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Gene MED12LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
101 supporting clones for gene MED12L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB085527 testis .a 1 to 545 2 to 549   tiling clone, capped   548/548
(100 %)
3 diff
(99.5 %id)
AF399708   .a 364 to 8057 1 to 7692 R691X tiling clone,   7692/7692
(100 %)
4 diff
(100.0 %id)
NM_053002.4   .a 364 to 10712 1 to 10349 exact RefSeq,   10349/10349
(100 %)
0 diff
(100 %id)
BF905758 marrow .a 1467 to 1831 367 to 6     Submitted on the opposite strand 362/367
(98 %)
3 diff
(99.2 %id)
TI_2194696720   .a 1898 to 3067 1170 to 11       1160/1255
(92 %)
31 diff
(97.6 %id)
TI_2194696683   .a 2076 to 3060 994 to 11       984/1262
(77 %)
4 diff
(99.7 %id)
TI_2194697014   .a 2292 to 3477 1 to 1169       1169/1282
(91 %)
20 diff
(98.5 %id)
TI_2194696717   .a 2543 to 3577 1058 to 20       1039/1265
(82 %)
4 diff
(99.7 %id)
DA446764 tongue, tumor tissue .a 2545 to 3048 72 to 575   capped   504/574
(87 %)
0 diff
(100 %id)
AB046855   .a 2546 to 8058 17 to 5527   available from KIAA,   5511/5526
(99 %)
5 diff
(100.0 %id)
TI_2194696680   .a 2559 to 3576 1033 to 21       1013/1242
(81 %)
6 diff
(99.6 %id)
BF989139 placenta_normal .a 2638 to 2912 298 to 23       276/298
(92 %)
9 diff
(97.0 %id)
TI_2194696682   .a 2810 to 4023 1198 to 10       1124/1262
(89 %)
32 diff
(97.5 %id)
TI_2194696719   .a 2827 to 4032 1199 to 6       1194/1246
(95 %)
29 diff
(97.7 %id)
AU132578   .a 2846 to 3677 2 to 832   capped   831/831
(100 %)
5 diff
(99.4 %id)
TI_2194697013   .a 2975 to 4111 1 to 1134       1134/1316
(86 %)
10 diff
(99.3 %id)
TI_2194697001   .a 3018 to 4249 1220 to 9       1214/1282
(94 %)
45 diff
(96.5 %id)
TI_2194697037   .a 3449 to 4542 1 to 1082       1082/1243
(87 %)
22 diff
(98.3 %id)
BM718880 eye, fetal eye .a 3541 to 4286 1 to 750       750/750
(100 %)
13 diff
(98.3 %id)
TI_2194696712   .a 3564 to 4725 1165 to 6       1160/1254
(92 %)
9 diff
(99.3 %id)
TI_2194696674   .a 3617 to 4712 1095 to 13       1085/1238
(87 %)
20 diff
(98.4 %id)
DA188662 amygdala .a 3634 to 4186 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
TI_2194697038   .a 3804 to 4853 9 to 1054       1046/1261
(82 %)
11 diff
(99.2 %id)
TI_2194696721   .a 3851 to 5064 1224 to 8       1217/1271
(95 %)
32 diff
(97.5 %id)
AF090917 Liver .a 3928 to 5222 21 to 1315   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1295/1318
(98 %)
11 diff
(99.2 %id)
AI110860 Liver .a 3928 to 4442 21 to 536       516/540
(95 %)
9 diff
(98.4 %id)
AF075359 Liver .a 3928 to 4442 21 to 536       516/540
(95 %)
9 diff
(98.4 %id)
TI_2194696684   .a 3961 to 5053 1096 to 11       1086/1242
(87 %)
11 diff
(99.2 %id)
TI_2194697016   .a 4418 to 5659 10 to 1229       1220/1288
(94 %)
12 diff
(99.1 %id)
TI_2194696715   .a 4425 to 5533 1109 to 2       1108/1270
(87 %)
8 diff
(99.4 %id)
TI_2194696678   .a 4451 to 5528 1069 to 3       1067/1297
(82 %)
16 diff
(98.8 %id)
TI_2194697017   .a 4921 to 6106 6 to 1184       1179/1296
(90 %)
18 diff
(98.7 %id)
CN360011 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 5064 to 5408 1 to 345       345/345
(100 %)
0 diff
(100 %id)
TI_151758492   .a 5088 to 5712 687 to 64       624/1014
(61 %)
35 diff
(96.6 %id)
AU154084   .a 5147 to 5691 544 to 1       544/553
(98 %)
4 diff
(99.3 %id)
DB341096 testis .a 5148 to 5691 546 to 1       546/546
(100 %)
2 diff
(99.7 %id)
BX484379   .a 5186 to 5981 1 to 802       802/804
(99 %)
7 diff
(99.2 %id)
BF508576   .a 5349 to 5708 360 to 2   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 359/370
(97 %)
0 diff
(100 %id)
BQ367333 placenta_normal .a 5650 to 5941 7 to 298       292/298
(97 %)
6 diff
(98.0 %id)
BG008064 placenta_normal .a 5655 to 6005 13 to 363       351/363
(96 %)
6 diff
(98.4 %id)
AA648291 germinal center B cell .a 6551 to 6985 434 to 1       434/434
(100 %)
1 diff
(99.8 %id)
TI_2194695079   .a 6721 to 7790 1165 to 104   tiling clone,   1062/1328
(79 %)
1 diff
(100.0 %id)
BQ429110 testis .a 7527 to 8281 1 to 756   tiling clone,   756/756
(100 %)
18 diff
(97.7 %id)
BF970855 adrenal cortex carcinoma, cell line, adrenal gland .a 7578 to 8263 1 to 683       683/1495
(45 %)
15 diff
(99.0 %id)
BX956402   .a 7933 to 8489 1 to 557   tiling clone,   557/557
(100 %)
0 diff
(100 %id)
DA751769   .a 8084 to 8647 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA148244 amygdala .a 8201 to 8776 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
AA309925   .a 8370 to 8880 1 to 510       510/510
(100 %)
5 diff
(99.1 %id)
DA147971 amygdala .a 8392 to 8968 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
CN290862 embryonic stem cells, DMSO-treated H9 cellline .a 8615 to 9197 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DA086328 cerebellum .a 8776 to 9351 2 to 575   tiling clone, capped   574/574
(100 %)
8 diff
(98.7 %id)
AK124913 substantia nigra .a 8784 to 10712 1 to 1928   tiling clone, available from FLJ,   1928/1928
(100 %)
6 diff
(99.7 %id)
DA341805 substantia nigra .a 8785 to 9280 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
BI601671 brain, hypothalamus .a 9412 to 9516 584 to 692       542/1048
(51 %)
33 diff
(96.9 %id)
TI_45214727   .a 9412 to 9516 704 to 812       538/1168
(46 %)
21 diff
(98.3 %id)
DB325105   .a 10131 to 10678 550 to 1       550/550
(100 %)
2 diff
(99.7 %id)
TI_2194695071   .b 1 to 1095 86 to 1172   tiling clone,   1067/1260
(84 %)
31 diff
(97.6 %id)
TI_2194699099   .b 1 to 919 79 to 994       916/1216
(75 %)
14 diff
(98.9 %id)
BC144559 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .b 6 to 6406 1 to 6400 R1070Q tiling clone,   6400/6400
(100 %)
7 diff
(99.9 %id)
TI_2194697031   .b 569 to 1764 9 to 1201       1193/1310
(91 %)
17 diff
(98.8 %id)
TI_2194696722   .b 4501 to 5654 1150 to 6       1145/1212
(94 %)
39 diff
(96.8 %id)
TI_2194697000   .b 4550 to 5710 1159 to 8       1152/1296
(88 %)
10 diff
(99.3 %id)
TI_2194697032   .b 4597 to 5768 1 to 1155       1155/1273
(90 %)
20 diff
(98.5 %id)
TI_2194696713   .b 4964 to 6177 1205 to 2       1204/1252
(96 %)
39 diff
(96.9 %id)
TI_2194697030   .b 5024 to 6087 13 to 1074   tiling clone,   1062/1244
(85 %)
13 diff
(99.0 %id)
TI_2194696675   .b 5122 to 6162 1045 to 13   tiling clone,   1033/1212
(85 %)
9 diff
(99.3 %id)
AK022714   .c 1 to 2868 1 to 2868 I251T tiling clone, available from FLJ,   2868/2868
(100 %)
1 diff
(100.0 %id)
AU125717   .c 2 to 795 2 to 797   capped   796/897
(88 %)
7 diff
(99.3 %id)
AU149321   .c 2294 to 2868 576 to 1       576/576
(100 %)
16 diff
(97.3 %id)
AF388365   .d 1 to 2862 1 to 2862 exact tiling clone,   2862/2862
(100 %)
0 diff
(100 %id)
AF388364   .e 1 to 2757 1 to 2757 exact tiling clone,   2757/2757
(100 %)
0 diff
(100 %id)
TI_2194696677   .f 1 to 1120 1127 to 8   tiling clone,   1120/1262
(88 %)
11 diff
(99.2 %id)
CN360010 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 1009 to 1326 1 to 318   tiling clone,   318/318
(100 %)
0 diff
(100 %id)
DA451557 tongue, tumor tissue .g 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BX108326 pooled .h 1 to 457 1 to 457 exact tiling clone, AAA   457/457
(100 %)
0 diff
(100 %id)
CN314545 embryonic stem cells, cell lines H1, H7, andH9 .h 15 to 749 1 to 735   tiling clone,   735/738
(99 %)
4 diff
(99.5 %id)
AA931311 pooled .h 64 to 457 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
DB564991.
matches multiple genes
hypothalamus .h 530 to 980 452 to 1     also hits gene P2RY12 452/452
(100 %)
2 diff
(99.6 %id)
DB564140.
matches multiple genes
hypothalamus .h 539 to 955 421 to 1     also hits gene P2RY12 421/421
(100 %)
10 diff
(97.7 %id)
DB570316.
matches multiple genes
hypothalamus .h 539 to 1029 492 to 1   tiling clone, also hits gene P2RY12 492/492
(100 %)
2 diff
(99.6 %id)
DA250734 caudate nucleus .i-u 1 to 581 2 to 579 V19L I56Q T57F V58L L59D ... tiling clone, capped   578/578
(100 %)
6 diff
(99.0 %id)
AA284420 germinal center B cell .i-u 287 to 716 1 to 425   tiling clone,   425/425
(100 %)
3 diff
(99.3 %id)
H97302   .i-u 306 to 636 1 to 327       327/328
(99 %)
3 diff
(99.1 %id)
BG573209 placenta .i-u 588 to 910 1 to 326   tiling clone,   326/514
(63 %)
6 diff
(98.9 %id)
DV461171 cochlea, ear .i-u 786 to 1327 24 to 568   tiling clone,   545/672
(81 %)
22 diff
(96.8 %id)
AA428945   .i-u 890 to 1326 1 to 437   tiling clone,   437/437
(100 %)
1 diff
(99.8 %id)
AF087980   .i-u 1077 to 1631 1 to 555       555/555
(100 %)
5 diff
(99.1 %id)
CN260552 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i-u 1147 to 1432 1 to 286       286/286
(100 %)
2 diff
(99.4 %id)
BG620396 placenta .i-u 1148 to 1748 1 to 602       602/879
(68 %)
4 diff
(99.6 %id)
DB365008   .i-u 1152 to 1745 590 to 1       590/599
(98 %)
10 diff
(98.4 %id)
DB521414.
matches multiple genes
testis .i-u 1302 to 1763 462 to 1   tiling clone, also hits gene IGSF10 462/462
(100 %)
0 diff
(100 %id)
AA292658 germinal center B cell .i-u 1432 to 1745 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AA827655 germinal center B cell .i-u 1441 to 1745 333 to 29   AAA   305/305
(100 %)
2 diff
(99.4 %id)
DB506769.
matches multiple genes
testis .i-u 1636 to 2113 483 to 2   tiling clone, also hits gene IGSF10 482/483
(99 %)
0 diff
(100 %id)
DA112355 cerebellum .j-u 1 to 551 2 to 553   tiling clone, capped   552/552
(100 %)
2 diff
(99.7 %id)
TI_2194696985   .j-u 349 to 1306 9 to 960   tiling clone,   952/1285
(74 %)
11 diff
(99.2 %id)
AI018271 pooled .j-u 853 to 1221 369 to 1   tiling clone,   369/369
(100 %)
0 diff
(100 %id)
CR744558 pooled .k-u 1 to 647 1 to 648 R10C R36K tiling clone,   648/648
(100 %)
4 diff
(99.4 %id)
DB457250.
matches multiple genes
testis .l 1 to 494 1 to 494 exact tiling clone, also hits gene meefeybo 494/494
(100 %)
1 diff
(99.8 %id)
BF905909 marrow .m-u 1 to 466 1 to 466 F27L C29G L31I F32S tiling clone,   466/466
(100 %)
14 diff
(97.0 %id)
AW998526 breast_normal .n-u 1 to 186 13 to 193 L3R S4N I5S H6P L7H ... tiling clone,   181/201
(90 %)
6 diff
(97.1 %id)
AK128165 testis Gene MED12L, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
TI_2194696685   Gene MED12L, variant not shown         This clone was ignored    
TI_2194696999   Gene MED12L, variant not shown         Suspected internal deletion, this clone was ignored    
TI_2194697015   Gene MED12L, variant not shown         This clone was ignored    
N73613 liver and spleen Gene MED12L, variant not shown         This clone was ignored    
W02600 liver and spleen Gene MED12L, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k-u, .l, .m-u, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C