to 609 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC367686   .d 47 to 628 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC375903 brain .d 47 to 545 1 to 505       505/505
(100 %)
8 diff
(98.5 %id)
DC385659 skeletal muscle .d 47 to 596 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
BE093601 breast .d 52 to 470 419 to 1     Submitted on the opposite strand 419/420
(99 %)
0 diff
(100 %id)
DC375220 brain .d 56 to 629 1 to 574       574/574
(100 %)
0 diff
(100 %id)
AA101831 uterus .d 57 to 511 1 to 457       457/457
(100 %)
9 diff
(98.1 %id)
BF791537 adrenal cortex carcinoma, cell line, adrenal gland .d 60 to 658 1 to 601   AAA   601/601
(100 %)
7 diff
(98.9 %id)
DC314625 amygdala .d 63 to 606 1 to 544       544/544
(100 %)
2 diff
(99.7 %id)
DC319408 brain .d 63 to 643 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BG613073 embryonal carcinoma, testis .d 63 to 658 1 to 603       603/661
(91 %)
20 diff
(97.0 %id)
DC374769 brain .d 63 to 638 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DC375544 brain .d 65 to 651 1 to 588       588/588
(100 %)
4 diff
(99.4 %id)
DC376104 brain .d 66 to 632 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC399829 testis .d 66 to 611 1 to 546       546/546
(100 %)
0 diff
(100 %id)
DC421785 uterus .d 66 to 619 1 to 554       554/554
(100 %)
0 diff
(100 %id)
DC316776 amygdala .d 69 to 624 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DC353449 brain .d 69 to 637 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
DC354249 brain .d 69 to 635 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC365518   .d 69 to 602 1 to 534       534/534
(100 %)
0 diff
(100 %id)
DC298220 adrenal gland .d 70 to 613 1 to 544       544/544
(100 %)
0 diff
(100 %id)
AK293179 adrenal gland .d 70 to 1126 1 to 1056       1056/1056
(100 %)
3 diff
(99.8 %id)
CR602038 T cells (Jurkat cell line) Cot10-normalized .d 132 to 1145 1 to 1014       1014/1014
(100 %)
0 diff
(100 %id)
BX328815   .d 132 to 1063 1 to 925       925/931
(99 %)
17 diff
(98.2 %id)
BX346455   .d 132 to 1144 1 to 992       992/992
(100 %)
41 diff
(95.9 %id)
BX388483   .d 132 to 1046 1 to 910       910/939
(96 %)
12 diff
(98.8 %id)
BX400547   .d 132 to 882 1 to 750       750/750
(100 %)
1 diff
(99.9 %id)
TI_57214874   .d 157 to 935 28 to 808       781/809
(96 %)
13 diff
(98.4 %id)
TI_57214994   .d 157 to 1044 68 to 959       892/988
(90 %)
37 diff
(96.3 %id)
CV809151 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 197 to 940 1 to 745       745/745
(100 %)
8 diff
(99.0 %id)
BM463318 embryonal carcinoma, cell line, testis .d 224 to 1126 1 to 913       913/991
(92 %)
21 diff
(97.9 %id)
CR607739 placenta .d 247 to 1660 1 to 1414       1414/1414
(100 %)
0 diff
(100 %id)
BU950032 Pancreas, Purified pancreatic islet .d 256 to 892 1 to 637       637/637
(100 %)
0 diff
(100 %id)
CB177376 Pancreas, Purified pancreatic islet .d 284 to 694 1 to 411       411/411
(100 %)
0 diff
(100 %id)
CR602465 Placenta Cot 25-normalized .d 290 to 2230 1 to 1941   tiling clone,   1941/1941
(100 %)
0 diff
(100 %id)
BX451157 neuroblastoma .d 290 to 1197 1 to 908       908/934
(97 %)
33 diff
(96.5 %id)
BX429765 neuroblastoma .d 297 to 1031 9 to 745       737/828
(89 %)
42 diff
(95.0 %id)
BX451156 neuroblastoma .d 297 to 1199 1 to 909       909/913
(99 %)
30 diff
(96.8 %id)
BX326141 Placenta Cot 25-normalized .d 297 to 1036 742 to 1       742/749
(99 %)
8 diff
(99.0 %id)
CD616913   .d 314 to 1058 755 to 9       747/755
(98 %)
0 diff
(100 %id)
BX347959 Placenta Cot 25-normalized .d 387 to 1169 1 to 788       788/800
(98 %)
25 diff
(96.9 %id)
BX346972 Placenta Cot 25-normalized .d 402 to 1246 6 to 850       845/853
(99 %)
17 diff
(98.1 %id)
BX325963 Placenta Cot 25-normalized .d 520 to 1387 1 to 869       869/871
(99 %)
12 diff
(98.7 %id)
BX450185 neuroblastoma .d 559 to 1448 1 to 889       889/890
(99 %)
17 diff
(98.1 %id)
BX428380 neuroblastoma .d 561 to 1537 1 to 949       949/972
(97 %)
51 diff
(94.8 %id)
TI_57190341   .d 577 to 1266 47 to 736       690/691
(99 %)
4 diff
(99.5 %id)
BX348034 Placenta Cot 25-normalized .d 582 to 1443 1 to 857       857/908
(94 %)
38 diff
(95.9 %id)
BX407294 B cells (Ramos cell line) .d 583 to 1421 1 to 836       836/951
(87 %)
27 diff
(97.2 %id)
BX367927 Placenta Cot 25-normalized .d 583 to 1466 1 to 882       882/882
(100 %)
22 diff
(97.6 %id)
BX398467 Placenta Cot 25-normalized .d 590 to 1672 1067 to 1       1067/1079
(98 %)
44 diff
(96.0 %id)
BX449504 brain, fetal brain .d 592 to 1496 1 to 895       895/981
(91 %)
43 diff
(95.7 %id)
BX367905 Placenta Cot 25-normalized .d 596 to 1441 1 to 846       846/846
(100 %)
6 diff
(99.3 %id)
TI_59383914   .d 610 to 1504 56 to 957       902/903
(99 %)
23 diff
(97.5 %id)
BX428758 neuroblastoma .d 614 to 1687 1059 to 1       1059/1079
(98 %)
58 diff
(94.7 %id)
BX462158 B cells (Ramos cell line) .d 619 to 1584 989 to 35       955/1021
(93 %)
0 diff
(100 %id)
BX450572 neuroblastoma .d 623 to 1426 1 to 800       800/909
(88 %)
25 diff
(97.3 %id)
BX449772 neuroblastoma .d 659 to 1660 1001 to 15       987/1003
(98 %)
0 diff
(100 %id)
BX423372 brain, fetal brain .d 668 to 1662 973 to 1       973/976
(99 %)
52 diff
(94.7 %id)
BX464983 neuroblastoma .d 676 to 1689 1006 to 1       1006/1015
(99 %)
13 diff
(98.8 %id)
TI_57240149   .d 686 to 1534 33 to 872       840/877
(95 %)
14 diff
(98.5 %id)
BX428886 brain, fetal brain .d 700 to 1677 975 to 1       975/991
(98 %)
56 diff
(94.4 %id)
BX449278 neuroblastoma .d 701 to 1663 985 to 26       960/1069
(89 %)
0 diff
(100 %id)
CA428675 Cell Line, Chondrosarcoma .d 715 to 1386 41 to 712     Submitted on the opposite strand 672/715
(93 %)
9 diff
(98.8 %id)
BX450704 brain, fetal brain .d 716 to 1626 1 to 909       909/910
(99 %)
20 diff
(97.9 %id)
BX347156 Placenta Cot 25-normalized .d 723 to 1574 856 to 5       852/856
(99 %)
0 diff
(100 %id)
BX328692 Placenta Cot 25-normalized .d 725 to 1578 975 to 131       845/975
(86 %)
0 diff
(100 %id)
BX347365   .d 734 to 1627 1 to 890       890/901
(98 %)
24 diff
(97.4 %id)
BX348101   .d 734 to 1071 1 to 336       336/344
(97 %)
17 diff
(95.1 %id)
BX348102   .d 734 to 1177 1 to 440       440/440
(100 %)
10 diff
(97.8 %id)
BX348008 Placenta Cot 25-normalized .d 743 to 1641 1 to 896       896/896
(100 %)
31 diff
(96.6 %id)
BX409429 brain, fetal brain .d 744 to 1635 1 to 889       889/896
(99 %)
34 diff
(96.3 %id)
BX346525   .d 744 to 1722 1 to 972       972/972
(100 %)
39 diff
(96.0 %id)
CA438143 lung, Metastatic Chondrosarcoma .d 744 to 1444 12 to 712     Submitted on the opposite strand 701/712
(98 %)
6 diff
(99.2 %id)
BX446233 B cells (Ramos cell line) .d 749 to 1692 945 to 1       945/945
(100 %)
15 diff
(98.5 %id)
BX424490 B cells (Ramos cell line) .d 753 to 1670 928 to 22       907/1062
(85 %)
21 diff
(98.1 %id)
BU196105 hepatocellular carcinoma, cell line, Liver .d 767 to 1834 1 to 1083       1083/1095
(98 %)
44 diff
(96.0 %id)
TI_227715294   .d 770 to 1704 1009 to 93   AAA   917/1000
(91 %)
27 diff
(97.3 %id)
BX348047 Placenta Cot 25-normalized .d 778 to 1555 1 to 783       783/873
(89 %)
6 diff
(99.4 %id)
BX368619 Neuroblastoma Cot 25-normalized .d 787 to 1346 1 to 557       557/583
(95 %)
23 diff
(96.1 %id)
BX368618 Neuroblastoma Cot 25-normalized .d 788 to 1296 1 to 506       506/526
(96 %)
29 diff
(94.5 %id)
BX388825 Neuroblastoma Cot 25-normalized .d 790 to 1681 1 to 899       899/899
(100 %)
39 diff
(95.7 %id)
BX388826 Neuroblastoma Cot 25-normalized .d 790 to 1692 1 to 887       887/916
(96 %)
55 diff
(94.0 %id)
BX368620 Neuroblastoma Cot 25-normalized .d 797 to 1440 1 to 651       651/767
(84 %)
17 diff
(97.8 %id)
TI_154126457   .d 799 to 1715 975 to 80   AAA   896/967
(92 %)
26 diff
(97.4 %id)
BX347203   .d 811 to 1690 1 to 878       878/878
(100 %)
12 diff
(98.7 %id)
BX347204   .d 821 to 1503 10 to 692       683/738
(92 %)
29 diff
(96.1 %id)
BX330893   .d 824 to 1652 855 to 30       826/855
(96 %)
0 diff
(100 %id)
TI_159696499   .d 844 to 1727 959 to 86   AAA   874/997
(87 %)
22 diff
(97.8 %id)
ES314280 occipital scalp hair, skin .d 879 to 1070 1 to 190       190/190
(100 %)
3 diff
(98.5 %id)
BX430394 neuroblastoma .d 892 to 1718 1 to 828       828/828
(100 %)
8 diff
(99.1 %id)
BX408587 neuroblastoma .d 900 to 1722 1 to 825       825/826
(99 %)
30 diff
(96.4 %id)
BX455071 brain, fetal brain .d 912 to 1701 794 to 1       794/876
(90 %)
39 diff
(95.6 %id)
TI_154023419   .d 917 to 1715 874 to 76   AAA   799/1086
(73 %)
38 diff
(96.6 %id)
BM799308 Ascites, stomach .d 928 to 1513 590 to 5     Submitted on the opposite strand 586/590
(99 %)
0 diff
(100 %id)
TI_154102354   .d 934 to 1709 851 to 82   AAA   770/794
(96 %)
14 diff
(98.3 %id)
BX330443 Placenta Cot 25-normalized .d 939 to 1710 780 to 1       780/902
(86 %)
26 diff
(97.2 %id)
BX368474 Placenta Cot 25-normalized .d 942 to 1452 513 to 1       513/783
(65 %)
9 diff
(98.9 %id)
BX428218 neuroblastoma .d 955 to 1722 755 to 1       755/837
(90 %)
33 diff
(96.1 %id)
BX326652 Placenta Cot 25-normalized .d 965 to 1794 844 to 18       827/905
(91 %)
0 diff
(100 %id)
BX428213 neuroblastoma .d 981 to 1722 738 to 1       738/942
(78 %)
28 diff
(97.1 %id)
BM730052 insulinoma, Pancreas .d 981 to 1518 8 to 545       538/545
(98 %)
6 diff
(98.9 %id)
BM743542 Ascites, stomach .d 981 to 1563 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BG255126 adenocarcinoma, cell line, Prostate .d 983 to 1741 1 to 761       761/1102
(69 %)
23 diff
(98.0 %id)
CD365772 Alveolar Macrophage, lung .d 1001 to 1704 720 to 17   AAA   704/704
(100 %)
1 diff
(99.9 %id)
TI_154171250   .d 1007 to 1781 80 to 860       781/905
(86 %)
67 diff
(92.6 %id)
ES311705 frontal balding hair, skin .d 1033 to 1247 1 to 214       214/214
(100 %)
2 diff
(99.1 %id)
TI_151809984   .d 1037 to 1701 75 to 738       664/1027
(64 %)
27 diff
(97.4 %id)
BU623864 cell lines, Enchondroma .d 1048 to 1719 690 to 19   AAA   672/672
(100 %)
0 diff
(100 %id)
TI_154136096   .d 1080 to 1722 739 to 95       645/739
(87 %)
0 diff
(100 %id)
AW007388 anaplastic oligodendroglioma, brain .d 1083 to 1685 603 to 1       603/603
(100 %)
0 diff
(100 %id)
BX328691 Placenta Cot 25-normalized .d 1119 to 1722 603 to 1       603/694
(86 %)
25 diff
(96.4 %id)
FN060205 breast carcinoma .d 1123 to 1221 100 to 1     Submitted on the opposite strand 100/100
(100 %)
1 diff
(99.0 %id)
BX326135 Placenta Cot 25-normalized .d 1127 to 1974 860 to 10       851/861
(98 %)
17 diff
(98.1 %id)
BM466663 eye, retinoblastoma .d 1168 to 2017 1 to 856       856/953
(89 %)
11 diff
(98.9 %id)
BX360327 Placenta Cot 25-normalized .d 1175 to 2209 1041 to 18       1024/1061
(96 %)
0 diff
(100 %id)
CU454349 epidermis .d 1188 to 1915 744 to 17     Submitted on the opposite strand 728/753
(96 %)
0 diff
(100 %id)
BX449274 neuroblastoma .d 1193 to 1657 473 to 1       473/519
(91 %)
29 diff
(94.5 %id)
BF811229 colon_ins .d 1197 to 1314 124 to 10     Submitted on the opposite strand 115/124
(92 %)
0 diff
(100 %id)
BI013792 lung_tumor .d 1197 to 1521 333 to 10       324/333
(97 %)
0 diff
(100 %id)
BU949736 Pancreas, Purified pancreatic islet .d 1200 to 1726 527 to 1       527/527
(100 %)
0 diff
(100 %id)
CU447375 epidermis .d 1203 to 1586 1 to 386       386/392
(98 %)
15 diff
(96.2 %id)
BE170226 head_neck .d 1213 to 1455 439 to 197     Submitted on the opposite strand 243/440
(55 %)
0 diff
(100 %id)
BE811907 amnion_normal .d 1218 to 1482 278 to 13       266/333
(79 %)
0 diff
(100 %id)
BI031409 marrow .d 1218 to 1500 293 to 6       288/293
(98 %)
0 diff
(100 %id)
BE075834 breast .d 1232 to 1582 351 to 1     Submitted on the opposite strand 351/351
(100 %)
1 diff
(99.8 %id)
DB549730 hippocampus .d 1253 to 1716 1 to 464     Submitted on the opposite strand 464/469
(98 %)
1 diff
(99.8 %id)
CR606832 Neuroblastoma Cot 25-normalized .d 1267 to 1706 1 to 440       440/440
(100 %)
0 diff
(100 %id)
BQ069478 brain, neuroblastoma, cell line .d 1268 to 2128 1 to 871       871/1056
(82 %)
33 diff
(96.9 %id)
DA293685 hippocampus .d 1298 to 1874 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CB068460 Pancreas, Purified pancreatic islet .d 1310 to 1726 417 to 1       417/417
(100 %)
0 diff
(100 %id)
FN147437 breast carcinoma .d 1367 to 1467 102 to 1     Submitted on the opposite strand 102/102
(100 %)
1 diff
(99.1 %id)
FN068046 breast carcinoma .d 1379 to 1479 100 to 1     Submitted on the opposite strand 100/100
(100 %)
2 diff
(98.0 %id)
CR611646 Neuroblastoma Cot 25-normalized .d 1392 to 2777 1 to 1386       1386/1386
(100 %)
0 diff
(100 %id)
AW894167 nervous_normal .d 1398 to 1574 180 to 7       174/180
(96 %)
0 diff
(100 %id)
TI_59387630   .d 1445 to 1900 166 to 619       454/523
(86 %)
3 diff
(99.5 %id)
AW364003 colon .d 1499 to 1850 360 to 9       352/360
(97 %)
5 diff
(98.7 %id)
AW364006 colon .d 1499 to 1850 359 to 9       351/359
(97 %)
0 diff
(100 %id)
BF809599 colon_ins .d 1521 to 1825 349 to 42     Submitted on the opposite strand 308/349
(88 %)
0 diff
(100 %id)
CA310332 Alveolar Macrophage, lung .d 1607 to 2263 676 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 658/658
(100 %)
1 diff
(99.9 %id)
BM990069 lung, Lung Focal Fibrosis .d 1652 to 2225 1 to 573     Submitted on the opposite strand 573/573
(100 %)
4 diff
(99.4 %id)
BX337820 Placenta Cot 25-normalized .d 1665 to 2230 567 to 1       567/567
(100 %)
3 diff
(99.5 %id)
BX325530   .d 1675 to 2648 1 to 960       960/1033
(92 %)
41 diff
(96.1 %id)
CR593455 Neuroblastoma Cot 25-normalized .d 1706 to 2778 1 to 1073       1073/1073
(100 %)
0 diff
(100 %id)
BX394378 Neuroblastoma Cot 25-normalized .d 1706 to 2236 1 to 524   fully sequenced,   524/524
(100 %)
0 diff
(100 %id)
FN135676 breast carcinoma .d 1707 to 1815 108 to 1     Submitted on the opposite strand 108/108
(100 %)
3 diff
(97.3 %id)
BU145533 melanotic melanoma, cell line, skin .d 1747 to 2550 1 to 815       815/950
(85 %)
21 diff
(97.8 %id)
BX371160 Placenta Cot 25-normalized .d 1749 to 2796 1043 to 1       1043/1048
(99 %)
14 diff
(98.7 %id)
BX341950   .d 1804 to 2779 971 to 1       971/971
(100 %)
11 diff
(98.9 %id)
TI_149285109   .d 2032 to 2811 856 to 90   AAA   767/1087
(70 %)
17 diff
(98.5 %id)
TI_149314481   .d 2035 to 2807 858 to 91   AAA   768/927
(82 %)
12 diff
(98.8 %id)
TI_159715081   .d 2035 to 2811 876 to 105   AAA   772/961
(80 %)
7 diff
(99.3 %id)
BU179455 epithelioid carcinoma, Pancreas .d 2062 to 2811 795 to 40   AAA Submitted on the opposite strand 756/858
(88 %)
11 diff
(98.8 %id)
TI_154020106   .d 2103 to 2809 798 to 93       706/801
(88 %)
0 diff
(100 %id)
CB306116 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2111 to 2807 712 to 17   AAA   696/696
(100 %)
1 diff
(99.9 %id)
CB321953 Human Lung Epithelial cells, lung .d 2113 to 2811 718 to 19   AAA   700/703
(99 %)
1 diff
(99.9 %id)
BQ009457 Chondrosarcoma, Left Pubic Bone .d 2133 to 2811 696 to 19   AAA   678/678
(100 %)
1 diff
(99.9 %id)
BU680751 lung .d 2139 to 2811 688 to 19   AAA   670/670
(100 %)
4 diff
(99.5 %id)
TI_153990344   .d 2145 to 2811 755 to 90   AAA   666/666
(100 %)
26 diff
(96.1 %id)
CB243722 Human Lung Epithelial cells, lung .d 2145 to 2807 679 to 17   AAA   663/663
(100 %)
0 diff
(100 %id)
AA287194 ovarian tumor, ovary .d 2156 to 2539 1 to 382   fully sequenced,   382/382
(100 %)
0 diff
(100 %id)
BX371159 Placenta Cot 25-normalized .d 2176 to 2811 636 to 1       636/789
(80 %)
47 diff
(94.1 %id)
BX329686 Neuroblastoma Cot 25-normalized .d 2180 to 2799 633 to 8       626/916
(68 %)
0 diff
(100 %id)
BQ013690 placenta .d 2182 to 2807 640 to 16   AAA   625/625
(100 %)
3 diff
(99.6 %id)
BX394377 Neuroblastoma Cot 25-normalized .d 2206 to 2778 566 to 1   fully sequenced,   566/566
(100 %)
3 diff
(99.5 %id)
BM511706 insulinoma, Pancreas .d 2253 to 2811 580 to 22   AAA   559/559
(100 %)
1 diff
(99.9 %id)
BX392963 Placenta Cot 25-normalized .d 2289 to 2809 521 to 1       521/780
(66 %)
26 diff
(96.7 %id)
AW884244 ovary .d 2302 to 2742 441 to 1       441/441
(100 %)
6 diff
(98.7 %id)
TI_151713227   .d 2305 to 2811 590 to 81   AAA   510/1166
(43 %)
28 diff
(97.6 %id)
BE244492 leukopheresis .d 2339 to 2809 473 to 3       471/473
(99 %)
0 diff
(100 %id)
BM688080 eye, human retina .d 2349 to 2807 1 to 459   fully sequenced, AAA   459/459
(100 %)
2 diff
(99.6 %id)
BE243732 leukopheresis .d 2486 to 2809 326 to 3       324/326
(99 %)
0 diff
(100 %id)
AA284490 ovarian tumor, ovary .d 2509 to 2807 299 to 1   fully sequenced,   299/299
(100 %)
2 diff
(99.4 %id)
BU726802 eye, human retina .d 2542 to 2805 282 to 19   fully sequenced, AAA   264/264
(100 %)
0 diff
(100 %id)
BE246816 leukopheresis .d 2586 to 2809 226 to 3       224/226
(99 %)
0 diff
(100 %id)
NR_028436.1   .e 1 to 3016 1 to 3016 exact RefSeq, tiling clone,   3016/3016
(100 %)
1 diff
(100.0 %id)
CD690076 normal nasopharynx .e 40 to 531 16 to 507       492/507
(97 %)
7 diff
(98.7 %id)
BG717715 testis .e 47 to 840 1 to 800       800/800
(100 %)
28 diff
(96.5 %id)
BI464139 testis .e 47 to 853 1 to 814       814/853
(95 %)
25 diff
(97.1 %id)
BG940391 blood .e 51 to 363 1 to 313       313/313
(100 %)
1 diff
(99.7 %id)
BF212112 bone marrow, from chronic myelogenous leukemia .e 52 to 735 1 to 690       690/863
(79 %)
28 diff
(96.8 %id)
AV761137 bone marrow .e 53 to 515 1 to 454       457/456
(100 %)
3 diff
(99.4 %id)
EC517436 Prostate .e 57 to 157 1 to 105       100/105
(95 %)
15 diff
(85.8 %id)
BU567450 testis .e 59 to 715 1 to 658       658/841
(78 %)
16 diff
(98.1 %id)
BU567707 testis .e 59 to 816 1 to 759       759/768
(98 %)
11 diff
(98.6 %id)
BU567771 testis .e 59 to 840 1 to 786       786/787
(99 %)
31 diff
(96.1 %id)
CR976822 T-Lymphocytes .e 59 to 845 17 to 803       787/803
(98 %)
6 diff
(99.3 %id)
BE243832 leukopheresis .e 65 to 379 1 to 315       315/315
(100 %)
3 diff
(99.1 %id)
BE243934.
matches multiple genes
leukopheresis .e 65 to 278 1 to 215   tiling clone, also hits gene UBE2L1andUBE2L7P 215/215
(100 %)
8 diff
(96.3 %id)
BE247609 leukopheresis .e 65 to 290 1 to 227       227/227
(100 %)
3 diff
(98.7 %id)
DB474528 hippocampus .e 75 to 569 1 to 495       495/495
(100 %)
0 diff
(100 %id)
DA020249   .e 76 to 646 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
CR739929   .e 79 to 756 1 to 678       678/678
(100 %)
0 diff
(100 %id)
N55896   .e 84 to 233 1 to 149       149/151
(98 %)
4 diff
(97.4 %id)
CD368744 Alveolar Macrophage, lung .e 165 to 854 707 to 19   AAA   689/695
(99 %)
2 diff
(99.8 %id)
AA878886 2 pooled tumors (clear cell type), Kidney .e 321 to 855 538 to 3       536/538
(99 %)
7 diff
(98.7 %id)
DB543345 hippocampus .e 379 to 853 1 to 475     Submitted on the opposite strand 475/476
(99 %)
1 diff
(99.8 %id)
DA357017 subthalamic nucleus .e 388 to 949 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CR626405 Placenta Cot 25-normalized .f 1 to 1631 2 to 1632 exact tiling clone,   1632/1632
(100 %)
0 diff
(100 %id)
AK125396 brain .g 1 to 3447 5 to 3451 exact tiling clone, available from FLJ,   3451/3451
(100 %)
2 diff
(100.0 %id)
DA783776 brain .g 1 to 529 5 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA308328 hippocampus .g 482 to 1072 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DB326364 brain .g 2998 to 3447 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
DB246015 uterus, tumor tissue .h 1 to 575 5 to 577 exact tiling clone, capped   576/576
(100 %)
2 diff
(99.7 %id)
CR975979 T-Lymphocytes .h 1 to 771 2 to 772 H108R N111D tiling clone, AAA   772/772
(100 %)
2 diff
(99.8 %id)
DA995932 synovial membrane tissue from rheumatioidarthritis .h 3 to 539 2 to 539 A2L capped   538/538
(100 %)
1 diff
(99.9 %id)
CR622922 HeLa cells Cot 25-normalized .i 1 to 1119 2 to 1120 exact tiling clone,   1120/1120
(100 %)
0 diff
(100 %id)
BX341951   .i 1 to 920 2 to 918 V42D S43L L44C W45G W46G ...     918/918
(100 %)
5 diff
(99.5 %id)
DB576360 hypothalamus .i 749 to 1218 1 to 470   tiling clone, Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
TI_154029064   .i 788 to 1550 811 to 63   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 749/795
(94 %)
8 diff
(99.0 %id)
AA025888 heart .i 883 to 1213 331 to 1     Submitted on the opposite strand 331/335
(98 %)
7 diff
(98.0 %id)
AA025846 heart .i 898 to 1182 1 to 282     Submitted on the opposite strand 282/282
(100 %)
3 diff
(99.0 %id)
AW026028 Kidney .i 1138 to 1623 492 to 7   tiling clone,   486/492
(98 %)
0 diff
(100 %id)
BG003200 placenta_normal .j-u 1 to 387 16 to 400 S3V G4W R5E F6V G7A ... tiling clone,   385/400
(96 %)
6 diff
(98.5 %id)
AA069750 Pancreas .j-u 221 to 355 1 to 135   tiling clone,   135/135
(100 %)
0 diff
(100 %id)
CU013490 Synthetic constructs Gene UBE2L3, variant not shown         This clone was ignored    
TI_154186000   Gene UBE2L3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI