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Gene TNFRSF11ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
49 supporting clones for gene TNFRSF11A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF018253   TNFRSF11A.a 1 to 3126 1 to 3129   tiling clone,   3129/3136
(99 %)
5 diff
(99.9 %id)
NM_003839.2   TNFRSF11A.a 1 to 3132 1 to 3132   RefSeq,   3132/3133
(99 %)
5 diff
(99.9 %id)
DN999683   TNFRSF11A.a 2 to 728 1 to 727       727/727
(100 %)
4 diff
(99.5 %id)
BQ954369 large cell carcinoma, lung TNFRSF11A.a 1144 to 2059 28 to 947       920/947
(97 %)
16 diff
(98.4 %id)
BE548822 cervical carcinoma cell line, cervix TNFRSF11A.a 1437 to 1715 1 to 279       279/279
(100 %)
1 diff
(99.7 %id)
AB209762 brain TNFRSF11A.b 1 to 3591 1 to 3591 A10T S20P tiling clone,   3591/3591
(100 %)
2 diff
(100.0 %id)
CN423490 embryonic stem cells, cell lines H1, H7, andH9 TNFRSF11A.b 68 to 563 1 to 496       496/496
(100 %)
1 diff
(99.8 %id)
BG386057 adenocarcinoma cell line, colon TNFRSF11A.b 842 to 1469 1 to 642       642/678
(94 %)
47 diff
(93.1 %id)
D82541   TNFRSF11A.b 1347 to 1572 1 to 227       227/227
(100 %)
7 diff
(97.0 %id)
AF086403   TNFRSF11A.b 1415 to 1912 501 to 2   AAA Submitted on the opposite strand 500/501
(99 %)
0 diff
(100 %id)
W74421 heart TNFRSF11A.b 1425 to 1835 1 to 411     Submitted on the opposite strand 411/411
(100 %)
6 diff
(98.6 %id)
W79157 heart TNFRSF11A.b 1517 to 1905 394 to 1     Submitted on the opposite strand 394/403
(97 %)
9 diff
(97.8 %id)
CK904786 Islets of Langerhans, Pancreas TNFRSF11A.b 1572 to 2155 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BX105126 heart TNFRSF11A.b 1581 to 1912 336 to 2     Submitted on the opposite strand 335/336
(99 %)
0 diff
(100 %id)
BM069857 Islets of Langerhans, Pancreas TNFRSF11A.b 1588 to 1714 1 to 127       127/127
(100 %)
0 diff
(100 %id)
BX096241 heart TNFRSF11A.b 1594 to 1912 323 to 2     Submitted on the opposite strand 322/330
(97 %)
0 diff
(100 %id)
BQ027399 mixed TNFRSF11A.b 1729 to 2208 497 to 19   AAA   479/480
(99 %)
1 diff
(99.8 %id)
DA528124 brain TNFRSF11A.b 1733 to 2340 2 to 609   capped   608/608
(100 %)
0 diff
(100 %id)
DA426301 colon TNFRSF11A.b 1735 to 2290 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP269305 thyroid TNFRSF11A.b 1886 to 2451 1 to 564       564/572
(98 %)
7 diff
(98.8 %id)
BE896495 melanotic melanoma, skin TNFRSF11A.b 1991 to 2824 1 to 840       840/876
(95 %)
36 diff
(95.9 %id)
DB199501 trachea TNFRSF11A.b 2049 to 2620 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BF906685 stomach TNFRSF11A.b 2081 to 2513 431 to 1     Submitted on the opposite strand 431/432
(99 %)
9 diff
(98.0 %id)
AI733866 colon, tumor TNFRSF11A.b 2198 to 2584 21 to 406       386/406
(95 %)
6 diff
(98.6 %id)
AA143538 colon, tumor TNFRSF11A.b 2206 to 2734 1 to 531       531/532
(99 %)
16 diff
(97.0 %id)
CB121771 Liver TNFRSF11A.b 2539 to 3030 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
BM069608 Islets of Langerhans, Pancreas TNFRSF11A.b 2770 to 3331 565 to 4       562/565
(99 %)
0 diff
(100 %id)
BU198092   TNFRSF11A.b 2784 to 3407 1 to 618       618/618
(100 %)
24 diff
(96.2 %id)
BE969992 Pancreas TNFRSF11A.b 2808 to 3369 1 to 562   AAA   562/562
(100 %)
2 diff
(99.7 %id)
AI888991 2 pooled tumors (clear cell type), Kidney TNFRSF11A.b 2814 to 3329 528 to 13   AAA   516/516
(100 %)
2 diff
(99.7 %id)
AI888982 2 pooled tumors (clear cell type), Kidney TNFRSF11A.b 2814 to 3329 527 to 12   AAA   516/516
(100 %)
0 diff
(100 %id)
BF335946 colon TNFRSF11A.b 2868 to 3223 376 to 22       355/387
(91 %)
0 diff
(100 %id)
BQ575158 Chondrosarcoma Grade II, Left Pelvis TNFRSF11A.b 2892 to 3591 718 to 19   AAA   700/700
(100 %)
5 diff
(99.3 %id)
AW026379 brain, glioblastoma (pooled) TNFRSF11A.b 3078 to 3591 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
AK125052 thalamus TNFRSF11A.b 3116 to 7215 1 to 4100   tiling clone, available from FLJ,   4100/4100
(100 %)
3 diff
(100.0 %id)
DA403964 thalamus TNFRSF11A.b 3117 to 3642 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
AI732573 colon, tumor TNFRSF11A.b 3135 to 3585 457 to 7       451/457
(98 %)
0 diff
(100 %id)
AI086138 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus TNFRSF11A.b 3142 to 3598 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
AA143539 colon, tumor TNFRSF11A.b 3252 to 3569 326 to 1       326/330
(98 %)
10 diff
(97.0 %id)
BF355529 head_neck TNFRSF11A.b 6261 to 6843 1 to 579       579/582
(99 %)
19 diff
(96.8 %id)
BF355528 head_neck TNFRSF11A.b 6295 to 6829 1 to 533   tiling clone,   533/533
(100 %)
8 diff
(98.5 %id)
DB312291 thalamus TNFRSF11A.b 6686 to 7215 530 to 1       530/532
(99 %)
1 diff
(99.9 %id)
BI016327 lung_tumor TNFRSF11A.c 1 to 438 33 to 469   tiling clone,   437/469
(93 %)
8 diff
(98.3 %id)
BF809521 colon_ins TNFRSF11A.c 431 to 593 163 to 4   tiling clone, Submitted on the opposite strand 160/173
(92 %)
9 diff
(94.8 %id)
CK905880 insulinoma, Pancreas TNFRSF11A.d-u 1 to 592 617 to 26 exact tiling clone,   592/617
(95 %)
0 diff
(100 %id)
BQ130591 insulinoma, Pancreas TNFRSF11A.d-u 112 to 591 506 to 27 exact tiling clone, AAA   480/480
(100 %)
1 diff
(99.8 %id)
BQ130846 insulinoma, Pancreas TNFRSF11A.e 1 to 559 1 to 559 exact tiling clone,   559/559
(100 %)
6 diff
(99.0 %id)
CK905881 insulinoma, Pancreas TNFRSF11A.e 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
6 diff
(99.0 %id)
AW937819 denis_drash TNFRSF11A.f 1 to 523 542 to 14 Q2K T3C L4R D5A Q6L ... tiling clone, Submitted on the opposite strand 529/542
(97 %)
16 diff
(97.1 %id)
AW191732 Pancreas, pancreatic islets TNFRSF11A.g-u 1 to 251 1 to 251 R3Q I21X F22X tiling clone, AAA   251/251
(100 %)
4 diff
(98.5 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI