To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene TNFSF13BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene TNFSF13B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57196238   TNFSF13B.a 1 to 799 36 to 839   tiling clone,   804/842
(95 %)
13 diff
(98.5 %id)
BI818459 pooled brain, lung, testis TNFSF13B.a 2 to 799 1 to 803       803/806
(99 %)
8 diff
(99.1 %id)
NM_006573.3   TNFSF13B.a 2 to 1205 1 to 1204 exact RefSeq,   1204/1204
(100 %)
0 diff
(100 %id)
BG571258 placenta TNFSF13B.a 89 to 864 1 to 781       781/788
(99 %)
11 diff
(98.7 %id)
BC020674 placenta TNFSF13B.a 90 to 1194 1 to 1105 exact available from MGC, AAA Possibly primed on the genome, locally A rich (36/39 A in genome downstream of last aligned base) 1105/1107
(99 %)
2 diff
(99.9 %id)
AY358881   TNFSF13B.a 100 to 1204 1 to 1105 exact AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 1105/1105
(100 %)
1 diff
(100.0 %id)
BM931041 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid TNFSF13B.a 102 to 778 1 to 677       677/677
(100 %)
0 diff
(100 %id)
AF186114   TNFSF13B.a 112 to 1205 1 to 1094 exact tiling clone,   1094/1094
(100 %)
0 diff
(100 %id)
AF134715 dendrite TNFSF13B.a 125 to 1204 1 to 1080 exact AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 1080/1080
(100 %)
0 diff
(100 %id)
AF132600   TNFSF13B.a 133 to 1204 1 to 1072 exact AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 1072/1072
(100 %)
0 diff
(100 %id)
AF116456   TNFSF13B.a 151 to 1202 1 to 1052 exact     1052/1052
(100 %)
1 diff
(100.0 %id)
TI_1948222115   TNFSF13B.a 265 to 780 123 to 637   fully sequenced,   515/637
(80 %)
6 diff
(99.1 %id)
AF136293   TNFSF13B.a 269 to 1126 1 to 858 exact     858/858
(100 %)
1 diff
(99.9 %id)
AY129225   TNFSF13B.a 269 to 1126 1 to 858 exact     858/858
(100 %)
0 diff
(100 %id)
CR541818   TNFSF13B.a 269 to 1126 1 to 858 exact     858/858
(100 %)
0 diff
(100 %id)
EL735645 mixed TNFSF13B.a 269 to 870 1 to 602       602/602
(100 %)
0 diff
(100 %id)
HM636064   TNFSF13B.a 269 to 755 1 to 487       487/495
(98 %)
2 diff
(99.6 %id)
TI_1948221585   TNFSF13B.a 269 to 1133 992 to 118 D2E D3*     875/1372
(63 %)
20 diff
(98.6 %id)
TI_1948221759   TNFSF13B.a 271 to 1133 983 to 119       865/1385
(62 %)
11 diff
(99.3 %id)
DA674650   TNFSF13B.a 349 to 920 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
TI_154107933   TNFSF13B.a 377 to 1204 873 to 56   AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 818/934
(87 %)
13 diff
(98.7 %id)
CF593718 Human Placenta, placenta TNFSF13B.a 379 to 1141 31 to 800   AAA   770/845
(91 %)
18 diff
(97.9 %id)
BI518989 leukocyte TNFSF13B.a 391 to 1107 1 to 717       717/943
(76 %)
25 diff
(97.4 %id)
BI912461 leukocyte TNFSF13B.a 391 to 1203 1 to 818       818/818
(100 %)
7 diff
(99.2 %id)
TI_44460332   TNFSF13B.a 391 to 1218 56 to 893       820/998
(82 %)
47 diff
(95.3 %id)
TI_57247552   TNFSF13B.a 391 to 1203 33 to 850       818/850
(96 %)
13 diff
(98.5 %id)
BI908928 leukocyte TNFSF13B.a 392 to 1208 1 to 816       816/820
(99 %)
21 diff
(97.5 %id)
TI_57235181   TNFSF13B.a 394 to 1208 41 to 854       814/858
(94 %)
23 diff
(97.4 %id)
CD705877 normal nasopharynx TNFSF13B.a 401 to 800 32 to 431       400/431
(92 %)
8 diff
(98.2 %id)
TI_57162018   TNFSF13B.a 423 to 1200 27 to 804       778/810
(96 %)
9 diff
(98.9 %id)
BI832664 pooled pancreas and spleen TNFSF13B.a 424 to 1200 1 to 777       777/783
(99 %)
3 diff
(99.7 %id)
BP286644 lung TNFSF13B.a 424 to 1005 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA670267   TNFSF13B.a 431 to 987 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BX110396 liver and spleen TNFSF13B.a 436 to 1179 27 to 770       744/770
(96 %)
5 diff
(99.4 %id)
AY129226   TNFSF13B.a 500 to 1126 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
BU930369 Prostate TNFSF13B.a 508 to 1202 1 to 697       697/703
(99 %)
9 diff
(98.8 %id)
AY129227   TNFSF13B.a 602 to 1126 1 to 525       525/525
(100 %)
1 diff
(99.9 %id)
CD370655 Alveolar Macrophage, lung TNFSF13B.a 618 to 1222 605 to 1   tiling clone,   605/605
(100 %)
1 diff
(99.9 %id)
BE972339 testis TNFSF13B.a 625 to 1014 1 to 395       393/479
(82 %)
11 diff
(97.8 %id)
AY129228   TNFSF13B.a 650 to 1126 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
BX646857 Liver TNFSF13B.a 670 to 1178 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BG413450 pooled TNFSF13B.a 691 to 1211 521 to 1       521/538
(96 %)
1 diff
(99.9 %id)
TI_1948222116   TNFSF13B.a 719 to 1133 534 to 120   fully sequenced,   415/534
(77 %)
0 diff
(100 %id)
R16882 liver and spleen TNFSF13B.a 861 to 1214 359 to 1       359/365
(98 %)
7 diff
(98.1 %id)
T87299 liver and spleen TNFSF13B.a 862 to 1210 366 to 12       355/377
(94 %)
6 diff
(98.5 %id)
BM193824 leukopheresis TNFSF13B.a 864 to 1204 1 to 341       341/348
(97 %)
9 diff
(97.5 %id)
D79690 aorta TNFSF13B.a 932 to 1204 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
BF875951 lung_tumor TNFSF13B.a 935 to 1181 253 to 7     Submitted on the opposite strand 247/253
(97 %)
5 diff
(98.1 %id)
FN059442 breast carcinoma TNFSF13B.a 982 to 1076 1 to 99       99/105
(94 %)
5 diff
(95.3 %id)
NM_001145645.1   TNFSF13B.b 1 to 1147 1 to 1147 exact RefSeq,   1147/1147
(100 %)
0 diff
(100 %id)
DN999073 bone marrow TNFSF13B.b 83 to 675 7 to 597   tiling clone,   591/597
(98 %)
2 diff
(99.7 %id)
TI_1948221934   TNFSF13B.b 264 to 383 134 to 252       119/143
(83 %)
6 diff
(95.9 %id)
AY302751   TNFSF13B.b 268 to 1068 1 to 801 exact     801/801
(100 %)
0 diff
(100 %id)
DC297207 cord Blood TNFSF13B.b 417 to 975 1 to 559       559/559
(100 %)
0 diff
(100 %id)
CD370869 Alveolar Macrophage, lung TNFSF13B.b 505 to 1164 660 to 1   tiling clone,   660/660
(100 %)
1 diff
(99.9 %id)
TI_1948221935   TNFSF13B.b 913 to 1075 281 to 119       163/182
(89 %)
0 diff
(100 %id)
AV710643 adrenal cortico adenoma for Cushing'ssyndrome TNFSF13B.c 1 to 703 8 to 711 exact tiling clone,   711/720
(98 %)
6 diff
(99.2 %id)
DC340288 thalamus TNFSF13B.c 20 to 670 1 to 652 R2X     652/652
(100 %)
1 diff
(99.9 %id)
BU929202 placenta TNFSF13B.c 23 to 725 1 to 703 N136X     703/806
(87 %)
5 diff
(99.4 %id)
BG533792 Liver TNFSF13B.c 26 to 702 1 to 681 R43Q S45K A46C L47P E48R ...     681/870
(78 %)
8 diff
(99.1 %id)
AA682496 liver and spleen TNFSF13B.c 248 to 702 456 to 2       455/456
(99 %)
0 diff
(100 %id)
AA166695   TNFSF13B.c 255 to 704 446 to 1       446/452
(98 %)
4 diff
(99.2 %id)
AI749928 aorta TNFSF13B.c 262 to 697 437 to 2       436/437
(99 %)
0 diff
(100 %id)
DB465722 hippocampus TNFSF13B.c 311 to 702 1 to 395   AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 395/395
(100 %)
3 diff
(99.3 %id)
DB479132 hippocampus TNFSF13B.c 311 to 823 1 to 509   tiling clone,   509/509
(100 %)
4 diff
(99.3 %id)
AA906714 carcinoid, lung TNFSF13B.c 333 to 710 378 to 1       378/378
(100 %)
0 diff
(100 %id)
BE241489 leukopheresis TNFSF13B.c 514 to 702 189 to 1       189/189
(100 %)
3 diff
(98.5 %id)
GD160729   TNFSF13B.c 636 to 714 1 to 74       74/74
(100 %)
6 diff
(91.9 %id)
GD157555   TNFSF13B.c 640 to 718 7 to 85       79/85
(92 %)
6 diff
(93.0 %id)
AW936201 denis_drash TNFSF13B.c 643 to 928 285 to 4   tiling clone, Submitted on the opposite strand 282/320
(88 %)
0 diff
(100 %id)
AW936189 denis_drash TNFSF13B.c 713 to 906 196 to 3     Submitted on the opposite strand 194/262
(74 %)
0 diff
(100 %id)
AW936187 denis_drash TNFSF13B.c 714 to 906 198 to 3     Submitted on the opposite strand 196/198
(98 %)
0 diff
(100 %id)
AW875421 pnet TNFSF13B.c 717 to 931 215 to 2       214/215
(99 %)
0 diff
(100 %id)
AW938012 denis_drash TNFSF13B.c 730 to 923 201 to 6     Submitted on the opposite strand 196/201
(97 %)
0 diff
(100 %id)
AW937942 denis_drash TNFSF13B.c 772 to 920 164 to 11     Submitted on the opposite strand 154/164
(93 %)
0 diff
(100 %id)
BG497971 adenocarcinoma, Prostate TNFSF13B.c 828 to 1593 1 to 768       768/816
(94 %)
44 diff
(94.7 %id)
BU199273   TNFSF13B.c 877 to 1566 1 to 687   tiling clone,   687/822
(83 %)
24 diff
(97.1 %id)
BQ776352 Pancreas, Purified pancreatic islet TNFSF13B.c 915 to 1509 1 to 595   tiling clone,   595/595
(100 %)
0 diff
(100 %id)
BF571708 melanotic melanoma, high MDR, skin TNFSF13B.c 929 to 1630 1 to 696       696/750
(92 %)
24 diff
(96.8 %id)
CK902225 Pancreas, Purified pancreatic islet TNFSF13B.c 956 to 1259 1 to 304     Submitted on the opposite strand 304/304
(100 %)
0 diff
(100 %id)
FN134683 breast carcinoma TNFSF13B.c 1026 to 1144 1 to 118       118/118
(100 %)
1 diff
(99.2 %id)
BF102648 adenocarcinoma, Prostate TNFSF13B.c 1042 to 1756 1 to 705       705/734
(96 %)
22 diff
(97.1 %id)
FN172242 breast carcinoma TNFSF13B.c 1089 to 1215 1 to 129       129/129
(100 %)
3 diff
(97.7 %id)
AA344217 gall bladder TNFSF13B.c 1224 to 1540 1 to 317       317/317
(100 %)
0 diff
(100 %id)
AW963062   TNFSF13B.c 1224 to 1985 1 to 763   tiling clone,   763/763
(100 %)
8 diff
(99.0 %id)
BF213865 bone marrow, from acute myelogenous leukemia TNFSF13B.c 1233 to 1935 1 to 695   AAA   695/840
(82 %)
29 diff
(96.6 %id)
D62937   TNFSF13B.c 1406 to 1779 1 to 373       373/373
(100 %)
1 diff
(99.8 %id)
D62979   TNFSF13B.c 1406 to 1697 1 to 289       289/294
(98 %)
3 diff
(99.0 %id)
D79906 aorta TNFSF13B.c 1406 to 1718 1 to 313       313/313
(100 %)
4 diff
(98.8 %id)
FN158614 breast carcinoma TNFSF13B.c 1441 to 1554 114 to 1     Submitted on the opposite strand 114/114
(100 %)
0 diff
(100 %id)
FN169777 breast carcinoma TNFSF13B.c 1507 to 1623 117 to 1     Submitted on the opposite strand 117/117
(100 %)
0 diff
(100 %id)
FN067335 breast carcinoma TNFSF13B.c 1592 to 1685 94 to 1     Submitted on the opposite strand 94/94
(100 %)
0 diff
(100 %id)
BQ778438 Pancreas, Purified pancreatic islet TNFSF13B.c 1643 to 2170 532 to 5   tiling clone,   528/532
(99 %)
0 diff
(100 %id)
AI446030 adenocarcinoma, Pancreas TNFSF13B.c 1709 to 2163 458 to 4       455/458
(99 %)
0 diff
(100 %id)
FN160301 breast carcinoma TNFSF13B.c 1722 to 1807 85 to 1     Submitted on the opposite strand 85/86
(98 %)
3 diff
(96.6 %id)
DB547806 hippocampus TNFSF13B.c 1730 to 2164 1 to 435     Submitted on the opposite strand 435/435
(100 %)
1 diff
(99.8 %id)
FN096796 breast carcinoma TNFSF13B.c 1731 to 1846 1 to 112       112/112
(100 %)
8 diff
(92.9 %id)
DB532505 hippocampus TNFSF13B.c 1740 to 2164 1 to 425     Submitted on the opposite strand 425/425
(100 %)
1 diff
(99.8 %id)
FN091930 breast carcinoma TNFSF13B.c 1837 to 1927 1 to 88       88/89
(98 %)
4 diff
(95.6 %id)
AI950787 lung, two pooled squamous cell carcinomas TNFSF13B.c 1883 to 2163 284 to 4       281/284
(98 %)
0 diff
(100 %id)
AW151360 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus TNFSF13B.c 1929 to 2163 266 to 28   AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 239/239
(100 %)
13 diff
(94.6 %id)
AW151367 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus TNFSF13B.c 1931 to 2163 260 to 28   AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 233/233
(100 %)
3 diff
(98.8 %id)
AV712496   TNFSF13B.d 1 to 408 1 to 408   tiling clone,   408/408
(100 %)
1 diff
(99.8 %id)
AV712599   TNFSF13B.d 1 to 638 1 to 639 F81X E125* tiling clone,   639/659
(96 %)
4 diff
(99.4 %id)
AV712475   TNFSF13B.d 6 to 638 1 to 627 F23C W26R V53A L57F K91*     627/645
(97 %)
40 diff
(93.8 %id)
AI871491 anaplastic oligodendroglioma, brain TNFSF13B.e 1 to 507 507 to 1 E31G tiling clone,   507/507
(100 %)
7 diff
(98.7 %id)
BU929119 placenta TNFSF13B.f-u 1 to 794 1 to 801 P16H C17V A18P Y19T S20H ... tiling clone,   801/803
(99 %)
30 diff
(96.3 %id)
BP367030 thymus TNFSF13B.g-u 1 to 580 1 to 580 exact tiling clone,   580/580
(100 %)
2 diff
(99.7 %id)
BX482686   TNFSF13B.g-u 163 to 628 1 to 466 exact tiling clone,   466/466
(100 %)
1 diff
(99.8 %id)
AV741119 cord Blood TNFSF13B.g-u 198 to 425 1 to 229   AAA   229/229
(100 %)
5 diff
(97.9 %id)
AF150302 umbilical cord blood TNFSF13B.g-u 226 to 425 1 to 200       200/200
(100 %)
0 diff
(100 %id)
BF170307 blood TNFSF13B.g-u 228 to 612 1 to 386 K11R P13Q V17G V19G V20G ...     386/386
(100 %)
31 diff
(92.0 %id)
BE241598 leukopheresis TNFSF13B.h-u 1 to 160 1 to 160 P28S N29F N34X Y35X S36X ... tiling clone,   160/160
(100 %)
4 diff
(97.5 %id)
AK309629   Gene TNFSF13B, variant not shown         Suspected internal deletion, this clone was ignored    
DQ857728   Gene TNFSF13B, variant not shown         Suspected internal deletion, this clone was ignored    
AV653767 corresponding non cancerous liver tissue Gene TNFSF13B, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DC428730   Gene TNFSF13B, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI