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Gene TMEFF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
165 supporting clones for gene TMEFF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK054646   .a 1 to 1945 1 to 1945   tiling clone, available from FLJ,   1945/1945
(100 %)
5 diff
(99.8 %id)
DA080136 cerebellum .a 397 to 962 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA068732 cerebellum .a 730 to 1297 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA617509   .a 763 to 1338 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BP365060 lung .a 764 to 1345 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA254356 caudate nucleus .a 765 to 1338 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA256519 caudate nucleus .a 765 to 1285 2 to 523   capped   522/522
(100 %)
2 diff
(99.7 %id)
DA183881 amygdala .a 773 to 970 2 to 200   capped   199/199
(100 %)
2 diff
(99.0 %id)
DA512907 brain .a 774 to 1246 2 to 476   capped   475/475
(100 %)
3 diff
(99.4 %id)
BI458414 brain, hypothalamus .a 774 to 1535 7 to 769       763/769
(99 %)
2 diff
(99.8 %id)
BI597518 brain, hypothalamus .a 774 to 1598 7 to 840       834/840
(99 %)
32 diff
(96.2 %id)
BI602795 brain, hypothalamus .a 774 to 1378 7 to 611       605/613
(98 %)
1 diff
(99.9 %id)
TI_45212413   .a 774 to 1473 93 to 797       705/926
(76 %)
12 diff
(98.8 %id)
TI_45212508   .a 774 to 1378 90 to 694       605/696
(86 %)
7 diff
(99.0 %id)
DA395551 thalamus .a 775 to 1354 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AK222691 brain .a 776 to 2602 1 to 1827 M28V M222T L339H AAA   1827/1827
(100 %)
8 diff
(99.6 %id)
BI458065 brain, hypothalamus .a 779 to 1567 1 to 802       802/1074
(74 %)
24 diff
(97.8 %id)
AF242222 brain .a 781 to 2602 1 to 1822 exact AAA   1822/1822
(100 %)
0 diff
(100 %id)
AK315376 amygdala .a 781 to 2314 1 to 1535 C345Y     1535/1535
(100 %)
2 diff
(99.9 %id)
DB467440 hippocampus .a 781 to 1247 1 to 465       465/465
(100 %)
6 diff
(98.8 %id)
DB479567 hippocampus .a 781 to 1036 1 to 257       257/277
(92 %)
6 diff
(97.9 %id)
BI550793 brain, hippocampus .a 781 to 1504 1 to 723       723/723
(100 %)
3 diff
(99.6 %id)
AU309535 neuroblastoma .a 781 to 1362 1 to 576       576/582
(98 %)
10 diff
(98.3 %id)
BP361764 thalamus .a 781 to 1362 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA082353 cerebellum .a 782 to 1352 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA132914 alzheimer cortex .a 782 to 1285 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DA187704 amygdala .a 782 to 1239 2 to 465   capped   464/464
(100 %)
8 diff
(98.3 %id)
DA257871 caudate nucleus .a 782 to 1332 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA268922 caudate nucleus .a 782 to 1340 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA269385 caudate nucleus .a 782 to 1330 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DA269895 caudate nucleus .a 782 to 1344 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA398007 thalamus .a 782 to 1332 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA710363   .a 782 to 1346 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
DB172487 kidney, tumor tissue .a 782 to 1341 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA252962 caudate nucleus .a 784 to 1319 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA367216 subthalamic nucleus .a 784 to 1307 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DB484258 hypothalamus .a 784 to 1221 1 to 438       438/438
(100 %)
4 diff
(99.1 %id)
BP348598 brain .a 784 to 1363 1 to 580       580/582
(99 %)
1 diff
(99.9 %id)
BP211424 cerebrum .a 786 to 1365 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP310271 brain .a 786 to 1363 1 to 577       577/582
(99 %)
3 diff
(99.5 %id)
DA075005 cerebellum .a 787 to 1363 2 to 578   capped   577/580
(99 %)
2 diff
(99.7 %id)
DA081839 cerebellum .a 787 to 1283 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA146542 amygdala .a 787 to 1295 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
DA148240 amygdala .a 787 to 1352 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA203020 brain .a 787 to 1361 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA255195 caudate nucleus .a 787 to 1342 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA283435 corpus callosum .a 787 to 1327 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA341476 substantia nigra .a 787 to 1347 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA527219 brain .a 787 to 1361 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA865429 Prostate .a 787 to 1283 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA206455 brain .a 788 to 1319 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BI548498 brain, hippocampus .a 790 to 1537 1 to 751       751/751
(100 %)
9 diff
(98.9 %id)
BI600309 brain, hypothalamus .a 792 to 1567 1 to 776       776/776
(100 %)
4 diff
(99.5 %id)
H05869 whole brain .a 793 to 1195 1 to 407       407/414
(98 %)
19 diff
(95.5 %id)
TI_45215299   .a 793 to 1567 119 to 893       775/893
(86 %)
8 diff
(99.2 %id)
AL528147 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 794 to 1628 1 to 835   fully sequenced,   835/835
(100 %)
2 diff
(99.8 %id)
BI822104 pooled brain, lung, testis .a 794 to 1537 1 to 745       745/745
(100 %)
3 diff
(99.6 %id)
TI_57201858   .a 794 to 1537 69 to 813       745/813
(91 %)
8 diff
(99.1 %id)
Z45279 brain, total brain .a 795 to 1075 1 to 280       280/280
(100 %)
10 diff
(96.5 %id)
TI_44168538   .a 795 to 1537 91 to 836       746/836
(89 %)
11 diff
(98.7 %id)
AF179274 prostate carcinoma xenograft TEN12 .a 796 to 2608 1 to 1813 exact tiling clone,   1813/1814
(99 %)
1 diff
(100.0 %id)
DA154908 amygdala .a 796 to 1385 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA259743 caudate nucleus .a 796 to 1358 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA278308 corpus callosum .a 796 to 1319 2 to 526   capped   525/525
(100 %)
4 diff
(99.3 %id)
DB462998 hippocampus .a 796 to 1264 1 to 469       469/471
(99 %)
16 diff
(96.7 %id)
DB479106 hippocampus .a 796 to 1300 1 to 505       505/505
(100 %)
3 diff
(99.5 %id)
NM_016192.2   .a 796 to 2609 1 to 1814 exact RefSeq,   1814/1814
(100 %)
1 diff
(100.0 %id)
BP199552 brain .a 798 to 1381 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AK074632 whole embryo, mainly body .a 798 to 2543 1 to 1746 D292N available from FLJ,   1746/1746
(100 %)
1 diff
(100.0 %id)
DB483239 hippocampus .a 798 to 1255 1 to 458       458/458
(100 %)
2 diff
(99.6 %id)
DB484040 hippocampus .a 798 to 1293 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
BP328097 prostata .a 798 to 1377 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA358038 subthalamic nucleus .a 799 to 1368 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA572884 whole embryo, mainly body .a 799 to 1542 2 to 747   capped   744/746
(99 %)
3 diff
(99.6 %id)
DA778676 brain .a 799 to 1371 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
AL532850 adult brain, brain .a 814 to 1628 1 to 814   fully sequenced,   814/814
(100 %)
2 diff
(99.8 %id)
AY358907   .a 815 to 2602 1 to 1788 exact     1788/1788
(100 %)
0 diff
(100 %id)
AB017269 brain .a 822 to 2543 1 to 1721 exact     1721/1721
(100 %)
1 diff
(100.0 %id)
BC008973 Brain, anaplastic oligodendroglioma with1p/19q loss .a 840 to 2543 1 to 1704 exact available from MGC, AAA   1704/1704
(100 %)
0 diff
(100 %id)
R11739.
matches multiple genes
whole brain .a 994 to 1162 1 to 168     also hits gene DFNA5 168/173
(97 %)
5 diff
(97.2 %id)
AB004064   .a 1112 to 2270 1 to 1159       1159/1627
(71 %)
1 diff
(100.0 %id)
AK074507 whole embryo, mainly head .a 1167 to 2602 1 to 1436 E63G available from FLJ,   1436/1436
(100 %)
1 diff
(100.0 %id)
DA568609 whole embryo, mainly head .a 1168 to 2050 2 to 886   capped   885/894
(98 %)
5 diff
(99.5 %id)
CA488825   .a 1396 to 2285 1 to 893       893/895
(99 %)
10 diff
(98.9 %id)
AL528146 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1627 to 2514 888 to 1   fully sequenced,   888/888
(100 %)
0 diff
(100 %id)
AL564899 adult brain, brain .a 1627 to 2507 884 to 1   fully sequenced,   884/884
(100 %)
24 diff
(97.3 %id)
N49148 multiple sclerosis lesions .a 1666 to 1939 1 to 275       275/275
(100 %)
1 diff
(99.7 %id)
TI_57239309   .a 1739 to 2509 67 to 835       769/835
(92 %)
8 diff
(99.1 %id)
BI915436 brain .a 1741 to 2509 1 to 767       767/767
(100 %)
4 diff
(99.5 %id)
BQ333325 pnet .a 1767 to 2267 81 to 579       499/604
(82 %)
23 diff
(96.2 %id)
AI620217 Prostate .a 1791 to 2545 753 to 1       753/753
(100 %)
11 diff
(98.6 %id)
AA234584 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1902 to 2260 1 to 359   fully sequenced,   359/359
(100 %)
1 diff
(99.8 %id)
BQ925396 sciatic nerve .a 1942 to 2588 24 to 675       652/949
(68 %)
22 diff
(97.7 %id)
AI056665   .a 1960 to 2544 587 to 3       585/587
(99 %)
0 diff
(100 %id)
DB359985 whole embryo, mainly body .a 1969 to 2543 573 to 1       573/573
(100 %)
5 diff
(99.2 %id)
AA297549 brain .a 1974 to 2287 1 to 314       314/314
(100 %)
0 diff
(100 %id)
AW964795   .a 1975 to 2543 1 to 569   AAA   569/569
(100 %)
7 diff
(98.8 %id)
AI744518 pooled .a 1976 to 2547 573 to 2       572/573
(99 %)
0 diff
(100 %id)
AI038199   .a 1991 to 2544 556 to 3       554/556
(99 %)
1 diff
(99.9 %id)
H19150 brain .a 2024 to 2536 1 to 523       523/532
(98 %)
25 diff
(95.4 %id)
DB355139 whole embryo, mainly head .a 2058 to 2602 546 to 1       546/549
(99 %)
13 diff
(97.7 %id)
DB552140 hippocampus .a 2081 to 2543 1 to 463     Submitted on the opposite strand 463/463
(100 %)
2 diff
(99.6 %id)
AI368718   .a 2081 to 2547 472 to 6       467/472
(98 %)
8 diff
(98.4 %id)
N47941 multiple sclerosis lesions .a 2082 to 2543 466 to 1       466/466
(100 %)
4 diff
(99.2 %id)
AA747220 Ewing's sarcoma .a 2085 to 2577 1 to 493       493/493
(100 %)
6 diff
(98.8 %id)
DB528703 hippocampus .a 2087 to 2543 1 to 457     Submitted on the opposite strand 457/458
(99 %)
6 diff
(98.7 %id)
AI888960 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2091 to 2547 458 to 3       456/465
(98 %)
6 diff
(98.8 %id)
DB545053 hippocampus .a 2096 to 2548 1 to 453     Submitted on the opposite strand 453/453
(100 %)
0 diff
(100 %id)
BX094934 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2098 to 2543 460 to 15   AAA   446/446
(100 %)
0 diff
(100 %id)
DB547780 hippocampus .a 2110 to 2543 1 to 434     Submitted on the opposite strand 434/435
(99 %)
1 diff
(99.8 %id)
DB534446 hippocampus .a 2122 to 2543 1 to 421     Submitted on the opposite strand 421/422
(99 %)
4 diff
(99.1 %id)
DB548277 hippocampus .a 2123 to 2543 1 to 422     Submitted on the opposite strand 422/423
(99 %)
2 diff
(99.6 %id)
AI468582 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2180 to 2541 364 to 3       362/364
(99 %)
0 diff
(100 %id)
R52959 whole brain .a 2181 to 2547 376 to 5       372/385
(96 %)
3 diff
(99.3 %id)
H05762 whole brain .a 2217 to 2602 411 to 16   AAA   396/431
(91 %)
12 diff
(97.3 %id)
AA236476 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2230 to 2602 387 to 15   fully sequenced, AAA   373/373
(100 %)
0 diff
(100 %id)
Z40989 brain, total brain .a 2339 to 2543 205 to 1       205/205
(100 %)
0 diff
(100 %id)
DB329403 Prostate .a 3074 to 3576 503 to 1   tiling clone,   503/503
(100 %)
0 diff
(100 %id)
DB553204 hypothalamus .a 3145 to 3574 1 to 430     Submitted on the opposite strand 430/432
(99 %)
1 diff
(99.8 %id)
BF475619 Prostate .a 3148 to 3582 437 to 3   tiling clone,   435/437
(99 %)
0 diff
(100 %id)
H18483 brain .a 3282 to 3577 296 to 1       296/296
(100 %)
1 diff
(99.7 %id)
AL157430 brain .b 1 to 2836 1 to 2836 exact tiling clone, available from DKFZ, AAA   2836/2836
(100 %)
1 diff
(100.0 %id)
DN989326 brain, whole brain .b 7 to 694 1 to 686       686/688
(99 %)
5 diff
(99.3 %id)
BM468987 duodenal adenocarcinoma, cell line, small intestine .b 13 to 676 1 to 670       670/956
(70 %)
14 diff
(98.6 %id)
BF346739 anaplastic oligodendroglioma with 1p/19qloss, brain .b 14 to 781 3 to 775       773/898
(86 %)
37 diff
(95.9 %id)
T27101   .b 14 to 283 1 to 270       270/270
(100 %)
4 diff
(98.6 %id)
TI_57198049   .b 15 to 731 60 to 779       718/779
(92 %)
22 diff
(97.2 %id)
BI824537 pooled brain, lung, testis .b 19 to 731 1 to 716       716/716
(100 %)
22 diff
(97.0 %id)
BF528248 anaplastic oligodendroglioma with 1p/19qloss, brain .b 43 to 703 1 to 663       663/663
(100 %)
2 diff
(99.7 %id)
BI754018 brain .b 43 to 790 1 to 746       746/746
(100 %)
4 diff
(99.5 %id)
BQ718707 sympathetic trunk .b 45 to 804 1 to 761       761/952
(79 %)
6 diff
(99.4 %id)
TI_57218897   .b 46 to 790 35 to 777       743/777
(95 %)
6 diff
(99.3 %id)
BP209172 cerebellum .b 218 to 796 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
TI_57220605   .b 262 to 930 26 to 695       670/774
(86 %)
9 diff
(98.9 %id)
BI757477 brain .b 268 to 930 1 to 663       663/742
(89 %)
4 diff
(99.5 %id)
BQ303715 breast .b 386 to 704 18 to 336       319/336
(94 %)
7 diff
(98.0 %id)
CR457390   .b 393 to 1432 1 to 1040       1040/1041
(99 %)
2 diff
(99.9 %id)
CA395881 eye, RPE/choroid .b 503 to 1156 1 to 654       654/654
(100 %)
0 diff
(100 %id)
AA535462 invasive prostate tumor, Prostate .b 659 to 893 1 to 235       235/235
(100 %)
0 diff
(100 %id)
DA183002 amygdala .b 673 to 1237 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA277570 corpus callosum .b 675 to 860 2 to 188   capped   187/187
(100 %)
1 diff
(99.5 %id)
EC532319 Prostate .b 831 to 919 106 to 20       87/106
(82 %)
0 diff
(100 %id)
EC451373 Prostate .b 1420 to 1529 1 to 110       110/112
(98 %)
2 diff
(98.3 %id)
BF445507 Prostate .b 1462 to 1863 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AI682413 Prostate .b 1473 to 1864 392 to 1       392/392
(100 %)
5 diff
(98.8 %id)
AI360711 brain, glioblastoma (pooled) .b 1476 to 1865 390 to 1       390/408
(95 %)
7 diff
(98.3 %id)
AA736703 Ewing's sarcoma .b 1489 to 1777 324 to 35       290/328
(88 %)
0 diff
(100 %id)
T27100   .b 1504 to 1803 300 to 1       300/300
(100 %)
1 diff
(99.7 %id)
EC505268 Prostate .b 1564 to 1666 1 to 102       102/102
(100 %)
1 diff
(99.1 %id)
EC449881 Prostate .b 1566 to 1666 1 to 99       99/99
(100 %)
5 diff
(95.0 %id)
EC448302 Prostate .b 1591 to 1690 1 to 100       100/100
(100 %)
2 diff
(98.0 %id)
EC491349 Prostate .b 1599 to 1690 7 to 97       91/97
(93 %)
3 diff
(97.0 %id)
EC471056 Prostate .b 1600 to 1680 15 to 95       81/96
(84 %)
1 diff
(99.0 %id)
AA579494   .b 1640 to 1862 252 to 30   AAA   223/223
(100 %)
2 diff
(99.2 %id)
BE855666 brain, glioblastoma (pooled) .b 1644 to 1860 218 to 1       218/218
(100 %)
1 diff
(99.6 %id)
AI474169 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1665 to 1862 212 to 15   AAA   198/198
(100 %)
1 diff
(99.5 %id)
R41378 whole brain .b 1684 to 1862 206 to 27   AAA   180/180
(100 %)
1 diff
(99.5 %id)
EC562217 Prostate .b 1695 to 1798 103 to 1       103/103
(100 %)
1 diff
(99.1 %id)
EC529524 Prostate .b 1706 to 1802 1 to 94       94/96
(97 %)
4 diff
(95.9 %id)
EC506779 Prostate .b 1715 to 1807 1 to 91       91/91
(100 %)
5 diff
(94.6 %id)
EC471543 Prostate .b 1716 to 1806 1 to 92       92/92
(100 %)
2 diff
(97.9 %id)
EC457001 Prostate .b 1718 to 1802 1 to 83       83/86
(96 %)
4 diff
(95.4 %id)
EC558503 Prostate .b 1719 to 1802 1 to 84       84/87
(96 %)
1 diff
(98.9 %id)
BF982162 duodenal adenocarcinoma, cell line, small intestine .c 1 to 638 1 to 639 K161T I162N E163* tiling clone,   639/642
(99 %)
2 diff
(99.7 %id)
BX441405 brain, fetal brain .d 1 to 826 1 to 825   tiling clone,   825/825
(100 %)
2 diff
(99.8 %id)
DQ133599   .d 388 to 3751 1 to 3362 exact tiling clone,   3362/3362
(100 %)
2 diff
(100.0 %id)
DQ668381   .d 3522 to 3845 324 to 1   tiling clone, Submitted on the opposite strand 324/324
(100 %)
1 diff
(99.7 %id)
AW973144   .e 1 to 451 247 to 698 N116Y H126P C137W M138L C142V ... tiling clone,   452/698
(64 %)
8 diff
(98.9 %id)
BF371877 prostate_tumor .e 1 to 245 134 to 378       245/378
(64 %)
0 diff
(100 %id)
BF371928 prostate_tumor .e 1 to 293 139 to 431       293/431
(67 %)
2 diff
(99.6 %id)
BG185683   .f 1 to 278 1 to 278 K29R M59T tiling clone,   278/280
(99 %)
3 diff
(99.0 %id)
EL949457 eyeball .g-u 1 to 490 37 to 527   tiling clone,   491/527
(93 %)
10 diff
(98.2 %id)
N47184 multiple sclerosis lesions .g-u 222 to 421 1 to 200   tiling clone,   200/200
(100 %)
1 diff
(99.5 %id)
N46864 multiple sclerosis lesions .g-u 477 to 982 504 to 1 F19V R20Q Q21T Y22I N23Q ... tiling clone,   504/504
(100 %)
8 diff
(98.5 %id)
DB295892   Gene TMEFF2, variant not shown         This clone was ignored    
DA038935   Gene TMEFF2, variant not shown       capped This clone was ignored    
DB476283 hippocampus Gene TMEFF2, variant not shown         Suspected internal deletion, this clone was ignored    
BG702505 brain, hippocampus Gene TMEFF2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC