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Gene TIMD4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
41 supporting clones for gene TIMD4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC008988 Brain, glioblastoma with EGFR amplification .a 1 to 1291 1 to 1291 V240A tiling clone, available from MGC, AAA   1291/1291
(100 %)
1 diff
(100.0 %id)
NM_138379.2   .a 1 to 1374 1 to 1374 exact RefSeq,   1374/1374
(100 %)
4 diff
(99.8 %id)
AK312746 Spleen .a 30 to 1194 1 to 1164 D57T Q58S C59A Y61T S62P ...     1164/1164
(100 %)
3 diff
(99.8 %id)
TI_1948076860   .a 52 to 658 136 to 744   fully sequenced, AAA   609/744
(81 %)
16 diff
(97.9 %id)
TI_1948077199   .a 52 to 767 129 to 844   fully sequenced, AAA   716/844
(84 %)
5 diff
(99.5 %id)
TI_1948077368   .a 52 to 767 134 to 849   fully sequenced, AAA   716/849
(84 %)
6 diff
(99.3 %id)
BQ182903 Knee, Osteoarthritic Cartilage .a 508 to 1276 784 to 17   AAA   768/768
(100 %)
3 diff
(99.7 %id)
TI_1948076861   .a 628 to 1193 691 to 121   fully sequenced,   571/691
(82 %)
28 diff
(96.0 %id)
TI_1948077200   .a 706 to 1193 614 to 127   fully sequenced,   488/614
(79 %)
1 diff
(99.9 %id)
TI_1948077369   .a 706 to 1193 613 to 126   fully sequenced,   488/613
(79 %)
1 diff
(99.9 %id)
H52956 liver and spleen .a 710 to 1122 1 to 419       419/419
(100 %)
13 diff
(96.9 %id)
H53024 liver and spleen .a 710 to 1058 1 to 353   fully sequenced,   351/351
(100 %)
8 diff
(97.8 %id)
AI862534 2 pooled tumors (clear cell type), Kidney .a 779 to 1292 517 to 4       514/517
(99 %)
0 diff
(100 %id)
H53025 liver and spleen .a 1028 to 1275 251 to 1   fully sequenced,   251/251
(100 %)
0 diff
(100 %id)
BF338867 brain, glioblastoma with EGFR amplification .b 1 to 736 1 to 728   tiling clone,   728/954
(76 %)
16 diff
(98.4 %id)
NM_001146726.1   .b 1 to 1290 1 to 1290 exact RefSeq,   1290/1290
(100 %)
4 diff
(99.7 %id)
AK301337 synovial membrane tissue from rheumatoidarthritis .b 30 to 1178 1 to 1149 A67T V240A     1149/1149
(100 %)
2 diff
(99.9 %id)
DA972607 synovial membrane tissue from rheumatioidarthritis .b 31 to 591 2 to 563   capped   560/562
(99 %)
2 diff
(99.7 %id)
DA979473 synovial membrane tissue from rheumatioidarthritis .b 31 to 605 2 to 579   capped   578/580
(99 %)
5 diff
(99.2 %id)
DB109275 thymus .b 31 to 602 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB115166 thymus .b 31 to 574 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BX448841 fetal liver, Liver .b 33 to 1097 1 to 1052   fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1055/1055
(100 %)
48 diff
(95.5 %id)
CR603034 fetal liver .b 34 to 1178 1 to 1145 exact tiling clone,   1145/1145
(100 %)
0 diff
(100 %id)
CV025192 mixed .b 58 to 656 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BX448840 fetal liver, Liver .b 787 to 1113 395 to 68   fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 328/395
(83 %)
3 diff
(99.3 %id)
AI218853 pooled .b 847 to 1208 362 to 1       362/362
(100 %)
0 diff
(100 %id)
AW274868 pooled germ cell tumors .b 862 to 1211 351 to 2       350/351
(99 %)
0 diff
(100 %id)
BE552351 pooled germ cell tumors .b 862 to 1211 350 to 1       350/350
(100 %)
0 diff
(100 %id)
BE550640 pooled germ cell tumors .b 862 to 1211 362 to 13   AAA   350/350
(100 %)
0 diff
(100 %id)
AI476417 pooled .b 865 to 1208 351 to 8       344/351
(98 %)
0 diff
(100 %id)
AA843555   .b 897 to 1285 394 to 6   tiling clone,   389/394
(98 %)
0 diff
(100 %id)
AA936598 pooled .b 902 to 1272 371 to 2       370/371
(99 %)
1 diff
(99.8 %id)
AW516351 lymph node, lymphoma, follicular mixed small and largecell .b 922 to 1275 354 to 1       354/354
(100 %)
0 diff
(100 %id)
AW292593   .b 1030 to 1271 262 to 21       242/262
(92 %)
0 diff
(100 %id)
AA629002   .b 1097 to 1208 115 to 4       112/115
(97 %)
0 diff
(100 %id)
BU958106 mixed (pool of 40 RNAs) .c 1 to 376 7 to 382 exact tiling clone,   382/418
(91 %)
3 diff
(99.3 %id)
AK131025 testis .d 1 to 554 1 to 554 exact available from FLJ,   554/554
(100 %)
0 diff
(100 %id)
BP371340 testis .d 1 to 554 1 to 554 exact tiling clone, AAA   554/554
(100 %)
0 diff
(100 %id)
AA400536   .d 43 to 532 1 to 490 exact fully sequenced,   490/490
(100 %)
0 diff
(100 %id)
BX439191.
matches multiple genes
placenta .d 46 to 542 1 to 497 exact   also hits gene MPP1 497/497
(100 %)
0 diff
(100 %id)
AL079514 testis .d 57 to 273 129 to 345       217/346
(62 %)
8 diff
(97.7 %id)
AI149724   .d 61 to 534 495 to 22 exact AAA   474/475
(99 %)
0 diff
(100 %id)
AA759080   .d 96 to 559 466 to 3 L25V T45N Y46L C47L S48F ...     464/469
(98 %)
6 diff
(98.8 %id)
AA861640   .d 108 to 549 459 to 18 exact AAA   442/442
(100 %)
0 diff
(100 %id)
AA400490   .d 129 to 557 432 to 4 exact fully sequenced,   429/432
(99 %)
0 diff
(100 %id)
AL079515 testis .d 299 to 549 266 to 17   AAA   250/250
(100 %)
1 diff
(99.6 %id)
BX281207 2 pooled tumors (clear cell type), Kidney Gene TIMD4, variant not shown         Suspected internal deletion, this clone was ignored    
DA932159.
matches multiple genes
Spleen Gene TIMD4, variant not shown       capped This clone was ignored, also hits gene someyu    
DA932159.
matches multiple genes
Spleen Gene someyu, variant not shown       capped This clone was ignored, also hits gene someyu    
DB332561.
matches multiple genes
Spleen Gene TIMD4, variant not shown         This clone was ignored, also hits gene someyu    
DB332561.
matches multiple genes
Spleen Gene someyu, variant not shown         This clone was ignored, also hits gene someyu    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC