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Gene TNFSF9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
45 supporting clones for gene TNFSF9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP214127 cerebrum .a 1 to 571 1 to 570       570/570
(100 %)
4 diff
(99.3 %id)
CR624086 HeLa cells Cot 25-normalized .a 7 to 1604 1 to 1598 exact tiling clone,   1598/1598
(100 %)
0 diff
(100 %id)
NM_003811.3   .a 7 to 1671 1 to 1665 exact RefSeq, AAA   1665/1665
(100 %)
0 diff
(100 %id)
BC104805 Lung, PCR rescued clones .a 17 to 880 1 to 864 exact     864/864
(100 %)
1 diff
(99.9 %id)
BC104807 Lung, PCR rescued clones .a 17 to 886 1 to 870 exact     870/870
(100 %)
1 diff
(99.9 %id)
TI_1241109267   .a 17 to 886 916 to 47 exact   Submitted on the opposite strand 870/1218
(71 %)
1 diff
(100.0 %id)
TI_1241109273   .a 17 to 886 55 to 925 exact   Submitted on the opposite strand 871/1222
(71 %)
15 diff
(98.8 %id)
TI_1241112881   .a 17 to 886 925 to 56 exact   Submitted on the opposite strand 870/1247
(69 %)
1 diff
(100.0 %id)
TI_1241113265   .a 17 to 886 65 to 934 exact   Submitted on the opposite strand 870/1284
(67 %)
8 diff
(99.4 %id)
TI_1241109265   .a 17 to 886 925 to 56 exact   Submitted on the opposite strand 870/1192
(72 %)
1 diff
(100.0 %id)
TI_1241109271   .a 17 to 885 51 to 920 exact   Submitted on the opposite strand 870/1226
(70 %)
9 diff
(99.3 %id)
TI_1241112883   .a 17 to 886 932 to 62 S5L D6*   Submitted on the opposite strand 871/1154
(75 %)
4 diff
(99.7 %id)
TI_1241113267   .a 17 to 886 66 to 935 exact   Submitted on the opposite strand 870/1271
(68 %)
8 diff
(99.4 %id)
AK313999 cord Blood .a 34 to 809 1 to 776 S108C     776/776
(100 %)
2 diff
(99.8 %id)
BM790119 stomach .a 34 to 583 1 to 550       550/550
(100 %)
0 diff
(100 %id)
BM856840 stomach .a 34 to 383 1 to 350       350/350
(100 %)
0 diff
(100 %id)
DA433315 cord Blood .a 35 to 474 2 to 441   capped   440/440
(100 %)
2 diff
(99.6 %id)
U03398   .a 42 to 1663 1 to 1619 exact     1619/1619
(100 %)
3 diff
(99.9 %id)
BQ722355 sympathetic trunk .a 51 to 752 1 to 708       708/966
(73 %)
25 diff
(97.5 %id)
BM545061 ovary (pool of 3) .a 55 to 1023 15 to 991       977/1132
(86 %)
35 diff
(97.0 %id)
AL555486 placenta .a 56 to 938 1 to 876       876/876
(100 %)
7 diff
(99.3 %id)
BU502747 carcinoma, cell line, Prostate .a 69 to 782 1 to 718       718/953
(75 %)
10 diff
(99.0 %id)
BQ890400 eye, normal pigmented retinal epithelium .a 73 to 944 1 to 879       879/879
(100 %)
16 diff
(98.2 %id)
BX372166   .a 149 to 1044 901 to 1       901/901
(100 %)
26 diff
(97.2 %id)
TI_1241110439   .a 481 to 886 1 to 406       406/1277
(31 %)
5 diff
(99.7 %id)
TI_1241110835   .a 482 to 886 1 to 405       405/1245
(32 %)
3 diff
(99.8 %id)
BU631673 cell lines, Chondrosarcoma .a 506 to 1062 575 to 19   AAA   557/557
(100 %)
0 diff
(100 %id)
AI918803 pooled germ cell tumors .a 611 to 1062 452 to 1       452/463
(97 %)
8 diff
(98.3 %id)
TI_149314479   .a 840 to 1672 929 to 114   tiling clone, AAA   816/930
(87 %)
57 diff
(93.9 %id)
BF001607 colon, colon tumor, RER+ .a 883 to 1368 484 to 2       483/484
(99 %)
0 diff
(100 %id)
AL577974 placenta .a 952 to 1638 684 to 1       684/684
(100 %)
15 diff
(97.9 %id)
CA310489 cell lines, Chondrosarcoma .a 982 to 1669 706 to 21       686/706
(97 %)
0 diff
(100 %id)
BM782490 Ascites, stomach .a 1004 to 1572 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
AL578353 placenta .a 1013 to 1604 592 to 1       592/847
(69 %)
10 diff
(98.9 %id)
CA307086 Alveolar Macrophage, lung .a 1073 to 1666 608 to 19   AAA   590/599
(98 %)
3 diff
(99.5 %id)
BQ276769 mixed (pool of 40 RNAs) .a 1113 to 1667 1 to 555       555/901
(61 %)
21 diff
(97.7 %id)
CA426922 cell lines, Chondrosarcoma .a 1151 to 1671 539 to 19   tiling clone, AAA   521/521
(100 %)
0 diff
(100 %id)
BM744249 Ascites, stomach .a 1226 to 1639 1 to 414       414/414
(100 %)
2 diff
(99.6 %id)
BX107825   .a 1265 to 1671 1 to 407   AAA   407/407
(100 %)
2 diff
(99.6 %id)
AI142376   .a 1265 to 1657 1 to 393       393/393
(100 %)
2 diff
(99.5 %id)
AA778663   .a 1271 to 1667 400 to 4       397/400
(99 %)
0 diff
(100 %id)
AI357267 pooled germ cell tumors .a 1275 to 1665 407 to 17   AAA   391/391
(100 %)
1 diff
(99.8 %id)
AA513716 breast .a 1373 to 1666 294 to 1       294/512
(57 %)
0 diff
(100 %id)
AA493857 thyroid .a 1402 to 1668 282 to 16   AAA   267/267
(100 %)
1 diff
(99.7 %id)
BU607557 Human Lung Epithelial cells, lung .a 1405 to 1669 281 to 19   AAA   263/287
(91 %)
3 diff
(99.0 %id)
BM857081 stomach Gene TNFSF9, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI