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Gene TNFRSF10CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
129 supporting clones for gene TNFRSF10C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AU126850   .a 1 to 538 2 to 538   tiling clone, to resequence, capped   537/537
(100 %)
2 diff
(99.7 %id)
DB293561   .a 3 to 712 2 to 712   tiling clone, capped   711/713
(99 %)
13 diff
(98.2 %id)
DB363624   .a 1418 to 1800 383 to 1   tiling clone, to resequence,   383/383
(100 %)
4 diff
(99.0 %id)
DB383502   .a 3245 to 3796 556 to 4   tiling clone,   553/556
(99 %)
0 diff
(100 %id)
DN999192   .b 1 to 667 7 to 673   tiling clone,   667/673
(99 %)
2 diff
(99.8 %id)
NM_003841.3   .b 225 to 1716 1 to 1492 I269T RefSeq, AAA   1492/1492
(100 %)
2 diff
(99.9 %id)
DC380668 placenta .b 225 to 803 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DA677679   .b 330 to 891 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BG545631 lung .b 331 to 1099 1 to 764   available from MGC,   764/769
(99 %)
45 diff
(94.2 %id)
BP264484 umbilical vein .b 332 to 890 1 to 559       559/559
(100 %)
6 diff
(99.0 %id)
BP253243 Kidney .b 332 to 912 1 to 582       582/582
(100 %)
8 diff
(98.7 %id)
AU099549   .b 332 to 631 1 to 300       300/300
(100 %)
5 diff
(98.4 %id)
BC017852 lung .b 332 to 1298 1 to 967   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 967/1034
(93 %)
3 diff
(99.8 %id)
DA672639   .b 332 to 931 2 to 601   capped   600/600
(100 %)
1 diff
(99.9 %id)
DA677574   .b 332 to 798 113 to 579   capped   467/578
(80 %)
6 diff
(99.0 %id)
AK313213   .b 333 to 1312 1 to 982 R7L F8L L9P P10T L11V ...     982/982
(100 %)
6 diff
(99.4 %id)
AL603419 human skeletal muscle .b 333 to 794 1 to 462       462/462
(100 %)
0 diff
(100 %id)
DA641049 Liver .b 333 to 884 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA670620   .b 333 to 879 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA670888   .b 333 to 915 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA670958   .b 333 to 879 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA671017   .b 333 to 920 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA671547   .b 333 to 903 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA671876   .b 333 to 927 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA672185   .b 333 to 930 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA673013   .b 333 to 922 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA674680   .b 333 to 905 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA675141   .b 333 to 917 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA676097   .b 333 to 924 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA676230   .b 333 to 919 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA676558   .b 333 to 789 2 to 458   capped   457/457
(100 %)
1 diff
(99.8 %id)
DA676680   .b 333 to 907 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA677477   .b 333 to 918 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA677491   .b 333 to 816 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DA677494   .b 333 to 923 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA677660   .b 333 to 909 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA678132   .b 333 to 934 2 to 604   capped   603/603
(100 %)
1 diff
(99.9 %id)
DA711840   .b 333 to 879 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA862912 placenta .b 333 to 908 2 to 577   capped   576/578
(99 %)
2 diff
(99.7 %id)
DA883240   .b 333 to 903 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA671782   .b 334 to 918 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA675091   .b 334 to 914 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
DA675755   .b 334 to 929 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA675954   .b 334 to 914 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA670594   .b 336 to 867 2 to 534   capped   533/536
(99 %)
3 diff
(99.5 %id)
DA672140   .b 336 to 917 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA672650   .b 336 to 933 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA673813   .b 336 to 871 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA674406   .b 336 to 946 2 to 612   capped   611/611
(100 %)
0 diff
(100 %id)
DA674937   .b 336 to 921 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DA677856   .b 336 to 924 2 to 590   capped   589/593
(99 %)
2 diff
(99.7 %id)
DA677962   .b 336 to 913 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AF012536   .b 341 to 1451 1 to 1111 I269T AAA   1111/1111
(100 %)
2 diff
(99.9 %id)
AY358281   .b 341 to 1442 1 to 1102 I269T     1102/1102
(100 %)
2 diff
(99.9 %id)
DN999329   .b 341 to 789 1 to 448       448/448
(100 %)
6 diff
(98.7 %id)
AF016267 liver and spleen .b 357 to 1716 13 to 1372 N13T S14L D16T R17E A18R ... AAA   1360/1372
(99 %)
14 diff
(99.0 %id)
AF033854   .b 357 to 1716 1 to 1357 I269T AAA   1357/1357
(100 %)
5 diff
(99.7 %id)
DA642422 Liver .b 386 to 1015 2 to 632   capped   631/631
(100 %)
2 diff
(99.7 %id)
AF014794   .b 397 to 1716 14 to 1333 I269T tiling clone, AAA   1320/1333
(99 %)
11 diff
(99.2 %id)
T71406 liver and spleen .b 398 to 747 1 to 352       350/352
(99 %)
11 diff
(96.9 %id)
AA031883 uterus .b 398 to 730 1 to 341       341/343
(99 %)
12 diff
(96.6 %id)
R10995 liver and spleen .b 399 to 654 1 to 259       259/259
(100 %)
12 diff
(95.4 %id)
AA150849 uterus .b 399 to 798 1 to 398       398/398
(100 %)
4 diff
(99.0 %id)
BC125041 PCR rescued clones .b 412 to 1585 1 to 1174 I269T     1174/1174
(100 %)
2 diff
(99.9 %id)
BC125042 PCR rescued clones .b 412 to 1585 1 to 1174 I269T     1174/1174
(100 %)
2 diff
(99.9 %id)
AF020502   .b 413 to 1312 1 to 900 I269T     900/900
(100 %)
3 diff
(99.7 %id)
BF899559 marrow .b 491 to 912 5 to 425       421/428
(98 %)
13 diff
(97.0 %id)
AF012629   .b 533 to 1312 1 to 780       780/780
(100 %)
2 diff
(99.8 %id)
CR541857   .b 533 to 1312 1 to 780   tiling clone,   780/780
(100 %)
0 diff
(100 %id)
BM996302 lung, Metastatic Chondrosarcoma .b 654 to 1317 680 to 17   AAA   664/664
(100 %)
3 diff
(99.6 %id)
BE175577 head_neck .b 694 to 1047 14 to 365       352/365
(96 %)
9 diff
(97.6 %id)
DA673167   .b 769 to 1364 2 to 597   capped   596/596
(100 %)
4 diff
(99.4 %id)
DA945937 Spleen .b 790 to 1363 2 to 576   capped   575/575
(100 %)
4 diff
(99.4 %id)
AA861474   .b 794 to 1245 452 to 1       452/452
(100 %)
3 diff
(99.4 %id)
BG436729 large cell carcinoma, lung .b 823 to 1550 1 to 674       597/676
(88 %)
34 diff
(95.0 %id)
AA150541 uterus .b 877 to 1327 454 to 1       454/454
(100 %)
12 diff
(97.4 %id)
BI025710 marrow .b 879 to 1095 222 to 5       218/222
(98 %)
1 diff
(99.6 %id)
DB249899 uterus .b 971 to 1486 2 to 517   capped   516/516
(100 %)
2 diff
(99.7 %id)
DA673658   .b 1096 to 1648 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BP252368 Kidney .b 1114 to 1695 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BF056044 pooled germ cell tumors .b 1133 to 1330 209 to 12   AAA   198/198
(100 %)
5 diff
(97.5 %id)
R10996 liver and spleen .b 1303 to 1705 407 to 1       407/409
(99 %)
9 diff
(97.8 %id)
BI025542 marrow .b 1424 to 1731 310 to 1       310/310
(100 %)
22 diff
(93.0 %id)
BI025556 marrow .b 1430 to 1731 302 to 1       302/324
(93 %)
1 diff
(99.7 %id)
T71272 liver and spleen .b 1472 to 1697 222 to 1       222/222
(100 %)
6 diff
(97.3 %id)
BQ334712.
matches multiple genes
marrow .b 1603 to 1830 1 to 229   tiling clone, also hits gene floweyby 229/234
(97 %)
12 diff
(94.9 %id)
BF893087.
matches multiple genes
marrow .b 1693 to 1861 1 to 171   tiling clone, also hits gene floweyby 171/172
(99 %)
9 diff
(94.8 %id)
DA672030   .b 1738 to 2340 2 to 604   tiling clone, capped   603/603
(100 %)
1 diff
(99.9 %id)
TI_154196728   .b 1951 to 2766 4 to 813       810/1034
(78 %)
6 diff
(99.5 %id)
AK026079   .b 1966 to 3050 1 to 1083   tiling clone, available from FLJ, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1083/1085
(99 %)
10 diff
(99.1 %id)
BJ997728 Wilms tumor .b 2709 to 3201 1 to 493   tiling clone,   493/493
(100 %)
0 diff
(100 %id)
CF455471 peripheral nervous system .b 3039 to 3766 28 to 755   tiling clone,   728/755
(96 %)
6 diff
(99.3 %id)
BI029453 marrow .b 3157 to 3472 1 to 316       316/316
(100 %)
0 diff
(100 %id)
BI029464 marrow .b 3157 to 3435 1 to 279       279/279
(100 %)
0 diff
(100 %id)
AI088884 brain, glioblastoma (pooled) .b 3625 to 4004 380 to 1   tiling clone,   380/380
(100 %)
1 diff
(99.8 %id)
BJ997729 Wilms tumor .b 3843 to 4382 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
DA884373   .b 3972 to 4440 2 to 470   tiling clone, capped   469/469
(100 %)
1 diff
(99.8 %id)
BF904106 marrow .b 4268 to 4608 348 to 13   tiling clone, Submitted on the opposite strand 336/348
(96 %)
0 diff
(100 %id)
BF892565 marrow .b 4355 to 4818 7 to 471   tiling clone,   465/471
(98 %)
6 diff
(98.8 %id)
BI021343 marrow .b 4481 to 4797 17 to 326   tiling clone,   310/326
(95 %)
19 diff
(94.2 %id)
BM919484 pooled pancreas and spleen .b 4825 to 5757 23 to 958   tiling clone,   936/992
(94 %)
11 diff
(98.9 %id)
AW837078 leiomios .b 5268 to 5574 305 to 2       304/317
(95 %)
0 diff
(100 %id)
TI_149304903   .b 5333 to 6111 858 to 88   tiling clone, AAA   771/929
(82 %)
9 diff
(99.1 %id)
BM978405 lung, Primary Lung Epithelial Cells .b 5482 to 6111 648 to 19   AAA   630/630
(100 %)
0 diff
(100 %id)
BE172856 head_neck .b 5653 to 6013 361 to 2     Submitted on the opposite strand 360/361
(99 %)
0 diff
(100 %id)
AI927930 Kidney .b 5689 to 6287 601 to 3       599/601
(99 %)
0 diff
(100 %id)
AW190876 adenocarcinoma, Pancreas .b 5756 to 6289 534 to 1       534/534
(100 %)
3 diff
(99.5 %id)
AI858380 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 5765 to 6289 525 to 1       525/525
(100 %)
2 diff
(99.7 %id)
DB330411   .b 5768 to 6289 522 to 1   tiling clone,   522/522
(100 %)
0 diff
(100 %id)
AW073511 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .b 5834 to 6289 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AI806712 pooled .b 5857 to 6228 372 to 1       372/372
(100 %)
0 diff
(100 %id)
D20062   .b 5858 to 6281 1 to 427     Submitted on the opposite strand 427/444
(96 %)
9 diff
(98.0 %id)
AI914042 carcinoid, lung .b 5869 to 6288 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
AI095370 senescent fibroblast .b 5873 to 6292 423 to 4   tiling clone,   420/423
(99 %)
0 diff
(100 %id)
AI380792 B-cell, chronic lymphotic leukemia .b 5898 to 6295 408 to 1       408/408
(100 %)
6 diff
(98.6 %id)
CR748825 B-cell, chronic lymphotic leukemia .c-u 1 to 481 1 to 481 P9T tiling clone,   481/481
(100 %)
1 diff
(99.8 %id)
AK298664   .d 1 to 894 1 to 894 exact tiling clone,   894/894
(100 %)
4 diff
(99.6 %id)
DC428699   .d 1 to 589 1 to 590 R7L F8L L9P P10T L11V ...     590/590
(100 %)
2 diff
(99.7 %id)
BC021569 Placenta, choriocarcinoma .e 1 to 1239 1 to 1239 E19G tiling clone, available from MGC, AAA   1239/1239
(100 %)
2 diff
(99.9 %id)
BE901975 choriocarcinoma, placenta .e 18 to 830 1 to 805       805/1213
(66 %)
20 diff
(98.4 %id)
BF182836 large cell carcinoma, lung .e 60 to 728 1 to 665       665/665
(100 %)
8 diff
(98.8 %id)
BC005043 Lung, large cell carcinoma .e 61 to 1231 1 to 1171   available from MGC, AAA   1171/1171
(100 %)
1 diff
(100.0 %id)
BM564133 blood, natural killer cells, cell line .e 80 to 820 1 to 753       753/1226
(61 %)
26 diff
(97.9 %id)
CV026984 mixed .e 686 to 1152 1 to 467       467/638
(73 %)
2 diff
(99.7 %id)
TI_1948098488   .e 690 to 1152 128 to 590   AAA   463/520
(89 %)
6 diff
(98.9 %id)
TI_1948098889   .e 720 to 1152 566 to 130       437/1384
(31 %)
0 diff
(100 %id)
AW237658 Kidney .e 787 to 1231 445 to 1       445/445
(100 %)
4 diff
(99.2 %id)
AW297198   .e 815 to 1239 442 to 18   AAA   425/425
(100 %)
2 diff
(99.6 %id)
EC477431 Prostate .e 1123 to 1234 113 to 2       112/113
(99 %)
0 diff
(100 %id)
EC535809 Prostate .e 1123 to 1234 111 to 1       111/111
(100 %)
1 diff
(99.1 %id)
DA692081   .f 1 to 580 2 to 581 exact tiling clone, capped   580/580
(100 %)
1 diff
(99.9 %id)
AW372179 breast .f 324 to 579 1 to 258       256/258
(99 %)
7 diff
(97.3 %id)
BI020428 marrow .g 1 to 482 6 to 484 exact tiling clone,   479/484
(98 %)
6 diff
(98.8 %id)
BI019989 marrow .g 58 to 460 3 to 408       406/408
(99 %)
6 diff
(98.6 %id)
DC429146   Gene TNFRSF10C, variant not shown         Suspected internal deletion, this clone was ignored    
AK298718   Gene TNFRSF10C, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI