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Gene TPH2andTRHDETABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene TPH2andTRHDE back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR005853 Prostate .a 1 to 563 1 to 563   tiling clone,   563/563
(100 %)
6 diff
(99.0 %id)
DB245563 uterus, tumor tissue .a 124 to 634 2 to 514   capped   513/513
(100 %)
4 diff
(99.3 %id)
AF126372   .a 162 to 5778 1 to 5618   tiling clone, AAA   5618/5618
(100 %)
6 diff
(99.9 %id)
DA929600 small intestine .a 172 to 718 2 to 549   capped   548/552
(99 %)
4 diff
(99.3 %id)
BC142706 Donated clones,Novartis FGA collection .a 228 to 4125 1 to 3897   AAA   3897/3897
(100 %)
1 diff
(100.0 %id)
BC150181 Donated clones,Novartis FGA collection .a 228 to 4125 1 to 3897   AAA   3897/3897
(100 %)
1 diff
(100.0 %id)
NM_013381.2   .a 228 to 5779 1 to 5552   RefSeq,   5552/5552
(100 %)
0 diff
(100 %id)
AY358765   .a 235 to 4274 1 to 4041   AAA   4041/4041
(100 %)
4 diff
(100.0 %id)
BF038174 adenocarcinoma, ovary .a 365 to 855 49 to 517       469/518
(90 %)
29 diff
(94.5 %id)
DA111050 cerebellum .a 679 to 1253 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB231191 trachea .a 884 to 1449 8 to 573   capped   566/566
(100 %)
0 diff
(100 %id)
CD624918   .a 1359 to 1758 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
CD624919   .a 1359 to 1758 1 to 400       400/401
(99 %)
2 diff
(99.6 %id)
CD624920   .a 1359 to 1758 400 to 1       400/400
(100 %)
0 diff
(100 %id)
CD624921   .a 1359 to 1758 1 to 400       400/401
(99 %)
1 diff
(99.8 %id)
CD624923   .a 1359 to 1758 1 to 400       400/401
(99 %)
2 diff
(99.6 %id)
CD624926   .a 1359 to 1758 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
CD624927   .a 1359 to 1758 1 to 400       400/401
(99 %)
2 diff
(99.6 %id)
CD624928   .a 1359 to 1758 400 to 1       400/400
(100 %)
0 diff
(100 %id)
CD624930   .a 1359 to 1758 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
CD624931   .a 1359 to 1758 1 to 400       400/401
(99 %)
2 diff
(99.6 %id)
CD624932   .a 1359 to 1758 400 to 1       400/400
(100 %)
0 diff
(100 %id)
CD624933   .a 1359 to 1758 1 to 400       400/401
(99 %)
1 diff
(99.8 %id)
CD624936   .a 1359 to 1758 400 to 1       400/400
(100 %)
0 diff
(100 %id)
CD624937   .a 1359 to 1758 1 to 400       400/401
(99 %)
1 diff
(99.8 %id)
CD624938   .a 1359 to 1758 1 to 400       400/401
(99 %)
1 diff
(99.8 %id)
CD624939   .a 1359 to 1751 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
CD624922   .a 1360 to 1758 399 to 1       399/399
(100 %)
2 diff
(99.5 %id)
CD624929   .a 1364 to 1758 1 to 401       396/402
(98 %)
6 diff
(98.6 %id)
CD624924   .a 1435 to 1758 134 to 462       329/463
(71 %)
9 diff
(98.1 %id)
AL706544 human skeletal muscle .a 1584 to 2323 1 to 741       741/741
(100 %)
3 diff
(99.6 %id)
CD624934   .a 1618 to 1758 1 to 141       141/142
(99 %)
1 diff
(99.3 %id)
CD624935   .a 1618 to 1758 141 to 1       141/141
(100 %)
0 diff
(100 %id)
AI002990 schizophrenic brain S-11 frontal lobe .a 1767 to 2081 315 to 1       315/315
(100 %)
0 diff
(100 %id)
DA336649 hippocampus .a 1969 to 2544 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BP256809 Kidney .a 2107 to 2692 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BC023230 Eye, retinoblastoma .a 2162 to 5727 1 to 3566   available from MGC, AAA   3566/3566
(100 %)
3 diff
(100.0 %id)
BX283191 muscle (skeletal) .a 2317 to 2696 1 to 380       380/380
(100 %)
0 diff
(100 %id)
BF790534 muscle (skeletal) .a 2317 to 3080 1 to 768       768/788
(97 %)
25 diff
(96.9 %id)
R35387 whole brain .a 2647 to 3089 1 to 458       458/464
(98 %)
20 diff
(95.7 %id)
AK026034   .a 2666 to 4282 1 to 1617   tiling clone, available from FLJ, AAA   1617/1617
(100 %)
1 diff
(100.0 %id)
BP254786 Kidney .a 2666 to 3247 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
DA019561   .a 2911 to 3472 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BP192770 brain .a 2921 to 3504 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
DB519387 testis .a 3138 to 3567 1 to 430     Submitted on the opposite strand 430/430
(100 %)
0 diff
(100 %id)
BX499148 Liver .a 3395 to 4020 1 to 625       625/625
(100 %)
2 diff
(99.7 %id)
BI091548 cervix .a 3589 to 4269 12 to 699       688/810
(84 %)
31 diff
(96.2 %id)
BE967653 brain .a 3612 to 4265 1 to 646       646/823
(78 %)
25 diff
(97.0 %id)
AI631882 Kidney .a 3662 to 4272 613 to 3       611/613
(99 %)
0 diff
(100 %id)
AI095151 senescent fibroblast .a 3783 to 4129 351 to 5       347/351
(98 %)
0 diff
(100 %id)
R49688 whole brain .a 3924 to 4283 388 to 15   AAA   374/425
(88 %)
18 diff
(95.8 %id)
AA555212 colon, tumor .a 3959 to 4274 359 to 44   AAA   316/316
(100 %)
0 diff
(100 %id)
T16331   .a 4001 to 4283 283 to 1       283/283
(100 %)
0 diff
(100 %id)
BF036117 adenocarcinoma, ovary .a 4143 to 4870 1 to 752       752/756
(99 %)
56 diff
(92.6 %id)
BQ220808 embryonal carcinoma, cell line, testis .a 4590 to 5253 1 to 674       674/960
(70 %)
23 diff
(97.7 %id)
BY796961 eye .a 4596 to 5200 1 to 605       605/605
(100 %)
0 diff
(100 %id)
BG403364 bladder, transitional cell papilloma, cell line .a 4602 to 5394 1 to 787       787/914
(86 %)
27 diff
(97.1 %id)
BG402022 Kidney .a 4826 to 5541 1 to 715       715/909
(78 %)
22 diff
(97.6 %id)
BX498461 Liver .a 4859 to 5109 1 to 252       252/252
(100 %)
2 diff
(99.3 %id)
DA100731 cerebellum .a 4943 to 5504 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BU193089 eye, retinoblastoma .a 5033 to 5866 1 to 840   tiling clone,   840/877
(95 %)
14 diff
(98.5 %id)
BU180545 eye, retinoblastoma .a 5033 to 5876 1 to 850   tiling clone,   850/850
(100 %)
21 diff
(97.6 %id)
NM_173353.3   .b 1 to 2360 1 to 2360 exact RefSeq,   2360/2360
(100 %)
0 diff
(100 %id)
BC114499 PCR rescued clones .b 64 to 1714 1 to 1651 S53N tiling clone,   1651/1651
(100 %)
1 diff
(100.0 %id)
DB470347.
matches multiple genes
hippocampus .b 135 to 792 1 to 658   tiling clone, also hits gene swyskawby 658/658
(100 %)
1 diff
(99.9 %id)
DA328831 hippocampus .b 151 to 707 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BP349248 brain .c 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
BG220204   .c 490 to 1242 13 to 766   tiling clone,   754/766
(98 %)
10 diff
(98.7 %id)
AK094614 amygdala .d 1 to 2986 2 to 2992 C231R tiling clone, available from FLJ,   2992/2992
(100 %)
8 diff
(99.8 %id)
DA156189 amygdala .d 1 to 567 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
DB301923 amygdala .d 2463 to 2986 524 to 1       524/524
(100 %)
3 diff
(99.5 %id)
AA668253   .e 1 to 442 441 to 1   tiling clone,   441/441
(100 %)
3 diff
(99.4 %id)
DB453938 testis .e 380 to 872 1 to 494   tiling clone,   494/494
(100 %)
1 diff
(99.8 %id)
BI826481 brain, medulla .e 389 to 1191 1 to 803   tiling clone,   803/803
(100 %)
5 diff
(99.4 %id)
TI_57173542   .e 389 to 1191 27 to 829       803/829
(96 %)
11 diff
(98.7 %id)
AL700556 human skeletal muscle .e 913 to 1501 1 to 589   tiling clone,   589/589
(100 %)
0 diff
(100 %id)
DB079322 testis .f 1 to 573 2 to 574 exact tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DA937082 Spleen .g 1 to 589 2 to 590 exact tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
CR746771 embryonal carcinoma, cell line, testis .h 1 to 495 12 to 506 exact tiling clone,   495/506
(97 %)
7 diff
(98.7 %id)
BM466099 embryonal carcinoma, cell line, testis .h 2 to 778 1 to 777   tiling clone,   1060/1121
(94 %)
36 diff
(96.8 %id)
BG532070 embryonal carcinoma, testis .i 1 to 597 1 to 596 exact tiling clone,   596/776
(76 %)
3 diff
(99.7 %id)
BG530287 embryonal carcinoma, testis .j 1 to 587 1 to 587 C8R tiling clone,   587/587
(100 %)
2 diff
(99.7 %id)
AY098914   Gene TPH2andTRHDE, variant not shown         Suspected internal deletion, this clone was ignored    
DB367593   Gene TPH2andTRHDE, variant not shown         This clone was ignored    
DA735353   Gene TPH2andTRHDE, variant not shown       capped This clone was ignored    
BC114442 PCR rescued clones Gene TPH2andTRHDE, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI