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Gene TMEM196TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
64 supporting clones for gene TMEM196 back to top
cDNA accession
Links to the sequence		 Tissue

most 5' clones
in red		 Match
mRNA		 From bp
to bp
in mRNA		 From bp
to bp
in accs.		 Clone encodes
complete protein
(with AA variation)		 Features Anomalies
detected by
AceView		 Accession
match over
(% length)		 Base differences
relative to genome
(% identity)
DA001911   .a 351 to 922 2 to 574   tiling clone, capped   573/573
(100 %)		 1 diff
(99.9 %id)
BC030104 Brain, hypothalamus .d 1 to 764 7 to 770 exact tiling clone, available from MGC, AAA   770/770
(100 %)		 9 diff
(98.9 %id)
BG186258   .a 1454 to 2057 14 to 616   AAA   603/616
(97 %)		 9 diff
(98.6 %id)
BG189974   .a 1449 to 2029 11 to 593       583/698
(83 %)		 38 diff
(94.6 %id)
BG192514   .d 341 to 770 13 to 450   AAA   436/450
(96 %)		 10 diff
(97.8 %id)
BG193043   .a 1700 to 2424 1 to 723   AAA   723/723
(100 %)		 9 diff
(98.8 %id)
BG196123   .b 1 to 740 7 to 746 I9K S16Q G17D V19S M20* tiling clone, AAA   747/746
(100 %)		 5 diff
(99.4 %id)
BG197605   .b 1 to 740 7 to 745 L3X I9K S16Q G17D V19S ... tiling clone, AAA   745/745
(100 %)		 5 diff
(99.4 %id)
BG200807   .a 1709 to 2471 9 to 771       763/772
(98 %)		 7 diff
(99.1 %id)
BG201206   .a 1716 to 2471 1 to 758       758/758
(100 %)		 34 diff
(95.6 %id)
BG202236   .a 1706 to 2297 50 to 642       593/867
(68 %)		 32 diff
(96.4 %id)
BG202782   .a 1700 to 2424 1 to 726   AAA   726/726
(100 %)		 23 diff
(96.9 %id)
BG212718   .a 1398 to 1952 49 to 604       556/954
(58 %)		 21 diff
(97.8 %id)
BG220033   .a 1709 to 2064 5 to 358   AAA   354/358
(98 %)		 6 diff
(98.4 %id)
BG220995   .b 74 to 740 20 to 685   AAA   666/685
(97 %)		 10 diff
(98.6 %id)
DA183061 amygdala .a 249 to 811 2 to 564   capped   563/563
(100 %)		 0 diff
(100 %id)
DA238187 brain .a 1 to 468 2 to 469   tiling clone, capped   468/468
(100 %)		 0 diff
(100 %id)
DA246750 brain .a 282 to 873 2 to 594   capped   593/593
(100 %)		 1 diff
(99.9 %id)
DA312285 hippocampus .a 349 to 884 2 to 538   capped   537/537
(100 %)		 2 diff
(99.7 %id)
DA331661 hippocampus .a 504 to 1093 2 to 591   capped   590/590
(100 %)		 2 diff
(99.7 %id)
DA362210 subthalamic nucleus .a 293 to 840 2 to 551   capped   550/550
(100 %)		 2 diff
(99.7 %id)
BU102101   .a 3207 to 3431 1 to 226       226/226
(100 %)		 6 diff
(97.4 %id)
BX103635 eye, retina .a 2903 to 3601 1 to 700       700/709
(98 %)		 3 diff
(99.6 %id)
BX647256 endometrium .a 548 to 4522 1 to 3974 K64N S65Q G66D V68S M69* tiling clone, available from DKFZ, AAA   3974/3974
(100 %)		 7 diff
(99.9 %id)
BX648384 human fetal brain .a 1160 to 4522 1 to 3364 S65I G66R L67T V68C M69H ... tiling clone, available from DKFZ, AAA   3364/3364
(100 %)		 4 diff
(99.9 %id)
BX642622   .a 1951 to 2312 1 to 362       362/362
(100 %)		 0 diff
(100 %id)
EG357716 pooled .e-u 1 to 190 1 to 190 S57I tiling clone,   190/190
(100 %)		 1 diff
(99.5 %id)
EL733150 mixed .d 84 to 352 1 to 269       269/724
(37 %)		 0 diff
(100 %id)
DA517313 brain .a 366 to 888 2 to 524   capped   523/523
(100 %)		 1 diff
(99.9 %id)
G65715   .a 4132 to 4476 345 to 1     Submitted on the opposite strand 345/345
(100 %)		 0 diff
(100 %id)
DB485793 hypothalamus .d 1 to 436 2 to 436 exact     436/436
(100 %)		 1 diff
(99.8 %id)
DB489347 hypothalamus .d 1 to 462 2 to 461 H11N A60G     461/461
(100 %)		 10 diff
(97.9 %id)
DB558805 hypothalamus .d 330 to 764 1 to 436     Submitted on the opposite strand 436/436
(100 %)		 1 diff
(99.8 %id)
BP396978 pancreatic islet .a 567 to 1060 494 to 1       494/494
(100 %)		 0 diff
(100 %id)
H38351 eye, retina .a 2912 to 3183 1 to 282       282/282
(100 %)		 14 diff
(95.1 %id)
H40625 eye, retina .a 4073 to 4471 401 to 1       401/409
(98 %)		 10 diff
(97.6 %id)
H86542 eye, retina .a 4197 to 4498 305 to 1       305/305
(100 %)		 7 diff
(97.8 %id)
H86630 eye, retina .a 2902 to 3234 1 to 336       336/336
(100 %)		 4 diff
(98.9 %id)
AA012930 eye, retina .a 4272 to 4522 251 to 1       251/251
(100 %)		 2 diff
(99.3 %id)
AA013016 eye, retina .a 2903 to 3404 1 to 502       502/502
(100 %)		 3 diff
(99.5 %id)
AA017464 eye, retina .a 2903 to 3041 1 to 139       139/139
(100 %)		 0 diff
(100 %id)
AA017245 eye, retina .a 4092 to 4522 433 to 1       433/433
(100 %)		 2 diff
(99.6 %id)
AA017281 eye, retina .a 2903 to 3364 1 to 477       477/479
(99 %)		 18 diff
(96.3 %id)
AA017202 eye, retina .a 2903 to 3290 1 to 388       388/468
(82 %)		 1 diff
(99.8 %id)
AA017254 eye, retina .a 4110 to 4522 414 to 1       414/414
(100 %)		 2 diff
(99.6 %id)
AA019333 eye, retina .a 4262 to 4522 262 to 1       262/262
(100 %)		 2 diff
(99.3 %id)
AA019404 eye, retina .a 2903 to 3064 1 to 162       162/164
(98 %)		 2 diff
(98.8 %id)
AA774038   .a 4145 to 4522 378 to 1       378/378
(100 %)		 1 diff
(99.8 %id)
AW614960 carcinoid, lung .a 1742 to 2061 321 to 1       321/321
(100 %)		 2 diff
(99.4 %id)
BE967329 brain .a 3805 to 4361 1 to 555       555/559
(99 %)		 5 diff
(99.2 %id)
BG708366 brain, hypothalamus .d 1 to 764 7 to 774 exact tiling clone, AAA   774/774
(100 %)		 13 diff
(98.4 %id)
BG708951 brain, hypothalamus .d 1 to 764 7 to 773 exact AAA   773/773
(100 %)		 10 diff
(98.8 %id)
BQ776358 Pancreas, Purified pancreatic islet .a 829 to 1330 1 to 502       502/502
(100 %)		 4 diff
(99.3 %id)
BQ778445 Pancreas, Purified pancreatic islet .a 1608 to 2063 456 to 1       456/456
(100 %)		 0 diff
(100 %id)
BM966965 Islets of Langerhans, Pancreas .a 370 to 931 1 to 562       562/562
(100 %)		 1 diff
(99.9 %id)
BM893787 Islets of Langerhans, Pancreas .a 1485 to 2060 576 to 1       576/576
(100 %)		 0 diff
(100 %id)
BM967078 Islets of Langerhans, Pancreas .a 692 to 1242 1 to 551       551/551
(100 %)		 1 diff
(99.9 %id)
CK823401 Islets of Langerhans, Pancreas .a 1459 to 2060 602 to 1       602/602
(100 %)		 0 diff
(100 %id)
CK823402 Islets of Langerhans, Pancreas .a 692 to 1291 1 to 600       600/600
(100 %)		 1 diff
(99.9 %id)
NM_152774.3   .a 1160 to 4522 1 to 3363 exact RefSeq, AAA   3363/3363
(100 %)		 0 diff
(100 %id)
DA690137   .a 339 to 877 2 to 540   capped   539/539
(100 %)		 0 diff
(100 %id)
DA755027   .a 293 to 833 2 to 542   capped   541/541
(100 %)		 0 diff
(100 %id)
TI_1948238212   .a 1449 to 1703 869 to 615     Submitted on the opposite strand 255/1190
(21 %)		 0 diff
(100 %id)
TI_1948238213   .a 1449 to 1703 859 to 606     Submitted on the opposite strand 254/1106
(22 %)		 0 diff
(100 %id)
TI_1948238435   .a 1474 to 1703 856 to 621     Submitted on the opposite strand 236/1227
(19 %)		 0 diff
(100 %id)
TI_1948238912   .a 1449 to 1703 873 to 619     Submitted on the opposite strand 255/1258
(20 %)		 0 diff
(100 %id)
DA995288 synovial membrane tissue from rheumatioidarthritis .a 558 to 1101 2 to 545   capped   544/544
(100 %)		 0 diff
(100 %id)
DN991960 brain, whole brain .a 1390 to 1950 12 to 572   tiling clone,   562/572
(98 %)		 6 diff
(99.0 %id)
DB180861 kidney, tumor tissue .a 240 to 807 2 to 571   capped   570/570
(100 %)		 3 diff
(99.5 %id)
TI_151710253   .a 3962 to 4522 650 to 88   AAA   563/809
(69 %)		 12 diff
(98.6 %id)
DB256792 uterus .c-u 1 to 485 2 to 487 D45* tiling clone, capped   486/486
(100 %)		 1 diff
(99.8 %id)
DB351444 uterus .c-u 2679 to 2915 237 to 1   tiling clone,   237/237
(100 %)		 0 diff
(100 %id)
BQ778445 Pancreas, Purified pancreatic islet .a 1608 to 2063 456 to 1       456/456
(100 %)		 0 diff
(100 %id)
BM966965 Islets of Langerhans, Pancreas .a 370 to 931 1 to 562       562/562
(100 %)		 1 diff
(99.9 %id)
BM966965 IMAGE:6136098 TMEM196.aAug10 931 562 IMAGE:6136098     562 1
BM893787 IMAGE:6136256 TMEM196.aAug10 2060 1 IMAGE:6136256     576 0
BM893787 IMAGE:6136256 TMEM196.aAug10 2060 1 IMAGE:6136256     576 0
BM967078 IMAGE:6136256__1 TMEM196.aAug10 1242 551 IMAGE:6136256__1     551 1
BM967078 IMAGE:6136256__1 TMEM196.aAug10 1242 551 IMAGE:6136256__1     551 1
CK823401 IMAGE:6136256__2 TMEM196.aAug10 2060 1 IMAGE:6136256__2     602 0
CK823401 IMAGE:6136256__2 TMEM196.aAug10 2060 1 IMAGE:6136256__2     602 0
CK823402 IMAGE:6136256__3 TMEM196.aAug10 1291 600 IMAGE:6136256__3     600 1
CK823402 IMAGE:6136256__3 TMEM196.aAug10 1291 600 IMAGE:6136256__3     600 1
NM_152774.3 NM_152774 TMEM196.aAug10 4522 3363 NM_152774     3363 0
DA690137 NT2NE2009469 TMEM196.aAug10 877 540 NT2NE2009469     539 0
DA755027 NT2RP8001222 TMEM196.aAug10 833 542 NT2RP8001222     541 0
TI_1948238212 SC_31039_1_E12 TMEM196.aAug10 1703 615 SC_31039_1_E12 Inverted   255 0
TI_1948238213 SC_31039_1_E12__1 TMEM196.aAug10 1703 606 SC_31039_1_E12__1 Inverted   254 0
TI_1948238435 SC_31039_2_E12 TMEM196.aAug10 1703 621 SC_31039_2_E12 Inverted   236 0
TI_1948238912 SC_31039_4_E12 TMEM196.aAug10 1703 619 SC_31039_4_E12 Inverted   255 0
DA995288 SYNOV4008347 TMEM196.aAug10 1101 545 SYNOV4008347     544 0
DN991960 TC100812 TMEM196.aAug10 1950 572 TC100812     562 6
DN991960 TC100812 TMEM196.aAug10 1950 572 TC100812     562 6
DB180861 TKIDN2018914 TMEM196.aAug10 807 571 TKIDN2018914     570 3
TI_151710253 UIACBCB_UI-E-DX0-ago-p-12-0-UI TMEM196.aAug10 4522 88 UIACBCB_UI-E-DX0-ago-p-12-0-UI     563 12
DB256792 UTERU2012666 TMEM196.cAug10-unspliced 485 487 UTERU2012666     486 1
DB351444 UTERU2012666 TMEM196.cAug10-unspliced 2915 1 UTERU2012666     237 0
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC