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Gene TRNT1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
273 supporting clones for gene TRNT1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC012537 Bone marrow, chronic myelogenous leukemia TRNT1.a 1 to 1836 1 to 1836 P23L tiling clone, available from MGC, AAA   1836/1836
(100 %)
4 diff
(99.8 %id)
AB063105   TRNT1.a 9 to 1388 1 to 1380 P23L tiling clone,   1380/1380
(100 %)
2 diff
(99.9 %id)
AF151805   TRNT1.a 9 to 1388 1 to 1379 R16S W17G S18V R19G L20C ...     1379/1379
(100 %)
4 diff
(99.8 %id)
CK905027 Islets of Langerhans, Pancreas TRNT1.a 30 to 582 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
TI_57243229   TRNT1.a 82 to 855 26 to 798       773/798
(96 %)
12 diff
(98.5 %id)
DB172129 kidney, tumor tissue TRNT1.a 82 to 637 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BI918100 brain TRNT1.a 87 to 855 1 to 768       768/768
(100 %)
7 diff
(99.1 %id)
CV028004 mixed TRNT1.a 141 to 798 1 to 652       652/657
(99 %)
10 diff
(98.5 %id)
TI_1948093062   TRNT1.a 141 to 692 123 to 674   fully sequenced,   552/674
(81 %)
6 diff
(99.2 %id)
TI_1948093214   TRNT1.a 141 to 692 124 to 675   fully sequenced,   552/675
(81 %)
6 diff
(99.2 %id)
AA248900   TRNT1.a 143 to 456 1 to 315       315/315
(100 %)
20 diff
(93.7 %id)
DA606717   TRNT1.a 230 to 674 2 to 446   capped   445/445
(100 %)
0 diff
(100 %id)
FN152045 breast carcinoma TRNT1.a 239 to 325 83 to 1     Submitted on the opposite strand 83/91
(91 %)
4 diff
(95.7 %id)
AA366212 Pancreas TRNT1.a 276 to 633 1 to 359       359/360
(99 %)
9 diff
(97.5 %id)
CB119929 Liver TRNT1.a 377 to 853 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
W56172 parathyroid gland, parathyroid tumor TRNT1.a 411 to 1005 1 to 599       599/601
(99 %)
25 diff
(95.9 %id)
BG111467 Bone, osteosarcoma, cell line TRNT1.a 421 to 1049 15 to 660       646/998
(64 %)
26 diff
(97.4 %id)
BU165624 melanotic melanoma, skin TRNT1.a 561 to 1406 1 to 864       864/867
(99 %)
27 diff
(96.9 %id)
BU187981 melanotic melanoma, skin TRNT1.a 561 to 1364 1 to 812       812/813
(99 %)
16 diff
(98.1 %id)
BX471146   TRNT1.a 567 to 1134 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
AV733327 pheochromocytoma TRNT1.a 608 to 1255 1 to 647       647/679
(95 %)
13 diff
(98.1 %id)
BP342175 stomach mucosa TRNT1.a 611 to 1190 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
TI_1948093063   TRNT1.a 631 to 1357 851 to 125   fully sequenced,   727/851
(85 %)
2 diff
(99.8 %id)
TI_1948093215   TRNT1.a 631 to 1357 849 to 124   fully sequenced,   726/849
(85 %)
2 diff
(99.8 %id)
EC565555 Prostate TRNT1.a 698 to 810 1 to 113       113/115
(98 %)
8 diff
(93.1 %id)
EC478471 Prostate TRNT1.a 701 to 811 1 to 110       110/110
(100 %)
4 diff
(96.4 %id)
EC573576 Prostate TRNT1.a 702 to 811 1 to 109       109/109
(100 %)
2 diff
(98.2 %id)
EC478637 Prostate TRNT1.a 703 to 811 1 to 110       110/110
(100 %)
6 diff
(94.6 %id)
EC544017 Prostate TRNT1.a 703 to 811 1 to 108       108/108
(100 %)
1 diff
(99.1 %id)
EC560820 Prostate TRNT1.a 705 to 811 1 to 107       107/107
(100 %)
0 diff
(100 %id)
BM469181 lymph, lymphoma, cell line TRNT1.a 714 to 1377 1 to 672       672/1057
(63 %)
16 diff
(98.5 %id)
CN480956 eye TRNT1.a 740 to 1347 1 to 608       608/608
(100 %)
2 diff
(99.7 %id)
AA258943 germinal center B cell TRNT1.a 759 to 1237 1 to 479       479/483
(99 %)
3 diff
(99.4 %id)
AA299098 uterus TRNT1.a 782 to 1008 23 to 249       227/249
(91 %)
8 diff
(96.8 %id)
DA884423   TRNT1.a 808 to 1383 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
DB100414 testis TRNT1.a 1029 to 1622 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
BF214253 bone marrow, from acute myelogenous leukemia TRNT1.a 1088 to 1756 1 to 677       677/771
(87 %)
34 diff
(95.6 %id)
AA312954 Bone TRNT1.a 1182 to 1388 1 to 207       207/207
(100 %)
0 diff
(100 %id)
BQ772254 Chondrosarcoma Grade II, Left Pelvis TRNT1.a 1188 to 1869 696 to 19   AAA   678/678
(100 %)
12 diff
(98.3 %id)
AA258000 germinal center B cell TRNT1.a 1424 to 1722 301 to 3       299/301
(99 %)
0 diff
(100 %id)
AW372824 breast TRNT1.a 1429 to 1579 164 to 13       152/169
(89 %)
6 diff
(96.5 %id)
BE245748 leukopheresis TRNT1.a 1525 to 2006 1 to 486       486/486
(100 %)
4 diff
(99.2 %id)
T24753   TRNT1.a 1527 to 1734 1 to 208       208/210
(99 %)
1 diff
(99.6 %id)
FN173601 breast carcinoma TRNT1.a 1553 to 1641 1 to 88       88/88
(100 %)
2 diff
(97.8 %id)
AW964986   TRNT1.a 1585 to 2214 1 to 630   tiling clone,   630/631
(99 %)
1 diff
(99.9 %id)
FN104653 breast carcinoma TRNT1.a 1739 to 1821 1 to 83       83/84
(98 %)
1 diff
(98.9 %id)
FN077862 breast carcinoma TRNT1.a 1755 to 1860 1 to 105       105/105
(100 %)
1 diff
(99.1 %id)
FN086360 breast carcinoma TRNT1.a 1837 to 1905 1 to 69       69/70
(98 %)
3 diff
(95.8 %id)
FN064121 breast carcinoma TRNT1.a 1950 to 2038 1 to 88       88/97
(90 %)
2 diff
(98.0 %id)
AA811404 germinal center B cell TRNT1.a 1998 to 2313 316 to 1       316/316
(100 %)
1 diff
(99.7 %id)
AA385187 thyroid gland TRNT1.a 2137 to 2378 1 to 242       242/242
(100 %)
0 diff
(100 %id)
AW959065   TRNT1.a 2138 to 2727 1 to 590   tiling clone,   590/591
(99 %)
2 diff
(99.7 %id)
NM_182916.2   TRNT1.b 1 to 2272 2 to 2273 P23L RefSeq, AAA   2273/2273
(100 %)
1 diff
(100.0 %id)
DB032432 testis TRNT1.b 1 to 596 2 to 598   tiling clone, capped   597/597
(100 %)
2 diff
(99.7 %id)
BM919416 pooled pancreas and spleen TRNT1.b 16 to 874 8 to 871       864/1075
(80 %)
22 diff
(98.0 %id)
DA547383   TRNT1.b 17 to 590 2 to 575   tiling clone, capped   574/574
(100 %)
5 diff
(99.2 %id)
DB013447 esophageal, tumor tissue TRNT1.b 22 to 604 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB164453 thymus TRNT1.b 22 to 591 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA565017 heart TRNT1.b 25 to 600 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA828299 placenta TRNT1.b 25 to 666 2 to 646   capped   645/645
(100 %)
9 diff
(98.7 %id)
TI_57219258   TRNT1.b 27 to 621 59 to 658       600/851
(70 %)
23 diff
(97.3 %id)
DA290531 hippocampus TRNT1.b 30 to 617 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
BG772731 testis TRNT1.b 30 to 904 1 to 869       869/896
(96 %)
35 diff
(96.1 %id)
DA860348 placenta TRNT1.b 30 to 592 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA181138 amygdala TRNT1.b 32 to 610 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA825651 pericardium TRNT1.b 32 to 609 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA240660 brain TRNT1.b 33 to 616 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA470938   TRNT1.b 33 to 588 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA552540   TRNT1.b 33 to 609 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA260830 caudate nucleus TRNT1.b 34 to 591 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA948299 Spleen TRNT1.b 34 to 617 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB011766 esophageal, tumor tissue TRNT1.b 34 to 603 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP193349 brain TRNT1.b 35 to 617 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
AK290411 cord Blood TRNT1.b 35 to 1493 1 to 1459 P23L tiling clone,   1459/1459
(100 %)
2 diff
(99.9 %id)
AU098414   TRNT1.b 35 to 334 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
AU102581   TRNT1.b 35 to 84 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP204757 coronary artery TRNT1.b 35 to 615 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
CD706500 normal nasopharynx TRNT1.b 35 to 708 33 to 706       674/706
(95 %)
11 diff
(98.5 %id)
DW411165 Liver TRNT1.b 35 to 348 18 to 330       313/330
(94 %)
8 diff
(97.6 %id)
DR001297 fetal brain TRNT1.b 35 to 691 1 to 657       657/657
(100 %)
3 diff
(99.6 %id)
DA306962 hippocampus TRNT1.b 36 to 615 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BX387515 Neuroblastoma Cot 25-normalized TRNT1.b 36 to 905 9 to 872       864/872
(99 %)
14 diff
(98.4 %id)
BX440002 brain, fetal brain TRNT1.b 36 to 900 9 to 872       864/875
(98 %)
17 diff
(98.1 %id)
BX440003 brain, fetal brain TRNT1.b 36 to 900 9 to 868       860/980
(87 %)
15 diff
(98.5 %id)
DA468983   TRNT1.b 36 to 617 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DB136285 thymus TRNT1.b 36 to 396 2 to 362   capped   361/361
(100 %)
2 diff
(99.5 %id)
BQ879199 dorsal root ganglia TRNT1.b 37 to 904 1 to 880       880/927
(94 %)
18 diff
(98.1 %id)
DA260671 caudate nucleus TRNT1.b 42 to 606 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
AL529743 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized TRNT1.b 43 to 1073 23 to 1045   fully sequenced,   1023/1045
(97 %)
12 diff
(98.9 %id)
BM926783 brain TRNT1.b 43 to 904 20 to 886       867/1030
(84 %)
15 diff
(98.6 %id)
BG505044 embryonal carcinoma, testis TRNT1.b 46 to 802 1 to 751       751/752
(99 %)
39 diff
(94.9 %id)
AW582962.
matches multiple genes
Islets of Langerhans, Pancreas TRNT1.b 46 to 674 1 to 629     also hits gene METT11D1 629/629
(100 %)
7 diff
(98.9 %id)
DA269326 caudate nucleus TRNT1.b 48 to 602 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA666332   TRNT1.b 48 to 598 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AA300574 testis TRNT1.b 57 to 356 1 to 299       299/299
(100 %)
2 diff
(99.4 %id)
AL530384 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized TRNT1.b 75 to 1135 1 to 1053       1053/1053
(100 %)
30 diff
(97.2 %id)
CR622655 Placenta Cot 25-normalized TRNT1.b 735 to 2180 1 to 1446   tiling clone,   1446/1446
(100 %)
0 diff
(100 %id)
BX336658 Placenta Cot 25-normalized TRNT1.b 735 to 1728 1 to 999       999/999
(100 %)
17 diff
(98.3 %id)
BX402402 Placenta Cot 25-normalized TRNT1.b 735 to 1799 1 to 1064       1064/1070
(99 %)
20 diff
(98.2 %id)
AA357755 Prostate TRNT1.b 756 to 1086 3 to 336       336/336
(100 %)
3 diff
(99.2 %id)
BF572543 melanotic melanoma, high MDR, skin TRNT1.b 951 to 1691 1 to 745       745/772
(96 %)
26 diff
(96.7 %id)
BF216656 brain, glioblastoma TRNT1.b 959 to 1684 1 to 709       709/790
(89 %)
31 diff
(96.1 %id)
BF244345 brain, glioblastoma TRNT1.b 989 to 1669 1 to 680       680/697
(97 %)
7 diff
(99.0 %id)
BF217932 brain, glioblastoma TRNT1.b 989 to 1738 1 to 751       751/809
(92 %)
42 diff
(94.9 %id)
BF106331 lung TRNT1.b 1035 to 1743 1 to 710       710/804
(88 %)
32 diff
(96.1 %id)
AL529742 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized TRNT1.b 1043 to 2067 1032 to 15   fully sequenced,   1018/1032
(98 %)
19 diff
(98.2 %id)
AV703724 adrenal gland TRNT1.b 1102 to 1724 1 to 621       621/622
(99 %)
8 diff
(98.8 %id)
AL563730 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized TRNT1.b 1158 to 2191 1045 to 1       1045/1166
(89 %)
27 diff
(97.7 %id)
BX336657 Placenta Cot 25-normalized TRNT1.b 1162 to 2180 1021 to 1       1021/1021
(100 %)
15 diff
(98.6 %id)
BX440001 brain, fetal brain TRNT1.b 1163 to 2182 1012 to 1       1012/1015
(99 %)
17 diff
(98.4 %id)
W19899 parathyroid gland, parathyroid tumor TRNT1.b 1172 to 1812 1 to 634       634/659
(96 %)
21 diff
(96.9 %id)
BQ722111 sympathetic trunk TRNT1.b 1173 to 2062 1 to 898       898/906
(99 %)
9 diff
(99.1 %id)
BX402401 Placenta Cot 25-normalized TRNT1.b 1176 to 2180 998 to 1       998/1016
(98 %)
11 diff
(99.0 %id)
BX387514 Neuroblastoma Cot 25-normalized TRNT1.b 1230 to 2189 963 to 1       963/969
(99 %)
24 diff
(97.6 %id)
AW965992   TRNT1.b 1231 to 1677 1 to 445       445/445
(100 %)
4 diff
(99.2 %id)
BU930498 Prostate TRNT1.b 1366 to 2161 1 to 807       807/807
(100 %)
15 diff
(98.2 %id)
TI_149299181   TRNT1.b 1417 to 2211 873 to 88   AAA   786/793
(99 %)
17 diff
(97.9 %id)
AW584026 Islets of Langerhans, Pancreas TRNT1.b 1438 to 1862 425 to 1       425/425
(100 %)
0 diff
(100 %id)
BE888255 leiomyosarcoma, uterus TRNT1.b 1547 to 2093 1 to 551       551/551
(100 %)
3 diff
(99.5 %id)
AA703915 bone marrow stroma TRNT1.b 1549 to 2098 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
TI_149277433   TRNT1.b 1557 to 2272 815 to 96   tiling clone, AAA   720/724
(99 %)
13 diff
(98.3 %id)
AA744258 germinal center B cell TRNT1.b 1575 to 1946 372 to 1       372/372
(100 %)
1 diff
(99.8 %id)
DB372771 placenta TRNT1.b 1606 to 2103 501 to 1       501/502
(99 %)
9 diff
(98.3 %id)
BM975635 lung, Primary Lung Cystic Fibrosis EpithelialCells TRNT1.b 1639 to 2211 591 to 19   AAA   573/573
(100 %)
1 diff
(99.9 %id)
AI889895 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus TRNT1.b 1655 to 2103 453 to 1       453/453
(100 %)
3 diff
(99.4 %id)
BE552215 pooled germ cell tumors TRNT1.b 1667 to 2225 559 to 1       559/559
(100 %)
2 diff
(99.7 %id)
AI889904 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus TRNT1.b 1671 to 2103 437 to 1       437/437
(100 %)
3 diff
(99.4 %id)
AA557537 colon TRNT1.b 1679 to 2104 430 to 1       430/430
(100 %)
3 diff
(99.4 %id)
BP423552 small intestine TRNT1.b 1684 to 2212 529 to 1       529/529
(100 %)
1 diff
(99.9 %id)
BF059440 pooled germ cell tumors TRNT1.b 1693 to 2222 530 to 1       530/530
(100 %)
2 diff
(99.7 %id)
BX104423 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus TRNT1.b 1696 to 2103 426 to 15   AAA   412/412
(100 %)
3 diff
(99.3 %id)
CF619083 Pooled Chondrosarcoma Tumor cells TRNT1.b 1716 to 2208 46 to 543       498/994
(50 %)
5 diff
(99.5 %id)
AA508101 Prostate TRNT1.b 1725 to 2168 8 to 455       448/455
(98 %)
6 diff
(98.7 %id)
BU677666 lung TRNT1.b 1730 to 2272 562 to 19   AAA   544/544
(100 %)
4 diff
(99.3 %id)
DB523627.
matches multiple genes
testis TRNT1.b 1746 to 2179 438 to 1     also hits gene CRBN 438/440
(99 %)
3 diff
(99.4 %id)
DB527490.
matches multiple genes
testis TRNT1.b 1746 to 2210 469 to 1     also hits gene CRBN 469/471
(99 %)
3 diff
(99.4 %id)
AI140921 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus TRNT1.b 1768 to 2214 450 to 1       450/453
(99 %)
4 diff
(99.2 %id)
AI926481 poorly differentiated adenocarcinoma withsignet ring cell features, stomach TRNT1.b 1771 to 2274 524 to 1       524/524
(100 %)
7 diff
(98.7 %id)
AI198792 lung TRNT1.b 1789 to 2212 426 to 3       424/426
(99 %)
0 diff
(100 %id)
AI222307 pooled TRNT1.b 1798 to 2213 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
AI926508 poorly differentiated adenocarcinoma withsignet ring cell features, stomach TRNT1.b 1799 to 2275 501 to 5   tiling clone,   497/501
(99 %)
0 diff
(100 %id)
BF431025 Kidney TRNT1.b 1799 to 2209 417 to 3       415/417
(99 %)
0 diff
(100 %id)
BF593559 Kidney TRNT1.b 1818 to 2214 398 to 2       397/398
(99 %)
0 diff
(100 %id)
AI699153 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors TRNT1.b 1853 to 2103 276 to 25   AAA   252/252
(100 %)
3 diff
(98.9 %id)
AI400233 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus TRNT1.b 1874 to 2211 354 to 17   AAA   338/338
(100 %)
1 diff
(99.8 %id)
AI832176 colon, colon tumor, RER+ TRNT1.b 1911 to 2175 1 to 269     Submitted on the opposite strand 269/269
(100 %)
5 diff
(98.2 %id)
CN292586 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 TRNT1.b 1914 to 2211 1 to 299   AAA   299/299
(100 %)
6 diff
(98.0 %id)
AI630644 blood TRNT1.b 1933 to 2211 1 to 283   AAA   283/283
(100 %)
3 diff
(99.0 %id)
BF223413 pooled germ cell tumors TRNT1.b 1934 to 2275 366 to 6       361/366
(98 %)
0 diff
(100 %id)
AI718296 aorta TRNT1.b 1947 to 2098 156 to 1       156/156
(100 %)
3 diff
(98.1 %id)
AI266510 lung TRNT1.b 1949 to 2212 264 to 1       264/264
(100 %)
1 diff
(99.7 %id)
DA216069 brain TRNT1.b 1982 to 2278 2 to 317   capped   316/316
(100 %)
9 diff
(97.2 %id)
N91246 parathyroid gland, parathyroid tumor TRNT1.b 1988 to 2211 228 to 1       228/228
(100 %)
3 diff
(98.7 %id)
AA053503 colon, tumor TRNT1.c 1 to 374 1 to 381   tiling clone,   381/381
(100 %)
19 diff
(95.1 %id)
AA053015 colon, tumor TRNT1.c 1764 to 1876 113 to 1   tiling clone,   113/114
(99 %)
0 diff
(100 %id)
AL834397 brain TRNT1.d 1 to 2177 1 to 2196 P23L tiling clone, available from DKFZ, AAA   2196/2196
(100 %)
12 diff
(99.5 %id)
DA753141   TRNT1.e 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
3 diff
(99.5 %id)
DA815160   TRNT1.e 4 to 479 2 to 479   tiling clone, capped   476/478
(99 %)
3 diff
(99.4 %id)
DB459794.
matches multiple genes
testis TRNT1.e 5 to 448 1 to 444     also hits gene CRBN 444/444
(100 %)
1 diff
(99.8 %id)
BM750994 Ascites, stomach TRNT1.e 9 to 563 1 to 554       554/554
(100 %)
2 diff
(99.7 %id)
DA428501 colon TRNT1.e 10 to 571 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB012643 esophageal, tumor tissue TRNT1.e 10 to 540 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DA474915   TRNT1.e 13 to 572 2 to 561   capped   560/564
(99 %)
5 diff
(99.2 %id)
BI458709 testis TRNT1.e 14 to 577 1 to 570       572/628
(91 %)
48 diff
(92.4 %id)
DA040937 bladder TRNT1.e 18 to 581 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA600475   TRNT1.e 18 to 571 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA557193   TRNT1.e 20 to 540 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DB179673 kidney, tumor tissue TRNT1.e 21 to 560 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA117622 cerebellum TRNT1.e 24 to 587 2 to 565 P23L capped   564/564
(100 %)
1 diff
(99.9 %id)
CD684750 normal nasopharynx TRNT1.e 32 to 563 20 to 550       531/550
(96 %)
7 diff
(98.8 %id)
BI757637 brain TRNT1.e 32 to 572 1 to 545       545/777
(70 %)
15 diff
(98.1 %id)
BF209037 bone marrow, from chronic myelogenous leukemia TRNT1.e 42 to 561 1 to 525       525/869
(60 %)
24 diff
(97.3 %id)
AI074113 senescent fibroblast TRNT1.e 204 to 650 452 to 6   tiling clone,   447/452
(98 %)
0 diff
(100 %id)
AI383100 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus TRNT1.e 288 to 643 356 to 1       356/356
(100 %)
5 diff
(98.6 %id)
DA407208 thalamus TRNT1.f 1 to 540 2 to 541 P23L tiling clone, capped   540/540
(100 %)
1 diff
(99.9 %id)
BI062461 uterus_tumor TRNT1.f 54 to 173 1 to 120       120/120
(100 %)
0 diff
(100 %id)
BQ435447 leiomyosarcoma, uterus TRNT1.g 1 to 837 1 to 852 exact tiling clone,   852/874
(97 %)
8 diff
(99.1 %id)
CN291095 embryonic stem cells, DMSO-treated H9 cellline TRNT1.h-u 1 to 585 1 to 585 exact tiling clone,   585/585
(100 %)
2 diff
(99.7 %id)
DB527336.
matches multiple genes
testis TRNT1.h-u 172 to 637 466 to 1     also hits gene CRBN 466/466
(100 %)
4 diff
(99.2 %id)
DB541500.
matches multiple genes
hippocampus TRNT1.h-u 440 to 898 459 to 1     also hits gene CRBN 459/459
(100 %)
3 diff
(99.4 %id)
DA197354 brain TRNT1.h-u 451 to 1003 2 to 554   tiling clone, capped   553/553
(100 %)
3 diff
(99.5 %id)
CF994918 Human Placenta, placenta TRNT1.h-u 456 to 1211 27 to 788       762/788
(96 %)
10 diff
(98.8 %id)
DB536055 hippocampus TRNT1.h-u 505 to 967 462 to 1       462/463
(99 %)
33 diff
(92.9 %id)
DB562763.
matches multiple genes
hypothalamus TRNT1.h-u 505 to 938 435 to 2     also hits gene CRBN 434/436
(99 %)
0 diff
(100 %id)
DB572515.
matches multiple genes
hypothalamus TRNT1.h-u 507 to 990 484 to 1     also hits gene CRBN 484/486
(99 %)
1 diff
(99.8 %id)
DB560624 hypothalamus TRNT1.h-u 735 to 1171 438 to 1       438/438
(100 %)
2 diff
(99.6 %id)
BM144656 leukopheresis TRNT1.h-u 747 to 1189 16 to 458   AAA   443/458
(96 %)
7 diff
(98.5 %id)
DB527323.
matches multiple genes
testis TRNT1.h-u 749 to 1201 453 to 1     also hits gene CRBN 453/466
(97 %)
1 diff
(99.8 %id)
DB540576.
matches multiple genes
hippocampus TRNT1.h-u 749 to 1212 464 to 1     also hits gene CRBN 464/482
(96 %)
2 diff
(99.6 %id)
DB543027.
matches multiple genes
hippocampus TRNT1.h-u 749 to 1214 466 to 1     also hits gene CRBN 466/484
(96 %)
3 diff
(99.4 %id)
BE041830 pooled TRNT1.h-u 749 to 1164 13 to 428       416/431
(96 %)
2 diff
(99.6 %id)
BP425095 small intestine TRNT1.h-u 751 to 1032 281 to 1       281/281
(100 %)
2 diff
(99.3 %id)
DB548331 hippocampus TRNT1.h-u 752 to 1178 428 to 2       427/428
(99 %)
0 diff
(100 %id)
AW976349   TRNT1.h-u 753 to 1435 1 to 688   tiling clone,   688/688
(100 %)
11 diff
(98.5 %id)
DB520038.
matches multiple genes
testis TRNT1.h-u 753 to 1208 456 to 1     also hits gene CRBN 456/457
(99 %)
1 diff
(99.8 %id)
BF903018 marrow TRNT1.h-u 824 to 1214 26 to 415       390/426
(91 %)
8 diff
(98.2 %id)
BU948951 Pancreas, Purified pancreatic islet TRNT1.h-u 834 to 1394 10 to 566       557/651
(85 %)
35 diff
(94.7 %id)
FN049213 breast carcinoma TRNT1.h-u 1054 to 1171 1 to 119       119/119
(100 %)
1 diff
(99.2 %id)
DA808019 brain TRNT1.h-u 1113 to 1669 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
Z28559 leg muscle, skeletal muscle TRNT1.h-u 1261 to 1430 1 to 170   tiling clone,   170/170
(100 %)
4 diff
(97.7 %id)
BU948702 Pancreas, Purified pancreatic islet TRNT1.h-u 2132 to 2625 497 to 1   tiling clone,   497/497
(100 %)
4 diff
(99.2 %id)
AA342185 Spleen TRNT1.h-u 2223 to 2624 404 to 1       404/405
(99 %)
8 diff
(98.1 %id)
AA342180 Spleen TRNT1.h-u 2280 to 2590 311 to 1   tiling clone,   311/311
(100 %)
2 diff
(99.4 %id)
AI572013 adenocarcinoma, Pancreas TRNT1.h-u 2316 to 2631 319 to 2       318/319
(99 %)
0 diff
(100 %id)
AI367526 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus TRNT1.h-u 2323 to 2625 304 to 1   tiling clone,   304/304
(100 %)
3 diff
(99.1 %id)
BP396842 pancreatic islet TRNT1.h-u 2370 to 2688 319 to 1   tiling clone,   319/319
(100 %)
1 diff
(99.7 %id)
BE927368 colon TRNT1.h-u 2483 to 2899 435 to 19   tiling clone,   417/437
(95 %)
0 diff
(100 %id)
BE940680 uterus_tumor TRNT1.h-u 2606 to 2832 223 to 2       222/229
(96 %)
0 diff
(100 %id)
BE003815 breast_normal TRNT1.h-u 2745 to 3104 358 to 2   tiling clone, Submitted on the opposite strand 357/377
(94 %)
0 diff
(100 %id)
TI_149279146   TRNT1.h-u 2843 to 3638 879 to 82   tiling clone, AAA   798/1159
(68 %)
17 diff
(98.6 %id)
DB303769 brain TRNT1.h-u 3075 to 3643 569 to 1       569/569
(100 %)
1 diff
(99.9 %id)
BU657924 blood TRNT1.h-u 3075 to 3633 568 to 10     Submitted on the opposite strand 559/568
(98 %)
0 diff
(100 %id)
DB304716 brain TRNT1.h-u 3077 to 3643 567 to 1       567/567
(100 %)
1 diff
(99.9 %id)
BG149765 carcinoid, lung TRNT1.h-u 3077 to 3644 570 to 3       568/570
(99 %)
0 diff
(100 %id)
BU678777 lung, Primary Lung Epithelial Cells TRNT1.h-u 3107 to 3635 547 to 19   AAA   529/529
(100 %)
1 diff
(99.9 %id)
AW022201 cochlea, ear TRNT1.h-u 3118 to 3585 1 to 471       471/482
(97 %)
5 diff
(99.0 %id)
AI377880 pooled TRNT1.h-u 3136 to 3636 501 to 1       501/501
(100 %)
0 diff
(100 %id)
AI654001 serous papillary carcinoma, high grade, 2pooled tumors, uterus TRNT1.h-u 3151 to 3643 504 to 12   AAA   493/493
(100 %)
0 diff
(100 %id)
AI688735 pooled TRNT1.h-u 3151 to 3637 490 to 4       487/490
(99 %)
0 diff
(100 %id)
AA897136 pooled TRNT1.h-u 3207 to 3637 432 to 2       431/432
(99 %)
0 diff
(100 %id)
AI924944 poorly differentiated adenocarcinoma withsignet ring cell features, stomach TRNT1.h-u 3232 to 3630 423 to 25   AAA   399/399
(100 %)
5 diff
(98.8 %id)
BE770784 prostate_tumor TRNT1.h-u 3234 to 3458 3 to 225       223/226
(98 %)
10 diff
(95.6 %id)
AI879872 colon TRNT1.h-u 3241 to 3644 406 to 3   tiling clone,   404/406
(99 %)
0 diff
(100 %id)
AW166630 serous papillary carcinoma, high grade, 2pooled tumors, uterus TRNT1.h-u 3252 to 3637 390 to 1       390/390
(100 %)
5 diff
(98.8 %id)
AI394151 pooled TRNT1.h-u 3271 to 3643 391 to 19   AAA   373/373
(100 %)
2 diff
(99.5 %id)
AA902440 carcinoid, lung TRNT1.h-u 3284 to 3642 359 to 1       359/359
(100 %)
0 diff
(100 %id)
H61142 ovarian tumor, ovary TRNT1.h-u 3292 to 3627 361 to 18       344/364
(94 %)
0 diff
(100 %id)
AA783022   TRNT1.h-u 3294 to 3642 352 to 4       349/352
(99 %)
0 diff
(100 %id)
BE672548 carcinoid, lung TRNT1.h-u 3424 to 3635 229 to 18   AAA   212/212
(100 %)
0 diff
(100 %id)
BX506939 Liver TRNT1.i 1 to 590 1 to 590   tiling clone,   590/590
(100 %)
4 diff
(99.4 %id)
BQ440131 eye, retinoblastoma TRNT1.i 23 to 700 11 to 692   tiling clone,   682/858
(79 %)
7 diff
(99.2 %id)
AK124137 testis TRNT1.i 56 to 1971 1 to 1923 P23L tiling clone, available from FLJ,   1923/1923
(100 %)
6 diff
(99.7 %id)
DB055002 testis TRNT1.i 57 to 614 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BU183621 melanotic melanoma, skin TRNT1.i 62 to 831 11 to 789       779/826
(94 %)
15 diff
(98.2 %id)
CA865815 Pancreas, Purified pancreatic islet TRNT1.i 1387 to 1916 1 to 530   fully sequenced,   530/530
(100 %)
4 diff
(99.3 %id)
CA950036 Pancreas, Purified pancreatic islet TRNT1.i 1390 to 1965 1 to 576   fully sequenced,   576/576
(100 %)
1 diff
(99.9 %id)
BG483367 lung TRNT1.i 1627 to 2179 564 to 1     Submitted on the opposite strand 564/653
(86 %)
17 diff
(97.4 %id)
CA865559 Pancreas, Purified pancreatic islet TRNT1.i 1886 to 2388 503 to 1   tiling clone, fully sequenced,   503/503
(100 %)
4 diff
(99.3 %id)
AI032478 liver and spleen TRNT1.i 1920 to 2388 468 to 1       468/468
(100 %)
3 diff
(99.4 %id)
CA943841 Pancreas, Purified pancreatic islet TRNT1.i 1935 to 2388 454 to 1   fully sequenced,   454/454
(100 %)
7 diff
(98.5 %id)
R91427 liver and spleen TRNT1.i 1936 to 2377 444 to 1   tiling clone,   444/445
(99 %)
8 diff
(98.3 %id)
BX279675 brain, hypothalamus TRNT1.i 1959 to 2411 457 to 5   tiling clone, Submitted on the opposite strand 453/457
(99 %)
7 diff
(98.5 %id)
AI240761 liver and spleen TRNT1.i 1959 to 2389 431 to 1       431/431
(100 %)
6 diff
(98.7 %id)
N44129 melanocyte TRNT1.i 2009 to 2137 1 to 129   fully sequenced,   129/129
(100 %)
0 diff
(100 %id)
BX506940 Liver TRNT1.i 2069 to 2316 250 to 3       248/250
(99 %)
0 diff
(100 %id)
N36123 melanocyte TRNT1.i 2107 to 2388 283 to 1   fully sequenced,   283/283
(100 %)
2 diff
(99.3 %id)
BC005184 Bone marrow, chronic myelogenous leukemia TRNT1.j 1 to 975 1 to 982 P23L tiling clone, available from MGC, AAA   982/982
(100 %)
6 diff
(99.4 %id)
CB989932 Human Placenta, placenta TRNT1.j 1 to 730 28 to 765 P23L     738/769
(95 %)
14 diff
(98.2 %id)
CF995069 Human Placenta, placenta TRNT1.j 1 to 756 28 to 794 P23L     767/836
(91 %)
14 diff
(98.4 %id)
BP326487 prostata TRNT1.j 1 to 572 1 to 579 P23L     579/579
(100 %)
4 diff
(99.4 %id)
CD684249 normal nasopharynx TRNT1.j 2 to 553 1 to 559 P23L tiling clone,   559/559
(100 %)
5 diff
(99.2 %id)
CB052373 leiomyosarcoma, soft tissue TRNT1.j 7 to 441 1 to 442 P23L     442/442
(100 %)
11 diff
(97.6 %id)
BE048126 brain, tumor, 5 pooled (see description) TRNT1.j 13 to 473 1 to 468 P23L fully sequenced,   468/468
(100 %)
4 diff
(99.2 %id)
BI912178 leukocyte TRNT1.j 13 to 757 22 to 765 P23L     744/765
(97 %)
29 diff
(96.3 %id)
TI_57238037   TRNT1.j 13 to 757 22 to 765 P23L     744/765
(97 %)
29 diff
(96.3 %id)
BG715142 brain, hypothalamus TRNT1.j 14 to 730 1 to 728 P23L     728/1314
(55 %)
32 diff
(97.6 %id)
BI603277 brain, hypothalamus TRNT1.j 14 to 925 1 to 909 P23L     909/928
(97 %)
14 diff
(98.5 %id)
BI598658 brain, hypothalamus TRNT1.j 14 to 671 1 to 665 P23L     665/665
(100 %)
11 diff
(98.4 %id)
BG818108 anaplastic oligodendroglioma with 1p/19qloss, brain TRNT1.j 16 to 760 1 to 750 W8G H9T R10G P11Q V12C ...     750/752
(99 %)
10 diff
(98.7 %id)
TI_45210711   TRNT1.j 19 to 925 156 to 1059 P23L     904/1078
(83 %)
15 diff
(98.7 %id)
TI_45213767   TRNT1.j 19 to 671 91 to 750 P23L     660/750
(88 %)
12 diff
(98.4 %id)
BE563960 bone marrow, from chronic myelogenous leukemia TRNT1.j 20 to 696 1 to 682 P23L available from MGC,   682/684
(99 %)
11 diff
(98.4 %id)
CV030010 mixed TRNT1.j 68 to 240 1 to 173       173/339
(51 %)
2 diff
(99.5 %id)
BE858780 brain, glioblastoma (pooled) TRNT1.j 136 to 625 500 to 4   tiling clone,   497/500
(99 %)
0 diff
(100 %id)
BG623967 placenta TRNT1.j 246 to 943 1 to 700       700/706
(99 %)
7 diff
(99.1 %id)
AI471027 brain, glioblastoma (pooled) TRNT1.j 355 to 625 277 to 4       274/277
(98 %)
0 diff
(100 %id)
AI863438 brain, tumor, 5 pooled (see description) TRNT1.j 448 to 975 558 to 31   tiling clone, fully sequenced, AAA   528/528
(100 %)
0 diff
(100 %id)
CB052372 leiomyosarcoma, soft tissue TRNT1.j 455 to 957 539 to 37   AAA   503/503
(100 %)
0 diff
(100 %id)
BX090253 brain, tumor, 5 pooled (see description) TRNT1.j 511 to 975 479 to 15   AAA   465/465
(100 %)
1 diff
(99.8 %id)
AI095700 uterus TRNT1.j 518 to 975 458 to 1       458/458
(100 %)
0 diff
(100 %id)
AI095914 uterus TRNT1.j 559 to 975 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AA740645 Kidney TRNT1.j 582 to 976 397 to 3       395/397
(99 %)
0 diff
(100 %id)
AV741857 cord Blood TRNT1.j 655 to 990 30 to 353   AAA   324/353
(91 %)
6 diff
(98.4 %id)
CN287808 embryonic stem cells, cell lines H1, H7, andH9 TRNT1.k 1 to 531 1 to 532 exact tiling clone,   532/533
(99 %)
6 diff
(98.9 %id)
CB956630 Pooled-Glandular TRNT1.k 180 to 912 1 to 740 exact tiling clone,   740/740
(100 %)
16 diff
(97.9 %id)
DA041296 bladder TRNT1.l 1 to 519 2 to 520 P23L tiling clone, capped   519/519
(100 %)
4 diff
(99.3 %id)
AA568557 colon, colon tumor RER+ TRNT1.l 228 to 604 387 to 11   AAA   377/377
(100 %)
9 diff
(97.7 %id)
AL706318 human skeletal muscle TRNT1.l 256 to 856 1 to 601   tiling clone,   601/601
(100 %)
6 diff
(99.1 %id)
BU172136 melanotic melanoma, skin TRNT1.m 1 to 850 1 to 857 exact tiling clone,   857/878
(97 %)
18 diff
(98.0 %id)
DA716108   TRNT1.n 1 to 543 2 to 544 R16X P23L tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
DA665688   TRNT1.n 52 to 533 2 to 483   capped   482/482
(100 %)
3 diff
(99.4 %id)
AV738423 cord Blood TRNT1.o-u 1 to 425 38 to 452 A2G tiling clone,   415/455
(91 %)
6 diff
(98.7 %id)
ES313234 beard hair, skin TRNT1.p 1 to 213 1 to 210 R16S W17E S18* tiling clone,   210/210
(100 %)
4 diff
(98.1 %id)
EH352705   TRNT1.q-u 1 to 77 1 to 77 exact tiling clone,   77/90
(85 %)
0 diff
(100 %id)
BE768239 prostate_tumor Gene TRNT1, variant not shown         This clone was ignored    
EC486294 Prostate Gene TRNT1, variant not shown         This clone was ignored    
N40119 placenta Gene TRNT1, variant not shown         This clone was ignored    
N70375 liver and spleen Gene TRNT1, variant not shown              
W05016 liver and spleen Gene TRNT1, variant not shown              
DB377336 placenta Gene TRNT1, variant not shown         This clone was ignored    
DA831605 placenta Gene TRNT1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m, .n, .o-u, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C