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Gene TUBD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
141 supporting clones for gene TUBD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_016261.2   .a -11 to 2460 1 to 2472 exact RefSeq,   2472/2472
(100 %)
0 diff
(100 %id)
DA269658 caudate nucleus .a -10 to 517 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DA607129   .a -10 to 544 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DA001075   .a 1 to 510 5 to 514   capped   513/513
(100 %)
1 diff
(99.9 %id)
DA588819 lung .a 1 to 568 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BG037204 testis .a 4 to 686 1 to 683       683/1106
(61 %)
18 diff
(98.4 %id)
BE893763 melanotic melanoma, skin .a 11 to 723 1 to 712       712/915
(77 %)
24 diff
(97.4 %id)
CX164988 human embryonic stem cells differentiated toan early endodermal cell type .a 16 to 854 1 to 839       839/839
(100 %)
0 diff
(100 %id)
DA008549 adipose .a 17 to 511 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
BM819231 stomach .a 18 to 514 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
DA165095 amygdala .a 23 to 594 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BE254093 eye, retinoblastoma .a 23 to 547 1 to 525       525/525
(100 %)
0 diff
(100 %id)
BE256242 eye, retinoblastoma .a 23 to 575 1 to 553       553/554
(99 %)
1 diff
(99.9 %id)
BX483412   .a 24 to 507 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
DA374897 thalamus .a 26 to 582 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA603432   .a 26 to 803 2 to 779   capped   778/778
(100 %)
2 diff
(99.8 %id)
DA617380   .a 26 to 597 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA651018   .a 26 to 586 2 to 563   capped   562/563
(99 %)
3 diff
(99.5 %id)
DA651019   .a 26 to 586 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA710745   .a 28 to 586 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BX492356   .a 31 to 571 10 to 550       541/550
(98 %)
6 diff
(99.0 %id)
DB250998 uterus .a 41 to 604 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
CA395915 eye, RPE/choroid .a 44 to 576 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
DA178922 amygdala .a 60 to 511 2 to 456   capped   455/456
(99 %)
10 diff
(97.9 %id)
DB455096 testis .a 106 to 603 1 to 495       495/495
(100 %)
5 diff
(99.0 %id)
DA705839   .a 170 to 666 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
AU310791 neuroblastoma .a 183 to 758 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DB205773 trachea .a 189 to 763 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DT218518 brain .a 190 to 849 1 to 660       660/660
(100 %)
1 diff
(99.9 %id)
DA717436   .a 191 to 720 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
BJ989527 hepatoblastoma .a 200 to 791 10 to 600       591/600
(98 %)
8 diff
(98.7 %id)
BG338409 leiomyosarcoma cell line, uterus .a 209 to 880 1 to 680       680/1169
(58 %)
29 diff
(97.6 %id)
BF239644 bone marrow, from chronic myelogenous leukemia .a 222 to 962 9 to 740       735/877
(83 %)
53 diff
(94.0 %id)
AL524265 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 227 to 1212 1 to 980       980/981
(99 %)
17 diff
(98.3 %id)
DA007448   .a 228 to 532 247 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
BG682935 brain, neuroblastoma, cell line .a 228 to 704 251 to 730       730/730
(100 %)
9 diff
(98.8 %id)
DA794614 brain .a 228 to 438 248 to 459   capped   458/467
(98 %)
3 diff
(99.4 %id)
DB045954 testis .a 228 to 535 246 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DB172027 kidney, tumor tissue .a 228 to 551 248 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BM453189 leiomyosarcoma, uterus .a 231 to 890 1 to 678       676/907
(74 %)
28 diff
(97.0 %id)
BF754921 colon .a 237 to 608 39 to 406       368/406
(90 %)
7 diff
(98.3 %id)
AB030837   .a 266 to 1725 1 to 1460 M76T tiling clone,   1460/1460
(100 %)
1 diff
(100.0 %id)
AF201333   .a 267 to 1628 1 to 1362 M76T     1362/1362
(100 %)
1 diff
(100.0 %id)
CV025663 mixed .a 267 to 543 1 to 277       277/277
(100 %)
0 diff
(100 %id)
FN069480 breast carcinoma .a 327 to 393 64 to 1     Submitted on the opposite strand 64/65
(98 %)
3 diff
(95.4 %id)
BF335331 colon .a 425 to 979 555 to 3       553/555
(99 %)
11 diff
(98.1 %id)
BE165911 head_neck .a 440 to 771 33 to 365       331/365
(90 %)
9 diff
(97.6 %id)
DB029326 testis .a 634 to 1150 2 to 518   capped   517/517
(100 %)
0 diff
(100 %id)
AK024741   .a 719 to 2468 1 to 1750   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1750/1750
(100 %)
2 diff
(99.9 %id)
BP204790 coronary artery .a 719 to 1299 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
CN363305 embryonic stem cells, DMSO-treated H9 cellline .a 778 to 959 1 to 182       182/182
(100 %)
0 diff
(100 %id)
BY799394 eye .a 960 to 1593 12 to 645       634/645
(98 %)
6 diff
(99.1 %id)
DA265013 caudate nucleus .a 1053 to 1619 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BX409951 brain, fetal brain .a 1063 to 2033 1 to 972       972/972
(100 %)
18 diff
(98.2 %id)
BX409952 brain, fetal brain .a 1063 to 1977 1 to 924       924/991
(93 %)
40 diff
(96.0 %id)
H38714 liver and spleen .a 1102 to 1367 1 to 267       267/267
(100 %)
1 diff
(99.7 %id)
BU856950 adenocarcinoma, cell line, breast .a 1154 to 1916 1 to 770   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 770/770
(100 %)
8 diff
(99.0 %id)
BU860436 adenocarcinoma, cell line, breast .a 1154 to 1916 1 to 763   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 763/763
(100 %)
1 diff
(99.9 %id)
BF980056 testis .a 1213 to 1865 656 to 2       655/950
(68 %)
0 diff
(100 %id)
BM505473 insulinoma, Pancreas .a 1290 to 1935 646 to 1       646/646
(100 %)
1 diff
(99.9 %id)
AW131155 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1302 to 1922 617 to 1       621/617
(100 %)
9 diff
(98.6 %id)
BM310319 insulinoma, Pancreas .a 1308 to 1879 572 to 1       572/572
(100 %)
0 diff
(100 %id)
BG003952 placenta_normal .a 1341 to 1722 18 to 402       387/412
(93 %)
18 diff
(95.7 %id)
BG683645 brain, neuroblastoma, cell line .a 1341 to 1845 541 to 29       513/629
(81 %)
7 diff
(98.9 %id)
BM972896 lung .a 1379 to 1934 556 to 1       556/556
(100 %)
0 diff
(100 %id)
DB353517   .a 1388 to 1916 526 to 1       526/526
(100 %)
17 diff
(96.8 %id)
AA992600   .a 1422 to 1922 504 to 1       504/504
(100 %)
6 diff
(98.9 %id)
AL524264 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1449 to 2450 989 to 1   tiling clone,   993/1076
(92 %)
42 diff
(96.1 %id)
BE882399 leiomyosarcoma, uterus .a 1468 to 2178 1 to 695       695/931
(74 %)
8 diff
(99.2 %id)
AI075697   .a 1481 to 1921 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
DB520502 testis .a 1488 to 1916 1 to 429   AAA Submitted on the opposite strand 429/429
(100 %)
1 diff
(99.8 %id)
AW193461 adenocarcinoma, Pancreas .a 1501 to 1930 430 to 1       430/430
(100 %)
2 diff
(99.6 %id)
BM473256 duodenal adenocarcinoma, cell line, small intestine .a 1501 to 2263 1 to 770       770/1115
(69 %)
25 diff
(97.8 %id)
BC000258 Eye, retinoblastoma .b 1 to 1748 1 to 1748 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1748/1748
(100 %)
0 diff
(100 %id)
TI_1948093030   .b 262 to 932 133 to 803   fully sequenced,   671/803
(83 %)
6 diff
(99.3 %id)
TI_1948093181   .b 262 to 932 134 to 804   fully sequenced,   671/804
(83 %)
6 diff
(99.3 %id)
TI_1948093347   .b 262 to 932 134 to 804   fully sequenced,   671/804
(83 %)
6 diff
(99.3 %id)
TI_1948093497   .b 262 to 932 128 to 798   fully sequenced,   671/798
(84 %)
9 diff
(98.9 %id)
AB031044   .b 263 to 1557 1 to 1295 M76T     1295/1295
(100 %)
1 diff
(100.0 %id)
TI_149287600   .b 884 to 1748 940 to 81   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 860/1167
(73 %)
23 diff
(98.1 %id)
TI_1948093031   .b 902 to 1459 679 to 122   fully sequenced,   558/679
(82 %)
0 diff
(100 %id)
TI_1948093182   .b 902 to 1459 682 to 125   fully sequenced,   558/682
(81 %)
0 diff
(100 %id)
TI_1948093348   .b 902 to 1459 680 to 123   fully sequenced,   558/680
(82 %)
0 diff
(100 %id)
TI_1948093498   .b 902 to 1459 681 to 124   fully sequenced,   558/681
(81 %)
0 diff
(100 %id)
AK298492 mammary gland .c 1 to 1680 1 to 1680 C130R K270R tiling clone,   1680/1680
(100 %)
2 diff
(99.9 %id)
DA646575 mammary gland .c 2 to 836 2 to 833   capped   832/832
(100 %)
15 diff
(98.2 %id)
DB361274 mammary gland .c 1134 to 1680 542 to 1       542/543
(99 %)
14 diff
(97.5 %id)
DA733912   .d -10 to 522 2 to 534   tiling clone, capped   533/543
(98 %)
3 diff
(99.5 %id)
AB031045   .d 413 to 1566 1 to 1154   tiling clone,   1154/1154
(100 %)
1 diff
(100.0 %id)
DB365911   .d 1197 to 1757 565 to 1       565/567
(99 %)
15 diff
(97.4 %id)
H38625.
matches multiple genes
liver and spleen .d 1357 to 1754 409 to 6     also hits gene moyleeby 404/409
(98 %)
0 diff
(100 %id)
AI721114 colon .d 1362 to 1684 1 to 323     Submitted on the opposite strand 323/323
(100 %)
3 diff
(99.1 %id)
BM772318 myeloma .d 1387 to 2099 1 to 716   tiling clone,   716/716
(100 %)
1 diff
(99.9 %id)
BE782280 eye, retinoblastoma .d 1398 to 1788 1 to 391   AAA   391/537
(72 %)
6 diff
(98.9 %id)
AA769221 germinal center B cell .d 1513 to 1935 423 to 1   tiling clone,   423/423
(100 %)
3 diff
(99.3 %id)
BF876993 lung_tumor .d 1758 to 1917 170 to 11     Submitted on the opposite strand 160/170
(94 %)
7 diff
(95.9 %id)
W33133 parathyroid gland, parathyroid tumor .d 1824 to 2048 1 to 225     Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 225/226
(99 %)
1 diff
(99.6 %id)
BX119803 parathyroid gland, parathyroid tumor .d 1826 to 2309 1 to 484   tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 484/484
(100 %)
0 diff
(100 %id)
BE502169 pooled germ cell tumors .d 1865 to 2309 445 to 1       445/445
(100 %)
2 diff
(99.6 %id)
CF144677 CNCAP(3)T-225 cell line, Prostate .d 1917 to 2270 78 to 431       354/431
(82 %)
11 diff
(97.5 %id)
TI_154176773   .d 1917 to 2309 150 to 542   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 393/463
(84 %)
7 diff
(98.5 %id)
AI918799 pooled germ cell tumors .d 1922 to 2309 388 to 1       388/388
(100 %)
0 diff
(100 %id)
AW968145   .d 1937 to 2320 1 to 384       384/563
(68 %)
3 diff
(99.5 %id)
AW472806 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 1952 to 2309 358 to 1       358/358
(100 %)
2 diff
(99.5 %id)
AA481303 germinal center B cell .d 1972 to 2309 1 to 338       338/338
(100 %)
1 diff
(99.8 %id)
T92718 lung .d 1982 to 2316 342 to 2   tiling clone,   341/437
(78 %)
0 diff
(100 %id)
AI468299 Prostate .d 2078 to 2309 232 to 1       232/232
(100 %)
0 diff
(100 %id)
AA848060 ovary .d 2106 to 2310 1 to 205       205/205
(100 %)
0 diff
(100 %id)
W33134 parathyroid gland, parathyroid tumor .d 2169 to 2309 155 to 15   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 141/141
(100 %)
0 diff
(100 %id)
BM310051 insulinoma, Pancreas .e -9 to 510 1 to 520   tiling clone,   520/520
(100 %)
6 diff
(98.9 %id)
BM505715 insulinoma, Pancreas .e -9 to 421 1 to 432       432/432
(100 %)
7 diff
(98.4 %id)
BM511190 insulinoma, Pancreas .e -9 to 439 1 to 449       449/449
(100 %)
6 diff
(98.7 %id)
BQ128087 insulinoma, Pancreas .e -9 to 503 1 to 513       513/513
(100 %)
6 diff
(98.9 %id)
BQ581142 insulinoma, Pancreas .e -9 to 510 1 to 520       520/520
(100 %)
6 diff
(98.9 %id)
BU072965 insulinoma, Pancreas .e -9 to 392 1 to 402       402/402
(100 %)
6 diff
(98.6 %id)
BU782037 insulinoma, Pancreas .e -9 to 607 1 to 617       617/617
(100 %)
6 diff
(99.1 %id)
BU782002 insulinoma, Pancreas .e -9 to 609 1 to 619   tiling clone,   619/619
(100 %)
6 diff
(99.1 %id)
BU788208 insulinoma, Pancreas .e -9 to 472 1 to 482       482/482
(100 %)
6 diff
(98.8 %id)
BU787775 insulinoma, Pancreas .e -9 to 507 1 to 517       517/517
(100 %)
6 diff
(98.9 %id)
BU075894 insulinoma, Pancreas .e 1 to 581 11 to 591       584/591
(98 %)
7 diff
(98.9 %id)
BU070953 insulinoma, Pancreas .e 792 to 1467 677 to 1   tiling clone,   677/677
(100 %)
1 diff
(99.9 %id)
BU782928 insulinoma, Pancreas .e 801 to 1466 666 to 1       666/666
(100 %)
0 diff
(100 %id)
BQ549318 insulinoma, Pancreas .e 810 to 1466 657 to 1       657/657
(100 %)
0 diff
(100 %id)
BU782895 insulinoma, Pancreas .e 813 to 1467 655 to 1   tiling clone,   655/655
(100 %)
0 diff
(100 %id)
BQ128350 insulinoma, Pancreas .e 828 to 1467 640 to 1       640/640
(100 %)
0 diff
(100 %id)
BU787499 insulinoma, Pancreas .e 1017 to 1466 450 to 1       450/450
(100 %)
0 diff
(100 %id)
BU784534 insulinoma, Pancreas .e 1080 to 1467 388 to 1       388/388
(100 %)
1 diff
(99.8 %id)
AK315172 testis .f 228 to 1559 246 to 1577 L150P tiling clone,   1577/1577
(100 %)
2 diff
(99.9 %id)
AA370137 Prostate .f 663 to 932 1 to 270       270/270
(100 %)
0 diff
(100 %id)
CD358419 testis .g 1 to 812 1 to 815 V225G A236G F237L S238* tiling clone,   815/872
(93 %)
8 diff
(99.1 %id)
DA886873   .h -10 to 548 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DA871403 Prostate .h 46 to 581 2 to 540   capped   537/539
(99 %)
3 diff
(99.5 %id)
BP277371 Kidney .h 47 to 629 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
CX788605 human embryonic stem cells .h 62 to 846 1 to 785       785/785
(100 %)
1 diff
(99.9 %id)
BX459984 brain, fetal brain .h 63 to 996 1 to 934 L136P E243G tiling clone,   934/937
(99 %)
6 diff
(99.4 %id)
BP256772 Kidney .h 178 to 747 1 to 570   tiling clone,   570/570
(100 %)
0 diff
(100 %id)
AK301312 stomach .i 1 to 1027 1 to 1027 exact tiling clone,   1027/1027
(100 %)
1 diff
(100.0 %id)
DC392480 stomach .i 1 to 573 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
AK024096 whole embryo, mainly head .j 1 to 1491 2 to 1492 N144D tiling clone, available from FLJ,   1492/1492
(100 %)
3 diff
(99.8 %id)
AU118851 whole embryo, mainly head .j 1 to 790 2 to 789 N144D C197X capped   788/791
(99 %)
6 diff
(99.3 %id)
CX782190 human embryonic stem cells .k 1 to 843 8 to 849 exact tiling clone,   842/842
(100 %)
1 diff
(99.9 %id)
DA899644 skeletal muscle .l 1 to 562 4 to 565   tiling clone, capped   564/564
(100 %)
2 diff
(99.7 %id)
AW754444 colon .l 536 to 853 1 to 321   tiling clone,   321/321
(100 %)
18 diff
(94.4 %id)
BG338579 leiomyosarcoma cell line, uterus .m 1 to 754 1 to 740 C38R F96L S97A K98N Y99M ... tiling clone,   740/993
(74 %)
17 diff
(98.3 %id)
DB118407 thymus .m 12 to 573 2 to 563   tiling clone, capped   562/562
(100 %)
2 diff
(99.7 %id)
BM838091 Ascites, stomach .n 1 to 593 4 to 596 M76T tiling clone,   596/596
(100 %)
2 diff
(99.7 %id)
DR422101 eye, Pterygium .n 69 to 819 1 to 751 M76T tiling clone,   751/751
(100 %)
2 diff
(99.8 %id)
CD515721 White Matter .o 1 to 824 1 to 834 W76L A77G G78W L79P L80P ... tiling clone,   834/877
(95 %)
13 diff
(98.6 %id)
BP375734 uterus .p 1 to 551 1 to 551 exact tiling clone,   551/551
(100 %)
0 diff
(100 %id)
BG389637 embryonal carcinoma, cell line, testis .q 1 to 746 4 to 746 S45P Q46K S47V A48L E49R ... tiling clone,   746/798
(93 %)
9 diff
(98.9 %id)
DB448878 testis .r-u 1 to 431 1 to 431 exact tiling clone,   431/431
(100 %)
0 diff
(100 %id)
AU126511   Gene TUBD1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB318440   Gene TUBD1, variant not shown              
DA554253   Gene TUBD1, variant not shown       capped      
DB357272 whole embryo, mainly head Gene TUBD1, variant not shown         Suspected internal deletion, this clone was ignored    
DA570503 whole embryo, mainly head Gene TUBD1, variant not shown       capped Suspected internal deletion, this clone was ignored    
AK022771   Gene TUBD1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB273055 uterus Gene TUBD1, variant not shown       capped This clone was ignored    
DA083661 cerebellum Gene TUBD1, variant not shown       capped This clone was ignored    
AW028432 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene TUBD1, variant not shown              
BQ416682 Pancreas, Purified pancreatic islet Gene TUBD1, variant not shown              
BQ416988 Pancreas, Purified pancreatic islet Gene TUBD1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C