cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AB017802 | .b | 1 to 1049 | 8 to 1056 | exact | tiling clone, AAA | 1049/1056 (99 %) | 6 diff (99.5 %id) | ||
AK098015 | thymus | .a-u | 1523 to 3662 | 1 to 2138 | exact | tiling clone, available from FLJ, | 2138/2138 (100 %) | 2 diff (100.0 %id) | |
AK295308 | caudate nucleus | .b | 153 to 1320 | 98 to 1262 | N97E E99F F100Q Q101E E102I ... | tiling clone, | 1165/1262 (92 %) | 8 diff (99.4 %id) | |
AL449536 | testis | .b | 733 to 1049 | 1 to 317 | AAA | 317/317 (100 %) | 0 diff (100 %id) | ||
AL449594 | testis | .b | 749 to 1051 | 1 to 303 | 303/303 (100 %) | 0 diff (100 %id) | |||
AL449595 | testis | .b | 749 to 1042 | 1 to 294 | 294/294 (100 %) | 4 diff (98.7 %id) | |||
AL449814 | heart | .g-u | 4 to 545 | 1 to 542 | exact | tiling clone, | 542/542 (100 %) | 1 diff (99.9 %id) | |
AL449849 | heart | .g-u | 1 to 370 | 1 to 369 | H3T M4* | 369/369 (100 %) | 4 diff (99.0 %id) | ||
BC036785 | Brain, adult medulla | .b | 78 to 1055 | 1 to 978 | exact | available from MGC, AAA | 978/978 (100 %) | 0 diff (100 %id) | |
BM272669 | insulinoma, Pancreas | .a-u | 90 to 611 | 529 to 8 | 522/529 (98 %) | 0 diff (100 %id) | |||
DA158649 | amygdala | .a-u | 746 to 1301 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
DA159354 | amygdala | .a-u | 747 to 1322 | 2 to 577 | capped | 576/576 (100 %) | 1 diff (99.9 %id) | ||
DA159788 | amygdala | .a-u | 445 to 1000 | 2 to 557 | tiling clone, capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
DA172670 | amygdala | .c | 1 to 489 | 2 to 490 | S17F | tiling clone, capped | 489/489 (100 %) | 2 diff (99.6 %id) | |
DA177395 | amygdala | .a-u | 746 to 1082 | 2 to 338 | capped | 337/337 (100 %) | 1 diff (99.8 %id) | ||
DA198803 | brain | .a-u | 753 to 1326 | 2 to 575 | capped | 574/574 (100 %) | 1 diff (99.9 %id) | ||
DB303899 | brain | .a-u | 2575 to 3079 | 505 to 1 | 505/505 (100 %) | 1 diff (99.9 %id) | |||
DA250588 | caudate nucleus | .h | 1 to 478 | 29 to 508 | exact | tiling clone, capped | 480/484 (99 %) | 3 diff (99.4 %id) | |
DA252802 | caudate nucleus | .f | 1 to 566 | 2 to 568 | V40X H41T T42H H43A V44C ... | tiling clone, capped | 567/567 (100 %) | 2 diff (99.7 %id) | |
DA253539 | caudate nucleus | .c | 36 to 611 | 2 to 577 | tiling clone, capped | 576/576 (100 %) | 1 diff (99.9 %id) | ||
DA255317 | caudate nucleus | .a-u | 719 to 1297 | 2 to 580 | capped | 579/579 (100 %) | 1 diff (99.9 %id) | ||
DA261421 | caudate nucleus | .a-u | 753 to 1313 | 2 to 563 | capped | 562/562 (100 %) | 2 diff (99.7 %id) | ||
DA267185 | caudate nucleus | .b | 153 to 616 | 98 to 558 | capped | 461/557 (82 %) | 7 diff (98.8 %id) | ||
DA272586 | caudate nucleus | .a-u | 752 to 1312 | 2 to 563 | capped | 562/562 (100 %) | 2 diff (99.7 %id) | ||
DA272620 | caudate nucleus | .a-u | 752 to 1319 | 2 to 570 | capped | 569/569 (100 %) | 2 diff (99.7 %id) | ||
DA277527 | corpus callosum | .a-u | 1115 to 1676 | 2 to 564 | tiling clone, capped | 563/563 (100 %) | 1 diff (99.9 %id) | ||
DA277624 | corpus callosum | .a-u | 785 to 1320 | 2 to 537 | capped | 536/536 (100 %) | 1 diff (99.9 %id) | ||
DA279477 | corpus callosum | .a-u | 746 to 1217 | 2 to 474 | capped | 473/473 (100 %) | 2 diff (99.6 %id) | ||
DA281469 | corpus callosum | .a-u | 753 to 1307 | 2 to 557 | capped | 556/556 (100 %) | 2 diff (99.7 %id) | ||
DA283505 | corpus callosum | .a-u | 746 to 1293 | 2 to 549 | capped | 548/550 (99 %) | 2 diff (99.7 %id) | ||
DA288269 | corpus callosum | .a-u | 746 to 1259 | 2 to 516 | capped | 515/515 (100 %) | 4 diff (99.3 %id) | ||
DA291697 | hippocampus | .a-u | 1049 to 1541 | 2 to 495 | capped | 494/494 (100 %) | 3 diff (99.4 %id) | ||
DA295324 | hippocampus | .a-u | 746 to 1320 | 2 to 578 | capped | 577/577 (100 %) | 5 diff (99.2 %id) | ||
DA333025 | hippocampus | .a-u | 450 to 1019 | 2 to 571 | capped | 570/570 (100 %) | 1 diff (99.9 %id) | ||
DA352349 | substantia nigra | .a-u | 753 to 1317 | 2 to 566 | capped | 565/565 (100 %) | 1 diff (99.9 %id) | ||
DA352560 | substantia nigra | .a-u | 973 to 1440 | 2 to 469 | capped | 468/468 (100 %) | 3 diff (99.4 %id) | ||
BX108679 | .b | 87 to 591 | 1 to 502 | 502/502 (100 %) | 1 diff (99.9 %id) | ||||
BP216188 | corpus callosum | .d | 1 to 581 | 5 to 582 | tiling clone, | 582/582 (100 %) | 6 diff (99.0 %id) | ||
CV030910 | mixed | .b | 158 to 816 | 1 to 659 | 659/659 (100 %) | 0 diff (100 %id) | |||
EG328416 | pooled | .e | 1 to 569 | 1 to 569 | exact | tiling clone, | 569/571 (99 %) | 1 diff (99.9 %id) | |
DB491141. matches multiple genes | hypothalamus | .j | 1 to 408 | 1 to 405 | S23F | also hits gene geypey | 405/405 (100 %) | 4 diff (99.1 %id) | |
DB492715. matches multiple genes | hypothalamus | .i | 1 to 465 | 1 to 465 | S14F | tiling clone, | also hits gene husura | 465/465 (100 %) | 2 diff (99.6 %id) |
DB503519. matches multiple genes | hypothalamus | .j | 1 to 465 | 1 to 465 | S23F | tiling clone, | also hits gene geypey | 465/465 (100 %) | 2 diff (99.6 %id) |
AA484848 | Ewing's sarcoma | .a-u | 2762 to 3083 | 326 to 5 | 322/332 (96 %) | 0 diff (100 %id) | |||
AA484743 | Ewing's sarcoma | .a-u | 2826 to 3083 | 263 to 5 | 259/263 (98 %) | 0 diff (100 %id) | |||
AA897715 | pooled | .b | 888 to 1051 | 168 to 5 | 164/168 (97 %) | 0 diff (100 %id) | |||
AI027252 | .b | 641 to 1049 | 437 to 29 | AAA | 409/409 (100 %) | 1 diff (99.8 %id) | |||
AI971908 | fibrotheoma, ovary | .a-u | 965 to 1320 | 356 to 1 | 356/356 (100 %) | 7 diff (98.1 %id) | |||
AW341688 | pooled | .a-u | 784 to 1303 | 520 to 1 | tiling clone, | 520/520 (100 %) | 0 diff (100 %id) | ||
BF116090 | fibrotheoma, ovary | .a-u | 946 to 1320 | 375 to 1 | 375/375 (100 %) | 0 diff (100 %id) | |||
BM560580 | brain, medulla | .b | 71 to 935 | 13 to 879 | AAA | 867/1016 (85 %) | 22 diff (97.9 %id) | ||
BQ787725 | insulinoma, Pancreas | .a-u | 1 to 611 | 616 to 5 | tiling clone, | 612/624 (98 %) | 0 diff (100 %id) | ||
EB385778 | eye, optic nerve | .a-u | 560 to 1312 | 1 to 753 | 753/753 (100 %) | 1 diff (99.9 %id) | |||
NM_014477.2 | .b | 77 to 1055 | 1 to 979 | exact | RefSeq, AAA | 979/979 (100 %) | 0 diff (100 %id) | ||
DA823937 | pericardium | .a-u | 719 to 1306 | 2 to 589 | capped | 588/588 (100 %) | 2 diff (99.7 %id) | ||
TI_1948069689 | .b | 156 to 825 | 135 to 806 | 672/1185 (56 %) | 17 diff (98.6 %id) | ||||
TI_1948069690 | .b | 156 to 315 | 131 to 290 | 160/186 (86 %) | 6 diff (96.8 %id) | ||||
TI_1948069691 | .b | 156 to 1029 | 1001 to 128 | 874/1258 (69 %) | 11 diff (99.2 %id) | ||||
TI_1948069692 | .b | 395 to 1029 | 772 to 130 | 643/1157 (55 %) | 30 diff (97.5 %id) | ||||
TI_1948069987 | .b | 156 to 326 | 137 to 306 | 170/196 (86 %) | 8 diff (96.0 %id) | ||||
TI_1948069989 | .b | 412 to 1029 | 750 to 128 | 623/1117 (55 %) | 23 diff (98.0 %id) | ||||
TI_1948070299 | .b | 156 to 814 | 130 to 791 | 662/1193 (55 %) | 34 diff (97.2 %id) | ||||
TI_1948070300 | .b | 156 to 980 | 136 to 957 | 822/1338 (61 %) | 18 diff (98.7 %id) | ||||
TI_1948070301 | .b | 281 to 1029 | 888 to 128 | 761/1422 (53 %) | 18 diff (98.8 %id) | ||||
TI_1948070302 | .b | 409 to 1029 | 751 to 128 | 624/1103 (56 %) | 27 diff (97.6 %id) | ||||
TI_1948070602 | .b | 156 to 309 | 134 to 287 | 154/180 (85 %) | 6 diff (96.7 %id) | ||||
TI_1948070603 | .b | 204 to 1029 | 964 to 128 | 837/1281 (65 %) | 28 diff (97.9 %id) | ||||
TI_1948070604 | .b | 411 to 1029 | 747 to 129 | 619/1124 (55 %) | 18 diff (98.4 %id) | ||||
DB118226 | thymus | .a-u | 1524 to 1858 | 2 to 336 | capped | 335/335 (100 %) | 0 diff (100 %id) | ||
DB343794 | thymus | .a-u | 3102 to 3662 | 559 to 1 | tiling clone, | 559/559 (100 %) | 1 diff (99.9 %id) | ||
BM694236 | eye, RPE and Choroid | .a-u | 2422 to 2790 | 1 to 369 | fully sequenced, | 369/369 (100 %) | 0 diff (100 %id) | ||
BU733105 | eye, RPE and Choroid | .a-u | 2760 to 3078 | 337 to 19 | fully sequenced, AAA | 319/319 (100 %) | 1 diff (99.7 %id) | ||
TI_1948070603 | .b | 204 to 1029 | 964 to 128 | 837/1281 (65 %) | 28 diff (97.9 %id) | ||||
TI_1948070604 | .b | 411 to 1029 | 747 to 129 | 619/1124 (55 %) | 18 diff (98.4 %id) | ||||
DB118226 | THYMU2025325 | TP53TG5.aAug10-unspliced | 1858 | 336 | THYMU2025325 | 335 | 0 | ||
DB343794 | THYMU2025325 | TP53TG5.aAug10-unspliced | 3662 | 1 | THYMU2025325 | 559 | 1 | ||
BM694236 | UI-E-CI1-afo-j-10-0-UI | TP53TG5.aAug10-unspliced | 2790 | 369 | UI-E-CI1-afo-j-10-0-UI | 369 | 0 | ||
BM694236 | UI-E-CI1-afo-j-10-0-UI | TP53TG5.aAug10-unspliced | 2790 | 369 | UI-E-CI1-afo-j-10-0-UI | 369 | 0 | ||
BU733105 | UI-E-CI1-afo-j-10-0-UI | TP53TG5.aAug10-unspliced | 3078 | 19 | UI-E-CI1-afo-j-10-0-UI | 319 | 1 | ||
BU733105 | UI-E-CI1-afo-j-10-0-UI | TP53TG5.aAug10-unspliced | 3078 | 19 | UI-E-CI1-afo-j-10-0-UI | 319 | 1 |
? | Gene Summary | Gene on genome | mRNA:.a-u, .b, .c, .d, .e, .f, .g-u, .h, .i, .j | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |