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Gene TRAT1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
51 supporting clones for gene TRAT1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK291991 small intestine .a 1 to 1078 2 to 1079 I172T tiling clone,   1079/1079
(100 %)
1 diff
(100.0 %id)
DA926206 small intestine .a 1 to 586 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
CR593848 T cells (Jurkat cell line) Cot10-normalized .a 37 to 1727 1 to 1691 exact     1691/1691
(100 %)
0 diff
(100 %id)
AL558415 T cells from T cell leukemia .a 37 to 982 1 to 939 K126*     939/939
(100 %)
9 diff
(99.1 %id)
CD522032 pooled .a 67 to 742 1 to 681       681/774
(87 %)
12 diff
(98.5 %id)
BX506779 Liver .a 68 to 622 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
DB105157 thymus .a 76 to 634 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AF161547 blood .a 85 to 1918 1 to 1833 N166T I167F H168M D169M D170I ... tiling clone,   1833/1834
(99 %)
8 diff
(99.6 %id)
CD639080 pooled .a 85 to 724 1 to 637       637/742
(85 %)
11 diff
(98.6 %id)
NM_016388.2   .a 86 to 1780 1 to 1695 exact RefSeq,   1695/1695
(100 %)
1 diff
(100.0 %id)
D31303   .a 87 to 378 1 to 291       291/291
(100 %)
3 diff
(99.0 %id)
AV761152 bone marrow .a 87 to 486 1 to 394       394/399
(98 %)
10 diff
(97.5 %id)
CD687867 normal nasopharynx .a 88 to 674 38 to 624       587/624
(94 %)
8 diff
(98.8 %id)
CD691066 normal nasopharynx .a 88 to 605 15 to 532       518/532
(97 %)
9 diff
(98.4 %id)
CD702669 normal nasopharynx .a 88 to 625 15 to 552       538/552
(97 %)
9 diff
(98.4 %id)
DA007748   .a 92 to 593 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
BX415345 thymus .a 92 to 893 1 to 802 exact     802/802
(100 %)
0 diff
(100 %id)
DB119081 thymus .a 92 to 641 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB121146 thymus .a 92 to 650 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BC025713 Pancreas, Spleen, adult pooled .a 94 to 1778 1 to 1685 exact tiling clone, available from MGC, AAA   1685/1685
(100 %)
0 diff
(100 %id)
BI833851 pooled pancreas and spleen .a 94 to 904 1 to 816 F175Y G176R L177I I178D R179P ...     816/849
(96 %)
14 diff
(98.4 %id)
TI_57166943   .a 94 to 904 36 to 851 F175Y G176R L177I I178D R179P ...     816/884
(92 %)
20 diff
(97.8 %id)
AJ224878 lymphoid .a 101 to 1780 1 to 1680 exact     1680/1680
(100 %)
3 diff
(99.9 %id)
CD696498 normal nasopharynx .a 110 to 750 23 to 663       641/663
(96 %)
10 diff
(98.5 %id)
TI_57181312   .a 124 to 1027 60 to 961 V52L D53M E54S Y55I Y56I ...     902/1000
(90 %)
28 diff
(97.2 %id)
BI767372 pooled lung and spleen .a 125 to 1027 1 to 901 V52L D53M E54S Y55I Y56I ...     901/940
(95 %)
22 diff
(97.7 %id)
BI909324 leukocyte .a 143 to 743 1 to 600       600/600
(100 %)
7 diff
(98.9 %id)
TI_57235388   .a 143 to 743 35 to 634       600/634
(94 %)
10 diff
(98.5 %id)
TI_1948152703   .a 228 to 738 127 to 637       511/536
(95 %)
0 diff
(100 %id)
BX329167   .a 381 to 1202 825 to 1       825/825
(100 %)
9 diff
(99.0 %id)
CR623824 thymus .a 560 to 1756 1 to 1197       1197/1197
(100 %)
0 diff
(100 %id)
BX414764 thymus .a 560 to 1336 1 to 777   fully sequenced, AAA   777/777
(100 %)
6 diff
(99.3 %id)
FN171797 breast carcinoma .a 623 to 719 1 to 97       97/97
(100 %)
1 diff
(99.0 %id)
FN171262 breast carcinoma .a 918 to 1024 111 to 8     Submitted on the opposite strand 104/111
(93 %)
0 diff
(100 %id)
AL580236 T cells from T cell leukemia .a 923 to 1727 805 to 1       805/848
(94 %)
32 diff
(96.3 %id)
BX414763 thymus .a 1306 to 1756 436 to 1   fully sequenced,   436/436
(100 %)
2 diff
(99.6 %id)
BX111605 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1317 to 1780 478 to 15   AAA   464/464
(100 %)
1 diff
(99.8 %id)
AI445595 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1390 to 1780 419 to 29       391/419
(93 %)
0 diff
(100 %id)
AI453185 adenocarcinoma, Pancreas .a 1400 to 1784 384 to 1       384/384
(100 %)
1 diff
(99.8 %id)
AV735609 cord Blood .a 1465 to 1919 41 to 486   AAA   446/486
(91 %)
6 diff
(98.8 %id)
AJ240085   .b 1 to 1596 1 to 1596 exact tiling clone,   1596/1596
(100 %)
3 diff
(99.9 %id)
BI490901 pooled brain, lung, testis .c 1 to 899 1 to 894 V11L D12M E13S Y14I Y15I ... tiling clone,   894/899
(99 %)
46 diff
(94.9 %id)
TI_43960912   .c 1 to 899 1 to 894 V11L D12M E13S Y14I Y15I ...     894/899
(99 %)
46 diff
(94.9 %id)
CV029577 mixed .c 155 to 324 1 to 170   tiling clone,   170/170
(100 %)
12 diff
(93.0 %id)
DB141220 thymus .d 1 to 549 2 to 550 D53G tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
DB158265 thymus .d 17 to 619 2 to 604 exact tiling clone, capped   603/603
(100 %)
0 diff
(100 %id)
BP368118 thymus .e 1 to 579 1 to 579 exact tiling clone,   579/579
(100 %)
1 diff
(99.9 %id)
DB136222 thymus .f 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
AA381336   Gene TRAT1, variant not shown              
AA381803   Gene TRAT1, variant not shown              
DB139125 thymus Gene TRAT1, variant not shown       capped      
DB345240 thymus Gene TRAT1, variant not shown              
DB162776 thymus Gene TRAT1, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI