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Gene TRIM4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene TRIM4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF220023   .a 1 to 2457 932 to 3388 exact tiling clone, AAA   2457/3388
(72 %)
5 diff
(99.9 %id)
AF220024   .a 1 to 2457 854 to 3310 exact AAA   2457/3310
(74 %)
5 diff
(99.9 %id)
AK092892 Spleen .a 1 to 1970 879 to 2848 P102S S209C available from FLJ,   1970/2848
(69 %)
6 diff
(99.8 %id)
AK293565 cerebellum .a 1 to 1242 771 to 2012 exact     1242/2012
(61 %)
2 diff
(100.0 %id)
AX747794   .a 1 to 1970 879 to 2848 P102S S209C     1970/2848
(69 %)
6 diff
(99.8 %id)
CB154036 brain .a 1 to 498 25 to 522   tiling clone,   498/522
(95 %)
0 diff
(100 %id)
DA254543 caudate nucleus .a 1 to 490 86 to 575   capped   490/574
(85 %)
2 diff
(99.7 %id)
BQ212202 embryonal carcinoma, cell line, testis .a 1 to 492 369 to 862       494/870
(56 %)
10 diff
(98.9 %id)
NM_033017.3   .a 1 to 2464 995 to 3458 exact RefSeq,   2464/3458
(71 %)
0 diff
(100 %id)
NM_033091.2   .a 1 to 2464 917 to 3380 exact RefSeq,   2464/3380
(72 %)
0 diff
(100 %id)
T16916   .a 1 to 304 51 to 354       304/354
(85 %)
0 diff
(100 %id)
BQ421109 large cell carcinoma, lung .a 25 to 916 17 to 915       901/915
(98 %)
22 diff
(97.6 %id)
DA926454 small intestine .a 30 to 602 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
CA489456   .a 96 to 952 1 to 867       867/868
(99 %)
16 diff
(98.2 %id)
CB217057 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 118 to 832 6 to 720       715/720
(99 %)
0 diff
(100 %id)
BF208288 bladder, carcinoma, cell line .a 130 to 460 1 to 343       343/344
(99 %)
9 diff
(97.4 %id)
DN916022   .a 171 to 778 1 to 604       604/608
(99 %)
10 diff
(98.4 %id)
BF211564 bone marrow, from chronic myelogenous leukemia .a 173 to 645 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
CD706974 normal nasopharynx .a 277 to 616 25 to 366       342/366
(93 %)
0 diff
(100 %id)
CD694949 normal nasopharynx .a 316 to 873 75 to 632       558/632
(88 %)
0 diff
(100 %id)
DA902038   .a 325 to 895 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AW800986 uterus .a 366 to 566 210 to 10       201/232
(86 %)
0 diff
(100 %id)
BM926325 brain .a 420 to 1369 20 to 980       961/1066
(90 %)
24 diff
(97.8 %id)
BG536074 lung .a 467 to 594 363 to 499       467/538
(86 %)
15 diff
(97.3 %id)
AA382736 testis .a 492 to 784 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
BU941273 mixed (pool of 40 RNAs) .a 544 to 1429 1 to 884       884/917
(96 %)
32 diff
(96.6 %id)
CD518407 White Matter .a 552 to 1361 30 to 845       816/845
(96 %)
0 diff
(100 %id)
DN916102   .a 611 to 1219 1 to 600       600/602
(99 %)
12 diff
(98.1 %id)
BG496034 lung, mucoepidermoid carcinoma .a 624 to 1243 1 to 620       620/775
(80 %)
36 diff
(95.4 %id)
BG250063 adenocarcinoma, cell line, Liver .a 638 to 1421 1 to 788       788/969
(81 %)
20 diff
(98.0 %id)
N38858 multiple sclerosis lesions .a 669 to 772 1 to 104       104/104
(100 %)
0 diff
(100 %id)
BF874644 lung_tumor .a 692 to 1012 337 to 7     Submitted on the opposite strand 331/354
(93 %)
0 diff
(100 %id)
BG987484 head_neck .a 700 to 947 104 to 351       248/351
(70 %)
0 diff
(100 %id)
C17548 placenta .a 702 to 1139 1 to 435       435/435
(100 %)
8 diff
(98.2 %id)
BG258046 embryonal carcinoma, cell line, testis .a 709 to 1251 1 to 544       544/544
(100 %)
2 diff
(99.7 %id)
AA234275 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 724 to 1138 414 to 1     Submitted on the opposite strand 414/414
(100 %)
1 diff
(99.8 %id)
AV749127 Pituitary .a 783 to 1237 1 to 450       450/550
(81 %)
8 diff
(98.6 %id)
N20193 melanocyte .a 819 to 1201 1 to 385     Submitted on the opposite strand 385/385
(100 %)
3 diff
(99.3 %id)
BF340094 brain, glioblastoma with EGFR amplification .a 839 to 1657 13 to 815       803/823
(97 %)
41 diff
(95.1 %id)
AL568100.
matches multiple genes
brain, fetal brain .a 842 to 1942 1093 to 1     also hits gene PTGES3 1093/1139
(95 %)
23 diff
(98.0 %id)
AA370143 Prostate .a 843 to 1016 1 to 174       174/174
(100 %)
0 diff
(100 %id)
AW957200   .a 844 to 1474 1 to 629       629/632
(99 %)
11 diff
(98.3 %id)
AV688492 hepatocellular carcinoma .a 942 to 1322 16 to 392       377/393
(95 %)
20 diff
(95.0 %id)
FN081235 breast carcinoma .a 947 to 1005 1 to 59       59/60
(98 %)
1 diff
(98.4 %id)
BI001911 head_normal .a 991 to 1521 534 to 3       532/534
(99 %)
0 diff
(100 %id)
BI017551 lung_tumor .a 1002 to 1253 13 to 266       254/266
(95 %)
0 diff
(100 %id)
BQ346000 nervous_tumor .a 1012 to 1356 2 to 343       342/343
(99 %)
0 diff
(100 %id)
FN114996 breast carcinoma .a 1044 to 1137 1 to 95       95/113
(84 %)
4 diff
(96.5 %id)
BM726767 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1061 to 1517 1 to 457   fully sequenced,   457/457
(100 %)
0 diff
(100 %id)
BG778192 adenocarcinoma, Prostate .a 1064 to 1692 1 to 629       629/629
(100 %)
5 diff
(99.3 %id)
AW368076 head_neck .a 1205 to 1547 362 to 11       352/380
(92 %)
0 diff
(100 %id)
AW368054 head_neck .a 1209 to 1541 1 to 333       333/333
(100 %)
2 diff
(99.4 %id)
AW368059 head_neck .a 1209 to 1541 1 to 333       333/333
(100 %)
4 diff
(98.8 %id)
BQ346006 nervous_tumor .a 1243 to 1659 438 to 21       418/445
(93 %)
0 diff
(100 %id)
BQ018086 Fibrosarcoma .a 1262 to 1970 726 to 19   AAA   708/708
(100 %)
7 diff
(99.1 %id)
AW886449 ovary .a 1263 to 1795 541 to 9       533/548
(97 %)
2 diff
(99.7 %id)
CB857815 anterior tongue, pooled .a 1295 to 1778 108 to 592       485/592
(81 %)
0 diff
(100 %id)
CB070268 Pancreas, Purified pancreatic islet .a 1299 to 1676 39 to 416       378/416
(90 %)
0 diff
(100 %id)
TI_154036070   .a 1324 to 1918 677 to 83   AAA   595/957
(62 %)
2 diff
(99.8 %id)
CA444302 lung, Metastatic Chondrosarcoma .a 1324 to 1918 613 to 19   AAA   595/610
(97 %)
2 diff
(99.7 %id)
CR609720 B cells (Ramos cell line) Cot 25-normalized .a 1332 to 1971 1 to 640   tiling clone,   640/640
(100 %)
0 diff
(100 %id)
BX342532   .a 1332 to 1971 1 to 643       643/643
(100 %)
6 diff
(99.1 %id)
CA307154 Alveolar Macrophage, lung .a 1337 to 1970 652 to 19   AAA   634/634
(100 %)
3 diff
(99.6 %id)
TI_154148588   .a 1373 to 1976 683 to 80     Submitted on the opposite strand 604/614
(98 %)
0 diff
(100 %id)
TI_149284814   .a 1377 to 1970 679 to 87   AAA   593/1080
(54 %)
26 diff
(97.6 %id)
EB385469 eye, optic nerve .a 1380 to 2206 1 to 827       827/827
(100 %)
1 diff
(99.9 %id)
CA950602 Pancreas, Purified pancreatic islet .a 1399 to 1927 1 to 529       529/529
(100 %)
2 diff
(99.7 %id)
DB316917.
matches multiple genes
brain .a 1414 to 1915 505 to 3     also hits gene rikumu 503/507
(99 %)
0 diff
(100 %id)
BM999122 lung, Lung Focal Fibrosis .a 1421 to 1970 568 to 19   AAA   550/550
(100 %)
9 diff
(98.4 %id)
BE217950 carcinoid, lung .a 1427 to 1971 548 to 4       545/548
(99 %)
0 diff
(100 %id)
DB332152 small intestine .a 1428 to 1970 544 to 1       544/544
(100 %)
4 diff
(99.3 %id)
BQ186783 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1435 to 1918 1 to 484   fully sequenced, AAA   484/484
(100 %)
0 diff
(100 %id)
TI_151732663   .a 1435 to 1918 564 to 81   AAA   484/1014
(47 %)
0 diff
(100 %id)
DB332760.
matches multiple genes
Spleen .a 1440 to 1970 531 to 1     also hits gene tutemu 531/531
(100 %)
4 diff
(99.3 %id)
BE501464 Kidney .a 1443 to 1919 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
N29094 melanocyte .a 1447 to 1851 411 to 1     Submitted on the opposite strand 411/413
(99 %)
11 diff
(97.4 %id)
BF447209 Prostate .a 1458 to 1971 518 to 5       514/518
(99 %)
0 diff
(100 %id)
AA345920 gall bladder .a 1463 to 1745 1 to 285       285/285
(100 %)
5 diff
(98.3 %id)
AI139030 uterus .a 1464 to 1926 483 to 21   AAA   463/463
(100 %)
1 diff
(99.8 %id)
BX113412 melanocyte .a 1476 to 1969 507 to 14   AAA   494/494
(100 %)
3 diff
(99.4 %id)
AI951267 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .a 1482 to 1970 490 to 1       490/490
(100 %)
4 diff
(99.2 %id)
BU741082 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1487 to 1915 447 to 19   fully sequenced, AAA   429/429
(100 %)
0 diff
(100 %id)
N34697 melanocyte .a 1490 to 1971 484 to 3     Submitted on the opposite strand 482/487
(98 %)
0 diff
(100 %id)
DB545811.
matches multiple genes
hippocampus .a 1495 to 1970 1 to 481     Submitted on the opposite strand, also hits gene tutemu 481/481
(100 %)
5 diff
(99.0 %id)
DB549984 hippocampus .a 1498 to 1970 1 to 473     Submitted on the opposite strand 473/473
(100 %)
2 diff
(99.6 %id)
BE552444 Kidney .a 1499 to 1976 480 to 3       478/480
(99 %)
0 diff
(100 %id)
R58838   .a 1503 to 1921 419 to 1       419/419
(100 %)
2 diff
(99.6 %id)
AI669528 Prostate .a 1514 to 1970 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
AI687092 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 1517 to 1929 414 to 1       414/414
(100 %)
2 diff
(99.6 %id)
BU680674 lung, Primary Lung Epithelial Cells .a 1517 to 1970 471 to 19   AAA   453/453
(100 %)
6 diff
(98.7 %id)
AI768527 Kidney .a 1534 to 1971 444 to 5       440/444
(99 %)
0 diff
(100 %id)
BF589892 Kidney .a 1535 to 1971 441 to 5       437/441
(99 %)
0 diff
(100 %id)
AA663944 lung .a 1555 to 1967 413 to 1       413/415
(99 %)
1 diff
(99.8 %id)
BX475026   .a 1560 to 1970 1 to 411   AAA   411/411
(100 %)
3 diff
(99.3 %id)
BE083976 breast .a 1564 to 1791 37 to 263       227/282
(80 %)
5 diff
(98.3 %id)
AA769868 liver and spleen .a 1577 to 1970 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
AI753924 bone marrow stroma .a 1580 to 1971 417 to 26   AAA   392/392
(100 %)
2 diff
(99.5 %id)
AI436649 pooled .a 1593 to 1970 390 to 13   AAA   378/378
(100 %)
3 diff
(99.3 %id)
AI868990 Prostate .a 1605 to 1916 312 to 1       312/312
(100 %)
2 diff
(99.4 %id)
BI966807 Islets of Langerhans, Pancreas .a 1619 to 1918 312 to 13   AAA   300/300
(100 %)
0 diff
(100 %id)
CK903609 Islets of Langerhans, Pancreas .a 1619 to 1918 312 to 13   AAA   300/300
(100 %)
1 diff
(99.7 %id)
AW408668 lymph .a 1622 to 1976 364 to 10     Submitted on the opposite strand 355/364
(97 %)
0 diff
(100 %id)
AA737124 Ewing's sarcoma .a 1636 to 1925 304 to 15       290/304
(95 %)
0 diff
(100 %id)
AA195238.
matches multiple genes
  .a 1642 to 1920 283 to 3     also hits gene tutemu 281/285
(98 %)
0 diff
(100 %id)
CK299900 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1662 to 1917 275 to 20   fully sequenced, AAA   256/256
(100 %)
0 diff
(100 %id)
BP420456 small intestine .a 1693 to 1970 323 to 46   AAA   278/296
(93 %)
1 diff
(99.7 %id)
FN118101 breast carcinoma .a 1726 to 1830 102 to 1     Submitted on the opposite strand 102/104
(98 %)
3 diff
(97.2 %id)
AA730721 Ewing's sarcoma .a 1734 to 1925 206 to 15   AAA   192/192
(100 %)
0 diff
(100 %id)
BU633314 cell lines, Chondrosarcoma .a 1737 to 2457 739 to 19   AAA   721/721
(100 %)
1 diff
(99.9 %id)
N71568 liver and spleen .a 1743 to 1971 235 to 2       234/239
(97 %)
0 diff
(100 %id)
AI202226 Prostate .a 1743 to 1970 245 to 18   AAA   228/228
(100 %)
4 diff
(98.3 %id)
AA992148   .a 1749 to 1930 186 to 5       182/186
(97 %)
0 diff
(100 %id)
AW965214   .a 1786 to 2464 680 to 1     Submitted on the opposite strand 680/680
(100 %)
9 diff
(98.7 %id)
FN074101 breast carcinoma .a 1808 to 1876 68 to 1     Submitted on the opposite strand 68/69
(98 %)
1 diff
(98.6 %id)
FN054635 breast carcinoma .a 1811 to 1876 66 to 1     Submitted on the opposite strand 66/71
(92 %)
0 diff
(100 %id)
AI073369 pooled .a 1998 to 2466 469 to 1       469/469
(100 %)
2 diff
(99.6 %id)
CD704251 normal nasopharynx Gene TRIM4, variant not shown         Suspected internal deletion, this clone was ignored    
DB371785 ovary, tumor tissue Gene TRIM4, variant not shown         Suspected internal deletion, this clone was ignored    
DA812425 ovary, tumor tissue Gene TRIM4, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes