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Gene TRIM17TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
106 supporting clones for gene TRIM17 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_016102.3   .a 1 to 2085 1 to 2085   RefSeq,   2085/2085
(100 %)
0 diff
(100 %id)
DA271535 caudate nucleus .a 198 to 595 2 to 399   tiling clone, capped   398/398
(100 %)
0 diff
(100 %id)
DA953070 Spleen .a 198 to 755 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
BC033788 Brain, adult medulla .a 237 to 1981 1 to 1745   tiling clone, available from MGC, AAA   1745/1745
(100 %)
0 diff
(100 %id)
BI828196 brain, medulla .a 237 to 1141 1 to 904       904/917
(98 %)
23 diff
(97.5 %id)
TI_57171585   .a 237 to 1141 67 to 970       904/983
(91 %)
35 diff
(96.5 %id)
DB031719 testis .a 251 to 829 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB043052 testis .a 251 to 820 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
AF156271 testis .a 278 to 1981 1 to 1704       1704/1704
(100 %)
0 diff
(100 %id)
BI825961 brain, medulla .a 367 to 1126 1 to 757       757/759
(99 %)
4 diff
(99.5 %id)
DA270450 caudate nucleus .b 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
NM_001024940.2   .b 35 to 2083 1 to 2049 exact RefSeq,   2049/2049
(100 %)
0 diff
(100 %id)
DA944656 Spleen .b 68 to 610 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BI825739 brain, medulla .b 251 to 1059 1 to 808       808/811
(99 %)
9 diff
(98.9 %id)
TI_57170295   .b 253 to 1059 32 to 837       806/840
(95 %)
13 diff
(98.5 %id)
DB457570 testis .b 254 to 718 1 to 465       465/465
(100 %)
2 diff
(99.6 %id)
DB448706 testis .b 257 to 696 1 to 439       439/440
(99 %)
7 diff
(98.5 %id)
DB049242 testis .b 258 to 807 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA297792 hippocampus .b 262 to 812 8 to 559   capped   552/559
(98 %)
3 diff
(99.5 %id)
DB451088 testis .b 265 to 698 1 to 434       434/434
(100 %)
4 diff
(99.1 %id)
DB458832 testis .b 273 to 723 1 to 451       451/451
(100 %)
1 diff
(99.8 %id)
BC023999 testis .b 276 to 1979 9 to 1711 E324R G325A S326V F328S C329A ... tiling clone, available from MGC, AAA   1703/1703
(100 %)
1 diff
(100.0 %id)
BI825903 brain, medulla .b 294 to 1079 1 to 787       787/787
(100 %)
3 diff
(99.7 %id)
TI_57174049   .b 294 to 1079 28 to 814       787/814
(96 %)
8 diff
(99.1 %id)
TI_57173803   .b 373 to 1124 63 to 824       775/826
(93 %)
60 diff
(92.8 %id)
TI_1948132078   .b 377 to 1225 121 to 975       851/1156
(73 %)
29 diff
(97.5 %id)
TI_1948132396   .b 377 to 1067 117 to 805       687/1367
(50 %)
38 diff
(97.3 %id)
TI_1948132397   .b 377 to 1139 122 to 888       765/1194
(64 %)
23 diff
(98.1 %id)
TI_1948132708   .b 377 to 906 121 to 657       533/1454
(36 %)
29 diff
(98.1 %id)
TI_1948132709   .b 377 to 1125 124 to 880       755/1259
(59 %)
23 diff
(98.2 %id)
TI_1948133017   .b 377 to 1042 122 to 793       670/1495
(44 %)
40 diff
(97.4 %id)
TI_1948133018   .b 377 to 1140 119 to 887       767/1210
(63 %)
15 diff
(98.8 %id)
BG723626 testis .b 379 to 1042 137 to 815   available from MGC,   680/817
(83 %)
27 diff
(96.7 %id)
CV030687 mixed .b 384 to 1082 1 to 699       699/702
(99 %)
5 diff
(99.3 %id)
CN363153 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 423 to 773 7 to 359       353/359
(98 %)
6 diff
(98.4 %id)
DA125991 cerebellum .b 506 to 1098 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
TI_1948132079   .b 905 to 1820 1030 to 120       911/1272
(71 %)
21 diff
(98.4 %id)
TI_1948133019   .b 905 to 1820 1036 to 119   tiling clone,   918/1307
(70 %)
26 diff
(98.1 %id)
TI_1948132398   .b 908 to 1820 1040 to 122       919/1368
(67 %)
33 diff
(97.6 %id)
TI_1948132710   .b 1005 to 1820 936 to 119       818/1319
(62 %)
15 diff
(98.9 %id)
TI_1948132711   .b 1160 to 1820 787 to 125       663/1357
(48 %)
18 diff
(98.7 %id)
TI_1948132399   .b 1265 to 1820 681 to 125       557/1391
(40 %)
0 diff
(100 %id)
CR749133   .b 1272 to 1699 36 to 463       428/463
(92 %)
6 diff
(98.8 %id)
TI_1948133020   .b 1412 to 1820 529 to 120       410/1366
(30 %)
0 diff
(100 %id)
BG990444 head_neck .b 1428 to 1941 46 to 558       513/562
(91 %)
14 diff
(97.6 %id)
AA781868   .b 1448 to 1988 541 to 2       540/543
(99 %)
0 diff
(100 %id)
AW152318 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1461 to 2081 613 to 1       613/623
(98 %)
21 diff
(96.7 %id)
DB524327 testis .b 1496 to 1979 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
AW770403 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 1524 to 2083 561 to 2   tiling clone,   560/561
(99 %)
0 diff
(100 %id)
DB523048 testis .b 1528 to 1983 1 to 456     Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
DB544979 hippocampus .b 1572 to 2081 1 to 510     Submitted on the opposite strand 510/510
(100 %)
6 diff
(98.9 %id)
DB514043 testis .b 1592 to 1979 1 to 390     Submitted on the opposite strand 390/390
(100 %)
14 diff
(96.5 %id)
AA909463 pooled .b 1593 to 1986 395 to 1       395/395
(100 %)
2 diff
(99.5 %id)
AA482996 Ewing's sarcoma .b 1602 to 2083 498 to 17       482/498
(96 %)
0 diff
(100 %id)
DB545166 hippocampus .b 1622 to 2081 1 to 460     Submitted on the opposite strand 460/460
(100 %)
1 diff
(99.8 %id)
DB516585 testis .b 1623 to 2080 1 to 458     Submitted on the opposite strand 458/458
(100 %)
0 diff
(100 %id)
DB513846 testis .b 1706 to 2081 1 to 375     Submitted on the opposite strand 375/375
(100 %)
10 diff
(97.4 %id)
AA758672   .b 1895 to 2081 189 to 3       187/189
(98 %)
0 diff
(100 %id)
AK316379 testis .c 1 to 1261 1 to 1264 K306R N307K V309N S310V V311S ... tiling clone,   1261/1264
(99 %)
1 diff
(100.0 %id)
AK308774 amygdala .d 1 to 1730 2 to 1731 exact tiling clone,   1731/1731
(100 %)
0 diff
(100 %id)
BQ073095 leukocyte .d 1616 to 2358 1 to 752   tiling clone,   752/1206
(62 %)
15 diff
(98.8 %id)
AI809990 pooled .d 2280 to 2740 461 to 1   tiling clone,   461/461
(100 %)
0 diff
(100 %id)
DC309740 cerebellum .e 1 to 556 1 to 556   tiling clone,   556/556
(100 %)
0 diff
(100 %id)
NM_001134855.1   .e 1 to 1782 1 to 1782 exact RefSeq,   1782/1782
(100 %)
0 diff
(100 %id)
DC310322 cerebellum .e 36 to 577 1 to 542       542/542
(100 %)
0 diff
(100 %id)
DC318186 amygdala .e 126 to 620 1 to 495       495/495
(100 %)
0 diff
(100 %id)
DC333600 hippocampus .e 188 to 756 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
DC308833 cerebellum .e 191 to 780 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
DC309920 cerebellum .e 191 to 479 1 to 289       289/289
(100 %)
0 diff
(100 %id)
DC310602 cerebellum .e 191 to 754 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC310697 cerebellum .e 191 to 771 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AK301105 Spleen .e 197 to 1782 1 to 1586 exact tiling clone,   1586/1586
(100 %)
0 diff
(100 %id)
DC389785 Spleen .e 197 to 767 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC389904 Spleen .e 199 to 777 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DC310440 cerebellum .e 273 to 824 1 to 552       552/552
(100 %)
0 diff
(100 %id)
DC310095 cerebellum .e 298 to 843 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
CD242349 brain, Pituitary .e 912 to 1683 21 to 801       781/929
(84 %)
17 diff
(98.2 %id)
AW631254 2 pooled high-grade transitional celltumors, genitourinary tract .e 1376 to 1772 1 to 397       397/397
(100 %)
0 diff
(100 %id)
BI831987 brain, medulla .f 1 to 804 1 to 810   tiling clone,   810/877
(92 %)
22 diff
(97.5 %id)
TI_57173413   .f 1 to 804 1 to 810       810/877
(92 %)
22 diff
(97.5 %id)
BM563820 brain, medulla .f 30 to 926 14 to 914   tiling clone,   901/1086
(82 %)
26 diff
(97.7 %id)
BI828234 brain, medulla .f 41 to 867 1 to 839   tiling clone,   841/840
(100 %)
27 diff
(96.8 %id)
TI_57174962   .f 41 to 867 31 to 869       841/870
(96 %)
29 diff
(96.7 %id)
DA183875 amygdala .g 1 to 480 2 to 482   tiling clone, capped   481/481
(100 %)
2 diff
(99.6 %id)
DA119144 cerebellum .g 237 to 770 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
AK055426 brain .g 606 to 3253 1 to 2648 exact tiling clone, available from FLJ,   2648/2648
(100 %)
1 diff
(100.0 %id)
DA515869 brain .g 607 to 1132 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
DA161031 amygdala .g 637 to 1192 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA202905 brain .g 637 to 1172 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DA252171 caudate nucleus .g 638 to 1182 2 to 553   capped   552/552
(100 %)
8 diff
(98.6 %id)
DA283181 corpus callosum .g 668 to 1222 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA115746 cerebellum .g 1123 to 1688 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BF360685 ovary .g 1426 to 1689 310 to 43       268/312
(85 %)
0 diff
(100 %id)
CR996165 T-Lymphocytes .g 2028 to 2729 1 to 707       707/707
(100 %)
5 diff
(99.3 %id)
DB316820 brain .g 2712 to 3253 542 to 1       542/545
(99 %)
2 diff
(99.7 %id)
DB303022 amygdala .g 2872 to 3256 386 to 1   tiling clone,   386/386
(100 %)
2 diff
(99.5 %id)
DB093031 testis .h 1 to 550 2 to 551   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
DA125762 cerebellum .h 275 to 842 2 to 569 exact tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
DA125165 cerebellum .i 1 to 534 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
DA100785 cerebellum .i 72 to 651 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DB476184 hippocampus .i 128 to 616 1 to 493       493/493
(100 %)
8 diff
(98.4 %id)
DB476412 hippocampus .i 128 to 613 1 to 487       487/487
(100 %)
2 diff
(99.6 %id)
DA119866 cerebellum .i 157 to 718 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA093513 cerebellum .i 272 to 947 2 to 677 exact tiling clone, capped   676/676
(100 %)
0 diff
(100 %id)
DA272348 caudate nucleus .j 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BF895293 marrow .k-u 1 to 392 1 to 392 G31V tiling clone,   392/394
(99 %)
6 diff
(98.5 %id)
DA101639 cerebellum Gene TRIM17, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA103046 cerebellum Gene TRIM17, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI