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Gene TRIM26TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
502 supporting clones for gene TRIM26 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA186610 amygdala .a 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
DB231580 trachea .a 21 to 615 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
BP288591 lung .a 28 to 609 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA161699 amygdala .a 31 to 498 2 to 469   capped   468/468
(100 %)
1 diff
(99.8 %id)
DA852416 placenta .a 32 to 586 2 to 556   capped   555/556
(99 %)
2 diff
(99.7 %id)
DA990013 synovial membrane tissue from rheumatioidarthritis .a 32 to 559 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
DA128022 cerebellum .a 50 to 638 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DA190769 amygdala .a 50 to 638 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA092900 cerebellum .a 55 to 498 2 to 445   capped   444/444
(100 %)
1 diff
(99.8 %id)
DA650689   .a 55 to 593 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA116471 cerebellum .a 60 to 635 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA119967 cerebellum .a 63 to 613 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA411451 thalamus .a 63 to 622 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA414126 thalamus .a 63 to 625 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BP287337 lung .a 63 to 644 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA927599 small intestine .a 63 to 594 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA992272 synovial membrane tissue from rheumatioidarthritis .a 63 to 600 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA116119 cerebellum .a 64 to 650 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BP287739 lung .a 66 to 646 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA109258 cerebellum .a 71 to 641 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB222978 trachea .a 90 to 650 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB237525 trachea .a 90 to 659 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA090299 cerebellum .a 91 to 662 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA121951 cerebellum .a 91 to 611 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA760158   .a 91 to 631 2 to 542   capped   541/541
(100 %)
3 diff
(99.5 %id)
DA802774 brain .a 91 to 654 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB048492 testis .a 91 to 644 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB155725 thymus .a 91 to 694 2 to 605   capped   604/604
(100 %)
2 diff
(99.7 %id)
DB213958 trachea .a 91 to 645 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
DA195357 amygdala .a 93 to 645 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA850917 placenta .a 93 to 628 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA855565 placenta .a 93 to 646 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA953487 Spleen .a 93 to 649 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB087127 testis .a 93 to 653 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB144535 thymus .a 93 to 573 2 to 482   capped   481/481
(100 %)
1 diff
(99.8 %id)
DB161532 thymus .a 93 to 658 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB239711 trachea .a 93 to 681 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA213664 brain .a 94 to 646 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA857476 placenta .a 94 to 658 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
CN276785 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 105 to 686 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
CN276787 embryonic stem cells, cell lines H1, H7, andH9 .a 106 to 778 1 to 673       673/673
(100 %)
0 diff
(100 %id)
CR977905 T-Lymphocytes .a 108 to 825 1 to 721       721/721
(100 %)
4 diff
(99.5 %id)
BC032297 Brain, anaplastic oligodendroglioma with1p/19q loss .a 113 to 3343 11 to 3241 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3231/3231
(100 %)
0 diff
(100 %id)
BG912227 anaplastic oligodendroglioma with 1p/19qloss, brain .a 115 to 746 1 to 658       658/796
(82 %)
39 diff
(95.2 %id)
DR156807 human embryonic stem cells differentiated toan early endodermal cell type .b 1 to 810 1 to 810   tiling clone,   810/810
(100 %)
0 diff
(100 %id)
U09825   .b 30 to 3279 346 to 3595 exact tiling clone,   3252/3595
(90 %)
10 diff
(99.8 %id)
BM717724 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1540 to 2213 1 to 674     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 674/674
(100 %)
1 diff
(99.9 %id)
AA293702 ovarian tumor, ovary .b 2011 to 2427 1 to 417     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 417/422
(98 %)
1 diff
(99.8 %id)
AA291839 ovarian tumor, ovary .b 2018 to 2416 1 to 400       400/400
(100 %)
4 diff
(99.0 %id)
AA421952 ovarian tumor, ovary .b 2018 to 2585 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
BQ946494 leiomyosarcoma, uterus .b 2084 to 3021 1 to 942       942/953
(98 %)
16 diff
(98.4 %id)
AA004605 liver and spleen .b 2305 to 2420 1 to 117       117/117
(100 %)
2 diff
(98.3 %id)
W89013 liver and spleen .b 2306 to 2825 1 to 521   fully sequenced,   521/521
(100 %)
1 diff
(99.9 %id)
BQ899355 sciatic nerve .b 2352 to 3239 1 to 887       887/887
(100 %)
5 diff
(99.5 %id)
N76346 liver and spleen .b 2432 to 2902 1 to 475   fully sequenced,   475/475
(100 %)
7 diff
(98.6 %id)
BI259021 cervical carcinoma cell line, cervix .b 2459 to 3264 1 to 807       807/807
(100 %)
9 diff
(98.9 %id)
R05598 liver and spleen .b 2488 to 2931 1 to 452       452/453
(99 %)
21 diff
(95.4 %id)
N58626 liver and spleen .b 2504 to 2751 1 to 249       249/254
(98 %)
5 diff
(98.1 %id)
BI857083 breast, mammary adenocarcinoma, cell line .b 2525 to 3283 1 to 763       763/780
(97 %)
11 diff
(98.6 %id)
TI_57186731   .b 2525 to 3283 48 to 810       763/817
(93 %)
11 diff
(98.7 %id)
CB158313 Liver .b 2558 to 3166 1 to 609       609/609
(100 %)
3 diff
(99.6 %id)
TI_149307651   .b 2590 to 3278 803 to 115   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 689/918
(75 %)
2 diff
(99.8 %id)
AW794707 uterus .b 2595 to 3032 16 to 453       438/453
(96 %)
6 diff
(98.7 %id)
AW383781 head_neck .b 2608 to 3131 547 to 24       524/552
(94 %)
0 diff
(100 %id)
AW794713 uterus .b 2611 to 3032 1 to 422       422/422
(100 %)
3 diff
(99.3 %id)
AA463352 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2612 to 3085 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BU620706 cell lines, Chondrosarcoma .b 2627 to 3278 671 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 653/653
(100 %)
1 diff
(99.9 %id)
BM674919 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2628 to 3278 669 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 651/651
(100 %)
0 diff
(100 %id)
BU620077 Cell Line, Chondrosarcoma .b 2628 to 3278 670 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 652/652
(100 %)
1 diff
(99.9 %id)
BQ002468 Chondrosarcoma, Left Pelvis .b 2629 to 3278 668 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 650/650
(100 %)
3 diff
(99.6 %id)
BM979398 lung, Primary Lung Epithelial Cells .b 2631 to 3278 662 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 648/648
(100 %)
1 diff
(99.9 %id)
CB243645 Human Lung Epithelial cells, lung .b 2631 to 3278 662 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 648/648
(100 %)
1 diff
(99.9 %id)
BF821356 kidney_tumor .b 2632 to 2993 370 to 11     Submitted on the opposite strand 360/370
(97 %)
0 diff
(100 %id)
H75717 liver and spleen .b 2636 to 3044 1 to 416       416/466
(89 %)
12 diff
(97.5 %id)
W77910 heart .b 2637 to 3081 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
BM998039 lung, Metastatic Chondrosarcoma .b 2661 to 3280 637 to 17       621/637
(97 %)
0 diff
(100 %id)
R10593 liver and spleen .b 2663 to 2995 1 to 344   fully sequenced,   344/344
(100 %)
15 diff
(95.7 %id)
BM466892 eye, retinoblastoma .b 2671 to 3285 51 to 665       615/1114
(55 %)
4 diff
(99.7 %id)
BF841067 head_neck .b 2696 to 3100 411 to 5     Submitted on the opposite strand 407/412
(98 %)
0 diff
(100 %id)
CA308674 Alveolar Macrophage, lung .b 2704 to 3285 601 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 583/583
(100 %)
3 diff
(99.5 %id)
BQ006003 Chondrosarcoma, Left Pelvis .b 2714 to 3281 584 to 16   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 569/569
(100 %)
3 diff
(99.5 %id)
AA250990 germinal center B cell .b 2751 to 3057 1 to 307   fully sequenced,   307/307
(100 %)
1 diff
(99.7 %id)
H69622 liver and spleen .b 2752 to 3019 1 to 275   fully sequenced,   275/275
(100 %)
0 diff
(100 %id)
AA923154 carcinoid, lung .b 2758 to 3280 524 to 4       521/524
(99 %)
0 diff
(100 %id)
AA173177   .b 2763 to 3278 532 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 514/517
(99 %)
7 diff
(98.7 %id)
BU736746 eye, Retina Foveal and Macular .b 2765 to 3273 531 to 23   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 509/518
(98 %)
0 diff
(100 %id)
AA421953 ovarian tumor, ovary .b 2767 to 3280 516 to 4       513/516
(99 %)
0 diff
(100 %id)
AI076174 liver and spleen .b 2773 to 3278 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AA293588 ovarian tumor, ovary .b 2777 to 3280 505 to 4       502/505
(99 %)
0 diff
(100 %id)
TI_159707443   .b 2778 to 3288 611 to 99   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 513/1005
(51 %)
59 diff
(94.2 %id)
BQ340011 nervous_normal .b 2781 to 3129 382 to 37       346/382
(90 %)
0 diff
(100 %id)
AI085363 senescent fibroblast .b 2781 to 3280 505 to 6       500/505
(99 %)
0 diff
(100 %id)
AW005938 anaplastic oligodendroglioma, brain .b 2787 to 3279 493 to 1       493/493
(100 %)
0 diff
(100 %id)
BE765803 nervous_tumor .b 2793 to 3204 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
BE765808 nervous_tumor .b 2793 to 3204 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
BE766377 nervous_tumor .b 2793 to 3204 412 to 1       412/412
(100 %)
1 diff
(99.8 %id)
AI742081 pooled .b 2794 to 3279 513 to 28   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 486/488
(99 %)
0 diff
(100 %id)
BE765469 nervous_tumor .b 2795 to 3204 410 to 1       410/412
(99 %)
3 diff
(99.3 %id)
W89014 liver and spleen .b 2795 to 3280 490 to 1   fully sequenced,   490/490
(100 %)
11 diff
(97.8 %id)
AA491031 germinal center B cell .b 2795 to 3061 1 to 265     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 265/265
(100 %)
2 diff
(99.3 %id)
AW947340 lung_tumor .b 2800 to 3139 1 to 338       338/401
(84 %)
9 diff
(97.8 %id)
AA029347 heart .b 2801 to 2986 1 to 188   fully sequenced, Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 188/188
(100 %)
2 diff
(99.0 %id)
BE715345 head_neck .b 2804 to 3139 1 to 333       333/333
(100 %)
4 diff
(98.8 %id)
AA485814 ovarian tumor, ovary .b 2806 to 3238 1 to 432       432/432
(100 %)
5 diff
(98.9 %id)
BU617152 Bone, Subchondral Bone .b 2813 to 3278 484 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 466/475
(98 %)
0 diff
(100 %id)
BQ002279 Chondrosarcoma, Left Pelvis .b 2816 to 3278 481 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 463/468
(98 %)
3 diff
(99.4 %id)
BE673136 Prostate .b 2834 to 3279 446 to 1       446/446
(100 %)
0 diff
(100 %id)
AI141533 heart .b 2843 to 3278 448 to 13   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 436/445
(97 %)
6 diff
(98.7 %id)
AI074037 senescent fibroblast .b 2847 to 3280 439 to 6       434/439
(98 %)
0 diff
(100 %id)
AI200517 lung .b 2847 to 3280 435 to 2       434/435
(99 %)
0 diff
(100 %id)
AW512486 lymph node, lymphoma, follicular mixed small and largecell .b 2847 to 3289 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AA708652 pineal gland .b 2850 to 3278 428 to 1       428/428
(100 %)
2 diff
(99.6 %id)
AA595375 Prostate, prostate tumor .b 2851 to 3280 433 to 5       429/433
(99 %)
0 diff
(100 %id)
AI085664 anaplastic oligodendroglioma, brain .b 2854 to 3280 430 to 4       427/430
(99 %)
0 diff
(100 %id)
AW947117 lung_tumor .b 2859 to 3152 313 to 20     Submitted on the opposite strand 294/318
(92 %)
0 diff
(100 %id)
AI076266 liver and spleen .b 2866 to 3279 414 to 1       414/414
(100 %)
0 diff
(100 %id)
BF445489 Prostate .b 2866 to 3280 422 to 8       415/422
(98 %)
0 diff
(100 %id)
AA716532 heart .b 2871 to 3099 228 to 1       228/228
(100 %)
2 diff
(99.2 %id)
N54381 liver and spleen .b 2872 to 3274 405 to 1   fully sequenced,   405/405
(100 %)
4 diff
(99.1 %id)
EH613313 Prostate .b 2879 to 3226 1 to 348       348/348
(100 %)
0 diff
(100 %id)
AI159908 heart .b 2881 to 3280 404 to 5       400/404
(99 %)
0 diff
(100 %id)
AI033571 liver and spleen .b 2882 to 3278 397 to 1       397/397
(100 %)
1 diff
(99.8 %id)
AI862782 lymph node, lymphoma, follicular mixed small and largecell .b 2884 to 3278 410 to 16   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 395/395
(100 %)
1 diff
(99.8 %id)
BG986445 head_neck .b 2888 to 3123 16 to 251       236/262
(90 %)
7 diff
(97.4 %id)
BG986546 head_neck .b 2888 to 3117 16 to 245       230/245
(93 %)
6 diff
(97.6 %id)
N53225 liver and spleen .b 2890 to 3282 402 to 9       394/426
(92 %)
0 diff
(100 %id)
AI479732 anaplastic oligodendroglioma, brain .b 2894 to 3280 393 to 7       387/393
(98 %)
0 diff
(100 %id)
AI078216 liver and spleen .b 2896 to 3278 383 to 1       383/383
(100 %)
0 diff
(100 %id)
AI313136 lung .b 2896 to 3280 386 to 2       385/386
(99 %)
0 diff
(100 %id)
AI587008 adenocarcinoma, Pancreas .b 2900 to 3280 386 to 6       381/386
(98 %)
0 diff
(100 %id)
BM887847 eye .b 2903 to 3117 1 to 215       215/215
(100 %)
1 diff
(99.6 %id)
AI802315   .b 2904 to 3285 389 to 8       382/389
(98 %)
0 diff
(100 %id)
AI379055 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2908 to 3280 374 to 2       373/374
(99 %)
0 diff
(100 %id)
BE826315 lung_normal .b 2911 to 3200 304 to 15       290/304
(95 %)
0 diff
(100 %id)
AI198137 anaplastic oligodendroglioma, brain .b 2911 to 3278 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AA573285 colon .b 2912 to 3278 382 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 366/366
(100 %)
5 diff
(98.7 %id)
AW009746 colon .b 2912 to 3278 383 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 367/367
(100 %)
15 diff
(96.0 %id)
AA463860.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2917 to 3278 363 to 1     also hits gene FBXO25 363/363
(100 %)
1 diff
(99.8 %id)
BX487518   .b 2918 to 3284 410 to 43     Submitted on the opposite strand 368/410
(89 %)
0 diff
(100 %id)
AA972538 colon, colon tumor .b 2918 to 3278 398 to 38   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 361/361
(100 %)
2 diff
(99.5 %id)
AI187307   .b 2929 to 3280 353 to 2       352/353
(99 %)
0 diff
(100 %id)
BE769729 prostate_tumor .b 2930 to 3215 287 to 1       287/287
(100 %)
5 diff
(98.3 %id)
AA004522 liver and spleen .b 2931 to 3280 350 to 1       350/357
(98 %)
6 diff
(98.4 %id)
AA947225 adenocarcinoma, colon .b 2932 to 3285 354 to 1       354/354
(100 %)
1 diff
(99.8 %id)
AW006179 anaplastic oligodendroglioma, brain .b 2932 to 3278 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
AI001037 breast .b 2935 to 3278 343 to 1       343/343
(100 %)
1 diff
(99.8 %id)
AW189248 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2942 to 3278 337 to 1       337/337
(100 %)
2 diff
(99.5 %id)
AI636516 pooled germ cell tumors .b 2946 to 3281 336 to 1       336/340
(98 %)
0 diff
(100 %id)
R05491 liver and spleen .b 2948 to 3270 332 to 9       324/332
(97 %)
0 diff
(100 %id)
AI499847 anaplastic oligodendroglioma, brain .b 2951 to 3284 342 to 9       334/342
(97 %)
0 diff
(100 %id)
AA570124 colon .b 2953 to 3278 324 to 1       324/324
(100 %)
4 diff
(98.8 %id)
AA594004 colon, colon tumor .b 2953 to 3280 331 to 5       327/331
(98 %)
0 diff
(100 %id)
AW614195 Kidney .b 2955 to 3280 332 to 7       326/332
(98 %)
0 diff
(100 %id)
AA029348 heart .b 2956 to 3278 345 to 22   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 324/324
(100 %)
2 diff
(99.4 %id)
AI521855 Kidney .b 2961 to 3280 320 to 1       320/320
(100 %)
0 diff
(100 %id)
R10594 liver and spleen .b 2965 to 3284 337 to 4   fully sequenced,   334/337
(99 %)
20 diff
(94.1 %id)
BM887853 eye .b 2968 to 3280 1 to 313       313/314
(99 %)
3 diff
(99.1 %id)
AW474100 lymph node, lymphoma, follicular mixed small and largecell .b 2969 to 3289 321 to 1   tiling clone,   321/330
(97 %)
6 diff
(98.2 %id)
AI090754 heart .b 2993 to 3280 290 to 3       288/290
(99 %)
0 diff
(100 %id)
AI393026 B-cell, chronic lymphotic leukemia .b 2998 to 3277 310 to 31   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 280/281
(99 %)
0 diff
(100 %id)
AI268015 carcinoid, lung .b 3000 to 3280 282 to 2       281/282
(99 %)
0 diff
(100 %id)
H70466 liver and spleen .b 3001 to 3278 286 to 1   fully sequenced,   286/286
(100 %)
6 diff
(98.0 %id)
AA293703 ovarian tumor, ovary .b 3002 to 3281 300 to 21   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 280/280
(100 %)
0 diff
(100 %id)
AW050949 colon, colonic mucosa from 3 patients with Crohn'sdisease .b 3002 to 3280 282 to 4       279/282
(98 %)
0 diff
(100 %id)
AA877645 colon, colon tumor RER+ .b 3015 to 3278 263 to 1       263/263
(100 %)
1 diff
(99.7 %id)
BE697719 colon .b 3016 to 3206 192 to 1       192/205
(93 %)
11 diff
(94.7 %id)
BE697735 colon .b 3016 to 3206 190 to 1       190/203
(93 %)
7 diff
(96.6 %id)
AI804335 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3019 to 3281 286 to 24   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 263/263
(100 %)
4 diff
(98.5 %id)
AA250991 germinal center B cell .b 3027 to 3286 259 to 1   fully sequenced,   259/259
(100 %)
6 diff
(97.7 %id)
AA991156 breast .b 3039 to 3278 239 to 1       239/239
(100 %)
6 diff
(97.5 %id)
AI218871 pooled .b 3053 to 3278 226 to 1       226/226
(100 %)
1 diff
(99.6 %id)
AI093791 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3080 to 3278 199 to 1       199/199
(100 %)
0 diff
(100 %id)
AA490855 germinal center B cell .b 3090 to 3278 208 to 20   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 189/189
(100 %)
0 diff
(100 %id)
EB362699 eye, lens .b 3101 to 3284 315 to 132       184/315
(58 %)
0 diff
(100 %id)
DA458464 tongue, tumor tissue .c 1 to 529 2 to 530   tiling clone, capped   529/529
(100 %)
3 diff
(99.5 %id)
DA854952 placenta .c 2 to 588 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA501404 brain .c 19 to 529 2 to 512   capped   511/511
(100 %)
3 diff
(99.5 %id)
DA778588 brain .c 33 to 608 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA796904 brain .c 33 to 583 2 to 551   capped   550/550
(100 %)
5 diff
(99.1 %id)
DA769778 brain .c 36 to 607 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
DB210269 trachea .c 40 to 598 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
NM_003449.3   .c 48 to 3533 1 to 3486 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3486/3486
(100 %)
0 diff
(100 %id)
BP314321 mammary gland .c 58 to 642 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DB233303 trachea .c 59 to 566 2 to 510   capped   509/509
(100 %)
4 diff
(99.3 %id)
DA843007 placenta .c 60 to 636 2 to 579   capped   578/578
(100 %)
5 diff
(99.2 %id)
DA864162 placenta .c 60 to 635 2 to 577   capped   576/576
(100 %)
4 diff
(99.4 %id)
DA437045 tongue, tumor tissue .c 62 to 636 2 to 577   capped   576/576
(100 %)
4 diff
(99.4 %id)
DA511411 brain .c 62 to 621 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DB194555 trachea .c 62 to 612 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB292761   .c 64 to 763 2 to 701   capped   700/702
(99 %)
10 diff
(98.6 %id)
BF027359 melanotic melanoma, skin .c 73 to 896 1 to 817       819/902
(90 %)
45 diff
(95.1 %id)
BC024039 Skin, melanotic melanoma. .c 76 to 3533 1 to 3458 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3458/3458
(100 %)
0 diff
(100 %id)
BE729617 melanotic melanoma, skin .c 96 to 739 1 to 655       655/664
(98 %)
18 diff
(97.3 %id)
BE730044 melanotic melanoma, skin .c 97 to 898 1 to 798       798/939
(84 %)
45 diff
(95.3 %id)
TI_1948137696   .c 486 to 1230 117 to 864       748/1363
(54 %)
32 diff
(97.7 %id)
TI_1948137697   .c 486 to 1402 115 to 1037       923/1347
(68 %)
27 diff
(98.0 %id)
DA447564 tongue, tumor tissue .c 487 to 1048 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
CV030482 mixed .c 495 to 1117 1 to 623       623/623
(100 %)
0 diff
(100 %id)
CN276781 embryonic stem cells, cell lines H1, H7, andH9 .c 583 to 1283 1 to 701       701/701
(100 %)
2 diff
(99.8 %id)
BU558132 adenocarcinoma, cell line, breast .c 594 to 1028 81 to 520       440/1214
(36 %)
15 diff
(98.8 %id)
BE549116 cervical carcinoma cell line, cervix .c 627 to 1249 12 to 648       610/941
(64 %)
37 diff
(96.1 %id)
BP242766 Liver .c 729 to 1303 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
AA811701 germinal center B cell .c 770 to 928 160 to 1       160/160
(100 %)
1 diff
(99.4 %id)
BP205422 coronary artery .c 861 to 1441 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA518227 brain .c 872 to 1420 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB194690 trachea .c 940 to 1446 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
BQ055911 lymph, lymphoma, cell line .c 1011 to 1666 1 to 660       660/1108
(59 %)
10 diff
(99.1 %id)
CB112900 Liver .c 1056 to 1554 1 to 499       499/499
(100 %)
0 diff
(100 %id)
DA297313 hippocampus .c 1070 to 1375 2 to 307   capped   306/306
(100 %)
0 diff
(100 %id)
BF772870 epid_tumor .c 1093 to 1531 1 to 439       439/439
(100 %)
3 diff
(99.4 %id)
BQ354886 head_neck .c 1259 to 1641 1 to 383       383/383
(100 %)
10 diff
(97.4 %id)
CN276782 embryonic stem cells, DMSO-treated H9 cellline .c 1270 to 1732 1 to 464       464/464
(100 %)
2 diff
(99.6 %id)
BG341123 B-cells, primary B-cells from tonsils (cell line) .c 1273 to 1762 1 to 494       494/941
(52 %)
14 diff
(98.6 %id)
TI_1948137698   .c 1281 to 2113 964 to 127       838/1187
(70 %)
9 diff
(99.3 %id)
BM835372 stomach .c 1298 to 1833 1 to 537       537/537
(100 %)
2 diff
(99.7 %id)
BE242943 leukopheresis .c 1327 to 1512 1 to 186       186/186
(100 %)
8 diff
(95.7 %id)
BE245252 leukopheresis .c 1327 to 1668 1 to 343       343/343
(100 %)
4 diff
(98.9 %id)
BG900574 cartilage .c 1387 to 1646 47 to 306       260/316
(82 %)
4 diff
(98.8 %id)
CD617104   .c 1399 to 1663 1 to 265       265/269
(98 %)
1 diff
(99.7 %id)
CD617105   .c 1399 to 1662 522 to 259       264/270
(97 %)
0 diff
(100 %id)
BX477240   .c 1422 to 2021 1 to 600       600/600
(100 %)
8 diff
(98.7 %id)
TI_1948137699   .c 1428 to 2113 817 to 132       686/1425
(48 %)
0 diff
(100 %id)
BX487358   .c 1487 to 1680 1 to 194       194/194
(100 %)
2 diff
(99.0 %id)
DA505635 brain .c 1495 to 2068 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BE900982 choriocarcinoma, placenta .c 1518 to 2242 1 to 720       720/729
(98 %)
15 diff
(98.0 %id)
BQ422132 embryonal carcinoma, cell line, testis .c 1536 to 2412 1 to 884       884/884
(100 %)
21 diff
(97.7 %id)
BF853291 lung_normal .c 1569 to 2098 31 to 559       529/559
(94 %)
6 diff
(99.0 %id)
BP294459 Liver .c 1599 to 2196 1 to 598       598/598
(100 %)
0 diff
(100 %id)
CB215178 normal endometrium, late proliferativephase, cycle day 13, uterus .c 1611 to 1673 1 to 63       63/63
(100 %)
1 diff
(98.5 %id)
BF914446 uterus_tumor .c 1624 to 1950 95 to 421       327/421
(77 %)
6 diff
(98.6 %id)
TI_57228170   .c 1626 to 2417 53 to 839       787/788
(99 %)
13 diff
(98.4 %id)
BI868590 adenocarcinoma, cell line, Liver .c 1627 to 2417 1 to 786       786/787
(99 %)
13 diff
(98.4 %id)
BG398526 B-cells, primary B-cells from tonsils (cell line) .c 1650 to 2482 1 to 831       831/889
(93 %)
15 diff
(98.4 %id)
BG340447 B-cells, primary B-cells from tonsils (cell line) .c 1650 to 2172 1 to 536       536/536
(100 %)
12 diff
(97.8 %id)
BF976170 B-cells, primary B-cells from tonsils (cell line) .c 1670 to 2391 1 to 733       733/961
(76 %)
40 diff
(95.9 %id)
BQ669195 epidermoid carcinoma, cell line, salivary gland .c 1683 to 2502 1 to 827       827/856
(96 %)
13 diff
(98.5 %id)
BU158153 epidermoid carcinoma, cell line, salivary gland .c 1683 to 2365 1 to 688       688/894
(76 %)
31 diff
(96.6 %id)
BQ712113 Spleen .c 1683 to 2543 1 to 862       862/863
(99 %)
11 diff
(98.8 %id)
BQ882190 Spleen .c 1683 to 2520 1 to 846       846/877
(96 %)
11 diff
(98.8 %id)
AA312191   .c 1687 to 1979 1 to 294       294/294
(100 %)
2 diff
(99.4 %id)
BG329609 eye, retinoblastoma .c 1698 to 2484 1 to 807       807/969
(83 %)
60 diff
(93.9 %id)
BG329688 eye, retinoblastoma .c 1698 to 2522 1 to 837       837/917
(91 %)
34 diff
(96.3 %id)
BQ055162 lymph, lymphoma, cell line .c 1700 to 2651 1 to 961       961/1025
(93 %)
11 diff
(99.0 %id)
BG468925 adenocarcinoma cell line, colon .c 1701 to 2403 1 to 701       701/703
(99 %)
11 diff
(98.5 %id)
BQ308789 breast .c 1706 to 2302 14 to 609       596/609
(97 %)
6 diff
(99.1 %id)
BG396145 eye, retinoblastoma .c 1706 to 2474 1 to 754       754/989
(76 %)
28 diff
(97.2 %id)
BG257776 embryonal carcinoma, cell line, testis .c 1710 to 2368 1 to 660       660/660
(100 %)
1 diff
(99.9 %id)
BP291816 lung .c 1714 to 2295 1 to 582       582/584
(99 %)
4 diff
(99.4 %id)
BM008729 adenocarcinoma, Pancreas .c 1715 to 2573 1 to 861       861/862
(99 %)
14 diff
(98.4 %id)
TI_59386441   .c 1716 to 2573 95 to 954       860/861
(99 %)
14 diff
(98.4 %id)
BY995984   .c 1731 to 2363 1 to 632       632/632
(100 %)
7 diff
(98.9 %id)
BE736181 adenocarcinoma, Pancreas .c 1734 to 2459 1 to 725       725/851
(85 %)
6 diff
(99.3 %id)
BE793008 lung, small cell carcinoma .c 1749 to 2561 1 to 814       814/906
(89 %)
18 diff
(98.1 %id)
BE887797 leiomyosarcoma, uterus .c 1779 to 2518 1 to 734       734/1029
(71 %)
20 diff
(98.1 %id)
BP339720 Spleen .c 1791 to 2369 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
AL702483 human skeletal muscle .c 1809 to 2231 1 to 423       423/423
(100 %)
0 diff
(100 %id)
BF855435 prostate_normal .c 1823 to 2016 199 to 6     Submitted on the opposite strand 194/199
(97 %)
0 diff
(100 %id)
BQ437965 leiomyosarcoma, uterus .c 1837 to 2660 12 to 841       830/856
(96 %)
13 diff
(98.5 %id)
AA326405 brain, cerebellum .c 1839 to 2155 1 to 319       319/319
(100 %)
2 diff
(99.4 %id)
BF934204 nervous_tumor .c 1844 to 2138 1 to 294       294/294
(100 %)
5 diff
(98.3 %id)
BM479784 eye, retinoblastoma .c 1861 to 2783 1 to 933       933/1052
(88 %)
17 diff
(98.4 %id)
BG431920 Kidney .c 1866 to 2582 1 to 706       706/808
(87 %)
39 diff
(95.2 %id)
TI_57233177   .c 1873 to 2700 29 to 860       832/860
(96 %)
6 diff
(99.4 %id)
BI906732 leukocyte .c 1879 to 2700 1 to 826       826/826
(100 %)
9 diff
(99.0 %id)
CN276784 embryonic stem cells, DMSO-treated H9 cellline .c 1944 to 2340 11 to 407       397/407
(97 %)
6 diff
(98.6 %id)
AA193667.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2015 to 2097 1 to 83     also hits gene COL4A6 83/88
(94 %)
1 diff
(98.9 %id)
CF122476 CNCAP(3)T-225 cell line, Prostate .c 2028 to 2647 8 to 625       618/625
(98 %)
6 diff
(99.1 %id)
CF122481 CNCAP(3)T-225 cell line, Prostate .c 2028 to 2693 8 to 672       665/672
(98 %)
6 diff
(99.2 %id)
TI_154182060   .c 2028 to 2863 76 to 900       825/827
(99 %)
19 diff
(97.8 %id)
TI_154182066   .c 2028 to 2788 76 to 833       758/767
(98 %)
6 diff
(99.3 %id)
BI254890 cervical carcinoma cell line, cervix .c 2047 to 2753 8 to 714       707/717
(98 %)
3 diff
(99.6 %id)
BQ652913 hepatocellular carcinoma, cell line, Liver .c 2143 to 2944 18 to 826       809/978
(82 %)
18 diff
(98.2 %id)
BQ651575 hepatocellular carcinoma, cell line, Liver .c 2145 to 2986 1 to 851       851/920
(92 %)
11 diff
(98.9 %id)
BP429716   .c 2161 to 2510 1 to 350       350/350
(100 %)
4 diff
(98.9 %id)
CU456970 epidermis .c 2199 to 2521 342 to 20     Submitted on the opposite strand 323/342
(94 %)
0 diff
(100 %id)
BG435889 placenta .c 2209 to 2823 1 to 618       618/618
(100 %)
16 diff
(97.5 %id)
AV659362 corresponding non cancerous liver tissue .c 2266 to 2631 1 to 366     Submitted on the opposite strand 366/366
(100 %)
0 diff
(100 %id)
BE871477 adenocarcinoma, colon .c 2275 to 2965 1 to 699       699/961
(72 %)
43 diff
(95.6 %id)
BU538658 adenocarcinoma, cell line, breast .c 2307 to 3140 1 to 834       834/835
(99 %)
2 diff
(99.8 %id)
BU539205 adenocarcinoma, cell line, breast .c 2307 to 2931 1 to 629       629/1067
(58 %)
9 diff
(99.2 %id)
BU857551 adenocarcinoma, cell line, breast .c 2307 to 3177 1 to 873       873/874
(99 %)
4 diff
(99.6 %id)
BU943951 adenocarcinoma, cell line, breast .c 2307 to 3130 1 to 838       838/954
(87 %)
19 diff
(98.1 %id)
BU944679 adenocarcinoma, cell line, breast .c 2307 to 3157 1 to 854       854/857
(99 %)
5 diff
(99.5 %id)
BG251779 adenocarcinoma, cell line, Liver .c 2342 to 3080 1 to 729       729/949
(76 %)
18 diff
(98.2 %id)
BF344217 brain, glioblastoma with EGFR amplification .c 2362 to 3054 28 to 732       705/1140
(61 %)
22 diff
(98.1 %id)
AA399169 ovarian tumor, ovary .c 2379 to 2803 1 to 425       425/425
(100 %)
0 diff
(100 %id)
BM782555 stomach .c 2437 to 3026 1 to 589       589/589
(100 %)
1 diff
(99.9 %id)
BF093808 uterus .c 2444 to 2946 1 to 500       500/516
(96 %)
7 diff
(98.7 %id)
BE242831 leukopheresis .c 2488 to 2793 305 to 1       305/305
(100 %)
2 diff
(99.4 %id)
AA436776   .c 2502 to 3039 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
DB382702   .c 3006 to 3536 530 to 1       530/545
(97 %)
12 diff
(97.8 %id)
DB313450 tongue, tumor tissue .c 3066 to 3533 468 to 1       468/468
(100 %)
0 diff
(100 %id)
DB293088   .d 1 to 776 3 to 779   tiling clone, capped   778/778
(100 %)
9 diff
(98.9 %id)
DB383027   .d 2947 to 3477 528 to 1   tiling clone,   528/551
(95 %)
11 diff
(98.1 %id)
CN286051 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 1 to 701 1 to 701   tiling clone,   701/701
(100 %)
0 diff
(100 %id)
AK096996 small intestine .e 403 to 3514 1 to 3112 exact tiling clone, available from FLJ,   3112/3112
(100 %)
2 diff
(100.0 %id)
DA923668 small intestine .e 404 to 983 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DB332044 small intestine .e 3082 to 3514 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AW869014 stomach_normal .f-u 3 to 224 225 to 2   tiling clone,   224/225
(99 %)
0 diff
(100 %id)
AK122859 thalamus .f-u 26 to 3287 1 to 3262 S7P tiling clone, available from FLJ,   3262/3262
(100 %)
5 diff
(99.9 %id)
DA399650 thalamus .f-u 27 to 573 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA391277 thalamus .f-u 693 to 1149 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
DB312076 thalamus .f-u 2925 to 3287 363 to 1       363/363
(100 %)
0 diff
(100 %id)
DB244898 uterus, tumor tissue .g 1 to 944 32 to 560 S4P A5S L7T R8G S9K ... tiling clone, capped Suspected internal deletion 531/559
(94 %)
11 diff
(98.1 %id)
CT004435 T-Lymphocytes .h 1 to 734 1 to 735 M138X E139G K140E A141G A142R ... tiling clone,   735/735
(100 %)
3 diff
(99.6 %id)
DA303812 hippocampus .i 1 to 549 6 to 554 exact tiling clone, capped   553/553
(100 %)
2 diff
(99.7 %id)
DA413697 thalamus .j 1 to 540 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DA318352 hippocampus .j 339 to 928 2 to 592   tiling clone, capped   591/591
(100 %)
2 diff
(99.7 %id)
DA677936   .j 542 to 1085 2 to 545   capped   544/568
(95 %)
3 diff
(99.5 %id)
DA230539 brain .j 772 to 1401 2 to 633   tiling clone, capped   632/632
(100 %)
7 diff
(98.9 %id)
DA198184 brain .j 1187 to 1672 2 to 487   capped   486/486
(100 %)
0 diff
(100 %id)
DA870238 Prostate .j 1221 to 1751 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA234833 brain .j 1229 to 1823 2 to 596   tiling clone, capped   595/595
(100 %)
0 diff
(100 %id)
DA348464 substantia nigra .j 1230 to 1739 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
DA992030 synovial membrane tissue from rheumatioidarthritis .j 1230 to 1643 2 to 415   capped   414/414
(100 %)
1 diff
(99.8 %id)
BP246829 Kidney .j 1236 to 1838 1 to 603 L101S tiling clone,   603/603
(100 %)
2 diff
(99.7 %id)
BX333087 Neuroblastoma Cot 25-normalized .j 1245 to 1520 1 to 275       275/275
(100 %)
3 diff
(99.0 %id)
BP314752 mammary gland .j 1254 to 1835 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA777041 brain .j 1258 to 1825 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA417379 thalamus .j 1259 to 1796 8 to 545   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA909162   .j 1259 to 1808 2 to 551   capped   550/551
(99 %)
2 diff
(99.7 %id)
DB100283 testis .j 1259 to 1785 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA109973 cerebellum .k 1 to 549 2 to 551 V27A G33X E35G L36A G37R ... tiling clone, capped   550/550
(100 %)
2 diff
(99.7 %id)
DB077274 testis .k 12 to 575 2 to 565 exact tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA173507 amygdala .l 1 to 559 2 to 561 L70P Y71V K72Q S73E A74C ... tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DA234548 brain .m 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
5 diff
(99.2 %id)
DA249952 brain .m 18 to 598 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA433553 tongue, tumor tissue .m 38 to 687 2 to 650   capped   649/842
(77 %)
4 diff
(99.6 %id)
DA445104 tongue, tumor tissue .m 38 to 594 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
DA595403 lung .m 68 to 655 2 to 590   capped   589/589
(100 %)
6 diff
(99.0 %id)
DA496523 brain .m 70 to 560 2 to 492   capped   491/491
(100 %)
1 diff
(99.8 %id)
DB153543 thymus .m 70 to 581 2 to 513   capped   512/512
(100 %)
4 diff
(99.3 %id)
DA454430 tongue, tumor tissue .m 71 to 666 2 to 598   capped   597/597
(100 %)
4 diff
(99.4 %id)
DA636906 Liver .m 71 to 851 2 to 788   capped   787/787
(100 %)
17 diff
(97.9 %id)
DA807958 brain .m 71 to 612 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB086641 testis .m 71 to 565 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
DB147716 thymus .m 71 to 645 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA721596   .m 73 to 638 2 to 567   capped   566/566
(100 %)
5 diff
(99.2 %id)
BP288540 lung .m 75 to 658 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
DA443252 tongue, tumor tissue .m 76 to 630 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB218721 trachea .m 76 to 392 2 to 318   capped   317/317
(100 %)
1 diff
(99.7 %id)
DA278224 corpus callosum .m 87 to 641 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DA861004 placenta .m 89 to 594 2 to 507   capped   506/506
(100 %)
5 diff
(99.1 %id)
DA092342 cerebellum .m 90 to 627 2 to 545   capped   544/544
(100 %)
11 diff
(98.0 %id)
DA236651 brain .m 90 to 672 2 to 582   capped   581/581
(100 %)
9 diff
(98.5 %id)
BP288664 lung .m 90 to 672 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
DA439241 tongue, tumor tissue .m 94 to 642 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DA457287 tongue, tumor tissue .m 94 to 654 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA741528   .m 94 to 638 2 to 546   capped   545/545
(100 %)
4 diff
(99.3 %id)
DB214736 trachea .m 94 to 401 2 to 309   capped   308/308
(100 %)
0 diff
(100 %id)
DB225625 trachea .m 94 to 652 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DB293214   .m 94 to 794 2 to 705   capped   704/704
(100 %)
8 diff
(98.9 %id)
DA184829 amygdala .m 99 to 388 2 to 291   capped   290/290
(100 %)
3 diff
(99.0 %id)
DA235211 brain .m 102 to 684 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA453069 tongue, tumor tissue .m 102 to 664 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA853162 placenta .m 102 to 669 2 to 570   capped   569/569
(100 %)
5 diff
(99.2 %id)
DA855662 placenta .m 102 to 654 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DB264510 uterus .m 102 to 679 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
DA710676   .m 103 to 658 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DB002878 breast, tumor tissue .m 103 to 666 2 to 566   capped   565/565
(100 %)
4 diff
(99.3 %id)
DB154948 thymus .m 103 to 689 2 to 588   capped   587/587
(100 %)
3 diff
(99.5 %id)
CB988131 Human Placenta, placenta .m 105 to 876 28 to 807       780/810
(96 %)
17 diff
(98.0 %id)
CB990217 Human Placenta, placenta .m 105 to 856 28 to 785       758/795
(95 %)
13 diff
(98.4 %id)
DB088779 testis .m 109 to 650 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA415160 thalamus .m 110 to 653 2 to 545   capped   544/544
(100 %)
3 diff
(99.5 %id)
DA461480 tongue, tumor tissue .m 110 to 647 2 to 540   capped   539/539
(100 %)
3 diff
(99.5 %id)
DA814850   .m 110 to 670 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA943901 Spleen .m 110 to 681 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA999120 breast, tumor tissue .m 110 to 666 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB068339 testis .m 110 to 662 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
DB084293 testis .m 110 to 676 2 to 571   capped   570/570
(100 %)
6 diff
(99.0 %id)
DB159048 thymus .m 110 to 663 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA692516   .m 123 to 674 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
BE894942 melanotic melanoma, skin .m 124 to 841 13 to 733       721/739
(97 %)
56 diff
(92.5 %id)
BU502349 mixed (pool of 40 RNAs) .m 126 to 931 1 to 808   tiling clone,   808/808
(100 %)
11 diff
(98.7 %id)
DB074534 testis .m 128 to 673 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DA050108   .m 129 to 679 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA460044 tongue, tumor tissue .m 129 to 690 2 to 564   capped   563/563
(100 %)
4 diff
(99.3 %id)
DA589421 lung .m 129 to 590 2 to 463   capped   462/462
(100 %)
3 diff
(99.4 %id)
DA739697   .m 129 to 639 2 to 512   capped   511/511
(100 %)
3 diff
(99.5 %id)
DA865021 placenta .m 129 to 679 2 to 553   capped   552/552
(100 %)
4 diff
(99.3 %id)
DA879369 Prostate .m 129 to 695 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
BM832515 stomach .m 129 to 634 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
DA998652 breast, tumor tissue .m 129 to 695 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB007276 cervix, tumor tissue .m 129 to 698 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB019727 testis .m 129 to 702 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB068166 testis .m 129 to 670 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DB075030 testis .m 129 to 678 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DB081349 testis .m 129 to 641 2 to 515   capped   514/514
(100 %)
2 diff
(99.7 %id)
DB150461 thymus .m 129 to 647 2 to 520   capped   519/519
(100 %)
5 diff
(99.1 %id)
DB221327 trachea .m 129 to 667 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DB232561 trachea .m 129 to 677 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB234126 trachea .m 129 to 700 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB263053 uterus .m 129 to 703 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA027656   .m 130 to 691 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA232967 brain .m 130 to 696 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA411021 thalamus .m 130 to 687 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA438167 tongue, tumor tissue .m 130 to 707 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA438810 tongue, tumor tissue .m 130 to 715 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA459819 tongue, tumor tissue .m 130 to 683 2 to 556   capped   555/555
(100 %)
5 diff
(99.1 %id)
DA802860 brain .m 130 to 693 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
DA991050 synovial membrane tissue from rheumatioidarthritis .m 130 to 671 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB086900 testis .m 130 to 687 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DB228881 trachea .m 130 to 718 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DB237339 trachea .m 130 to 675 2 to 548   capped   547/548
(99 %)
2 diff
(99.7 %id)
AK314782 brain .m 131 to 2295 1 to 2165 exact tiling clone,   2165/2165
(100 %)
6 diff
(99.8 %id)
DA460925 tongue, tumor tissue .m 131 to 695 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BP250160 hippocampus .m 131 to 764 1 to 634       634/634
(100 %)
20 diff
(96.9 %id)
BP250184 hippocampus .m 131 to 712 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP285358 lung .m 131 to 710 1 to 581       580/581
(99 %)
14 diff
(97.6 %id)
BP287976 lung .m 131 to 712 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA239476 brain .m 132 to 726 2 to 596   capped   595/595
(100 %)
3 diff
(99.5 %id)
DA414893 thalamus .m 132 to 701 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA436789 tongue, tumor tissue .m 132 to 707 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA440320 tongue, tumor tissue .m 132 to 694 2 to 565   capped   564/564
(100 %)
4 diff
(99.3 %id)
DA440567 tongue, tumor tissue .m 132 to 720 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DA461099 tongue, tumor tissue .m 132 to 697 2 to 569   capped   568/568
(100 %)
6 diff
(99.0 %id)
DA629517 Kidney .m 132 to 709 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA720745   .m 132 to 695 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA723755   .m 132 to 676 2 to 546   capped   545/545
(100 %)
5 diff
(99.1 %id)
DA724541   .m 132 to 601 2 to 471   capped   470/470
(100 %)
4 diff
(99.2 %id)
DA960672 Spleen .m 132 to 691 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA992901 synovial membrane tissue from rheumatioidarthritis .m 132 to 702 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA994818 synovial membrane tissue from rheumatioidarthritis .m 132 to 682 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA995508 synovial membrane tissue from rheumatioidarthritis .m 132 to 699 2 to 570   capped   569/569
(100 %)
4 diff
(99.3 %id)
DB071858 testis .m 132 to 686 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB090451 testis .m 132 to 699 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB130959 thymus .m 132 to 692 2 to 562   capped   561/561
(100 %)
4 diff
(99.3 %id)
DB160971 thymus .m 132 to 703 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
DB164988 thymus .m 132 to 707 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DB219817 trachea .m 132 to 676 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DB222001 trachea .m 132 to 688 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB223213 trachea .m 132 to 690 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DB230246 trachea .m 132 to 705 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB241536 trachea .m 132 to 708 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB293351   .m 132 to 828 2 to 697   capped   696/696
(100 %)
4 diff
(99.5 %id)
CN276786 embryonic stem cells, cell lines H1, H7, andH9 .m 136 to 828 1 to 693   tiling clone,   693/693
(100 %)
5 diff
(99.3 %id)
AL037772 brain .m 140 to 709 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
BG385446 adenocarcinoma cell line, colon .m 142 to 732 1 to 590       590/591
(99 %)
3 diff
(99.5 %id)
BM560081 brain, medulla .m 147 to 1095 18 to 972 Q167P V179K K180E E181P A182S ... tiling clone,   955/1098
(86 %)
31 diff
(97.2 %id)
CN276783 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .m 158 to 821 1 to 664       664/664
(100 %)
1 diff
(99.9 %id)
BU192797 eye, retinoblastoma .m 159 to 986 11 to 847       837/890
(94 %)
24 diff
(97.4 %id)
DN998050 breast cancer, Mammary gland (cancer tissue) .m 205 to 924 1 to 718       718/718
(100 %)
8 diff
(98.9 %id)
CN276780 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .m 209 to 852 1 to 644       644/644
(100 %)
0 diff
(100 %id)
DA991981 synovial membrane tissue from rheumatioidarthritis .m 266 to 814 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
AW367905 head_neck .m 2701 to 3196 514 to 23   tiling clone,   492/514
(95 %)
0 diff
(100 %id)
BP429041   .m 2721 to 3081 1 to 361       361/361
(100 %)
4 diff
(98.9 %id)
CR736844   .m 2741 to 3238 1 to 498   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
BF238209 B-cells, primary B-cells from tonsils (cell line) .m 2766 to 3391 1 to 632       632/633
(99 %)
21 diff
(96.7 %id)
AA318703 Spleen .m 2849 to 3124 1 to 276       276/276
(100 %)
0 diff
(100 %id)
AA318697 Spleen .m 2851 to 3137 1 to 287       287/287
(100 %)
0 diff
(100 %id)
R92552 liver and spleen .m 2872 to 3306 12 to 453       442/454
(97 %)
14 diff
(97.0 %id)
AA235892 germinal center B cell .m 2894 to 3065 1 to 172       172/172
(100 %)
0 diff
(100 %id)
AW579434 denis_drash .m 2967 to 3302 18 to 352   AAA   335/352
(95 %)
9 diff
(97.5 %id)
BE091442 breast .m 2982 to 3408 1 to 427       427/461
(92 %)
6 diff
(98.7 %id)
BI001278 head_normal .m 2982 to 3429 446 to 3       444/446
(99 %)
0 diff
(100 %id)
BF879250 lung_tumor .m 3064 to 3429 389 to 26   tiling clone, Submitted on the opposite strand 364/398
(91 %)
0 diff
(100 %id)
BF821364 kidney_tumor .m 3068 to 3412 345 to 3     Submitted on the opposite strand 343/345
(99 %)
0 diff
(100 %id)
AI906121 breast .m 3076 to 3361 303 to 18       286/304
(94 %)
0 diff
(100 %id)
C02256   .m 3086 to 3260 1 to 177       177/177
(100 %)
4 diff
(97.8 %id)
DB383288   .m 3138 to 3714 574 to 1       574/574
(100 %)
8 diff
(98.7 %id)
DB321088 Liver .m 3182 to 3714 537 to 1   tiling clone,   537/538
(99 %)
18 diff
(96.7 %id)
AW375886 colon .m 3240 to 3353 114 to 1       114/114
(100 %)
1 diff
(99.2 %id)
DB383152   .m 3276 to 3714 442 to 1       442/444
(99 %)
19 diff
(95.8 %id)
DA771327 brain .n 1 to 463 2 to 465   tiling clone, capped   464/464
(100 %)
1 diff
(99.8 %id)
DA510635 brain .n 16 to 589 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA240306 brain .n 17 to 607 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA418769 thalamus .n 32 to 634 2 to 604   capped   603/603
(100 %)
1 diff
(99.9 %id)
DA858030 placenta .n 60 to 597 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DB282993 uterus .n 60 to 605 2 to 547   capped   546/546
(100 %)
4 diff
(99.3 %id)
BP288429 lung .n 61 to 660 1 to 594       594/594
(100 %)
9 diff
(98.5 %id)
DA719310   .n 62 to 634 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA989915 synovial membrane tissue from rheumatioidarthritis .n 62 to 597 2 to 537   capped   536/536
(100 %)
2 diff
(99.7 %id)
DA758041   .n 72 to 619 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DB293000   .n 177 to 810 2 to 633   tiling clone, capped   632/665
(95 %)
6 diff
(99.1 %id)
DB382936   .n 3102 to 3629 527 to 1   tiling clone,   527/527
(100 %)
18 diff
(96.6 %id)
BE940091 uterus_tumor .o-u 1 to 510 33 to 542   tiling clone,   510/547
(93 %)
34 diff
(93.8 %id)
AA010918 heart .o-u 171 to 600 1 to 433   tiling clone,   433/445
(97 %)
8 diff
(98.3 %id)
T77587 liver and spleen .o-u 257 to 635 9 to 396   tiling clone,   388/396
(97 %)
6 diff
(98.5 %id)
T86391 liver and spleen .o-u 477 to 817 1 to 349   tiling clone, fully sequenced,   349/349
(100 %)
6 diff
(98.3 %id)
AW977035   .o-u 593 to 1135 543 to 1 R17K V32X   Submitted on the opposite strand 543/543
(100 %)
16 diff
(97.1 %id)
BQ005238 Chondrosarcoma, Left Pelvis .o-u 681 to 1136 475 to 19 exact AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 457/457
(100 %)
2 diff
(99.6 %id)
AA011308 heart .o-u 712 to 1137 426 to 1 K25E     426/426
(100 %)
2 diff
(99.6 %id)
AW270655 endometrioid ovarian metastasis, ovary .o-u 739 to 1151 438 to 24   tiling clone,   415/438
(94 %)
0 diff
(100 %id)
BF510244   .o-u 772 to 1136 382 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 365/366
(99 %)
4 diff
(99.0 %id)
T86292 liver and spleen .o-u 787 to 1137 352 to 1   fully sequenced,   352/352
(100 %)
5 diff
(98.6 %id)
T77548 liver and spleen .o-u 795 to 1138 344 to 1   tiling clone,   344/505
(68 %)
9 diff
(98.3 %id)
AI638250 pooled germ cell tumors .o-u 839 to 1136 298 to 1       298/298
(100 %)
4 diff
(98.7 %id)
AI655717 pooled germ cell tumors .o-u 839 to 1136 298 to 1       298/298
(100 %)
0 diff
(100 %id)
AW593913 pooled germ cell tumors .o-u 839 to 1136 298 to 1       298/298
(100 %)
2 diff
(99.4 %id)
AA721194 germinal center B cell .o-u 846 to 1114 269 to 1       269/269
(100 %)
1 diff
(99.7 %id)
DB284737 uterus .p-u 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
CN289656 embryonic stem cells, DMSO-treated H9 cellline .p-u 15 to 294 1 to 280       280/280
(100 %)
2 diff
(99.3 %id)
CN269956 embryonic stem cells, DMSO-treated H9 cellline .p-u 16 to 797 9 to 790 exact tiling clone,   782/790
(98 %)
6 diff
(99.3 %id)
DA126303 cerebellum .q 1 to 599 2 to 600 exact tiling clone, capped   599/599
(100 %)
1 diff
(99.9 %id)
DA246812 brain .q 24 to 601 2 to 579 exact tiling clone, capped   578/578
(100 %)
2 diff
(99.7 %id)
BP287321 lung .r-u 1 to 581 2 to 582 C56X K57Q tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DB082963 testis .r-u 1 to 551 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BP315395 mammary gland .s 1 to 577 6 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DB100295 testis .t 1 to 577 6 to 583 exact tiling clone, capped   582/582
(100 %)
1 diff
(99.9 %id)
DB081006 testis .t 1 to 556 5 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB225854 trachea .t 1 to 558 5 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB090661 testis .u 1 to 564 2 to 566   tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
DA803368 brain .va 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
3 diff
(99.5 %id)
DA993840 synovial membrane tissue from rheumatioidarthritis .vb 1 to 539 2 to 543 exact tiling clone, capped   542/542
(100 %)
4 diff
(99.3 %id)
BM833839 stomach .vb 3 to 504 1 to 502 F31V tiling clone,   502/502
(100 %)
3 diff
(99.5 %id)
AA613466 colon, colon tumor RER+ .vc 1 to 396 396 to 1 exact tiling clone,   396/396
(100 %)
1 diff
(99.8 %id)
BE826083 lung_normal .vd 1 to 187 199 to 12 exact tiling clone,   188/199
(94 %)
1 diff
(99.5 %id)
BM976573 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene TRIM26, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BG990598 head_neck Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
AW814753 stomach Gene TRIM26, variant not shown              
BX118879 ovarian tumor, ovary Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
BC021115 Lymph, Burkitt lymphoma Gene TRIM26, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
DA333339 hippocampus Gene TRIM26, variant not shown       capped      
T96671 liver and spleen Gene TRIM26, variant not shown         Submitted on the opposite strand    
AA506978 breast Gene TRIM26, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI611146 pooled germ cell tumors Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
AI765095 colon, colon tumor, RER+ Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
AI765855 2 pooled tumors (clear cell type), Kidney Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
AI769605 2 pooled tumors (clear cell type), Kidney Gene TRIM26, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI926789 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene TRIM26, variant not shown         This clone was ignored    
BF001890 colon, colon tumor, RER+ Gene TRIM26, variant not shown         This clone was ignored    
BF590951 colon, colon tumor, RER+ Gene TRIM26, variant not shown         Suspected internal deletion, this clone was ignored    
BG762208 melanotic melanoma, high MDR (cell line), skin Gene TRIM26, variant not shown         This clone was ignored    
BI224832 Burkitt lymphoma, lymph Gene TRIM26, variant not shown       available from MGC, Suspected internal deletion, this clone was ignored    
DA942469 Spleen Gene TRIM26, variant not shown       capped Suspected internal deletion, this clone was ignored    
TI_149300523   Gene TRIM26, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB238420 trachea Gene TRIM26, variant not shown       capped      
DB350446 trachea Gene TRIM26, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p-u, .q, .r-u, .s, .t, .u, .va, .vb, .vc, .vd Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI