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Gene TRPC6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
79 supporting clones for gene TRPC6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA506544 brain .a 1 to 387 2 to 388   tiling clone, capped   387/387
(100 %)
0 diff
(100 %id)
DA296818 hippocampus .a 12 to 582 2 to 572   capped   571/573
(99 %)
3 diff
(99.5 %id)
DB237027 trachea .a 62 to 556 2 to 497   capped   496/497
(99 %)
2 diff
(99.6 %id)
AJ006276   .a 88 to 4623 1 to 4540 exact tiling clone,   4540/4564
(99 %)
5 diff
(99.9 %id)
NM_004621.5   .a 90 to 4701 1 to 4612 exact RefSeq,   4612/4612
(100 %)
0 diff
(100 %id)
DA595516 lung .a 160 to 722 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA654796   .a 168 to 728 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BC093658 Lung and heart, PCR rescued clones .a 451 to 3402 1 to 2952 exact     2952/2952
(100 %)
1 diff
(100.0 %id)
BC093660 Lung and heart, PCR rescued clones .a 451 to 3402 1 to 2952 exact     2952/2952
(100 %)
1 diff
(100.0 %id)
TI_891526994   .a 451 to 1616 45 to 1197       1153/1220
(94 %)
33 diff
(97.3 %id)
TI_891526998   .a 451 to 1609 48 to 1202       1155/1230
(93 %)
26 diff
(97.9 %id)
TI_891526995   .a 451 to 1642 47 to 1234   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1188/1237
(96 %)
32 diff
(97.5 %id)
TI_891526999   .a 451 to 1591 48 to 1181       1134/1233
(91 %)
27 diff
(97.9 %id)
AF080394   .a 498 to 3573 1 to 3076 exact AAA   3076/3076
(100 %)
1 diff
(100.0 %id)
AJ271066 placenta .a 515 to 3310 1 to 2796 exact     2796/2796
(100 %)
0 diff
(100 %id)
TI_891528095   .a 858 to 2024 2 to 1172       1171/1246
(93 %)
24 diff
(98.1 %id)
TI_891528079   .a 864 to 2012 1 to 1162       1162/1254
(92 %)
38 diff
(97.0 %id)
TI_891528103   .a 917 to 2129 1 to 1202       1204/1221
(98 %)
38 diff
(96.9 %id)
TI_891528087   .a 931 to 1636 10 to 719       710/719
(98 %)
28 diff
(96.2 %id)
TI_891528080   .a 1076 to 2025 11 to 967       957/1291
(74 %)
15 diff
(98.9 %id)
TI_891528096   .a 1076 to 2253 9 to 1182       1174/1218
(96 %)
34 diff
(97.3 %id)
TI_891528714   .a 1148 to 2196 1093 to 29       1065/1258
(84 %)
26 diff
(98.0 %id)
TI_891528081   .a 1237 to 2418 6 to 1199       1194/1283
(93 %)
37 diff
(97.2 %id)
TI_891528097   .a 1237 to 2232 8 to 1012       1005/1283
(78 %)
21 diff
(98.4 %id)
TI_891528704   .a 1312 to 2402 1108 to 6       1103/1264
(87 %)
16 diff
(98.8 %id)
TI_891528088   .a 1373 to 2523 10 to 1173       1164/1252
(92 %)
28 diff
(97.8 %id)
TI_891528072   .a 1398 to 1969 24 to 596       573/597
(95 %)
10 diff
(98.4 %id)
AK027769 placenta .a 1442 to 4337 1 to 2897   available from FLJ,   2897/2897
(100 %)
8 diff
(99.8 %id)
DA828800 placenta .a 1443 to 2150 2 to 709   capped   708/709
(99 %)
10 diff
(98.6 %id)
DA863370 placenta .a 1443 to 2086 2 to 645   capped   644/644
(100 %)
0 diff
(100 %id)
TI_891528703   .a 1643 to 2784 1147 to 3       1145/1244
(92 %)
28 diff
(97.8 %id)
TI_891528713   .a 1643 to 2725 1106 to 9       1098/1136
(96 %)
28 diff
(97.6 %id)
TI_891528082   .a 1664 to 2723 16 to 1089       1074/1226
(87 %)
30 diff
(97.6 %id)
TI_891528098   .a 1674 to 2719 20 to 1077       1058/1238
(85 %)
23 diff
(98.2 %id)
TI_891528073   .a 1677 to 2528 25 to 882       858/967
(88 %)
18 diff
(98.2 %id)
TI_891528702   .a 1869 to 3007 1163 to 18       1146/1238
(92 %)
10 diff
(99.2 %id)
AJ007018   .a 1972 to 2443 1 to 472       472/472
(100 %)
4 diff
(99.2 %id)
TI_891528074   .a 1992 to 2687 19 to 716       698/716
(97 %)
26 diff
(96.4 %id)
TI_891528712   .a 2026 to 3007 1017 to 24   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 994/1323
(75 %)
19 diff
(98.6 %id)
TI_891528083   .a 2030 to 3095 5 to 1081       1077/1112
(96 %)
81 diff
(92.8 %id)
DA547390   .a 2157 to 2700 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
TI_891528075   .a 2265 to 3343 1 to 1094       1094/1299
(84 %)
32 diff
(97.6 %id)
TI_891527007   .a 2319 to 3409 1139 to 61       1079/1227
(87 %)
12 diff
(99.1 %id)
TI_891527003   .a 2333 to 3409 1125 to 61       1065/1223
(87 %)
12 diff
(99.1 %id)
BI771244 pooled lung and spleen .a 2361 to 3069 1 to 708       708/708
(100 %)
4 diff
(99.5 %id)
TI_57182689   .a 2363 to 3069 35 to 740       706/740
(95 %)
7 diff
(99.1 %id)
TI_891528084   .a 2466 to 3411 13 to 971       959/1008
(95 %)
34 diff
(96.7 %id)
TI_891528100   .a 2471 to 3418 16 to 963       948/1274
(74 %)
14 diff
(99.0 %id)
TI_891528076   .a 2531 to 3411 20 to 904       885/1121
(78 %)
16 diff
(98.6 %id)
BF085706 placenta_normal .a 2611 to 3133 522 to 1       522/522
(100 %)
5 diff
(99.1 %id)
BF085698 placenta_normal .a 2679 to 3141 463 to 2       462/463
(99 %)
4 diff
(99.2 %id)
BF001360 Prostate .a 2817 to 3495 676 to 1       676/677
(99 %)
11 diff
(98.4 %id)
BG539715 lung .a 2862 to 3587 1 to 733       735/924
(79 %)
26 diff
(97.2 %id)
TI_891528101   .a 2873 to 3409 9 to 543       535/1237
(43 %)
10 diff
(99.2 %id)
BF106229 lung .a 2873 to 3454 1 to 582       582/583
(99 %)
6 diff
(99.0 %id)
TI_891528077   .a 2876 to 3411 11 to 546       536/1236
(43 %)
11 diff
(99.2 %id)
TI_891528085   .a 2876 to 3411 14 to 549       536/880
(60 %)
13 diff
(98.6 %id)
AI658667 Prostate .a 2895 to 3570 674 to 1       674/674
(100 %)
9 diff
(98.7 %id)
AK001960 placenta .a 2986 to 4789 1 to 1808   tiling clone, available from FLJ,   1808/1808
(100 %)
4 diff
(99.8 %id)
AU136989 placenta .a 2987 to 3656 2 to 679   capped   678/776
(87 %)
18 diff
(97.7 %id)
CD677635 eye, Trabecular meshwork .a 3169 to 3569 1 to 401   AAA   401/401
(100 %)
0 diff
(100 %id)
BM724871 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3271 to 4026 1 to 753       753/758
(99 %)
9 diff
(98.9 %id)
AA633029 lung, lung tumor .a 3317 to 3571 255 to 1       255/255
(100 %)
1 diff
(99.7 %id)
AI381238   .a 3326 to 3573 248 to 1       248/248
(100 %)
0 diff
(100 %id)
AW303658 pooled .a 3383 to 3907 1 to 525     Submitted on the opposite strand 525/525
(100 %)
1 diff
(99.9 %id)
CA312768 Human Lung Epithelial cells, lung .a 3565 to 4340 796 to 19   tiling clone, AAA   778/778
(100 %)
5 diff
(99.4 %id)
BX098806 heart .a 3671 to 4323 1 to 657   AAA   657/657
(100 %)
2 diff
(99.7 %id)
AF086426   .a 3671 to 4323 1 to 657   AAA   657/657
(100 %)
2 diff
(99.7 %id)
W79110 heart .a 3671 to 4090 1 to 424       424/436
(97 %)
8 diff
(98.2 %id)
W79774 heart .a 3894 to 4324 442 to 2       441/442
(99 %)
0 diff
(100 %id)
DB373407 placenta .a 4031 to 4337 307 to 1       307/312
(98 %)
4 diff
(98.8 %id)
BU741499 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4089 to 4700 626 to 15   AAA   612/612
(100 %)
2 diff
(99.7 %id)
AU156966 placenta .a 4279 to 4789 513 to 2       512/513
(99 %)
0 diff
(100 %id)
AJ271068 placenta .b 1 to 2631 1 to 2631 C336R I558T tiling clone,   2631/2631
(100 %)
5 diff
(99.9 %id)
AJ271067 placenta .c 1 to 2448 1 to 2448 exact tiling clone,   2448/2448
(100 %)
3 diff
(99.9 %id)
TI_891528099   .d 1 to 1135 1 to 1131 I2M W3G E5V E8K I9S ... tiling clone,   1131/1256
(90 %)
17 diff
(98.7 %id)
DR005772 Prostate .e-u 1 to 372 1 to 372 exact tiling clone,   372/372
(100 %)
0 diff
(100 %id)
DN994132 brain, whole brain .f 1 to 558 9 to 578 S38A D39Y R40M S41F T42S ... tiling clone,   570/578
(98 %)
12 diff
(98.0 %id)
DA595236 lung .g 1 to 531 2 to 532   tiling clone, capped   531/531
(100 %)
1 diff
(99.9 %id)
BF883790 lung_tumor .g 425 to 849 426 to 1 V83S R84K S85V G86R V87R ... tiling clone, Submitted on the opposite strand 426/426
(100 %)
3 diff
(99.3 %id)
TI_57182316   .h 1 to 648 61 to 708 exact tiling clone,   648/708
(91 %)
6 diff
(99.2 %id)
BI771648 pooled lung and spleen .h 4 to 648 1 to 645       645/645
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI