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Gene TRPC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
101 supporting clones for gene TRPC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN367956 embryonic stem cells, cell lines H1, H7, andH9 .a 1 to 437 1 to 437   tiling clone,   437/438
(99 %)
3 diff
(99.4 %id)
CA396211 eye, RPE/choroid .a 5 to 408 1 to 404   tiling clone,   404/404
(100 %)
5 diff
(98.8 %id)
Z73903 brain .a 109 to 4146 8 to 4043 F63S A65Q N66R G67A P68S ... tiling clone,   4036/5554
(72 %)
12 diff
(99.8 %id)
DB450269 testis .a 305 to 564 1 to 257       257/257
(100 %)
7 diff
(97.3 %id)
CN367957 embryonic stem cells, cell lines H1, H7, andH9 .a 315 to 438 1 to 124       124/124
(100 %)
1 diff
(99.2 %id)
X89066 brain .a 364 to 4430 1 to 4067   tiling clone, AAA   4067/4067
(100 %)
2 diff
(100.0 %id)
NM_003304.4   .a 365 to 4430 1 to 4066   RefSeq, AAA   4066/4066
(100 %)
0 diff
(100 %id)
DR002369 fetal brain .a 447 to 863 1 to 416       416/417
(99 %)
2 diff
(99.6 %id)
T07204   .a 487 to 783 1 to 297       297/297
(100 %)
0 diff
(100 %id)
AB255425 brain .a 501 to 2780 1 to 2280       2280/2280
(100 %)
3 diff
(99.9 %id)
BX331349 Neuroblastoma Cot 10-normalized .a 856 to 1684 1 to 834       834/834
(100 %)
5 diff
(99.5 %id)
AA247801   .a 872 to 1122 8 to 255       248/255
(97 %)
7 diff
(97.3 %id)
BX389360 Neuroblastoma Cot 10-normalized .a 1580 to 2458 1 to 887       887/887
(100 %)
28 diff
(96.9 %id)
DB185459 liver, tumor tissue .a 2020 to 2602 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB636680 testis .a 2193 to 2896 1 to 703     Submitted on the opposite strand 703/703
(100 %)
6 diff
(99.2 %id)
TI_57219177   .a 2193 to 3142 31 to 994       964/1157
(83 %)
67 diff
(94.3 %id)
BI752497 brain .a 2194 to 3142 1 to 963       963/1126
(85 %)
62 diff
(94.5 %id)
AI912420 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2289 to 2658 370 to 1       370/370
(100 %)
9 diff
(97.6 %id)
DA381552 thalamus .a 2354 to 2992 2 to 640   capped   639/639
(100 %)
0 diff
(100 %id)
DB363701   .a 2354 to 2896 547 to 1       547/604
(90 %)
11 diff
(98.2 %id)
CB985292 Pooled-Glandular .a 2683 to 3404 1 to 722       722/722
(100 %)
5 diff
(99.4 %id)
DB503055 hypothalamus .a 2759 to 3237 1 to 479       479/479
(100 %)
0 diff
(100 %id)
BX093058 whole brain .a 2776 to 3274 1 to 497       497/497
(100 %)
4 diff
(99.2 %id)
R18151 whole brain .a 2776 to 3214 1 to 454       454/455
(99 %)
37 diff
(91.9 %id)
H09828 whole brain .a 2776 to 3203 1 to 438       438/446
(98 %)
12 diff
(97.4 %id)
BP211887 cerebrum .a 2877 to 3461 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BG926486 cartilage .a 2888 to 3462 87 to 662       576/593
(97 %)
6 diff
(99.0 %id)
CN367958 embryonic stem cells, DMSO-treated H9 cellline .a 2899 to 3311 1 to 414       414/414
(100 %)
3 diff
(99.3 %id)
BE878500 large cell carcinoma, undifferentiated, lung .a 2971 to 3338 1 to 372       372/401
(92 %)
13 diff
(96.8 %id)
BG149900 carcinoid, lung .a 2973 to 3304 1 to 332     Submitted on the opposite strand 332/332
(100 %)
0 diff
(100 %id)
BF433640 carcinoid, lung .a 2973 to 3508 1 to 536     Submitted on the opposite strand 536/536
(100 %)
0 diff
(100 %id)
Z41868 brain, total brain .a 2974 to 3233 1 to 260       260/260
(100 %)
0 diff
(100 %id)
CX788708 human embryonic stem cells .a 2979 to 3789 1 to 812       812/812
(100 %)
1 diff
(99.9 %id)
BE550713 carcinoid, lung .a 2985 to 3517 1 to 533     Submitted on the opposite strand 533/533
(100 %)
0 diff
(100 %id)
R52601 whole brain .a 3020 to 3375 1 to 362       362/366
(98 %)
7 diff
(98.1 %id)
AI273561 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3075 to 3472 1 to 398     Submitted on the opposite strand 398/398
(100 %)
0 diff
(100 %id)
AI273572 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3075 to 3471 1 to 397     Submitted on the opposite strand 397/397
(100 %)
0 diff
(100 %id)
CN367959 embryonic stem cells, DMSO-treated H9 cellline .a 3275 to 3926 1 to 652       652/652
(100 %)
5 diff
(99.3 %id)
AI948524 2 pooled tumors (clear cell type), Kidney .a 3280 to 3845 1 to 563     Submitted on the opposite strand 563/563
(100 %)
6 diff
(99.0 %id)
AW949452   .a 3378 to 4005 1 to 628       628/628
(100 %)
0 diff
(100 %id)
H09740 whole brain .a 4039 to 4430 403 to 11   AAA   393/393
(100 %)
3 diff
(99.3 %id)
R41698 whole brain .a 4114 to 4430 337 to 11   AAA   327/457
(71 %)
12 diff
(97.4 %id)
R52545 whole brain .a 4156 to 4430 292 to 18   AAA   275/275
(100 %)
2 diff
(99.3 %id)
Z38167 brain, total brain .a 4244 to 4430 187 to 1       187/187
(100 %)
1 diff
(99.5 %id)
BU621066 cell lines, Chondrosarcoma .b 1 to 673 689 to 19 exact tiling clone, AAA   671/671
(100 %)
2 diff
(99.8 %id)
EF522961   .c 1 to 246 142 to 387   tiling clone,   246/389
(63 %)
7 diff
(98.3 %id)
GQ293239   .c 49 to 408 1 to 360   tiling clone,   360/360
(100 %)
0 diff
(100 %id)
CN367960 embryonic stem cells, cell lines H1, H7, andH9 .d 1 to 397 1 to 397 exact tiling clone,   397/397
(100 %)
0 diff
(100 %id)
DA412092 thalamus .e-u 1 to 511 2 to 512 exact tiling clone, capped   511/511
(100 %)
0 diff
(100 %id)
DA097988 cerebellum .e-u 61 to 624 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
AA017341 eye, retina .e-u 432 to 705 1 to 273   tiling clone,   273/273
(100 %)
2 diff
(99.3 %id)
AA328985   .e-u 1583 to 1905 1 to 324   tiling clone,   324/324
(100 %)
1 diff
(99.7 %id)
AW949445   .e-u 1584 to 1757 1 to 174       174/175
(99 %)
5 diff
(97.2 %id)
AU123453   .e-u 1591 to 2328 2 to 739   capped   738/741
(99 %)
2 diff
(99.8 %id)
CR738660 heart .e-u 1613 to 2115 1 to 506       506/512
(98 %)
5 diff
(99.1 %id)
AA242949 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 1628 to 2011 1 to 384       384/384
(100 %)
0 diff
(100 %id)
BU569504 testis .e-u 1628 to 2277 1 to 657       657/847
(77 %)
22 diff
(97.5 %id)
BU569935 testis .e-u 1628 to 2416 1 to 790       790/790
(100 %)
12 diff
(98.5 %id)
AA258337 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 1634 to 1981 1 to 349       349/349
(100 %)
1 diff
(99.8 %id)
W30728 senescent fibroblast .e-u 1715 to 2103 1 to 389       389/389
(100 %)
0 diff
(100 %id)
AV731498 hypothalamus .e-u 1738 to 2402 44 to 705       662/715
(92 %)
14 diff
(98.1 %id)
TI_149306623   .e-u 1740 to 2520 79 to 855     Submitted on the opposite strand 777/1067
(72 %)
23 diff
(97.9 %id)
CB851364 lung, Primary Lung Epithelial Cells .e-u 1740 to 2314 19 to 593     Submitted on the opposite strand 575/593
(96 %)
6 diff
(99.0 %id)
H85296 melanocyte .e-u 1820 to 2142 1 to 324       324/324
(100 %)
1 diff
(99.7 %id)
AA935717 carcinoid, lung .e-u 1822 to 2228 1 to 407     Submitted on the opposite strand 407/407
(100 %)
0 diff
(100 %id)
AI693415 carcinoid, lung .e-u 1822 to 2348 1 to 527     Submitted on the opposite strand 527/527
(100 %)
0 diff
(100 %id)
TI_151705658   .e-u 1837 to 2366 64 to 594     Submitted on the opposite strand 531/913
(58 %)
29 diff
(96.9 %id)
TI_151754421   .e-u 1837 to 2637 55 to 854   tiling clone, AAA Submitted on the opposite strand 800/854
(93 %)
6 diff
(99.3 %id)
AI141760 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 1881 to 2634 733 to 1       733/740
(99 %)
26 diff
(96.5 %id)
BM717484 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 1978 to 2636 681 to 23   AAA Submitted on the opposite strand 659/659
(100 %)
0 diff
(100 %id)
BQ003340 Chondrosarcoma, Left Pelvis .e-u 1979 to 2636 674 to 17   AAA   658/658
(100 %)
1 diff
(99.9 %id)
BQ003330 Chondrosarcoma, Left Pelvis .e-u 1989 to 2636 666 to 17   AAA   650/650
(100 %)
6 diff
(99.1 %id)
BM692493 eye, human retina .e-u 2034 to 2636 625 to 23   AAA Submitted on the opposite strand 603/604
(99 %)
0 diff
(100 %id)
AW274590 pooled .e-u 2072 to 2639 572 to 5       568/572
(99 %)
0 diff
(100 %id)
DB298873 cerebellum .e-u 2079 to 2636 559 to 1       559/560
(99 %)
1 diff
(99.9 %id)
AW070257 pooled .e-u 2085 to 2639 560 to 5       556/560
(99 %)
0 diff
(100 %id)
BF476749 sympathetic trunk .e-u 2102 to 2635 535 to 2       534/535
(99 %)
0 diff
(100 %id)
BP391506 pancreatic islet .e-u 2125 to 2600 1 to 477     Submitted on the opposite strand 477/477
(100 %)
2 diff
(99.6 %id)
AI765417 2 pooled tumors (clear cell type), Kidney .e-u 2131 to 2639 510 to 1       510/510
(100 %)
3 diff
(99.5 %id)
BE645742 Prostate .e-u 2132 to 2639 510 to 4       507/510
(99 %)
0 diff
(100 %id)
AA258316 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 2145 to 2639 495 to 1   tiling clone,   495/495
(100 %)
0 diff
(100 %id)
BF513258   .e-u 2145 to 2301 22 to 178     Submitted on the opposite strand 157/178
(88 %)
6 diff
(96.7 %id)
AI683848 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e-u 2152 to 2638 487 to 1       487/487
(100 %)
0 diff
(100 %id)
AI569857 Kidney .e-u 2163 to 2636 473 to 1       473/473
(100 %)
7 diff
(98.6 %id)
AI560821 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e-u 2163 to 2636 484 to 11   AAA   474/474
(100 %)
0 diff
(100 %id)
BE218965 carcinoid, lung .e-u 2163 to 2636 474 to 1       474/474
(100 %)
0 diff
(100 %id)
DB574258 hypothalamus .e-u 2188 to 2639 1 to 452     Submitted on the opposite strand 452/454
(99 %)
2 diff
(99.6 %id)
AW242397 Kidney .e-u 2189 to 2636 448 to 1       448/448
(100 %)
13 diff
(97.1 %id)
AA017132 eye, retina .e-u 2204 to 2635 433 to 1       433/433
(100 %)
4 diff
(99.1 %id)
AW148802 brain, tumor, 5 pooled (see description) .e-u 2207 to 2639 454 to 22       433/454
(95 %)
0 diff
(100 %id)
N99257 senescent fibroblast .e-u 2209 to 2634 433 to 13   AAA   421/461
(91 %)
6 diff
(98.7 %id)
AI301172 carcinoid, lung .e-u 2230 to 2636 407 to 1       407/407
(100 %)
0 diff
(100 %id)
AI765405 2 pooled tumors (clear cell type), Kidney .e-u 2239 to 2639 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
AA242814 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 2260 to 2639 380 to 1       380/380
(100 %)
0 diff
(100 %id)
AI948912 2 pooled tumors (clear cell type), Kidney .e-u 2298 to 2639 344 to 3       342/344
(99 %)
0 diff
(100 %id)
AI537183 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e-u 2300 to 2636 337 to 1       337/337
(100 %)
3 diff
(99.2 %id)
AI682471 Prostate .e-u 2328 to 2637 310 to 1       310/310
(100 %)
0 diff
(100 %id)
N46434 multiple sclerosis lesions .e-u 2351 to 2634 293 to 1       293/293
(100 %)
9 diff
(97.0 %id)
AI280444 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 2355 to 2636 295 to 14   AAA   282/282
(100 %)
1 diff
(99.7 %id)
H84832 melanocyte .e-u 2444 to 2597 154 to 1       154/154
(100 %)
0 diff
(100 %id)
BQ640514 eye, retina .e-u 2457 to 2636 1 to 180   AAA   180/180
(100 %)
0 diff
(100 %id)
CN268633 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 1 to 407 1 to 407 K39E tiling clone,   407/407
(100 %)
2 diff
(99.6 %id)
AV703712 adrenal gland .f-u 293 to 973 1 to 672   tiling clone,   672/672
(100 %)
17 diff
(97.5 %id)
BC112338 PCR rescued clones Gene TRPC1, variant not shown         Suspected internal deletion, this clone was ignored    
BC113953 PCR rescued clones Gene TRPC1, variant not shown         Suspected internal deletion, this clone was ignored    
DA224947 brain Gene TRPC1, variant not shown       capped      
H67587 liver and spleen Gene TRPC1, variant not shown              
N69526 liver and spleen Gene TRPC1, variant not shown              
W01500 liver and spleen Gene TRPC1, variant not shown              
AA081892   Gene TRPC1, variant not shown         This clone was ignored    
DA806110 brain Gene TRPC1, variant not shown       capped      
DB268661 uterus Gene TRPC1, variant not shown       capped      
DB351905 uterus Gene TRPC1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI