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Gene NTRK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
58 supporting clones for gene NTRK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB068864 testis .a 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DB636278 testis .a 218 to 335 1 to 118       118/126
(93 %)
1 diff
(99.3 %id)
M23102   .a 400 to 3100 1 to 2701 V289L C326S tiling clone,   2701/2701
(100 %)
8 diff
(99.8 %id)
BC136554 Testicle, PCR rescued clones .a 420 to 2929 1 to 2510 L16M     2510/2510
(100 %)
2 diff
(100.0 %id)
BC144239 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 420 to 2928 1 to 2509 exact tiling clone,   2509/2509
(100 %)
1 diff
(100.0 %id)
DA607648   .a 426 to 986 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
TI_1971556081   .a 458 to 1693 1229 to 6       1224/1303
(93 %)
29 diff
(97.8 %id)
AL557329 T cells (Jurkat cell line), T cells from T cell leukemia .a 464 to 1362 1 to 890       890/897
(99 %)
24 diff
(97.4 %id)
NM_001012331.1   .a 464 to 3100 1 to 2637   RefSeq, AAA   2637/2637
(100 %)
0 diff
(100 %id)
DA482617   .a 480 to 1054 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA610389   .a 480 to 1023 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA613984   .a 480 to 1046 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA751346   .a 480 to 1055 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB044219 testis .a 480 to 1016 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB259868 uterus .a 480 to 1058 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA482636   .a 482 to 1056 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BI758018 brain .a 521 to 1270 1 to 757   available from MGC,   757/757
(100 %)
8 diff
(99.0 %id)
TI_57221367   .a 521 to 1270 28 to 784       757/784
(96 %)
10 diff
(98.8 %id)
DA311327 hippocampus .a 666 to 1222 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
AL579391 T cells (Jurkat cell line), T cells from T cell leukemia .a 2118 to 2600 942 to 463       480/578
(83 %)
19 diff
(96.8 %id)
NM_002529.3   .b 1 to 2660 1 to 2660 exact RefSeq,   2660/2663
(99 %)
5 diff
(99.9 %id)
AK312704   .b 16 to 2447 1 to 2432 exact tiling clone,   2432/2432
(100 %)
1 diff
(100.0 %id)
BC062580 Brain, adult, 6 pooled whole brains .b 58 to 2655 1 to 2598   tiling clone, available from MGC, AAA   2598/2598
(100 %)
1 diff
(100.0 %id)
X03541   .b 1241 to 2649 886 to 2293       1408/2301
(61 %)
14 diff
(99.4 %id)
X85960   .b 1249 to 2655 596 to 2002       1407/2010
(70 %)
13 diff
(99.4 %id)
X06704   .b 1251 to 2655 154 to 1558   tiling clone, AAA   1405/1558
(90 %)
10 diff
(99.4 %id)
AK290759   .c 1 to 2491 2 to 2492 P19A A34S tiling clone,   2492/2492
(100 %)
3 diff
(99.9 %id)
AL530281 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .c 15 to 1079 1 to 1045   tiling clone,   1046/1091
(95 %)
49 diff
(95.6 %id)
AL563691 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .c 1541 to 2594 1041 to 1   tiling clone,   980/1045
(93 %)
48 diff
(95.5 %id)
CD673237 eye, Iris .d 1 to 510 1 to 510   tiling clone,   510/510
(100 %)
0 diff
(100 %id)
DB265639 uterus .d 25 to 611 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
CR625585 Placenta Cot 25-normalized .d 95 to 2609 1 to 2515 exact tiling clone,   2515/2515
(100 %)
0 diff
(100 %id)
NM_001007792.1   .d 95 to 2665 1 to 2571 exact RefSeq, AAA   2571/2571
(100 %)
0 diff
(100 %id)
BX340145 Placenta Cot 25-normalized .d 120 to 1095 26 to 1000       975/1000
(97 %)
13 diff
(98.7 %id)
TI_1971554875   .d 311 to 1417 8 to 1108       1101/1268
(86 %)
12 diff
(99.1 %id)
X62947   .d 1520 to 2665 589 to 1734   AAA   1146/1734
(66 %)
11 diff
(99.4 %id)
BM727488 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2090 to 2590 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
BM931980 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2099 to 2665 1 to 568   tiling clone, fully sequenced, AAA   566/566
(100 %)
1 diff
(99.9 %id)
DB351810 uterus .d 2131 to 2664 534 to 1       534/534
(100 %)
0 diff
(100 %id)
BM685020 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2177 to 2665 507 to 19   fully sequenced, AAA   489/489
(100 %)
0 diff
(100 %id)
AK126428 uterus .e 1 to 2508 1 to 2508 E285G tiling clone, available from FLJ, AAA   2508/2508
(100 %)
5 diff
(99.9 %id)
TI_1971556079   .e 787 to 2050 1263 to 10   tiling clone,   1254/1312
(95 %)
20 diff
(98.5 %id)
BX389843 Placenta Cot 25-normalized .e 827 to 1736 1 to 898       898/903
(99 %)
35 diff
(96.2 %id)
BF855847 prostate_normal .e 933 to 1376 449 to 6     Submitted on the opposite strand 444/449
(98 %)
1 diff
(99.8 %id)
BG120028 adenocarcinoma, cell line, Liver .e 946 to 1541 1 to 596       596/994
(59 %)
13 diff
(98.7 %id)
BX350284 Placenta Cot 25-normalized .e 947 to 1823 878 to 1       878/878
(100 %)
13 diff
(98.6 %id)
CN418518 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 1052 to 1748 1 to 695       695/695
(100 %)
2 diff
(99.8 %id)
TI_2194644810   .e 1412 to 2338 15 to 941       927/1273
(72 %)
9 diff
(99.3 %id)
TI_2194644606   .e 1429 to 1684 30 to 286       257/287
(89 %)
19 diff
(93.4 %id)
BX340144 Placenta Cot 25-normalized .e 1465 to 2453 983 to 1   tiling clone,   983/986
(99 %)
16 diff
(98.4 %id)
BG110843 Bone, osteosarcoma, cell line .e 1604 to 2262 1 to 658       658/658
(100 %)
2 diff
(99.7 %id)
TI_2194643406   .e 2115 to 2341 283 to 57     Submitted on the opposite strand 227/283
(80 %)
0 diff
(100 %id)
AA629118   .e 2170 to 2507 336 to 1       336/336
(100 %)
19 diff
(94.4 %id)
CR936794 whole fetus, 7-11 weeks .f 1 to 3052 1 to 3054 E465* tiling clone, AAA   3054/3054
(100 %)
4 diff
(99.9 %id)
DA611034   .f 1353 to 1904 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
TI_2194644811   .g 1 to 1220 12 to 1219 H36L S298L R299G W300G L301C ... tiling clone,   1208/1317
(91 %)
31 diff
(97.7 %id)
DA569409 whole embryo, mainly head .h 1 to 797 2 to 794   tiling clone, capped   793/829
(95 %)
9 diff
(99.0 %id)
AU144696 whole embryo, mainly head .h 1282 to 1818 540 to 4   tiling clone,   537/540
(99 %)
11 diff
(98.0 %id)
DB507100 testis .i 1 to 659 1 to 659 V5C W6G S36W tiling clone, Submitted on the opposite strand 659/659
(100 %)
5 diff
(99.3 %id)
CR980375 T-Lymphocytes .j 1 to 645 1 to 647 exact tiling clone,   647/647
(100 %)
2 diff
(99.7 %id)
BQ716999 sympathetic trunk .k-u 1 to 783 1 to 792 A83X C84L W85L A87G L88P ... tiling clone,   792/855
(92 %)
20 diff
(97.7 %id)
DA013446 adrenal gland .l 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
BI045722 prostate_normal .m-u 1 to 451 26 to 475 G75A tiling clone,   450/475
(94 %)
6 diff
(98.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI