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Gene TRIM5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
219 supporting clones for gene TRIM5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57173773   .a 1 to 732 20 to 751   tiling clone,   732/754
(97 %)
10 diff
(98.7 %id)
BI826072 brain, medulla .a 9 to 732 1 to 724   tiling clone,   724/727
(99 %)
5 diff
(99.4 %id)
NM_033034.2   .a 638 to 4036 1 to 3399 exact RefSeq,   3399/3399
(100 %)
0 diff
(100 %id)
AK027593   .a 684 to 3673 1 to 2990 I76L L130P R136Q tiling clone, available from FLJ,   2990/2990
(100 %)
5 diff
(99.9 %id)
AF220025   .a 886 to 3664 8 to 2787 exact tiling clone, AAA   2780/2787
(99 %)
8 diff
(99.8 %id)
AF220026   .a 886 to 2119 8 to 1240       1233/1539
(80 %)
11 diff
(99.3 %id)
AB362928   .a 941 to 2422 1 to 1482 R136Q     1482/1482
(100 %)
2 diff
(99.9 %id)
AY625000   .a 941 to 2422 1 to 1482 exact     1482/1482
(100 %)
1 diff
(100.0 %id)
DQ288685 brain .a 941 to 2422 1 to 1482 R136Q     1482/1482
(100 %)
2 diff
(99.9 %id)
CD634657   .a 1360 to 1999 655 to 16       640/655
(97 %)
1 diff
(99.9 %id)
BM739708 Ascites, stomach .a 1493 to 2079 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BP419616 small intestine .a 1610 to 2084 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
AA626126   .a 1721 to 1874 154 to 1       154/154
(100 %)
5 diff
(96.8 %id)
DA472435   .a 1751 to 2306 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AW651739 cervical carcinoma cell line, cervix .a 1775 to 2258 1 to 484       484/484
(100 %)
0 diff
(100 %id)
EC445656 Prostate .a 1799 to 1890 90 to 1       90/90
(100 %)
2 diff
(97.8 %id)
AW673202 cervical carcinoma cell line, cervix .a 3160 to 3665 506 to 1       506/506
(100 %)
1 diff
(99.9 %id)
NM_033092.2   .b 1 to 3659 1 to 3659 exact RefSeq,   3659/3659
(100 %)
0 diff
(100 %id)
DA819043   .b 12 to 566 2 to 556   tiling clone, capped   555/555
(100 %)
3 diff
(99.5 %id)
DA742095   .b 14 to 544 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DB164844 thymus .b 27 to 608 2 to 584   tiling clone, capped   583/583
(100 %)
3 diff
(99.5 %id)
DB164913 thymus .b 28 to 611 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB101282 thymus .b 37 to 600 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA734358   .b 48 to 668 2 to 622   capped   621/621
(100 %)
8 diff
(98.8 %id)
DA405946 thalamus .b 55 to 697 2 to 644   capped   643/643
(100 %)
0 diff
(100 %id)
DA739400   .b 55 to 592 2 to 540   capped   539/540
(99 %)
2 diff
(99.7 %id)
DA889959   .b 55 to 612 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA550489   .b 59 to 638 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA647568   .b 59 to 804 2 to 754   capped   753/816
(92 %)
14 diff
(98.3 %id)
DA030089   .b 61 to 618 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
ES310350 scalp interfollicular dermis, skin .b 66 to 698 1 to 632       632/721
(87 %)
8 diff
(98.9 %id)
DA031395   .b 67 to 650 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA449933 tongue, tumor tissue .b 67 to 395 2 to 330   capped   329/329
(100 %)
4 diff
(98.8 %id)
BF306558 muscle, rhabdomyosarcoma .b 67 to 719 1 to 652       652/652
(100 %)
3 diff
(99.6 %id)
BG827264 muscle, rhabdomyosarcoma .b 67 to 638 1 to 570       570/570
(100 %)
6 diff
(99.0 %id)
BC021258 Muscle, rhabdomyosarcoma .b 68 to 1433 1 to 1366 exact available from MGC, AAA   1366/1366
(100 %)
2 diff
(99.9 %id)
DA757199   .b 68 to 612 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA750365   .b 69 to 626 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA752749   .b 69 to 625 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA766301 tongue .b 69 to 624 2 to 557   capped   556/556
(100 %)
4 diff
(99.3 %id)
DA857221 placenta .b 69 to 633 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA550723   .b 70 to 630 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA653312   .b 73 to 659 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
DA654493   .b 73 to 638 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA994349 synovial membrane tissue from rheumatioidarthritis .b 73 to 609 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
CN334836 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 76 to 703 1 to 628       628/628
(100 %)
3 diff
(99.6 %id)
BX417025 placenta .b 77 to 1000 1 to 924   tiling clone,   924/924
(100 %)
1 diff
(99.9 %id)
CK429347 eye, lacrimal gland .b 77 to 731 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
BE896501 melanotic melanoma, skin .b 78 to 718 1 to 635       635/922
(68 %)
16 diff
(98.3 %id)
BM926476 pooled lung and spleen .b 80 to 815 1 to 743       743/1447
(51 %)
14 diff
(99.1 %id)
DB217740 trachea .b 82 to 574 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
DB149758 thymus .b 90 to 643 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
CD634658   .b 100 to 804 1 to 706       706/706
(100 %)
5 diff
(99.3 %id)
DA438213 tongue, tumor tissue .b 107 to 650 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA420517 cervix .b 109 to 665 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DN999646   .b 130 to 794 9 to 673       665/673
(98 %)
9 diff
(98.7 %id)
DA521129 brain .b 147 to 707 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DR006111 Prostate .b 218 to 661 1 to 443       443/443
(100 %)
3 diff
(99.4 %id)
AF220027   .b 249 to 1604 8 to 1363 R136Q tiling clone,   1356/1363
(99 %)
7 diff
(99.5 %id)
TI_1948091863   .b 294 to 1069 131 to 906   fully sequenced,   776/906
(85 %)
7 diff
(99.3 %id)
TI_1948092013   .b 294 to 1066 128 to 900   fully sequenced,   773/900
(85 %)
7 diff
(99.3 %id)
TI_1948092167   .b 294 to 965 108 to 781   fully sequenced,   674/781
(86 %)
7 diff
(99.2 %id)
TI_1948092316   .b 294 to 1345 123 to 1202   fully sequenced,   1080/1202
(89 %)
61 diff
(95.0 %id)
BG054776 brain, glioblastoma (pooled) .b 721 to 1433 714 to 1       714/720
(99 %)
14 diff
(98.1 %id)
BU621580 cell lines, Chondrosarcoma .b 884 to 1433 570 to 19   AAA   552/552
(100 %)
3 diff
(99.5 %id)
TI_1948092168   .b 935 to 1346 526 to 112   fully sequenced,   415/526
(78 %)
1 diff
(99.9 %id)
AI146564 brain, glioblastoma (pooled) .b 976 to 1434 459 to 1       459/459
(100 %)
0 diff
(100 %id)
TI_1948091864   .b 1017 to 1346 450 to 121   fully sequenced,   330/450
(73 %)
0 diff
(100 %id)
TI_1948092014   .b 1017 to 1346 454 to 125   fully sequenced,   330/454
(72 %)
0 diff
(100 %id)
TI_1948092317   .b 1017 to 1346 452 to 123   fully sequenced,   330/452
(73 %)
0 diff
(100 %id)
AI468117 brain, glioblastoma (pooled) .b 1033 to 1433 400 to 1       400/400
(100 %)
5 diff
(98.8 %id)
AW206340   .b 1280 to 1725 463 to 18   AAA   446/446
(100 %)
2 diff
(99.6 %id)
AK074363   .b 1291 to 3232 1 to 1943   tiling clone, available from FLJ, AAA   1943/1943
(100 %)
4 diff
(99.8 %id)
AA463623.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1297 to 1732 436 to 1     also hits gene VPS33B 436/436
(100 %)
0 diff
(100 %id)
DB183861 liver, tumor tissue .b 1439 to 1994 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA040390 bladder .b 1463 to 2022 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
FN101220 breast carcinoma .b 1534 to 1630 1 to 97       97/97
(100 %)
2 diff
(98.0 %id)
BQ308093 breast .b 1566 to 2132 1 to 566       566/566
(100 %)
4 diff
(99.3 %id)
BQ308087 breast .b 1570 to 2132 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
BQ306461 breast .b 1571 to 2132 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
BQ308100 breast .b 1571 to 2141 1 to 569       569/579
(98 %)
4 diff
(99.4 %id)
CB958623 Pooled-Glandular .b 1674 to 2453 1 to 783       783/783
(100 %)
4 diff
(99.5 %id)
BG402175 Kidney .b 1716 to 2427 1 to 710       710/901
(78 %)
34 diff
(96.3 %id)
CD639984 pooled .b 1742 to 2470 1 to 724       724/726
(99 %)
11 diff
(98.5 %id)
BF739182 bladder_tumor .b 1750 to 2047 9 to 306       298/306
(97 %)
1 diff
(99.7 %id)
BI090893 cervix .b 1785 to 2476 1 to 694       694/697
(99 %)
6 diff
(99.2 %id)
BF334195 colon .b 1795 to 2309 22 to 529       508/529
(96 %)
6 diff
(98.9 %id)
CN335906 embryonic stem cells, cell lines H1, H7, andH9 .b 1795 to 2521 1 to 725       725/725
(100 %)
3 diff
(99.6 %id)
BI001217 head_normal .b 1846 to 2398 1 to 553       553/553
(100 %)
11 diff
(98.1 %id)
BQ359738 head_normal .b 1904 to 2351 68 to 514       447/514
(86 %)
6 diff
(98.9 %id)
CV360191 head_normal .b 1972 to 2478 1 to 516       516/520
(99 %)
18 diff
(96.6 %id)
BQ233712 epithelioid carcinoma, Pancreas .b 2013 to 2669 1 to 659       659/940
(70 %)
5 diff
(99.5 %id)
CB111578 Liver .b 2196 to 2718 1 to 526       526/526
(100 %)
4 diff
(99.3 %id)
BX417024 placenta .b 2240 to 3226 987 to 1   tiling clone,   987/987
(100 %)
7 diff
(99.3 %id)
R97448.
matches multiple genes
liver and spleen .b 2367 to 2813 1 to 451     also hits gene gynoyby 451/455
(99 %)
7 diff
(98.5 %id)
R97155 liver and spleen .b 2368 to 2681 1 to 315       315/315
(100 %)
2 diff
(99.4 %id)
H63007 liver and spleen .b 2462 to 2826 1 to 367       367/367
(100 %)
6 diff
(98.4 %id)
H60661 liver and spleen .b 2463 to 2874 1 to 427       427/433
(98 %)
17 diff
(96.1 %id)
BF339721 brain, glioblastoma with EGFR amplification .b 2511 to 3113 1 to 615       615/925
(66 %)
52 diff
(94.4 %id)
CA444489 Fibrosarcoma .b 2575 to 3242 687 to 19   AAA   669/669
(100 %)
5 diff
(99.3 %id)
TI_154099552   .b 2627 to 3246 717 to 97   AAA   621/716
(86 %)
15 diff
(98.0 %id)
DB366415   .b 2720 to 3296 575 to 1   tiling clone,   575/577
(99 %)
25 diff
(95.7 %id)
DB321586   .b 2749 to 3287 539 to 1       539/539
(100 %)
0 diff
(100 %id)
NM_033093.2   .c 1 to 2029 1 to 2029 exact RefSeq,   2029/2029
(100 %)
0 diff
(100 %id)
DA475412   .c 2 to 560 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DB142423 thymus .c 2 to 533 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DB110549 thymus .c 3 to 601 2 to 600   capped   599/599
(100 %)
3 diff
(99.5 %id)
DA289246 hippocampus .c 7 to 573 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA743675   .c 7 to 529 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA814120   .c 7 to 561 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA822051 pericardium .c 14 to 584 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB112649 thymus .c 14 to 583 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB151367 thymus .c 14 to 581 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB170862 kidney, tumor tissue .c 14 to 587 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DB163158 thymus .c 16 to 610 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
BG392644 embryonal carcinoma, cell line, testis .c 31 to 843 1 to 808       808/882
(91 %)
29 diff
(96.8 %id)
DA480266   .c 37 to 594 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA657319   .c 37 to 603 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA762745 tongue .c 37 to 611 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA870242 Prostate .c 37 to 556 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DB138116 thymus .c 37 to 572 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DB279226 uterus .c 37 to 574 2 to 539   capped   538/545
(98 %)
2 diff
(99.7 %id)
DB279621 uterus .c 37 to 572 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BE906829 epithelioid carcinoma, Pancreas .c 48 to 791 1 to 745       745/766
(97 %)
19 diff
(97.6 %id)
DA386156 thalamus .c 59 to 580 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
CN334835 embryonic stem cells, cell lines H1, H7, andH9 .c 61 to 684 1 to 624       624/624
(100 %)
4 diff
(99.4 %id)
BQ425056 melanotic melanoma, skin .c 61 to 844 1 to 792       792/840
(94 %)
15 diff
(98.3 %id)
DA032949   .c 68 to 647 2 to 582   capped   581/581
(100 %)
5 diff
(99.2 %id)
CR616862 Placenta Cot 25-normalized .c 68 to 1583 1 to 1516 exact tiling clone,   1516/1516
(100 %)
0 diff
(100 %id)
BX335023 Placenta Cot 25-normalized .c 68 to 1191 1 to 1118 E204G K205E E206G E207G E208G ...     1118/1126
(99 %)
35 diff
(96.9 %id)
BX402271 Placenta Cot 25-normalized .c 68 to 1191 1 to 1112 G249D V294X S301X A302Z M303W ...     1112/1117
(99 %)
25 diff
(97.8 %id)
DB142704 thymus .c 68 to 574 2 to 508   capped   507/513
(98 %)
2 diff
(99.7 %id)
DA558532   .c 73 to 632 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
AF220028   .c 101 to 1657 8 to 1564 R136Q AAA   1557/1564
(99 %)
7 diff
(99.6 %id)
DR005537 Prostate .c 118 to 721 1 to 604       604/604
(100 %)
3 diff
(99.6 %id)
CV029096 mixed .c 156 to 726 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
CN334837 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 193 to 827 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
BY796535 eye .c 399 to 1003 1 to 605       605/605
(100 %)
1 diff
(99.9 %id)
BX402270 Placenta Cot 25-normalized .c 465 to 1440 1060 to 92       969/1107
(87 %)
15 diff
(98.7 %id)
BX335022 Placenta Cot 25-normalized .c 570 to 1583 1012 to 1       1012/1012
(100 %)
10 diff
(99.1 %id)
AA298263 Prostate .c 619 to 839 1 to 221       221/221
(100 %)
2 diff
(99.1 %id)
BG165753 hypernephroma, cell line, Kidney .c 654 to 1417 1 to 756       756/953
(79 %)
10 diff
(99.0 %id)
CV571286 cornea, eye .c 723 to 848 1 to 126       126/126
(100 %)
0 diff
(100 %id)
AA443040 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 914 to 1022 1 to 109       109/109
(100 %)
9 diff
(91.8 %id)
AA903389 pooled germ cell tumors .c 1486 to 1988 503 to 1   tiling clone,   503/503
(100 %)
2 diff
(99.7 %id)
AL600235   .c 1538 to 2029 492 to 1     Submitted on the opposite strand 492/492
(100 %)
8 diff
(98.4 %id)
AL600260   .c 1619 to 2029 411 to 1   tiling clone, Submitted on the opposite strand 411/411
(100 %)
8 diff
(98.1 %id)
DB082844 testis .d 1 to 558 2 to 560   tiling clone, capped   559/559
(100 %)
3 diff
(99.5 %id)
R15339 whole brain .d 564 to 1041 1 to 490   tiling clone,   490/512
(95 %)
20 diff
(96.1 %id)
BI260626 cervical carcinoma cell line, cervix .d 988 to 1732 1 to 751   tiling clone,   751/792
(94 %)
21 diff
(97.4 %id)
BE765572 nervous_tumor .d 1107 to 1411 322 to 18       305/322
(94 %)
1 diff
(99.7 %id)
AV661236 corresponding non cancerous liver tissue .d 1481 to 1896 1 to 416     Submitted on the opposite strand 416/416
(100 %)
1 diff
(99.8 %id)
AV661318 corresponding non cancerous liver tissue .d 1481 to 1896 1 to 416     Submitted on the opposite strand 416/416
(100 %)
0 diff
(100 %id)
AV661363 corresponding non cancerous liver tissue .d 1481 to 1896 1 to 416     Submitted on the opposite strand 416/416
(100 %)
2 diff
(99.6 %id)
DB340942 testis .d 1488 to 2027 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
CA441064 Fibrosarcoma .d 1505 to 1977 491 to 19   AAA   473/473
(100 %)
0 diff
(100 %id)
AW983570 head_normal .d 1513 to 1853 350 to 10     Submitted on the opposite strand 341/353
(96 %)
0 diff
(100 %id)
CR738154   .d 1541 to 2022 498 to 15   AAA   484/484
(100 %)
4 diff
(99.2 %id)
H88556 cochlea, ear .d 1564 to 1915 1 to 357       357/357
(100 %)
27 diff
(92.5 %id)
BM990523 lung, Metastatic Chondrosarcoma .d 1590 to 2023 452 to 19   AAA   434/434
(100 %)
5 diff
(98.9 %id)
AW079157 colon, juvenile granulosa tumor .d 1610 to 2026 423 to 2       422/524
(80 %)
0 diff
(100 %id)
R42235 whole brain .d 1645 to 2022 393 to 11   AAA   383/385
(99 %)
9 diff
(97.7 %id)
BF941889 sciatic nerve .d 1669 to 2024 357 to 2       356/357
(99 %)
0 diff
(100 %id)
AW769590 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .d 1916 to 2024 110 to 3       108/114
(94 %)
0 diff
(100 %id)
BM719062 eye, fetal eye .e 1 to 638 1 to 638   tiling clone, fully sequenced,   638/638
(100 %)
1 diff
(99.9 %id)
BM683037 eye, fetal eye .e 608 to 1189 600 to 19   tiling clone, fully sequenced, AAA   582/582
(100 %)
0 diff
(100 %id)
BG621824 placenta .f 1 to 626 1 to 627   tiling clone, available from MGC,   627/627
(100 %)
12 diff
(98.1 %id)
BC020770 placenta .f 2 to 1064 1 to 1063   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1063/1083
(98 %)
6 diff
(99.5 %id)
CN334833 embryonic stem cells, cell lines H1, H7, andH9 .f 408 to 563 1 to 156       156/156
(100 %)
3 diff
(98.1 %id)
CN334834 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 430 to 645 1 to 216       216/216
(100 %)
4 diff
(98.2 %id)
CF144759 CNCAP(3)T-225 cell line, Prostate .f 461 to 574 1 to 114       114/114
(100 %)
4 diff
(96.5 %id)
BF381218 uterus_tumor .f 719 to 932 22 to 231       210/231
(90 %)
9 diff
(96.2 %id)
BF911950 uterus_tumor .f 719 to 932 9 to 219       211/219
(96 %)
6 diff
(97.3 %id)
BQ378933 uterus_tumor .f 719 to 870 8 to 158       151/158
(95 %)
6 diff
(96.3 %id)
BQ330942 lung_tumor .f 765 to 1373 621 to 14   tiling clone,   608/630
(96 %)
10 diff
(98.5 %id)
DA290879 hippocampus .g 1 to 580 2 to 581   tiling clone, capped   580/580
(100 %)
4 diff
(99.4 %id)
AF220029   .g 284 to 3039 8 to 2764 exact tiling clone, AAA   2757/2764
(99 %)
8 diff
(99.8 %id)
BF064083 colon, colon tumor, RER+ .h 1 to 550 554 to 5 K2Q L3F E6Q Q8H K9T ... tiling clone,   550/554
(99 %)
18 diff
(96.8 %id)
BF381213 uterus_tumor .h 41 to 525 6 to 492   tiling clone,   487/492
(98 %)
16 diff
(96.8 %id)
BF381221 uterus_tumor .h 42 to 687 1 to 649   tiling clone,   649/649
(100 %)
15 diff
(97.7 %id)
BF381192 uterus_tumor .h 48 to 581 1 to 530       530/530
(100 %)
17 diff
(96.8 %id)
BF381228 uterus_tumor .h 60 to 580 1 to 520       520/520
(100 %)
15 diff
(97.2 %id)
BF381196 uterus_tumor .h 95 to 568 29 to 498       470/498
(94 %)
10 diff
(98.0 %id)
BQ378934 uterus_tumor .h 158 to 743 585 to 3       583/585
(99 %)
4 diff
(99.4 %id)
BF381227 uterus_tumor .h 182 to 751 570 to 4       567/570
(99 %)
1 diff
(99.9 %id)
BF381186 uterus_tumor .h 195 to 673 483 to 5       479/483
(99 %)
2 diff
(99.6 %id)
BF381204 uterus_tumor .h 195 to 743 553 to 8       546/553
(98 %)
1 diff
(99.9 %id)
BQ379005 uterus_tumor .h 200 to 745 548 to 3   tiling clone,   546/548
(99 %)
1 diff
(99.9 %id)
BF911943 uterus_tumor .h 204 to 628 434 to 8     Submitted on the opposite strand 427/434
(98 %)
1 diff
(99.8 %id)
BF381199 uterus_tumor .h 213 to 751 542 to 8       535/543
(98 %)
2 diff
(99.7 %id)
BQ379574 uterus_tumor .h 218 to 703 486 to 2       485/486
(99 %)
1 diff
(99.8 %id)
BF381214 uterus_tumor .h 225 to 750 524 to 1       524/524
(100 %)
12 diff
(97.8 %id)
BF381205 uterus_tumor .h 229 to 739 509 to 1       509/509
(100 %)
18 diff
(96.5 %id)
BF381224 uterus_tumor .h 233 to 743 513 to 4       510/513
(99 %)
0 diff
(100 %id)
BF381223 uterus_tumor .h 235 to 746 519 to 8       512/519
(98 %)
0 diff
(100 %id)
BQ379572 uterus_tumor .h 242 to 687 448 to 3       446/448
(99 %)
0 diff
(100 %id)
BF381189 uterus_tumor .h 246 to 746 503 to 4   tiling clone,   500/503
(99 %)
0 diff
(100 %id)
BQ378930 uterus_tumor .h 330 to 751 430 to 9       422/430
(98 %)
0 diff
(100 %id)
BQ378648 uterus_tumor .h 348 to 673 329 to 4       326/329
(99 %)
0 diff
(100 %id)
BQ380441 uterus_tumor .h 607 to 752 145 to 1   tiling clone,   145/145
(100 %)
6 diff
(95.9 %id)
D45474 lung .i 1 to 359 1 to 363 E39X D42V Q44* tiling clone, Submitted on the opposite strand 363/367
(98 %)
7 diff
(98.1 %id)
BF352548 head_neck .j-u 1 to 380 18 to 397   tiling clone,   380/409
(92 %)
5 diff
(98.8 %id)
BF352578 head_neck .j-u 1 to 380 21 to 400   tiling clone,   380/412
(92 %)
4 diff
(99.1 %id)
BX485199   .j-u 171 to 823 8 to 660   tiling clone,   653/660
(98 %)
6 diff
(99.1 %id)
BX498665 Liver .j-u 571 to 1074 1 to 504 exact tiling clone,   504/504
(100 %)
8 diff
(98.5 %id)
DB233899 trachea .k 1 to 605 3 to 608 exact tiling clone, capped   607/607
(100 %)
4 diff
(99.4 %id)
DA941901 Spleen .l-u 1 to 580 2 to 581 exact tiling clone, capped   580/581
(99 %)
1 diff
(99.9 %id)
AW070503 pooled .m 1 to 433 443 to 11 exact tiling clone, AAA   433/433
(100 %)
0 diff
(100 %id)
AA861215   .m 333 to 435 104 to 2   tiling clone,   103/104
(99 %)
0 diff
(100 %id)
DW419962 Liver .n-u 1 to 292 302 to 11 exact tiling clone,   292/302
(96 %)
0 diff
(100 %id)
BM973418 lung Gene TRIM5, variant not shown         This clone was ignored    
CV573122 cornea, eye Gene TRIM5, variant not shown              
BX647152 human salivary gland Gene TRIM5, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
BQ378929 uterus_tumor Gene TRIM5, variant not shown         This clone was ignored    
BQ378935 uterus_tumor Gene TRIM5, variant not shown         This clone was ignored    
AA350349 brain Gene TRIM5, variant not shown       AAA This clone was ignored    
AL589370 human spinal cord Gene TRIM5, variant not shown              
AL589371 human spinal cord Gene TRIM5, variant not shown              
DA656105   Gene TRIM5, variant not shown       capped      
D31267   Gene TRIM5, variant not shown              
D31441   Gene TRIM5, variant not shown              
D31457   Gene TRIM5, variant not shown              
DB308929 hippocampus Gene TRIM5, variant not shown              
DA318250 hippocampus Gene TRIM5, variant not shown       capped      
BE672870 pooled germ cell tumors Gene TRIM5, variant not shown         Suspected internal deletion, this clone was ignored    
BF699670 brain, primitive neuroectoderm Gene TRIM5, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BM542328 melanotic melanoma, skin Gene TRIM5, variant not shown         Suspected internal deletion, this clone was ignored    
TI_149290420   Gene TRIM5, variant not shown         This clone was ignored    
TI_153990346   Gene TRIM5, variant not shown       AAA      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI