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Gene TRIM9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
417 supporting clones for gene TRIM9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK055388 brain .a 1 to 3311 2 to 3310 A314V Q384R tiling clone, available from FLJ,   3310/3310
(100 %)
5 diff
(99.9 %id)
DA514076 brain .a 1 to 481 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
DB316664 brain .a 2775 to 3311 537 to 1   tiling clone,   537/537
(100 %)
4 diff
(99.3 %id)
BC063872 Uterus, leiomyosarcoma .b 1 to 5281 1 to 5281 L653F tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 5281/5281
(100 %)
3 diff
(100.0 %id)
BQ945829 leiomyosarcoma, uterus .b 2 to 739 1 to 746       746/921
(80 %)
12 diff
(98.7 %id)
DB484075 hippocampus .b 89 to 588 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
BX395420 Neuroblastoma Cot 50-normalized .b 192 to 1292 1 to 1087       1087/1087
(100 %)
27 diff
(97.6 %id)
NM_015163.5   .b 358 to 5281 1 to 4924 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 4924/4924
(100 %)
0 diff
(100 %id)
DA101991 cerebellum .b 409 to 964 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA331883 hippocampus .b 626 to 1187 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA389413 thalamus .b 672 to 1232 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA330651 hippocampus .b 734 to 1291 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA492214 brain .b 734 to 1306 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA795935 brain .b 734 to 1036 2 to 304   capped   303/303
(100 %)
0 diff
(100 %id)
DA111076 cerebellum .b 739 to 1313 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA334878 hippocampus .b 745 to 1265 2 to 522   capped   521/521
(100 %)
3 diff
(99.5 %id)
DA335128 hippocampus .b 745 to 1333 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA110502 cerebellum .b 773 to 1294 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA326094 hippocampus .b 802 to 1265 2 to 466   capped   465/465
(100 %)
2 diff
(99.6 %id)
BX367779 Neuroblastoma Cot 50-normalized .b 894 to 1749 1 to 855       855/855
(100 %)
12 diff
(98.6 %id)
DA792102 brain .b 894 to 1373 2 to 481   capped   480/480
(100 %)
0 diff
(100 %id)
DA391779 thalamus .b 904 to 1478 2 to 575   capped   574/578
(99 %)
2 diff
(99.7 %id)
DA496358 brain .b 904 to 1443 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA777108 brain .b 904 to 1483 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA782684 brain .b 904 to 1418 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA338594 hippocampus .b 906 to 1502 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DR000352 fetal brain .b 916 to 1436 9 to 529       521/529
(98 %)
6 diff
(98.9 %id)
DA338927 hippocampus .b 932 to 1418 2 to 490   capped   489/489
(100 %)
2 diff
(99.6 %id)
DA398261 thalamus .b 939 to 1495 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA322740 hippocampus .b 940 to 1492 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA241168 brain .b 942 to 1524 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
DA314927 hippocampus .b 943 to 1476 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA335549 hippocampus .b 943 to 1418 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
BU189767 leiomyosarcoma, uterus .b 946 to 1728 1 to 795       795/907
(87 %)
21 diff
(97.7 %id)
DA231520 brain .b 948 to 1484 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA102387 cerebellum .b 953 to 1543 2 to 592   capped   591/591
(100 %)
4 diff
(99.4 %id)
BF966522 brain, hippocampus .b 953 to 1662 2 to 701       700/886
(79 %)
6 diff
(99.4 %id)
DA096941 cerebellum .b 956 to 1525 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA108941 cerebellum .b 956 to 1522 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA507477 brain .b 956 to 1522 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA126286 cerebellum .b 957 to 1526 15 to 584   capped   570/583
(97 %)
6 diff
(99.0 %id)
DA097524 cerebellum .b 958 to 1524 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA101562 cerebellum .b 958 to 1550 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA109958 cerebellum .b 958 to 1492 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DA115089 cerebellum .b 958 to 1518 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA116787 cerebellum .b 958 to 1556 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA117783 cerebellum .b 958 to 1525 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA128221 cerebellum .b 958 to 1526 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA188667 amygdala .b 958 to 1443 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
DA222710 brain .b 958 to 1495 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA239508 brain .b 958 to 1550 2 to 594   capped   593/594
(99 %)
1 diff
(99.9 %id)
DA243921 brain .b 958 to 1552 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA244939 brain .b 958 to 1528 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA311945 hippocampus .b 958 to 1443 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
DA318362 hippocampus .b 958 to 1499 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA335427 hippocampus .b 958 to 1538 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA339519 hippocampus .b 958 to 1544 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA388350 thalamus .b 958 to 1538 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA499215 brain .b 958 to 1540 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA499222 brain .b 958 to 1544 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA760410   .b 958 to 1500 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA777519 brain .b 958 to 1515 2 to 559   capped   558/559
(99 %)
1 diff
(99.9 %id)
DA786541 brain .b 958 to 1555 2 to 600   capped   599/599
(100 %)
2 diff
(99.7 %id)
DA802507 brain .b 958 to 1499 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA807910 brain .b 958 to 1549 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA099138 cerebellum .b 959 to 1508 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA103706 cerebellum .b 959 to 1523 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA313542 hippocampus .b 959 to 1496 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA409662 thalamus .b 959 to 1512 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AF220036   .b 960 to 5278 1638 to 5957 L653F I662Y N663Q D664R E665* tiling clone, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 4320/5957
(72 %)
9 diff
(99.9 %id)
AF220037   .b 960 to 5278 1638 to 5956 exact tiling clone, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 4319/5956
(72 %)
7 diff
(99.9 %id)
AF220038   .b 960 to 5278 1638 to 5957 N657K T659D F660I I662Y N663Q ... AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 4320/5957
(72 %)
8 diff
(99.9 %id)
DA096657 cerebellum .b 960 to 1506 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA111421 cerebellum .b 960 to 1518 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA193474 amygdala .b 960 to 1556 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA211895 brain .b 960 to 1529 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA213377 brain .b 960 to 1492 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA214883 brain .b 960 to 1509 2 to 551   capped   550/552
(99 %)
1 diff
(99.9 %id)
DA221729 brain .b 960 to 1515 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA231825 brain .b 960 to 1523 2 to 565   capped   564/564
(100 %)
4 diff
(99.3 %id)
DA241710 brain .b 960 to 1547 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA247861 brain .b 960 to 1524 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA312507 hippocampus .b 960 to 1511 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA318835 hippocampus .b 960 to 1518 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA320886 hippocampus .b 960 to 1597 2 to 639   capped   638/638
(100 %)
2 diff
(99.7 %id)
DA327846 hippocampus .b 960 to 1418 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
DA328349 hippocampus .b 960 to 1428 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA336919 hippocampus .b 960 to 1529 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA405922 thalamus .b 960 to 1608 2 to 650   capped   649/649
(100 %)
0 diff
(100 %id)
DA414396 thalamus .b 960 to 1530 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA416008 thalamus .b 960 to 1517 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA502807 brain .b 960 to 1492 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA741342   .b 960 to 1428 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA800738 brain .b 960 to 1435 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
DA804704 brain .b 960 to 1529 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA332045 hippocampus .b 961 to 1555 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA391574 thalamus .b 961 to 1544 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA108187 cerebellum .b 962 to 1537 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA189732 amygdala .b 962 to 1492 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA316105 hippocampus .b 963 to 1507 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA093767 cerebellum .b 966 to 1443 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
DA105889 cerebellum .b 966 to 1508 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA220289 brain .b 966 to 1516 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA324235 hippocampus .b 966 to 1515 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA325312 hippocampus .b 966 to 1274 2 to 310   capped   309/309
(100 %)
0 diff
(100 %id)
DB240623 trachea .b 966 to 1563 2 to 599   capped   598/598
(100 %)
2 diff
(99.7 %id)
BX461897 brain, fetal brain .b 970 to 1847 1 to 884       884/884
(100 %)
10 diff
(98.9 %id)
DA245277 brain .b 971 to 1555 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA105591 cerebellum .b 972 to 1556 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA241338 brain .b 972 to 1538 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA123061 cerebellum .b 973 to 1492 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DA114207 cerebellum .b 978 to 1538 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DR001048 fetal brain .b 980 to 1638 8 to 666       659/666
(98 %)
1 diff
(99.9 %id)
DA239002 brain .b 981 to 1581 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
D87458 brain .b 982 to 5278 1 to 4298 L653F I662Y N663Q D664R E665* available from KIAA,   4298/4298
(100 %)
3 diff
(100.0 %id)
BF315921 brain, neuroblastoma .b 985 to 1727 1 to 741       741/839
(88 %)
27 diff
(96.8 %id)
BF314134 brain, neuroblastoma .b 986 to 1658 2 to 652       651/735
(88 %)
27 diff
(96.4 %id)
BE314494 brain, neuroblastoma .b 988 to 1648 35 to 695       661/763
(86 %)
10 diff
(98.7 %id)
DA095128 cerebellum .b 990 to 1544 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA096379 cerebellum .b 990 to 1558 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA100102 cerebellum .b 990 to 1536 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA101129 cerebellum .b 990 to 1580 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA104426 cerebellum .b 990 to 1541 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA117352 cerebellum .b 990 to 1537 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA120074 cerebellum .b 990 to 1515 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA125250 cerebellum .b 990 to 1522 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA185699 amygdala .b 990 to 1308 2 to 321   capped   320/320
(100 %)
1 diff
(99.7 %id)
DA189291 amygdala .b 990 to 1575 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA189506 amygdala .b 990 to 1556 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA231733 brain .b 990 to 1545 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA247618 brain .b 990 to 1579 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA247934 brain .b 990 to 1568 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA249940 brain .b 990 to 1571 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA314452 hippocampus .b 990 to 1575 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA316321 hippocampus .b 990 to 1535 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA316633 hippocampus .b 990 to 1536 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA319453 hippocampus .b 990 to 1555 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA321371 hippocampus .b 990 to 1533 2 to 545   capped   544/545
(99 %)
2 diff
(99.7 %id)
DA322174 hippocampus .b 990 to 1633 2 to 644   capped   643/643
(100 %)
2 diff
(99.7 %id)
DA323520 hippocampus .b 990 to 1558 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA324046 hippocampus .b 990 to 1492 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
DA326372 hippocampus .b 990 to 1539 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA326895 hippocampus .b 990 to 1578 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA327464 hippocampus .b 990 to 1543 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA327775 hippocampus .b 990 to 1543 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA328918 hippocampus .b 990 to 1534 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA330860 hippocampus .b 990 to 1528 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA332440 hippocampus .b 990 to 1581 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA340148 hippocampus .b 990 to 1588 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DA398427 thalamus .b 990 to 1552 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA405684 thalamus .b 990 to 1561 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA407467 thalamus .b 990 to 1544 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA414916 thalamus .b 990 to 1529 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA418119 thalamus .b 990 to 1529 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA679928   .b 990 to 1529 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA742353   .b 990 to 1503 2 to 517   capped   516/516
(100 %)
2 diff
(99.7 %id)
DA744809   .b 990 to 1474 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
DA799017 brain .b 990 to 1400 2 to 412   capped   411/411
(100 %)
0 diff
(100 %id)
DA805060 brain .b 990 to 1492 2 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
DA811571 brain .b 990 to 1557 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB169133 kidney, tumor tissue .b 990 to 1559 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA319712 hippocampus .b 992 to 1567 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BX347247 Neuroblastoma Cot 50-normalized .b 992 to 1855 1 to 861       861/863
(99 %)
32 diff
(96.3 %id)
DA192886 amygdala .b 996 to 1616 2 to 622   capped   621/621
(100 %)
0 diff
(100 %id)
BX347246 Neuroblastoma Cot 50-normalized .b 997 to 1591 4 to 602       599/784
(76 %)
24 diff
(97.0 %id)
DA100418 cerebellum .b 1000 to 1544 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BF348190 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1004 to 1760 1 to 769       769/1030
(74 %)
59 diff
(94.3 %id)
DA767845 brain .b 1008 to 1767 2 to 760   capped   759/763
(99 %)
7 diff
(99.1 %id)
BE262078 brain, neuroblastoma .b 1010 to 1543 1 to 550       550/550
(100 %)
26 diff
(95.3 %id)
DA102820 cerebellum .b 1017 to 1563 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA312779 hippocampus .b 1041 to 1608 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA235592 brain .b 1044 to 1626 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
TI_1948138152   .b 1117 to 1903 121 to 918       798/1272
(62 %)
40 diff
(96.9 %id)
TI_1948138445   .b 1117 to 1767 121 to 772       652/1277
(51 %)
13 diff
(99.0 %id)
TI_1948138743   .b 1117 to 1607 116 to 608       493/1346
(36 %)
36 diff
(97.4 %id)
TI_1948139054   .b 1117 to 1734 124 to 740       617/1264
(48 %)
23 diff
(98.2 %id)
TI_1948231373   .b 1117 to 1604 117 to 604       488/636
(76 %)
9 diff
(98.6 %id)
CV027715 mixed .b 1123 to 1736 1 to 614       614/617
(99 %)
1 diff
(99.9 %id)
EL737048 mixed .b 1123 to 1595 1 to 473       473/473
(100 %)
0 diff
(100 %id)
TI_57240547   .b 1123 to 1818 31 to 750   AAA   720/759
(94 %)
6 diff
(99.3 %id)
BI913508 brain .b 1125 to 1818 1 to 718       718/736
(97 %)
34 diff
(95.4 %id)
DA118222 cerebellum .b 1171 to 1719 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DA120871 cerebellum .b 1199 to 1732 2 to 535   capped   534/549
(97 %)
1 diff
(99.9 %id)
DA808959 brain .b 1208 to 1779 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA799239 brain .b 1209 to 1741 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA223627 brain .b 1302 to 1757 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA811560 brain .b 1404 to 1970 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BF312943 brain, neuroblastoma .b 1450 to 1671 503 to 725       562/726
(77 %)
45 diff
(93.9 %id)
DA112537 cerebellum .b 1565 to 2121 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA804710 brain .b 1585 to 2157 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA804758 brain .b 1585 to 2152 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BX408276 brain, fetal brain .b 1619 to 2428 1 to 803       803/803
(100 %)
14 diff
(98.3 %id)
DA414284 thalamus .b 1628 to 2192 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BX408839 brain, fetal brain .b 1663 to 2446 1 to 787       787/787
(100 %)
38 diff
(95.2 %id)
AW249143 lung, small cell carcinoma .b 1773 to 2291 9 to 527       519/527
(98 %)
1 diff
(99.9 %id)
DA183799 amygdala .b 1811 to 2293 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DA777500 brain .b 1942 to 2513 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BX478888   .b 1943 to 2394 9 to 460       454/460
(98 %)
7 diff
(98.5 %id)
BF885867 testis_normal .b 2071 to 2536 52 to 520       469/520
(90 %)
13 diff
(97.5 %id)
DA093855 cerebellum .b 2240 to 2711 86 to 557   capped   472/556
(84 %)
6 diff
(99.0 %id)
CA396220 eye, RPE/choroid .b 2514 to 3100 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BM043784 carcinoma, cell line, Prostate .b 2755 to 3359 1 to 620       620/620
(100 %)
37 diff
(94.1 %id)
CD513897 brain, Pituitary .b 2857 to 3744 1 to 901       901/904
(99 %)
20 diff
(97.8 %id)
AW950918   .b 2898 to 3523 639 to 11     Submitted on the opposite strand 629/639
(98 %)
11 diff
(98.3 %id)
DA513901 brain .b 2901 to 3462 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA173440 amygdala .b 2915 to 3493 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BP309633 brain .b 3107 to 3684 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
DA348433 substantia nigra .b 3138 to 3593 2 to 457   capped   456/456
(100 %)
1 diff
(99.8 %id)
BJ992391 hepatoblastoma .b 3139 to 3555 1 to 417       417/417
(100 %)
1 diff
(99.8 %id)
AA350513 brain .b 3176 to 3522 347 to 1     Submitted on the opposite strand 347/350
(99 %)
2 diff
(99.5 %id)
BE767190 nervous_tumor .b 3195 to 3564 1 to 370       370/370
(100 %)
6 diff
(98.4 %id)
T05265   .b 3236 to 3613 1 to 377       377/381
(98 %)
3 diff
(99.3 %id)
DA067893 cerebellum .b 3541 to 4120 2 to 581   capped   580/580
(100 %)
4 diff
(99.4 %id)
BP209406 cerebellum .b 3548 to 4128 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DB168670 kidney, tumor tissue .b 3554 to 4144 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
BX450891 brain, fetal brain .b 3573 to 4463 888 to 5       884/892
(99 %)
0 diff
(100 %id)
DA365060 subthalamic nucleus .b 3576 to 4129 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA134489 alzheimer cortex .b 3580 to 4129 2 to 551   capped   550/550
(100 %)
6 diff
(99.0 %id)
BF531033 anaplastic oligodendroglioma with 1p/19qloss, brain .b 3581 to 4425 1 to 845       845/917
(92 %)
31 diff
(96.7 %id)
BI816911 anaplastic oligodendroglioma with 1p/19qloss, brain .b 3581 to 4325 1 to 751       751/751
(100 %)
8 diff
(99.0 %id)
DA073169 cerebellum .b 3593 to 4147 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
CR594583 Neuroblastoma Cot 25-normalized .b 3598 to 5234 1 to 1637       1637/1637
(100 %)
0 diff
(100 %id)
BJ992392 hepatoblastoma .b 4901 to 5241 341 to 1       341/341
(100 %)
0 diff
(100 %id)
AW248716 lung, small cell carcinoma .b 4924 to 5285 363 to 3       361/363
(99 %)
0 diff
(100 %id)
NM_052978.4   .c 1 to 4350 1 to 4350 exact RefSeq, AAA   4350/4350
(100 %)
0 diff
(100 %id)
BC013414 Brain, neuroblastoma .c 629 to 4350 1 to 3721 exact tiling clone, available from MGC, AAA   3721/3721
(100 %)
1 diff
(100.0 %id)
TI_1948138155   .c 1580 to 2417 970 to 132       839/1335
(62 %)
26 diff
(98.1 %id)
TI_1948138448   .c 1681 to 2417 872 to 134       739/1391
(53 %)
20 diff
(98.6 %id)
TI_1948139057   .c 1691 to 2417 861 to 130       732/1410
(51 %)
14 diff
(99.1 %id)
BX115829 multiple sclerosis lesions .c 1818 to 2483 1 to 666       666/666
(100 %)
0 diff
(100 %id)
TI_1948138744   .c 1828 to 2417 733 to 141       593/1379
(43 %)
18 diff
(98.7 %id)
TI_1948139056   .c 1918 to 2417 647 to 143       505/1418
(35 %)
21 diff
(98.6 %id)
DA075247 cerebellum .c 1921 to 2501 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA166705 amygdala .c 2020 to 2588 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
H00149 whole brain .c 2207 to 2621 1 to 421       421/421
(100 %)
15 diff
(96.5 %id)
DB180986 kidney, tumor tissue .c 2289 to 2799 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA275591 corpus callosum .c 2325 to 2869 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA177312 amygdala .c 2357 to 2913 2 to 558   capped   557/558
(99 %)
2 diff
(99.7 %id)
DB307174 corpus callosum .c 3812 to 4352 541 to 1       541/541
(100 %)
0 diff
(100 %id)
H05077 whole brain .c 3922 to 4352 444 to 13   AAA   432/434
(99 %)
8 diff
(98.2 %id)
DA149376 amygdala .d-u 1 to 575 2 to 577   tiling clone, capped   576/576
(100 %)
3 diff
(99.5 %id)
DA411714 thalamus .d-u 123 to 675 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
AK054781 cerebellum .d-u 381 to 2643 1 to 2263   tiling clone, available from FLJ,   2263/2263
(100 %)
2 diff
(100.0 %id)
DA055644 cerebellum .d-u 382 to 931 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
BX953012   .d-u 479 to 928 1 to 450   tiling clone,   450/450
(100 %)
0 diff
(100 %id)
DA223442 brain .d-u 1668 to 2347 2 to 681   capped   680/680
(100 %)
0 diff
(100 %id)
DB296551 cerebellum .d-u 2080 to 2643 564 to 1       564/564
(100 %)
1 diff
(99.9 %id)
DA242277 brain .e-u 1 to 589 2 to 590   tiling clone, capped   589/590
(99 %)
2 diff
(99.7 %id)
DA391529 thalamus .e-u 546 to 1133 2 to 590   tiling clone, capped   589/589
(100 %)
1 diff
(99.9 %id)
DA521233 brain .e-u 642 to 1215 2 to 576   tiling clone, capped   575/575
(100 %)
3 diff
(99.5 %id)
BF921123 nervous_tumor .e-u 1038 to 1383 27 to 372   tiling clone,   346/386
(89 %)
4 diff
(99.0 %id)
DA088199 cerebellum .e-u 1179 to 1731 2 to 556 L96F V97G T98D Y99L W100L ... capped   555/560
(99 %)
3 diff
(99.5 %id)
BF528171 anaplastic oligodendroglioma with 1p/19qloss, brain .e-u 1267 to 2003 14 to 749 exact tiling clone,   736/1078
(68 %)
30 diff
(97.3 %id)
BE767216 nervous_tumor .e-u 1359 to 1749 1 to 392 W7G F91L L96W     392/392
(100 %)
5 diff
(98.8 %id)
BF340451 brain, glioblastoma with EGFR amplification .e-u 1386 to 2045 1 to 667 A26C V27R F28S T29L P30H ...     667/1152
(57 %)
21 diff
(98.2 %id)
BI816807 brain, glioblastoma with EGFR amplification .e-u 1386 to 2023 1 to 643 exact     643/643
(100 %)
8 diff
(98.8 %id)
Z42002 brain, total brain .e-u 1533 to 1833 1 to 301       301/301
(100 %)
1 diff
(99.7 %id)
BQ954947 sciatic nerve .e-u 1575 to 2403 12 to 843   tiling clone,   832/966
(86 %)
6 diff
(99.4 %id)
BX353369 Neuroblastoma Cot 25-normalized .e-u 1675 to 2555 1 to 887       887/887
(100 %)
15 diff
(98.4 %id)
DA114852 cerebellum .e-u 1710 to 2240 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
H11777 whole brain .e-u 1710 to 2111 1 to 412       412/419
(98 %)
17 diff
(96.0 %id)
BX368273 Neuroblastoma Cot 50-normalized .e-u 1750 to 2543 790 to 1       790/794
(99 %)
34 diff
(95.8 %id)
BX488889   .e-u 1757 to 2192 1 to 437       437/437
(100 %)
1 diff
(99.8 %id)
R24329 whole brain .e-u 1774 to 2247 1 to 482       482/482
(100 %)
20 diff
(95.9 %id)
R24342 whole brain .e-u 1774 to 2159 1 to 391       391/428
(91 %)
13 diff
(97.0 %id)
DB501897 hypothalamus .e-u 1786 to 2263 1 to 478       478/478
(100 %)
0 diff
(100 %id)
CB107350 Liver .e-u 1788 to 2199 1 to 412       412/412
(100 %)
2 diff
(99.6 %id)
BX450892 brain, fetal brain .e-u 1903 to 2538 648 to 1       648/693
(93 %)
0 diff
(100 %id)
BX368021 Neuroblastoma Cot 50-normalized .e-u 1906 to 2631 730 to 1       730/878
(83 %)
29 diff
(96.7 %id)
Z45111 brain, total brain .e-u 1911 to 2220 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
R17120 whole brain .e-u 1912 to 2248 1 to 344       344/348
(98 %)
12 diff
(96.6 %id)
AI870415 anaplastic oligodendroglioma, brain .e-u 1923 to 2498 577 to 1       577/577
(100 %)
2 diff
(99.7 %id)
R20097 whole brain .e-u 1955 to 2288 1 to 338       338/341
(99 %)
10 diff
(97.1 %id)
AV724360 hypothalamus .e-u 1986 to 2418 28 to 451       424/452
(93 %)
6 diff
(98.7 %id)
AI360233 anaplastic oligodendroglioma, brain .e-u 2038 to 2498 461 to 1       461/461
(100 %)
0 diff
(100 %id)
EL954830 eyeball .e-u 2076 to 2548 1 to 473       473/473
(100 %)
6 diff
(98.8 %id)
AA682963 schizophrenic brain S-11 frontal lobe .e-u 2077 to 2467 391 to 1       391/391
(100 %)
4 diff
(99.0 %id)
AI038686   .e-u 2082 to 2502 419 to 1       419/419
(100 %)
3 diff
(99.3 %id)
AA779580   .e-u 2088 to 2501 411 to 1       411/411
(100 %)
3 diff
(99.3 %id)
Z43109 brain, total brain .e-u 2105 to 2432 1 to 328       328/328
(100 %)
2 diff
(99.4 %id)
BF338970 brain, glioblastoma with EGFR amplification .e-u 2115 to 2902 1 to 785       785/850
(92 %)
21 diff
(97.6 %id)
BX395419 Neuroblastoma Cot 50-normalized .e-u 2183 to 3331 1146 to 1       1146/1147
(99 %)
28 diff
(97.6 %id)
BG030716 breast, mammary adenocarcinoma, cell line .e-u 2189 to 2961 1 to 780   tiling clone,   780/1063
(73 %)
28 diff
(97.4 %id)
CK023803 brain/CNS, Human Brain - Cerebellar Cortex .e-u 2199 to 2879 1 to 674       674/739
(91 %)
10 diff
(98.7 %id)
N54121 multiple sclerosis lesions .e-u 2297 to 2476 1 to 180       180/180
(100 %)
1 diff
(99.5 %id)
TI_151733824   .e-u 2309 to 2917 663 to 58       606/1044
(58 %)
0 diff
(100 %id)
BQ187149 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2312 to 2588 1 to 278   fully sequenced, Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 278/278
(100 %)
1 diff
(99.7 %id)
AA774883 schizophrenic brain S-11 frontal lobe .e-u 2350 to 2789 1 to 438     Submitted on the opposite strand 438/438
(100 %)
57 diff
(87.0 %id)
CR626106 fetal brain .e-u 2385 to 3362 1 to 978   tiling clone,   978/978
(100 %)
0 diff
(100 %id)
BX442072 brain, fetal brain .e-u 2385 to 3362 1 to 972       972/973
(99 %)
13 diff
(98.7 %id)
BX388521 Neuroblastoma Cot 25-normalized .e-u 2386 to 3296 1 to 908       908/921
(98 %)
24 diff
(97.4 %id)
CK002956 brain/CNS, Human Brain - Cerebellar Cortex .e-u 2397 to 2892 1 to 496   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 496/496
(100 %)
3 diff
(99.4 %id)
T06869   .e-u 2398 to 2779 384 to 1       384/384
(100 %)
5 diff
(98.7 %id)
BM808645 brain, hippocampus .e-u 2402 to 3285 1 to 895       895/1034
(86 %)
6 diff
(99.5 %id)
BX353368 Neuroblastoma Cot 25-normalized .e-u 2404 to 3335 932 to 1       932/932
(100 %)
40 diff
(95.8 %id)
CN255810 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e-u 2409 to 2800 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
BM808523 brain, hippocampus .e-u 2413 to 3362 11 to 965       955/1035
(92 %)
13 diff
(98.8 %id)
BX461896 brain, fetal brain .e-u 2417 to 3334 922 to 5       918/922
(99 %)
0 diff
(100 %id)
N92215 multiple sclerosis lesions .e-u 2475 to 2934 1 to 460   fully sequenced,   460/460
(100 %)
11 diff
(97.7 %id)
CK300363 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2558 to 2895 356 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 338/338
(100 %)
1 diff
(99.8 %id)
N50380 multiple sclerosis lesions .e-u 2561 to 2741 1 to 181       181/181
(100 %)
1 diff
(99.5 %id)
AV745645 Pituitary .e-u 2571 to 3152 1 to 574       574/574
(100 %)
11 diff
(98.1 %id)
AW891496 nervous_tumor .e-u 2674 to 2937 1 to 265       265/265
(100 %)
2 diff
(99.3 %id)
BE764815 nervous_tumor .e-u 2678 to 2914 1 to 253       253/254
(99 %)
25 diff
(90.2 %id)
AW891508 nervous_tumor .e-u 2688 to 2838 1 to 151       151/151
(100 %)
2 diff
(98.7 %id)
BE764835 nervous_tumor .e-u 2688 to 2845 1 to 160       160/160
(100 %)
5 diff
(96.9 %id)
BE764862 nervous_tumor .e-u 2698 to 3161 1 to 464       464/467
(99 %)
10 diff
(97.9 %id)
BQ189716 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2707 to 2897 1 to 191   fully sequenced, Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 191/191
(100 %)
0 diff
(100 %id)
TI_151734548   .e-u 2707 to 3358 745 to 94   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 652/954
(68 %)
0 diff
(100 %id)
AI307742 2 pooled tumors (clear cell type), Kidney .e-u 2712 to 3362 652 to 2       651/652
(99 %)
0 diff
(100 %id)
AW005439 anaplastic oligodendroglioma, brain .e-u 2758 to 3355 598 to 1       598/598
(100 %)
0 diff
(100 %id)
BF342319 brain, glioblastoma with EGFR amplification .e-u 2768 to 3355 1 to 586   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 586/586
(100 %)
2 diff
(99.7 %id)
N46566 multiple sclerosis lesions .e-u 2783 to 2960 1 to 177       177/177
(100 %)
1 diff
(99.5 %id)
BQ188964 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2783 to 3362 1 to 582   fully sequenced, Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 582/582
(100 %)
5 diff
(99.2 %id)
AI813363 2 pooled tumors (clear cell type), Kidney .e-u 2808 to 3357 552 to 3       550/552
(99 %)
0 diff
(100 %id)
BF059340 pooled germ cell tumors .e-u 2820 to 3358 539 to 1       539/539
(100 %)
0 diff
(100 %id)
BQ184373 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2828 to 3355 544 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 528/528
(100 %)
0 diff
(100 %id)
H40757 brain .e-u 2836 to 3036 1 to 201       201/201
(100 %)
0 diff
(100 %id)
DB305970 brain .e-u 2844 to 3358 515 to 1       515/515
(100 %)
0 diff
(100 %id)
CR744093   .e-u 2855 to 3355 513 to 15   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 499/499
(100 %)
2 diff
(99.6 %id)
BP390080 pancreatic islet .e-u 2861 to 3360 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
DB317224 brain .e-u 2866 to 3355 491 to 1       491/496
(98 %)
1 diff
(99.8 %id)
CK300843 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 2867 to 3358 510 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 492/492
(100 %)
0 diff
(100 %id)
DB573092 hypothalamus .e-u 2868 to 3351 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
BF433788 carcinoid, lung .e-u 2871 to 3360 495 to 6       490/495
(98 %)
0 diff
(100 %id)
N78451 multiple sclerosis lesions .e-u 2872 to 3088 1 to 218   fully sequenced,   218/218
(100 %)
3 diff
(98.7 %id)
BE503599 carcinoid, lung .e-u 2890 to 3357 470 to 3       468/472
(99 %)
0 diff
(100 %id)
N51856 multiple sclerosis lesions .e-u 2897 to 3355 463 to 1       463/464
(99 %)
9 diff
(98.1 %id)
DB553034 hippocampus .e-u 2898 to 3353 1 to 456     Submitted on the opposite strand 456/456
(100 %)
1 diff
(99.8 %id)
AI334658 2 pooled tumors (clear cell type), Kidney .e-u 2914 to 3362 450 to 2       449/450
(99 %)
0 diff
(100 %id)
DB537706 hippocampus .e-u 2919 to 3355 1 to 439     Submitted on the opposite strand 439/439
(100 %)
15 diff
(96.6 %id)
N64481 multiple sclerosis lesions .e-u 2931 to 3358 429 to 1   fully sequenced,   429/429
(100 %)
4 diff
(99.1 %id)
N39155.
matches multiple genes
multiple sclerosis lesions .e-u 2936 to 3353 419 to 1     also hits gene narstawby 419/419
(100 %)
3 diff
(99.3 %id)
AI823962 2 pooled tumors (clear cell type), Kidney .e-u 2940 to 3358 435 to 17   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 419/419
(100 %)
0 diff
(100 %id)
AI968813 pooled germ cell tumors .e-u 2942 to 3308 367 to 1       367/367
(100 %)
6 diff
(98.4 %id)
AI051264 brain, glioblastoma (pooled) .e-u 2948 to 3359 412 to 1       412/412
(100 %)
0 diff
(100 %id)
AI423969 brain, glioblastoma (pooled) .e-u 2948 to 3351 404 to 1       404/404
(100 %)
3 diff
(99.3 %id)
AI056912 brain, glioblastoma (pooled) .e-u 2962 to 3357 397 to 2       396/397
(99 %)
0 diff
(100 %id)
BF108416 carcinoid, lung .e-u 2966 to 3362 402 to 6       397/402
(98 %)
0 diff
(100 %id)
AI654939 pooled germ cell tumors .e-u 2968 to 3358 391 to 1       391/391
(100 %)
0 diff
(100 %id)
AI769872 2 pooled tumors (clear cell type), Kidney .e-u 3003 to 3357 356 to 3       354/356
(99 %)
0 diff
(100 %id)
AI263775 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 3015 to 3362 350 to 3       348/350
(99 %)
0 diff
(100 %id)
AI469013 follicular lymphoma, lymph node .e-u 3016 to 3362 348 to 2       347/348
(99 %)
0 diff
(100 %id)
BM718189 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 3031 to 3355 1 to 325   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 325/325
(100 %)
0 diff
(100 %id)
N51628 multiple sclerosis lesions .e-u 3035 to 3355 323 to 1       323/327
(98 %)
3 diff
(99.1 %id)
R43213 whole brain .e-u 3039 to 3362 335 to 2       334/383
(87 %)
0 diff
(100 %id)
T15610   .e-u 3040 to 3355 323 to 1       323/376
(85 %)
9 diff
(97.7 %id)
R44923 whole brain .e-u 3047 to 3361 324 to 1       324/324
(100 %)
14 diff
(95.7 %id)
Z40846 brain, total brain .e-u 3052 to 3355 304 to 1       304/304
(100 %)
0 diff
(100 %id)
N62727 multiple sclerosis lesions .e-u 3058 to 3355 306 to 1   fully sequenced,   306/306
(100 %)
2 diff
(99.4 %id)
R44936 whole brain .e-u 3068 to 3362 305 to 2       304/305
(99 %)
0 diff
(100 %id)
AI468701 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 3074 to 3362 291 to 3       289/291
(99 %)
0 diff
(100 %id)
F01522 brain, total brain .e-u 3102 to 3355 254 to 1       254/254
(100 %)
0 diff
(100 %id)
F02585 brain, total brain .e-u 3107 to 3358 251 to 1       251/251
(100 %)
1 diff
(99.7 %id)
AI424644 brain, glioblastoma (pooled) .e-u 3130 to 3355 226 to 1       226/226
(100 %)
0 diff
(100 %id)
BU590310 mixed (pool of 40 RNAs) .e-u 3144 to 3355 1 to 212   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 212/212
(100 %)
2 diff
(99.1 %id)
DB531341 hippocampus .e-u 3165 to 3355 115 to 305     Submitted on the opposite strand 191/305
(62 %)
6 diff
(98.1 %id)
FN145747 breast carcinoma .e-u 3169 to 3259 10 to 100       91/100
(91 %)
6 diff
(94.0 %id)
AI094862 brain, glioblastoma (pooled) .e-u 3181 to 3356 176 to 1       176/176
(100 %)
2 diff
(98.9 %id)
DA245745 brain .f 1 to 594 2 to 595   tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
DA400658 thalamus .f 106 to 653 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA402229 thalamus .f 113 to 659 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA337926 hippocampus .f 176 to 744 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
AL708176 human skeletal muscle .f 189 to 828 1 to 640 exact     640/640
(100 %)
0 diff
(100 %id)
DA402322 thalamus .f 533 to 1083 2 to 552 exact tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DA208053 brain .f 998 to 1569 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB304274 brain .f 2257 to 2796 540 to 1   tiling clone,   540/540
(100 %)
1 diff
(99.9 %id)
DA096072 cerebellum .g-u 1 to 562 2 to 565   tiling clone, capped   564/564
(100 %)
2 diff
(99.7 %id)
DA335013 hippocampus .g-u 307 to 892 2 to 584   capped   583/586
(99 %)
8 diff
(98.7 %id)
DA119182 cerebellum .g-u 416 to 959 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
AI393469 pooled .g-u 471 to 886 416 to 1   tiling clone,   416/416
(100 %)
1 diff
(99.8 %id)
AA278974 germinal center B cell .g-u 544 to 886 345 to 1       345/345
(100 %)
4 diff
(98.9 %id)
DA212401 brain .g-u 633 to 1169 2 to 539   tiling clone, capped   538/538
(100 %)
2 diff
(99.7 %id)
DA324637 hippocampus .g-u 634 to 1183 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DA249222 brain .g-u 877 to 1479 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
DA105308 cerebellum .g-u 934 to 1512 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA338209 hippocampus .g-u 948 to 1537 2 to 591   tiling clone, capped   590/590
(100 %)
0 diff
(100 %id)
DA210929 brain .g-u 1018 to 1486 2 to 473   capped   472/473
(99 %)
6 diff
(98.8 %id)
DA324202 hippocampus .g-u 1040 to 1606 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA100643 cerebellum .g-u 1133 to 1727 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA321659 hippocampus .g-u 1298 to 1853 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DB304385 brain .g-u 2662 to 3182 521 to 1 exact tiling clone,   521/521
(100 %)
0 diff
(100 %id)
DA410307 thalamus .h-u 1 to 563 2 to 564   tiling clone, to resequence, capped   563/563
(100 %)
0 diff
(100 %id)
DA078509 cerebellum .h-u 1275 to 1833 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
H11709 whole brain .h-u 1331 to 1826 1 to 506       506/507
(99 %)
21 diff
(95.9 %id)
R21067 whole brain .h-u 1397 to 1826 1 to 440       440/443
(99 %)
14 diff
(96.9 %id)
AV702229 adrenal gland .h-u 1480 to 1881 1 to 402       402/402
(100 %)
0 diff
(100 %id)
F13239 brain, total brain .h-u 1504 to 1783 1 to 280       280/280
(100 %)
0 diff
(100 %id)
T77638 whole brain .h-u 1530 to 1976 1 to 448   tiling clone,   448/448
(100 %)
6 diff
(98.7 %id)
CK004386 brain/CNS, Human Brain - Frontal Cortex .h-u 1549 to 2178 1 to 626       626/627
(99 %)
23 diff
(96.4 %id)
CK024084 brain/CNS, Human Brain - Frontal Cortex .h-u 1683 to 2353 1 to 667   tiling clone,   667/731
(91 %)
16 diff
(97.9 %id)
R25273 whole brain .h-u 1793 to 2234 1 to 454       454/456
(99 %)
20 diff
(95.7 %id)
H24166 whole brain .h-u 1793 to 2327 1 to 548   tiling clone,   548/549
(99 %)
33 diff
(94.0 %id)
BU579659 insulinoma, Pancreas .h-u 2476 to 3079 617 to 15   tiling clone, AAA   603/603
(100 %)
1 diff
(99.9 %id)
BF057241 pooled germ cell tumors .h-u 2538 to 3077 540 to 1       540/540
(100 %)
0 diff
(100 %id)
CR743879   .h-u 2546 to 3076 544 to 15   AAA   530/530
(100 %)
3 diff
(99.5 %id)
DB312559 thalamus .h-u 2555 to 3079 525 to 1   to resequence,   525/531
(98 %)
2 diff
(99.7 %id)
AI333004 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 2559 to 3080 522 to 1   tiling clone,   522/522
(100 %)
0 diff
(100 %id)
AW071844 anaplastic oligodendroglioma, brain .h-u 2584 to 3079 496 to 1       496/496
(100 %)
1 diff
(99.8 %id)
AI817927 anaplastic oligodendroglioma, brain .h-u 2616 to 3079 500 to 13   AAA   488/488
(100 %)
37 diff
(92.5 %id)
AW590483 pooled germ cell tumors .h-u 2616 to 3077 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AI362050 brain, glioblastoma (pooled) .h-u 2646 to 3081 442 to 7       436/442
(98 %)
0 diff
(100 %id)
H24058 whole brain .h-u 2653 to 3080 450 to 12   AAA   439/443
(99 %)
21 diff
(95.3 %id)
DB532492 hippocampus .h-u 2658 to 3077 1 to 419     Submitted on the opposite strand 419/419
(100 %)
4 diff
(99.1 %id)
H11621 whole brain .h-u 2669 to 3079 435 to 17   AAA   419/419
(100 %)
15 diff
(96.5 %id)
BE046035 pooled germ cell tumors .h-u 2683 to 3077 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
R46626 whole brain .h-u 2713 to 3079 386 to 11   AAA   376/378
(99 %)
15 diff
(96.1 %id)
AI656763 pooled germ cell tumors .h-u 2715 to 3078 364 to 1       364/364
(100 %)
0 diff
(100 %id)
N51303 multiple sclerosis lesions .h-u 2718 to 3080 377 to 1       377/390
(96 %)
23 diff
(94.2 %id)
AI363814 brain, glioblastoma (pooled) .h-u 2750 to 3079 332 to 1       332/332
(100 %)
2 diff
(99.4 %id)
F10840 brain, total brain .h-u 2802 to 3077 276 to 1       276/276
(100 %)
0 diff
(100 %id)
AW139488   .h-u 2870 to 3079 225 to 16   AAA   210/211
(99 %)
2 diff
(99.1 %id)
DA098626 cerebellum .i 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DA328032 hippocampus .i 203 to 724 2 to 523   capped   522/522
(100 %)
1 diff
(99.9 %id)
DA192171 amygdala .i 475 to 1080 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
DA110793 cerebellum .i 530 to 1042 2 to 514   tiling clone, capped   513/513
(100 %)
0 diff
(100 %id)
FN164507 breast carcinoma .i 577 to 671 1 to 97       97/97
(100 %)
4 diff
(95.9 %id)
DA138925 alzheimer cortex .i 591 to 1131 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA150286 amygdala .i 618 to 1189 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA116093 cerebellum .i 700 to 1273 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA169350 amygdala .i 922 to 1474 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
AA679797   .j-u 1 to 344 371 to 28   tiling clone, AAA   344/344
(100 %)
0 diff
(100 %id)
DA103410 cerebellum .j-u 80 to 615 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA245064 brain .j-u 264 to 840 2 to 578 exact capped   577/577
(100 %)
3 diff
(99.5 %id)
DA321160 hippocampus .j-u 303 to 855 2 to 554 exact capped   553/553
(100 %)
2 diff
(99.7 %id)
DA333343 hippocampus .j-u 316 to 814 2 to 500 exact tiling clone, capped   499/499
(100 %)
1 diff
(99.8 %id)
DA092366 cerebellum .j-u 346 to 931 2 to 588 exact capped   587/587
(100 %)
1 diff
(99.9 %id)
DA104139 cerebellum .j-u 359 to 910 2 to 553 exact capped   552/552
(100 %)
0 diff
(100 %id)
AA323960 brain, cerebellum .j-u 367 to 731 1 to 372 A34G F35L H36S E38G     372/372
(100 %)
9 diff
(97.6 %id)
DA416980 thalamus .j-u 379 to 885 2 to 510 exact capped   509/509
(100 %)
3 diff
(99.5 %id)
DA393510 thalamus .j-u 400 to 991 2 to 594 exact capped   593/593
(100 %)
3 diff
(99.5 %id)
DA160193 amygdala .j-u 425 to 992 2 to 569 exact capped   568/568
(100 %)
2 diff
(99.7 %id)
DA103878 cerebellum .j-u 490 to 1043 2 to 555 exact capped   554/554
(100 %)
0 diff
(100 %id)
DA810261 brain .j-u 537 to 1091 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA802837 brain .j-u 538 to 1097 2 to 561 exact capped   560/560
(100 %)
0 diff
(100 %id)
DA093968 cerebellum .j-u 632 to 1125 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA194723 amygdala .j-u 654 to 1200 2 to 548   tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
DA098312 cerebellum .j-u 672 to 1222 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DB299265 cerebellum Gene TRIM9, variant not shown              
DA102809 cerebellum Gene TRIM9, variant not shown       capped      
DA229492 brain Gene TRIM9, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA334052 hippocampus Gene TRIM9, variant not shown       capped      
BX117444 pooled Gene TRIM9, variant not shown         Suspected internal deletion, this clone was ignored    
DB315656 brain Gene TRIM9, variant not shown         This clone was ignored    
DA496496 brain Gene TRIM9, variant not shown       capped This clone was ignored    
DB360873 mammary gland Gene TRIM9, variant not shown         This clone was ignored    
DA646222 mammary gland Gene TRIM9, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u, .f, .g-u, .h-u, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI