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Gene THRAP3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
589 supporting clones for gene THRAP3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AV763248 bone marrow .a 1 to 429 1 to 428   tiling clone,   428/428
(100 %)
6 diff
(98.6 %id)
BC112350 PCR rescued clones .a 23 to 3339 1 to 3317 exact tiling clone,   3317/3317
(100 %)
1 diff
(100.0 %id)
DA209931 brain .a 38 to 579 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
BG572651 placenta .b 1 to 813 1 to 816   tiling clone,   816/819
(99 %)
10 diff
(98.8 %id)
NM_005119.3   .b 2 to 4430 1 to 4429 exact RefSeq, AAA   4429/4429
(100 %)
0 diff
(100 %id)
BP217636 caudate nucleus .b 6 to 586 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BU959527 mixed (pool of 40 RNAs) .b 12 to 659 1 to 652       652/737
(88 %)
7 diff
(99.1 %id)
CK001330 brain/CNS, Bulk tissue from Human Spinal cord .b 12 to 658 1 to 642       642/643
(99 %)
10 diff
(98.5 %id)
BP284027 bone marrow .b 13 to 595 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP283814 bone marrow .b 15 to 601 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BP284174 bone marrow .b 15 to 606 1 to 592       592/592
(100 %)
0 diff
(100 %id)
BP360521 thalamus .b 15 to 596 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA319198 hippocampus .b 16 to 570 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA791107 brain .b 16 to 591 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA856506 placenta .b 16 to 577 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA976446 synovial membrane tissue from rheumatioidarthritis .b 16 to 573 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CD685307 normal nasopharynx .b 17 to 466 32 to 481       450/481
(93 %)
10 diff
(98.0 %id)
BP229415 brain .b 17 to 601 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BP237232 coronary artery .b 17 to 598 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP253778 Kidney .b 17 to 598 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA681589 ovary .b 18 to 498 2 to 482   capped   481/481
(100 %)
1 diff
(99.8 %id)
CD687212 normal nasopharynx .b 19 to 408 5 to 394       390/394
(98 %)
13 diff
(96.8 %id)
CD697817 normal nasopharynx .b 19 to 449 34 to 465       432/465
(92 %)
8 diff
(98.3 %id)
BP229410 brain .b 20 to 601 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP311128 brain .b 20 to 607 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
BP315053 mammary gland .b 20 to 602 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP352791   .b 20 to 602 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BU663142 blood .b 21 to 590 1 to 570       570/570
(100 %)
4 diff
(99.3 %id)
BG615950 embryonal carcinoma, testis .b 21 to 813 1 to 798       798/798
(100 %)
13 diff
(98.4 %id)
CD685540 normal nasopharynx .b 23 to 369 16 to 364       349/366
(95 %)
13 diff
(96.5 %id)
AF117756   .b 24 to 3632 1 to 3610 A201V     3610/3618
(99 %)
6 diff
(99.9 %id)
AJ706906 heart .b 24 to 501 480 to 4     Submitted on the opposite strand 477/487
(97 %)
1 diff
(99.8 %id)
CD688474 normal nasopharynx .b 24 to 476 18 to 472       455/472
(96 %)
16 diff
(96.7 %id)
CD703109 normal nasopharynx .b 24 to 440 15 to 432       418/432
(96 %)
9 diff
(98.0 %id)
BE747497 adenocarcinoma cell line, ovary .b 24 to 902 15 to 891   available from MGC,   877/949
(92 %)
19 diff
(98.0 %id)
CN425396 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 25 to 491 1 to 467       467/467
(100 %)
1 diff
(99.8 %id)
FN135923 breast carcinoma .b 25 to 97 1 to 72       72/73
(98 %)
6 diff
(91.8 %id)
CB957820 Pooled-Glandular .b 25 to 804 1 to 781       781/782
(99 %)
10 diff
(98.8 %id)
BC065519 Lymph, lymphoma .b 26 to 1329 1 to 1304   available from MGC, AAA   1304/1304
(100 %)
1 diff
(100.0 %id)
DR003361 fetal brain .b 26 to 618 1 to 593       593/593
(100 %)
4 diff
(99.4 %id)
CD704756 normal nasopharynx .b 27 to 641 36 to 652       617/652
(94 %)
12 diff
(98.2 %id)
BG940950 blood .b 28 to 398 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
CN425400 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 28 to 760 11 to 743       733/743
(98 %)
7 diff
(99.1 %id)
BG613554 embryonal carcinoma, testis .b 28 to 704 1 to 679       679/679
(100 %)
14 diff
(98.0 %id)
CN425399 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 29 to 629 12 to 612       601/612
(98 %)
7 diff
(98.9 %id)
BC010997 Placenta, choriocarcinoma .b 29 to 1329 1 to 1301   available from MGC, AAA   1301/1301
(100 %)
1 diff
(100.0 %id)
BP282576 bone marrow .b 29 to 611 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
CD697502 normal nasopharynx .b 30 to 677 17 to 662       646/662
(97 %)
9 diff
(98.7 %id)
BG614193 embryonal carcinoma, testis .b 30 to 822 1 to 802       802/803
(99 %)
32 diff
(96.1 %id)
BP365828 lung .b 30 to 611 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BC002501 Skin, melanotic melanoma. .b 31 to 1329 1 to 1299   available from MGC, AAA   1299/1299
(100 %)
1 diff
(100.0 %id)
BG718994 testis .b 31 to 784 1 to 754       754/754
(100 %)
6 diff
(99.3 %id)
CN425401 embryonic stem cells, DMSO-treated H9 cellline .b 32 to 352 1 to 321       321/321
(100 %)
3 diff
(99.1 %id)
BX364537 Neuroblastoma Cot 25-normalized .b 33 to 982 1 to 949       949/949
(100 %)
3 diff
(99.7 %id)
BX394684 Neuroblastoma Cot 25-normalized .b 33 to 1009 1 to 974       974/979
(99 %)
4 diff
(99.6 %id)
BU599094 mixed (pool of 40 RNAs) .b 33 to 736 1 to 712       712/761
(93 %)
14 diff
(98.2 %id)
CB961076 Human Placenta, placenta .b 33 to 482 21 to 474       454/891
(50 %)
14 diff
(98.5 %id)
CF593850 Human Placenta, placenta .b 33 to 875 29 to 877       849/987
(86 %)
25 diff
(97.5 %id)
DA851089 placenta .b 35 to 581 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA859454 placenta .b 35 to 569 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
BC019076 Ovary, adenocarcinoma .b 36 to 1326 1 to 1291   available from MGC, AAA   1291/1291
(100 %)
1 diff
(100.0 %id)
BP364962 lung .b 36 to 608 1 to 575       575/582
(98 %)
4 diff
(99.4 %id)
DA400705 thalamus .b 37 to 583 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BQ720745 dorsal root ganglia .b 37 to 777 1 to 742       742/948
(78 %)
19 diff
(98.0 %id)
AL701505 human skeletal muscle .b 38 to 482 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
BG532021 embryonal carcinoma, testis .b 39 to 786 1 to 753       753/753
(100 %)
10 diff
(98.7 %id)
BC112330 PCR rescued clones .b 40 to 3224 1 to 3185 exact tiling clone,   3185/3185
(100 %)
0 diff
(100 %id)
CD696202 normal nasopharynx .b 42 to 453 1 to 420       420/420
(100 %)
9 diff
(97.9 %id)
BM457739 lymph, lymphoma, cell line .b 43 to 795 1 to 768       768/971
(79 %)
20 diff
(98.0 %id)
DA239846 brain .b 47 to 596 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BE894383 melanotic melanoma, skin .b 47 to 575 1 to 534       534/534
(100 %)
9 diff
(98.4 %id)
BE407687 choriocarcinoma, placenta .b 49 to 593 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
BE900860 choriocarcinoma, placenta .b 49 to 827 1 to 787   available from MGC,   754/830
(90 %)
16 diff
(98.1 %id)
BF132149 hypernephroma, Kidney .b 49 to 764 1 to 721       721/787
(91 %)
27 diff
(96.6 %id)
AV760781 bone marrow .b 50 to 717 1 to 661       661/669
(98 %)
7 diff
(99.0 %id)
DA790742 brain .b 50 to 588 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BE276624 melanotic melanoma, skin .b 51 to 557 1 to 507   available from MGC,   507/507
(100 %)
1 diff
(99.9 %id)
CD685341 normal nasopharynx .b 54 to 339 31 to 316       286/316
(90 %)
8 diff
(97.5 %id)
CD691956 normal nasopharynx .b 54 to 481 31 to 458       428/458
(93 %)
6 diff
(98.7 %id)
CD695343 normal nasopharynx .b 54 to 623 39 to 608       570/608
(93 %)
11 diff
(98.2 %id)
ES313596 beard hair, skin .b 54 to 490 1 to 437       437/437
(100 %)
2 diff
(99.6 %id)
BP309188 brain .b 54 to 634 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA459638 tongue, tumor tissue .b 55 to 622 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BE622215 melanotic melanoma, skin .b 55 to 807 1 to 752   fully sequenced,   752/752
(100 %)
29 diff
(96.2 %id)
CD695944 normal nasopharynx .b 59 to 619 22 to 582       561/582
(96 %)
6 diff
(99.0 %id)
CF995129 Human Placenta, placenta .b 59 to 551 30 to 525       496/1004
(49 %)
18 diff
(98.3 %id)
CF593485 Human Placenta, placenta .b 59 to 818 31 to 803       773/863
(89 %)
32 diff
(96.3 %id)
FN149570 breast carcinoma .b 61 to 157 97 to 1     Submitted on the opposite strand 97/97
(100 %)
0 diff
(100 %id)
CN425398 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 63 to 482 5 to 424       420/424
(99 %)
0 diff
(100 %id)
BG911300 anaplastic oligodendroglioma with 1p/19qloss, brain .b 64 to 845 1 to 795   available from MGC,   795/826
(96 %)
25 diff
(97.0 %id)
BE561133 Burkitt lymphoma, lymph .b 70 to 855 1 to 776       776/822
(94 %)
12 diff
(98.6 %id)
BP314755 mammary gland .b 70 to 652 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BG434804 placenta .b 71 to 435 1 to 367       367/367
(100 %)
5 diff
(98.7 %id)
BQ050564 leiomyosarcoma, uterus .b 71 to 947 1 to 894       894/1031
(86 %)
30 diff
(97.1 %id)
BG392340 embryonal carcinoma, cell line, testis .b 88 to 914 1 to 827       827/891
(92 %)
16 diff
(98.3 %id)
BC037554 Brain, anaplastic oligodendroglioma with1p/19q loss .b 90 to 2226 1 to 2137   available from MGC, AAA   2137/2137
(100 %)
1 diff
(100.0 %id)
N42180 melanocyte .b 569 to 898 1 to 333       333/341
(97 %)
9 diff
(97.4 %id)
CA848533 Pancreas, Purified pancreatic islet .b 604 to 1069 1 to 467   fully sequenced,   467/467
(100 %)
3 diff
(99.4 %id)
CK003232 brain/CNS, Human Brain - Cerebellar Cortex .b 669 to 1326 1 to 658   AAA   658/659
(99 %)
9 diff
(98.7 %id)
BM314178 Pancreas, Purified pancreatic islet .b 733 to 1328 596 to 1       596/596
(100 %)
0 diff
(100 %id)
BI870490 adenocarcinoma, cell line, Liver .b 750 to 1427 1 to 680       680/680
(100 %)
6 diff
(99.2 %id)
TI_57229764   .b 750 to 1427 84 to 763       680/680
(100 %)
6 diff
(99.2 %id)
BQ366106 placenta_normal .b 753 to 1307 562 to 11       554/562
(98 %)
5 diff
(99.2 %id)
BE967048 melanotic melanoma, skin .b 777 to 1333 568 to 15   fully sequenced, AAA   554/554
(100 %)
40 diff
(92.8 %id)
AI478261 Kidney .b 813 to 1329 518 to 1       518/518
(100 %)
11 diff
(97.9 %id)
CU443487 epidermis .b 816 to 1498 690 to 6     Submitted on the opposite strand 685/690
(99 %)
2 diff
(99.8 %id)
BE671851 pooled germ cell tumors .b 818 to 1333 516 to 1       516/516
(100 %)
1 diff
(99.9 %id)
AI796173 Kidney .b 819 to 1329 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
AI570614 anaplastic oligodendroglioma, brain .b 889 to 1335 447 to 1       447/447
(100 %)
0 diff
(100 %id)
N29568 melanocyte .b 898 to 1333 437 to 1       437/438
(99 %)
1 diff
(99.8 %id)
AI090560 heart .b 905 to 1327 423 to 1       423/423
(100 %)
0 diff
(100 %id)
BG006463 placenta_normal .b 909 to 1309 412 to 13       401/412
(97 %)
7 diff
(98.4 %id)
BE328388 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 913 to 1334 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AI632875 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 934 to 1333 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AI962566 pooled germ cell tumors .b 937 to 1333 408 to 12   AAA   397/397
(100 %)
1 diff
(99.8 %id)
BF760783 colon .b 938 to 1345 1 to 405       405/405
(100 %)
10 diff
(97.6 %id)
AI634764 Kidney .b 945 to 1318 385 to 12       374/385
(97 %)
0 diff
(100 %id)
AW167810 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 945 to 1329 385 to 1       385/385
(100 %)
2 diff
(99.5 %id)
AA397392   .b 947 to 1305 1 to 358       358/358
(100 %)
7 diff
(98.1 %id)
AI800854 pooled .b 952 to 1326 397 to 23   AAA   375/375
(100 %)
2 diff
(99.5 %id)
BG940949 blood .b 978 to 1326 389 to 41   AAA   349/349
(100 %)
0 diff
(100 %id)
BQ049854 lymph, lymphoma, cell line .b 986 to 1722 1 to 737   AAA   737/737
(100 %)
0 diff
(100 %id)
CB157820 Liver .b 997 to 1338 342 to 1     Submitted on the opposite strand 342/342
(100 %)
1 diff
(99.8 %id)
AI963887 pooled germ cell tumors .b 1033 to 1333 301 to 1       301/301
(100 %)
0 diff
(100 %id)
CA848246 Pancreas, Purified pancreatic islet .b 1039 to 1329 291 to 1   fully sequenced,   291/291
(100 %)
1 diff
(99.7 %id)
AI364746 B-cell, chronic lymphotic leukemia .b 1070 to 1330 259 to 1       259/259
(100 %)
1 diff
(99.7 %id)
AI955426 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1072 to 1335 264 to 1       264/264
(100 %)
2 diff
(99.3 %id)
AI243884 liver and spleen .b 1121 to 1299 179 to 1       179/179
(100 %)
1 diff
(99.5 %id)
T25338   .b 1124 to 1329 1 to 196     Submitted on the opposite strand 196/196
(100 %)
28 diff
(85.8 %id)
AI278340 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1130 to 1329 200 to 1       200/200
(100 %)
1 diff
(99.5 %id)
BG940702 blood .b 1133 to 1326 225 to 31   AAA   195/195
(100 %)
5 diff
(97.5 %id)
CK002464 brain/CNS, Bulk tissue from Human Spinal cord .b 1143 to 1350 1 to 205   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 205/213
(96 %)
9 diff
(95.8 %id)
BG940704 blood .b 1144 to 1326 213 to 31   AAA   183/183
(100 %)
2 diff
(99.0 %id)
BF685164 leiomyosarcoma cell line, uterus .b 1185 to 1862 1 to 680       680/988
(68 %)
18 diff
(98.2 %id)
CN420245 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1192 to 1953 1 to 762       762/762
(100 %)
0 diff
(100 %id)
EC439751 Prostate .b 1243 to 1332 92 to 3       90/92
(97 %)
0 diff
(100 %id)
BU509371 leiomyosarcoma, uterus .b 1318 to 2230 1 to 915       915/917
(99 %)
14 diff
(98.5 %id)
CN420243 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1353 to 2085 1 to 733       733/733
(100 %)
1 diff
(99.9 %id)
AA182906   .b 1361 to 1766 1 to 414       414/414
(100 %)
10 diff
(97.6 %id)
CN420241 embryonic stem cells, DMSO-treated H9 cellline .b 1369 to 2035 9 to 676       668/681
(98 %)
9 diff
(98.7 %id)
BI871391 adenocarcinoma, cell line, Liver .b 1410 to 2249 1 to 836       836/837
(99 %)
7 diff
(99.2 %id)
TI_57229920   .b 1410 to 2249 87 to 922       836/837
(99 %)
7 diff
(99.2 %id)
BP337670 coronary artery .b 1415 to 1996 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
CA311147 Human Lung Epithelial cells, lung .b 1537 to 2226 706 to 19   AAA   688/706
(97 %)
1 diff
(99.9 %id)
BP328690 rectum .b 1594 to 2176 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP378413 uterus .b 1598 to 2157 1 to 560       560/560
(100 %)
0 diff
(100 %id)
AW386207 pnet .b 1612 to 2143 7 to 539       533/548
(97 %)
10 diff
(98.2 %id)
CB134585 Liver .b 1680 to 2215 1 to 536       536/536
(100 %)
0 diff
(100 %id)
TI_154197255   .b 1713 to 2529 71 to 887       817/1040
(78 %)
17 diff
(98.4 %id)
TI_154196871   .b 1714 to 2527 16 to 826       811/1061
(76 %)
21 diff
(98.1 %id)
BF790676 muscle (skeletal) .b 1766 to 2502 1 to 736       736/802
(91 %)
31 diff
(96.2 %id)
BF223457 carcinoid, lung .b 1784 to 2400 616 to 1       616/617
(99 %)
28 diff
(95.5 %id)
BM715795 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1793 to 2471 1 to 679       679/679
(100 %)
3 diff
(99.6 %id)
CN420239 embryonic stem cells, DMSO-treated H9 cellline .b 1796 to 2424 9 to 637       629/637
(98 %)
7 diff
(99.0 %id)
BF815167 colon_ins .b 1815 to 2436 625 to 6     Submitted on the opposite strand 620/625
(99 %)
3 diff
(99.6 %id)
BG985061 colon_normal .b 1832 to 2246 9 to 423       415/423
(98 %)
14 diff
(96.7 %id)
BF817897 colon_ins .b 1862 to 2431 580 to 13     Submitted on the opposite strand 568/580
(97 %)
2 diff
(99.7 %id)
BP220943 colon .b 1865 to 2444 1 to 580       580/580
(100 %)
6 diff
(99.0 %id)
BP241842 Liver .b 1916 to 2484 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
BF814293 colon_ins .b 1920 to 2431 522 to 12     Submitted on the opposite strand 511/522
(97 %)
4 diff
(99.3 %id)
BF869027 lung_tumor .b 1923 to 2198 276 to 1     Submitted on the opposite strand 276/276
(100 %)
4 diff
(98.6 %id)
EC532038 Prostate .b 1929 to 2024 101 to 6       96/101
(95 %)
0 diff
(100 %id)
FN052626 breast carcinoma .b 1943 to 2045 103 to 1     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
R01411 liver and spleen .b 1992 to 2393 420 to 6       415/422
(98 %)
13 diff
(97.0 %id)
CN420240 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2003 to 2662 1 to 660       660/660
(100 %)
0 diff
(100 %id)
BQ366864 placenta_normal .b 2012 to 2529 535 to 18       519/535
(97 %)
8 diff
(98.6 %id)
BG950675 colon .b 2023 to 2337 328 to 14       315/352
(89 %)
11 diff
(96.9 %id)
BX487750   .b 2034 to 2639 1 to 606       606/606
(100 %)
1 diff
(99.9 %id)
AA181571   .b 2059 to 2185 127 to 1       127/127
(100 %)
5 diff
(96.1 %id)
CB215001 normal endometrium, late proliferativephase, cycle day 13, uterus .b 2119 to 2738 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BQ943653 carcinoma, cell line, Prostate .b 2138 to 3067 1 to 931       747/941
(79 %)
84 diff
(91.1 %id)
BM674133 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2142 to 2816 683 to 9   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 675/686
(98 %)
3 diff
(99.6 %id)
BF815639 colon_ins .b 2177 to 2431 1 to 266       264/272
(97 %)
17 diff
(93.8 %id)
BF592240 breast, lobullar carcinoma in situ .b 2204 to 2558 8 to 362     Submitted on the opposite strand 355/381
(93 %)
7 diff
(98.2 %id)
AA062731 cornea .b 2246 to 2649 405 to 1       405/406
(99 %)
1 diff
(99.8 %id)
BF507376   .b 2262 to 2798 549 to 13   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 537/549
(97 %)
0 diff
(100 %id)
AK025735   .b 2265 to 4430 1 to 2166   tiling clone, available from FLJ, AAA   2166/2166
(100 %)
4 diff
(99.9 %id)
BP241162 Liver .b 2265 to 2823 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
BF850088 lung_normal .b 2312 to 2674 363 to 7     Submitted on the opposite strand 357/363
(98 %)
1 diff
(99.8 %id)
AW889555 nervous_tumor .b 2335 to 2633 315 to 11       305/344
(88 %)
17 diff
(95.1 %id)
BF991146 placenta_normal .b 2339 to 2664 8 to 333       326/333
(97 %)
6 diff
(98.2 %id)
CN420244 embryonic stem cells, cell lines H1, H7, andH9 .b 2448 to 2998 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BF766993 colon_est .b 2468 to 2840 1 to 372       372/372
(100 %)
10 diff
(97.4 %id)
AI903864 breast .b 2471 to 2525 1 to 55       55/55
(100 %)
0 diff
(100 %id)
CV354654 colon_ins .b 2476 to 2797 342 to 8     Submitted on the opposite strand 335/342
(97 %)
14 diff
(96.0 %id)
BE769202 prostate_tumor .b 2498 to 2762 264 to 1       264/265
(99 %)
3 diff
(98.9 %id)
BU151701 sciatic nerve .b 2525 to 3211 1 to 702       702/915
(76 %)
40 diff
(95.7 %id)
AW365215 head_neck .b 2555 to 2819 15 to 278       264/278
(94 %)
7 diff
(97.5 %id)
AW393416 stomach .b 2563 to 2835 280 to 8       273/287
(95 %)
11 diff
(96.2 %id)
AW365214 head_neck .b 2568 to 2832 276 to 18       259/276
(93 %)
2 diff
(99.3 %id)
AW819589 stomach .b 2574 to 2834 1 to 260       260/456
(57 %)
9 diff
(98.1 %id)
AW819718 stomach .b 2574 to 2826 253 to 1       253/253
(100 %)
2 diff
(99.3 %id)
AW365217 head_neck .b 2575 to 2820 243 to 1       243/243
(100 %)
5 diff
(98.0 %id)
BI043533 ovary .b 2578 to 2876 346 to 46       300/362
(82 %)
14 diff
(96.2 %id)
BE772506 prostate_tumor .b 2587 to 2854 275 to 8       268/275
(97 %)
0 diff
(100 %id)
BE772679 prostate_tumor .b 2587 to 2873 287 to 1       287/287
(100 %)
0 diff
(100 %id)
BE772690 prostate_tumor .b 2587 to 2873 1 to 287       287/287
(100 %)
0 diff
(100 %id)
BG328524 adenocarcinoma cell line, colon .b 2611 to 2713 1 to 102       102/102
(100 %)
2 diff
(98.1 %id)
CU447076 epidermis .b 2686 to 2875 204 to 15     Submitted on the opposite strand 190/206
(92 %)
8 diff
(96.2 %id)
BF376520 testis_normal .b 2688 to 2866 177 to 3       175/177
(98 %)
1 diff
(99.5 %id)
CR614227 Placenta Cot 25-normalized .b 2693 to 3572 1 to 880       880/880
(100 %)
0 diff
(100 %id)
BX365322 Placenta Cot 25-normalized .b 2693 to 3746 1 to 1042       1042/1066
(97 %)
15 diff
(98.6 %id)
CD619855   .b 2790 to 3220 8 to 438       431/438
(98 %)
9 diff
(98.0 %id)
CD619856   .b 2790 to 3220 431 to 1       431/439
(98 %)
6 diff
(98.7 %id)
CD619857   .b 2790 to 3220 8 to 438       431/438
(98 %)
8 diff
(98.2 %id)
CD619858   .b 2790 to 3220 431 to 1       431/439
(98 %)
6 diff
(98.7 %id)
CD619859   .b 2790 to 3220 8 to 437       430/437
(98 %)
7 diff
(98.4 %id)
CD619860   .b 2790 to 3220 431 to 1       431/439
(98 %)
6 diff
(98.7 %id)
CD619861   .b 2790 to 3220 8 to 435       428/435
(98 %)
9 diff
(98.0 %id)
CD619862   .b 2790 to 3220 432 to 1       432/440
(98 %)
7 diff
(98.5 %id)
CD619863   .b 2790 to 3209 8 to 428       421/437
(96 %)
10 diff
(97.8 %id)
CD619865   .b 2790 to 3220 8 to 437       430/437
(98 %)
9 diff
(98.0 %id)
CD619866   .b 2790 to 3228 439 to 1       439/447
(98 %)
6 diff
(98.7 %id)
CD619864   .b 2798 to 3228 433 to 1       433/450
(96 %)
5 diff
(98.9 %id)
BF737945 bladder_tumor .b 2816 to 3193 1 to 377       377/377
(100 %)
6 diff
(98.5 %id)
BF743752 breast .b 2840 to 3217 404 to 27     Submitted on the opposite strand 378/415
(91 %)
4 diff
(99.1 %id)
BG259625 embryonal carcinoma, cell line, testis .b 2924 to 3537 1 to 613       613/874
(70 %)
9 diff
(99.0 %id)
TI_149309064   .b 2997 to 3430 496 to 63       434/1074
(40 %)
0 diff
(100 %id)
CB851287 lung .b 2997 to 3430 450 to 17       434/465
(93 %)
0 diff
(100 %id)
CF139788 CNCAP(3)T-225 cell line, Prostate .b 3080 to 3424 1 to 347       347/347
(100 %)
26 diff
(92.6 %id)
BX350224 Placenta Cot 25-normalized .b 3180 to 3572 394 to 1       394/436
(90 %)
0 diff
(100 %id)
AL576205.
matches multiple genes
placenta, Placenta Cot 25-normalized .b 3241 to 4410 1154 to 1     also hits gene FER 1154/1196
(96 %)
55 diff
(95.5 %id)
BX365321 Placenta Cot 25-normalized .b 3339 to 4392 1059 to 1       1059/1110
(95 %)
17 diff
(98.5 %id)
BI962937 Islets of Langerhans, Pancreas .b 3410 to 3914 1 to 506   fully sequenced,   506/506
(100 %)
1 diff
(99.9 %id)
CN388964 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3417 to 3817 1 to 402       402/402
(100 %)
1 diff
(99.8 %id)
BG059381 nasopharynx, normal epithelium .b 3431 to 3768 335 to 1     Submitted on the opposite strand 335/335
(100 %)
1 diff
(99.8 %id)
CB163299 Liver .b 3516 to 3832 17 to 333       317/333
(95 %)
6 diff
(98.2 %id)
CB160079 Liver .b 3516 to 4008 16 to 508       493/508
(97 %)
6 diff
(98.9 %id)
BE139716 ovary, papillary serous carcinoma .b 3520 to 3738 261 to 43       219/272
(80 %)
0 diff
(100 %id)
H99038 melanocyte .b 3522 to 4089 1 to 570     Submitted on the opposite strand 570/665
(85 %)
16 diff
(97.6 %id)
AI252470 ovary, papillary serous carcinoma .b 3522 to 3738 230 to 14       217/239
(90 %)
0 diff
(100 %id)
AI254260 ovary, papillary serous carcinoma .b 3522 to 3738 231 to 14       218/240
(90 %)
0 diff
(100 %id)
AI255126 ovary, papillary serous carcinoma .b 3522 to 3738 263 to 46       218/272
(80 %)
0 diff
(100 %id)
AI252957 ovary, papillary serous carcinoma .b 3522 to 3738 230 to 14       217/239
(90 %)
0 diff
(100 %id)
AI241999 ovary, papillary serous carcinoma .b 3522 to 3738 227 to 14       214/236
(90 %)
0 diff
(100 %id)
AI613415 brain, oligodendroglioma .b 3522 to 3738 241 to 25       217/250
(86 %)
0 diff
(100 %id)
AI609915 brain, oligodendroglioma .b 3522 to 3738 253 to 37       217/262
(82 %)
0 diff
(100 %id)
AW086119 pooled .b 3522 to 3738 238 to 22       217/259
(83 %)
0 diff
(100 %id)
AW086239 pooled .b 3522 to 3738 239 to 22       218/260
(83 %)
0 diff
(100 %id)
AW271882 ovary, papillary serous carcinoma .b 3522 to 3738 231 to 14       218/240
(90 %)
0 diff
(100 %id)
AW271920 ovary, papillary serous carcinoma .b 3522 to 3738 231 to 14       218/240
(90 %)
0 diff
(100 %id)
AW302939 ovary, papillary serous carcinoma .b 3522 to 3738 230 to 14       217/239
(90 %)
0 diff
(100 %id)
AW303127 ovary, papillary serous carcinoma .b 3522 to 3743 233 to 11       223/242
(92 %)
0 diff
(100 %id)
AW268327 ovary, papillary serous carcinoma .b 3522 to 3738 242 to 25       218/251
(86 %)
0 diff
(100 %id)
BE139416 ovary, papillary serous carcinoma .b 3522 to 3743 233 to 11       223/242
(92 %)
0 diff
(100 %id)
BE138545 ovary, papillary serous carcinoma .b 3522 to 3738 230 to 14       217/238
(91 %)
0 diff
(100 %id)
BE857818 ovary, papillary serous carcinoma .b 3522 to 3738 242 to 25       218/251
(86 %)
0 diff
(100 %id)
BE857855 ovary, papillary serous carcinoma .b 3522 to 3738 260 to 43       218/269
(81 %)
0 diff
(100 %id)
TI_149274810   .b 3522 to 4430 979 to 90   AAA   890/1021
(87 %)
24 diff
(97.7 %id)
CD177404 embryonic trophoblasts, made from WA01 stemcells .b 3523 to 3742 232 to 11   AAA Submitted on the opposite strand 222/235
(94 %)
0 diff
(100 %id)
AI254086 ovary, papillary serous carcinoma .b 3523 to 3738 231 to 14       218/242
(90 %)
0 diff
(100 %id)
AI252824 ovary, papillary serous carcinoma .b 3523 to 3738 230 to 14       217/245
(88 %)
0 diff
(100 %id)
AI345506 brain, oligodendroglioma .b 3523 to 3738 238 to 24       215/252
(85 %)
0 diff
(100 %id)
AW086280 pooled .b 3523 to 3738 237 to 22       216/256
(84 %)
0 diff
(100 %id)
AW086307 pooled .b 3523 to 3738 238 to 22       217/264
(82 %)
0 diff
(100 %id)
AW086365 pooled .b 3523 to 3738 238 to 22       217/257
(84 %)
0 diff
(100 %id)
AW086372 pooled .b 3523 to 3738 238 to 22       217/264
(82 %)
0 diff
(100 %id)
AW086376 pooled .b 3523 to 3738 239 to 22       218/258
(84 %)
0 diff
(100 %id)
AW470437 ovary, papillary serous carcinoma .b 3523 to 3738 229 to 14       216/269
(80 %)
0 diff
(100 %id)
AW302416 ovary, papillary serous carcinoma .b 3523 to 3738 229 to 14       216/241
(89 %)
0 diff
(100 %id)
AW302834 ovary, papillary serous carcinoma .b 3523 to 3738 229 to 14       216/257
(84 %)
0 diff
(100 %id)
BE049055 ovary, papillary serous carcinoma .b 3523 to 3738 229 to 14       216/240
(90 %)
0 diff
(100 %id)
BE139233 ovary, papillary serous carcinoma .b 3523 to 3738 259 to 43       217/260
(83 %)
0 diff
(100 %id)
BE139343 ovary, papillary serous carcinoma .b 3523 to 3738 231 to 14       218/242
(90 %)
0 diff
(100 %id)
BE139354 ovary, papillary serous carcinoma .b 3523 to 3738 255 to 40       216/267
(80 %)
0 diff
(100 %id)
BE049173 ovary, papillary serous carcinoma .b 3523 to 3738 240 to 25       216/252
(85 %)
0 diff
(100 %id)
BE138538 ovary, papillary serous carcinoma .b 3523 to 3738 229 to 14       216/241
(89 %)
0 diff
(100 %id)
BU932994 mixed (pool of 40 RNAs) .b 3523 to 4212 35 to 732       698/831
(83 %)
30 diff
(96.4 %id)
AI252966 ovary, papillary serous carcinoma .b 3524 to 3738 228 to 14       215/238
(90 %)
0 diff
(100 %id)
AI253998 ovary, papillary serous carcinoma .b 3524 to 3738 234 to 20       215/234
(91 %)
0 diff
(100 %id)
BE049050 ovary, papillary serous carcinoma .b 3524 to 3738 236 to 22       215/247
(87 %)
0 diff
(100 %id)
BE049054 ovary, papillary serous carcinoma .b 3524 to 3738 228 to 14       215/238
(90 %)
0 diff
(100 %id)
BE139403 ovary, papillary serous carcinoma .b 3524 to 3738 228 to 14       215/228
(94 %)
0 diff
(100 %id)
AV702631 adrenal gland .b 3525 to 4010 604 to 118   AAA Submitted on the opposite strand 487/604
(80 %)
0 diff
(100 %id)
AI144031 ovary, papillary serous carcinoma .b 3525 to 3738 250 to 37       214/260
(82 %)
0 diff
(100 %id)
AI609438 brain, oligodendroglioma .b 3525 to 3738 237 to 25       213/247
(86 %)
0 diff
(100 %id)
BE049009 ovary, papillary serous carcinoma .b 3526 to 3738 236 to 25       212/236
(89 %)
0 diff
(100 %id)
AI054274 ovary, papillary serous carcinoma .b 3527 to 3738 1 to 212     Submitted on the opposite strand 212/234
(90 %)
1 diff
(99.6 %id)
AI609448 brain, oligodendroglioma .b 3527 to 3735 239 to 28       212/251
(84 %)
0 diff
(100 %id)
AA805299 germinal center B cell .b 3528 to 3969 1 to 443     Submitted on the opposite strand 443/443
(100 %)
12 diff
(97.3 %id)
AI053512 ovary, papillary serous carcinoma .b 3530 to 3738 1 to 209     Submitted on the opposite strand 209/231
(90 %)
1 diff
(99.6 %id)
BU685579 lung, Primary Lung Epithelial Cells .b 3530 to 4158 1 to 629     Submitted on the opposite strand 629/636
(98 %)
3 diff
(99.6 %id)
CA438081 lung, Metastatic Chondrosarcoma .b 3530 to 4204 1 to 674     Submitted on the opposite strand 674/674
(100 %)
1 diff
(99.9 %id)
AW293890   .b 3531 to 4081 1 to 551     Submitted on the opposite strand 551/551
(100 %)
0 diff
(100 %id)
AI053734 ovary, papillary serous carcinoma .b 3532 to 3738 1 to 207     Submitted on the opposite strand 207/229
(90 %)
2 diff
(99.2 %id)
AI054309 ovary, papillary serous carcinoma .b 3533 to 3738 1 to 206     Submitted on the opposite strand 206/228
(90 %)
1 diff
(99.6 %id)
AI028150 parathyroid gland, parathyroid tumor .b 3534 to 3849 1 to 316     Submitted on the opposite strand 316/316
(100 %)
2 diff
(99.4 %id)
AI054092 ovary, papillary serous carcinoma .b 3534 to 3738 1 to 205     Submitted on the opposite strand 205/227
(90 %)
2 diff
(99.2 %id)
BE671334 carcinoid, lung .b 3535 to 3950 1 to 416     Submitted on the opposite strand 416/416
(100 %)
0 diff
(100 %id)
BF111154 carcinoid, lung .b 3535 to 3974 1 to 440     Submitted on the opposite strand 440/444
(99 %)
1 diff
(99.8 %id)
BF438220 carcinoid, lung .b 3535 to 4061 1 to 527     Submitted on the opposite strand 527/527
(100 %)
0 diff
(100 %id)
AI054001 ovary, papillary serous carcinoma .b 3536 to 3738 1 to 203     Submitted on the opposite strand 203/225
(90 %)
1 diff
(99.6 %id)
AI054119 ovary, papillary serous carcinoma .b 3536 to 3738 1 to 203     Submitted on the opposite strand 203/225
(90 %)
1 diff
(99.6 %id)
BF110140 carcinoid, lung .b 3537 to 4068 1 to 532     Submitted on the opposite strand 532/532
(100 %)
1 diff
(99.9 %id)
BF447862 carcinoid, lung .b 3537 to 4043 1 to 507     Submitted on the opposite strand 507/507
(100 %)
2 diff
(99.7 %id)
CN388965 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3538 to 4108 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
AI301804 carcinoid, lung .b 3538 to 3755 1 to 218     Submitted on the opposite strand 218/218
(100 %)
0 diff
(100 %id)
AI857916 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 3538 to 4037 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AI857918 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 3538 to 4036 1 to 499     Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
AW272079 ovary, papillary serous carcinoma .b 3538 to 3738 215 to 14       202/215
(93 %)
0 diff
(100 %id)
W56312 heart .b 3539 to 3990 1 to 451     Submitted on the opposite strand 451/451
(100 %)
1 diff
(99.8 %id)
AA972288 pooled .b 3540 to 3711 1 to 172     Submitted on the opposite strand 172/172
(100 %)
1 diff
(99.5 %id)
AI474719 Kidney .b 3540 to 3826 1 to 287     Submitted on the opposite strand 287/287
(100 %)
0 diff
(100 %id)
AI077801 parathyroid gland, parathyroid tumor .b 3541 to 3926 1 to 385     Submitted on the opposite strand 385/385
(100 %)
1 diff
(99.8 %id)
BE138950 ovary, papillary serous carcinoma .b 3542 to 3738 219 to 22       198/219
(90 %)
0 diff
(100 %id)
N20188 melanocyte .b 3543 to 4016 1 to 473     Submitted on the opposite strand 473/473
(100 %)
2 diff
(99.6 %id)
AA508851 colon .b 3543 to 4002 1 to 460     Submitted on the opposite strand 460/460
(100 %)
2 diff
(99.6 %id)
AI863765 2 pooled tumors (clear cell type), Kidney .b 3543 to 3865 1 to 323     Submitted on the opposite strand 323/323
(100 %)
0 diff
(100 %id)
AW615247 Kidney .b 3543 to 4034 1 to 492     Submitted on the opposite strand 492/492
(100 %)
0 diff
(100 %id)
BE220388 carcinoid, lung .b 3543 to 4031 1 to 489     Submitted on the opposite strand 489/489
(100 %)
0 diff
(100 %id)
AI916557 Kidney .b 3544 to 4084 1 to 541     Submitted on the opposite strand 541/541
(100 %)
3 diff
(99.5 %id)
EC468756 Prostate .b 3546 to 3640 95 to 1       95/95
(100 %)
4 diff
(95.8 %id)
AI796821 carcinoid, lung .b 3546 to 4016 1 to 473     Submitted on the opposite strand 473/473
(100 %)
7 diff
(98.6 %id)
AA376332 lung .b 3548 to 3726 1 to 179       179/179
(100 %)
2 diff
(98.9 %id)
W85832 liver and spleen .b 3548 to 3982 1 to 440     Submitted on the opposite strand 440/440
(100 %)
8 diff
(98.2 %id)
BM503829 Pancreas, Purified pancreatic islet .b 3573 to 4110 18 to 553       536/553
(96 %)
6 diff
(99.0 %id)
BM068748 Islets of Langerhans, Pancreas .b 3574 to 3655 1 to 82       82/82
(100 %)
0 diff
(100 %id)
AA343852 gall bladder .b 3584 to 3836 1 to 252       252/258
(97 %)
4 diff
(98.5 %id)
W87679 liver and spleen .b 3589 to 3990 1 to 412       412/412
(100 %)
14 diff
(96.7 %id)
CB053910 brain, glioblastoma (pooled) .b 3591 to 3957 10 to 376       367/376
(97 %)
6 diff
(98.5 %id)
TI_149271102   .b 3603 to 4430 917 to 102   AAA   816/1011
(80 %)
25 diff
(97.6 %id)
AA010091 liver and spleen .b 3610 to 3943 1 to 342       342/409
(83 %)
14 diff
(96.6 %id)
T97583 liver and spleen .b 3611 to 3935 1 to 333       333/397
(83 %)
16 diff
(96.0 %id)
H30163 breast .b 3621 to 3980 1 to 364       364/364
(100 %)
7 diff
(98.1 %id)
H30123 breast .b 3621 to 4081 1 to 465       465/470
(98 %)
8 diff
(98.3 %id)
BE778034 eye, retinoblastoma .b 3621 to 4411 780 to 1     Submitted on the opposite strand 780/981
(79 %)
67 diff
(93.2 %id)
TI_149274500   .b 3625 to 4430 930 to 136   AAA   795/930
(85 %)
21 diff
(97.8 %id)
BU569850 testis .b 3633 to 4289 1 to 656       656/751
(87 %)
7 diff
(99.1 %id)
TI_149306299   .b 3636 to 4430 892 to 106   AAA   787/948
(83 %)
14 diff
(98.6 %id)
W52638 senescent fibroblast .b 3643 to 4062 1 to 421   fully sequenced,   421/421
(100 %)
2 diff
(99.6 %id)
BM699415 eye, fetal eyes .b 3643 to 4048 1 to 407   fully sequenced,   407/407
(100 %)
0 diff
(100 %id)
BF790517 muscle (skeletal) .b 3666 to 4268 1 to 598   AAA   598/748
(79 %)
18 diff
(97.6 %id)
TI_154191074   .b 3698 to 4427 40 to 766   AAA   727/727
(100 %)
7 diff
(99.1 %id)
CF129381 Chondrosarcoma Lung Metastasis cell lines, lung .b 3699 to 4423 1 to 722       722/722
(100 %)
6 diff
(99.2 %id)
AW404269 lymph .b 3717 to 3942 8 to 233       226/233
(96 %)
6 diff
(97.5 %id)
BU624147 cell lines, Enchondroma .b 3728 to 4430 719 to 19   AAA   701/701
(100 %)
2 diff
(99.8 %id)
TI_149280145   .b 3730 to 4424 777 to 85   AAA   693/700
(99 %)
3 diff
(99.6 %id)
TI_154100148   .b 3734 to 4430 789 to 94   AAA   696/699
(99 %)
5 diff
(99.3 %id)
BU615169 Bone, Human Chondrosarcoma Cell Line .b 3739 to 4430 710 to 19   AAA   692/692
(100 %)
1 diff
(99.9 %id)
BQ180945 Knee, Osteoarthritic Cartilage .b 3743 to 4430 697 to 11   AAA   687/687
(100 %)
2 diff
(99.8 %id)
BQ775397 Bone, Human Chondrosarcoma Cell Line .b 3743 to 4430 705 to 19   AAA   687/687
(100 %)
2 diff
(99.8 %id)
BU615354 Bone, Human Chondrosarcoma Cell Line .b 3743 to 4430 706 to 19   AAA   688/688
(100 %)
1 diff
(99.9 %id)
BF907836 uterus_tumor .b 3745 to 4148 1 to 402       402/402
(100 %)
6 diff
(98.6 %id)
BF908464 uterus_tumor .b 3745 to 4148 1 to 402       402/402
(100 %)
6 diff
(98.6 %id)
AA383338 testis .b 3746 to 4066 1 to 323       323/323
(100 %)
2 diff
(99.4 %id)
BU676329 lung, Primary Lung Epithelial Cells .b 3749 to 4430 699 to 19   AAA   681/681
(100 %)
2 diff
(99.8 %id)
DW411348 Liver .b 3753 to 4062 17 to 329       313/329
(95 %)
6 diff
(98.2 %id)
CD242239 brain, Pituitary .b 3769 to 4427 1 to 662       662/957
(69 %)
6 diff
(99.4 %id)
BQ776017 Bone, Human Chondrosarcoma Cell Line .b 3782 to 4430 671 to 19   AAA   653/653
(100 %)
3 diff
(99.6 %id)
TI_151716240   .b 3795 to 4433 770 to 132       639/890
(71 %)
0 diff
(100 %id)
BM699902 eye, lens .b 3799 to 4295 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
CA441199 Fibrosarcoma .b 3826 to 4430 623 to 19   AAA   605/605
(100 %)
1 diff
(99.9 %id)
BU676171 lung, Primary Lung Epithelial Cells .b 3829 to 4430 620 to 19   AAA   602/602
(100 %)
3 diff
(99.6 %id)
BU679069 lung, Primary Lung Epithelial Cells .b 3830 to 4424 613 to 19   AAA   595/595
(100 %)
1 diff
(99.9 %id)
CA419786 Bone, Human Chondrosarcoma Cell Line .b 3831 to 4430 618 to 19   AAA   600/600
(100 %)
1 diff
(99.9 %id)
BU615383 Bone, Human Chondrosarcoma Cell Line .b 3838 to 4430 611 to 19   AAA   593/593
(100 %)
1 diff
(99.9 %id)
BU686346 lung, Primary Lung Epithelial Cells .b 3839 to 4430 611 to 19   AAA   593/593
(100 %)
2 diff
(99.7 %id)
BQ776093 Bone, Human Chondrosarcoma Cell Line .b 3839 to 4430 610 to 19   AAA   592/592
(100 %)
1 diff
(99.9 %id)
CV574722 cornea, eye .b 3859 to 4433 598 to 24     Submitted on the opposite strand 575/598
(96 %)
0 diff
(100 %id)
AA327101 colon .b 3860 to 4078 1 to 219       219/220
(99 %)
1 diff
(99.6 %id)
AW451662   .b 3860 to 4430 588 to 18   AAA   571/571
(100 %)
4 diff
(99.3 %id)
BU674204 lung, Primary Lung Epithelial Cells .b 3879 to 4430 571 to 19   AAA   553/553
(100 %)
2 diff
(99.7 %id)
AI525683 Prostate .b 3880 to 4433 19 to 571       553/585
(94 %)
12 diff
(98.0 %id)
BM509973 Pancreas, Purified pancreatic islet .b 3884 to 4425 542 to 3       540/542
(99 %)
0 diff
(100 %id)
BI966767 Islets of Langerhans, Pancreas .b 3884 to 4425 542 to 1   fully sequenced,   542/542
(100 %)
1 diff
(99.9 %id)
BM054736 Islets of Langerhans, Pancreas .b 3888 to 4433 549 to 4       546/549
(99 %)
0 diff
(100 %id)
AK025408 colon mucosa .b 3899 to 4430 1 to 532   available from FLJ, AAA   532/532
(100 %)
2 diff
(99.7 %id)
AA229878   .b 3901 to 4273 1 to 372       372/372
(100 %)
7 diff
(98.2 %id)
W78984 liver and spleen .b 3903 to 4145 1 to 248   fully sequenced,   248/248
(100 %)
0 diff
(100 %id)
TI_149283786   .b 3919 to 4430 588 to 79   AAA   510/695
(73 %)
22 diff
(96.9 %id)
AI393208 B-cell, chronic lymphotic leukemia .b 3930 to 4433 504 to 2       503/504
(99 %)
0 diff
(100 %id)
BF248408 melanotic melanoma, high MDR, skin .b 3952 to 4434 1 to 482       482/517
(93 %)
23 diff
(95.6 %id)
BF591221 colon, colon tumor, RER+ .b 3958 to 4430 492 to 20   AAA   473/473
(100 %)
3 diff
(99.4 %id)
BX096892 heart .b 3960 to 4425 1 to 466       466/466
(100 %)
1 diff
(99.8 %id)
CN388966 embryonic stem cells, cell lines H1, H7, andH9 .b 3961 to 4433 480 to 8     Submitted on the opposite strand 473/480
(98 %)
0 diff
(100 %id)
W47309.
matches multiple genes
senescent fibroblast .b 3961 to 4385 1 to 428     Submitted on the opposite strand, submitted on the opposite strand, also hits gene WWTR1 428/428
(100 %)
6 diff
(98.6 %id)
AI373669 Kidney .b 3961 to 4430 481 to 12   AAA   470/470
(100 %)
1 diff
(99.8 %id)
BF002647 colon, colon tumor, RER+ .b 3961 to 4410 459 to 12       448/459
(97 %)
0 diff
(100 %id)
AW297765   .b 3970 to 4430 478 to 18   AAA   461/461
(100 %)
3 diff
(99.4 %id)
BM698487 eye, fetal eyes .b 3972 to 4433 1 to 464   tiling clone, fully sequenced,   464/464
(100 %)
3 diff
(99.4 %id)
AW302212 Kidney .b 3973 to 4430 458 to 1       458/458
(100 %)
5 diff
(99.0 %id)
AW594234 pooled germ cell tumors .b 3976 to 4432 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
AA553908 colon, tumor .b 3977 to 4432 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
N29090 melanocyte .b 3994 to 4395 404 to 1     Submitted on the opposite strand 404/441
(91 %)
10 diff
(97.8 %id)
BU615236 Bone, Human Chondrosarcoma Cell Line .b 4003 to 4430 447 to 19   AAA   429/429
(100 %)
7 diff
(98.4 %id)
AV735933 cord Blood .b 4006 to 4430 13 to 427   AAA   415/427
(97 %)
12 diff
(97.2 %id)
AI921887 2 pooled tumors (clear cell type), Kidney .b 4007 to 4432 426 to 1       426/426
(100 %)
1 diff
(99.8 %id)
AI199148 anaplastic oligodendroglioma, brain .b 4013 to 4430 437 to 20   AAA   418/418
(100 %)
1 diff
(99.8 %id)
AI754117 bone marrow stroma .b 4014 to 4430 436 to 19   tiling clone, AAA   418/418
(100 %)
1 diff
(99.8 %id)
BM670062 eye, fetal eyes .b 4018 to 4430 432 to 19   fully sequenced, AAA   414/414
(100 %)
3 diff
(99.3 %id)
AI379841 pooled .b 4019 to 4433 415 to 1       415/415
(100 %)
2 diff
(99.6 %id)
AI092052 heart .b 4020 to 4433 414 to 1       414/414
(100 %)
6 diff
(98.6 %id)
H28283 breast .b 4021 to 4402 388 to 3       386/388
(99 %)
0 diff
(100 %id)
AI138773   .b 4021 to 4430 435 to 26   AAA   410/410
(100 %)
1 diff
(99.8 %id)
AI879923 colon .b 4024 to 4430 407 to 1       407/407
(100 %)
1 diff
(99.8 %id)
AI610614 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4026 to 4430 416 to 12   AAA   405/405
(100 %)
1 diff
(99.8 %id)
D20235   .b 4026 to 4293 1 to 268     Submitted on the opposite strand 268/268
(100 %)
3 diff
(98.9 %id)
W51990 senescent fibroblast .b 4032 to 4435 407 to 1   fully sequenced,   407/407
(100 %)
6 diff
(98.6 %id)
AI631595 pooled germ cell tumors .b 4032 to 4425 396 to 3       394/396
(99 %)
0 diff
(100 %id)
W56428 heart .b 4035 to 4426 391 to 1     Submitted on the opposite strand 391/391
(100 %)
3 diff
(99.3 %id)
BM151188 leukopheresis .b 4038 to 4429 406 to 15   AAA   392/393
(99 %)
7 diff
(98.3 %id)
AI699493 pooled germ cell tumors .b 4039 to 4432 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
H64447 nose, olfactory epithelium .b 4045 to 4433 1 to 398   fully sequenced,   398/398
(100 %)
14 diff
(96.5 %id)
BP396729 pancreatic islet .b 4052 to 4433 1 to 382     Submitted on the opposite strand 382/384
(99 %)
3 diff
(99.3 %id)
AW572147 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 4055 to 4430 386 to 12   AAA   375/375
(100 %)
8 diff
(97.9 %id)
CK003263 brain/CNS, Human Brain - Cerebellar Cortex .b 4067 to 4431 15 to 379   AAA   365/379
(96 %)
6 diff
(98.5 %id)
AA582764 germ cell tumor .b 4074 to 4430 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
TI_149280769   .b 4074 to 4433 58 to 416     Submitted on the opposite strand 359/915
(39 %)
6 diff
(99.4 %id)
AW303481 pooled .b 4080 to 4427 349 to 4       346/349
(99 %)
0 diff
(100 %id)
BM968224 lung, Primary Lung Epithelial Cells .b 4080 to 4330 1 to 252     Submitted on the opposite strand 252/260
(96 %)
3 diff
(98.9 %id)
BM969937 lung, Primary Lung Epithelial Cells .b 4080 to 4430 1 to 353   AAA Submitted on the opposite strand 353/353
(100 %)
6 diff
(98.4 %id)
TI_149272830   .b 4082 to 4426 486 to 143   AAA   344/963
(35 %)
6 diff
(99.4 %id)
AA758790   .b 4083 to 4433 353 to 4       350/357
(98 %)
0 diff
(100 %id)
AI220383 pooled .b 4083 to 4430 348 to 1       348/349
(99 %)
1 diff
(99.8 %id)
CA438034 lung, Metastatic Chondrosarcoma .b 4085 to 4430 1 to 346   AAA Submitted on the opposite strand 346/346
(100 %)
4 diff
(98.9 %id)
AI927955 Kidney .b 4090 to 4284 1 to 195     Submitted on the opposite strand 195/195
(100 %)
6 diff
(97.0 %id)
AA877051 metastatic prostate bone lesion .b 4093 to 4433 1 to 341       341/342
(99 %)
6 diff
(98.3 %id)
BQ102231 Islets of Langerhans, Pancreas .b 4098 to 4433 336 to 1       336/347
(96 %)
1 diff
(99.8 %id)
CK822845 Islets of Langerhans, Pancreas .b 4098 to 4433 336 to 1       336/347
(96 %)
1 diff
(99.8 %id)
T97631 liver and spleen .b 4099 to 4433 339 to 2       338/340
(99 %)
0 diff
(100 %id)
W87763 liver and spleen .b 4099 to 4432 334 to 1       334/334
(100 %)
1 diff
(99.8 %id)
BQ102495 Islets of Langerhans, Pancreas .b 4099 to 4430 1 to 332   AAA   332/332
(100 %)
1 diff
(99.7 %id)
CK822846 Islets of Langerhans, Pancreas .b 4099 to 4430 1 to 332   AAA   332/332
(100 %)
1 diff
(99.7 %id)
AI698005 carcinoid, lung .b 4104 to 4397 1 to 294     Submitted on the opposite strand 294/294
(100 %)
2 diff
(99.4 %id)
W93490 heart .b 4109 to 4428 1 to 320   fully sequenced,   320/320
(100 %)
2 diff
(99.4 %id)
BU565702 mixed (pool of 40 RNAs) .b 4111 to 4433 1 to 323       323/895
(36 %)
4 diff
(99.6 %id)
AI955955 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 4112 to 4430 333 to 13   AAA   321/321
(100 %)
5 diff
(98.5 %id)
AI654802 pooled germ cell tumors .b 4113 to 4424 339 to 28   AAA   312/312
(100 %)
4 diff
(98.8 %id)
BF059481 pooled germ cell tumors .b 4114 to 4425 315 to 4       312/315
(99 %)
0 diff
(100 %id)
W80386 liver and spleen .b 4115 to 4430 317 to 1   fully sequenced,   317/317
(100 %)
4 diff
(98.8 %id)
AI867372 colon, colon tumor, RER+ .b 4120 to 4431 312 to 1       312/312
(100 %)
3 diff
(99.1 %id)
BM667410 eye, fetal eyes .b 4124 to 4430 327 to 19   fully sequenced, AAA   309/309
(100 %)
1 diff
(99.7 %id)
BM984194 lung, Primary Lung Epithelial Cells .b 4126 to 4430 323 to 19   AAA   305/305
(100 %)
3 diff
(99.1 %id)
BM309981 insulinoma, Pancreas .b 4132 to 4430 8 to 306   AAA   299/306
(97 %)
6 diff
(98.1 %id)
BM310261 insulinoma, Pancreas .b 4132 to 4430 328 to 30   AAA   299/305
(98 %)
1 diff
(99.7 %id)
CB047238 Kidney .b 4139 to 4430 10 to 301   AAA   292/301
(97 %)
6 diff
(98.1 %id)
AI742822 pooled .b 4159 to 4430 293 to 21   AAA   273/273
(100 %)
2 diff
(99.3 %id)
AA010192 liver and spleen .b 4161 to 4432 272 to 1       272/273
(99 %)
1 diff
(99.7 %id)
AI300724 2 pooled tumors (clear cell type), Kidney .b 4162 to 4433 275 to 4       272/275
(98 %)
0 diff
(100 %id)
BG390273 embryonal carcinoma, cell line, testis .b 4164 to 4369 208 to 4     Submitted on the opposite strand 205/238
(86 %)
0 diff
(100 %id)
BF115196 Kidney .b 4165 to 4430 266 to 1       266/266
(100 %)
1 diff
(99.7 %id)
H27459 breast .b 4170 to 4390 221 to 1       221/221
(100 %)
1 diff
(99.6 %id)
AW452013   .b 4174 to 4430 274 to 18   AAA   257/267
(96 %)
1 diff
(99.7 %id)
AI797667 pooled .b 4179 to 4424 246 to 1       246/246
(100 %)
1 diff
(99.6 %id)
W73795 heart .b 4182 to 4430 265 to 17   AAA   249/249
(100 %)
1 diff
(99.6 %id)
H40493 brain .b 4184 to 4429 246 to 1       246/247
(99 %)
4 diff
(98.4 %id)
AI656956 pooled germ cell tumors .b 4191 to 4433 244 to 2       243/244
(99 %)
0 diff
(100 %id)
AW002580 pooled germ cell tumors .b 4192 to 4433 244 to 3       242/244
(99 %)
0 diff
(100 %id)
AI431287 aorta .b 4194 to 4433 240 to 1       240/240
(100 %)
1 diff
(99.6 %id)
FN175789 breast carcinoma .b 4196 to 4246 50 to 1     Submitted on the opposite strand 50/51
(98 %)
1 diff
(98.1 %id)
BI042675 ovary .b 4199 to 4393 7 to 196       190/199
(95 %)
8 diff
(96.0 %id)
BI005221 head_normal .b 4202 to 4430 1 to 223   AAA   223/223
(100 %)
14 diff
(93.8 %id)
BF447110 Prostate .b 4207 to 4433 230 to 4       227/230
(98 %)
0 diff
(100 %id)
BI005220 head_normal .b 4208 to 4426 1 to 213       213/213
(100 %)
15 diff
(93.0 %id)
BI005683 head_normal .b 4210 to 4417 210 to 3       208/210
(99 %)
0 diff
(100 %id)
BI042864 ovary .b 4210 to 4430 1 to 224   AAA   224/224
(100 %)
5 diff
(97.8 %id)
BI042873 ovary .b 4210 to 4413 209 to 8       202/209
(96 %)
0 diff
(100 %id)
BI042878 ovary .b 4210 to 4424 246 to 35       212/246
(86 %)
0 diff
(100 %id)
W93594 heart .b 4212 to 4430 219 to 1   fully sequenced,   219/219
(100 %)
1 diff
(99.6 %id)
H64399 nose, olfactory epithelium .b 4220 to 4410 191 to 1   fully sequenced,   191/191
(100 %)
1 diff
(99.5 %id)
BI005692 head_normal .b 4222 to 4402 1 to 180       180/180
(100 %)
6 diff
(96.7 %id)
AA230283   .b 4265 to 4433 170 to 2       169/170
(99 %)
0 diff
(100 %id)
W24593.
matches multiple genes
lung .b 4271 to 4430 160 to 1   tiling clone, Submitted on the opposite strand, also hits gene WWTR1 160/160
(100 %)
1 diff
(99.4 %id)
BI043027 ovary .b 4306 to 4430 1 to 124   AAA   124/124
(100 %)
1 diff
(99.2 %id)
BG389674 embryonal carcinoma, cell line, testis .b 4314 to 4433 1 to 120       120/136
(88 %)
1 diff
(99.3 %id)
AI439504 lymph node, lymphoma, follicular mixed small and largecell .b 4319 to 4430 133 to 22   AAA   112/112
(100 %)
0 diff
(100 %id)
AK025220 colon .c 1 to 2009 2023 to 12 A201V tiling clone, available from FLJ, AAA Submitted on the opposite strand 1799/2012
(89 %)
48 diff
(97.7 %id)
AL597557   .d 1 to 343 1 to 343   tiling clone,   343/343
(100 %)
1 diff
(99.8 %id)
BC054046 Skin, melanotic melanoma. .d 60 to 1414 1 to 1355 A201V tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1355/1355
(100 %)
3 diff
(99.8 %id)
BU182910 melanotic melanoma, skin .d 61 to 859 1 to 807   available from MGC,   807/923
(87 %)
24 diff
(97.4 %id)
CD708374 normal nasopharynx .e 1 to 388 30 to 417   tiling clone,   388/417
(93 %)
6 diff
(98.6 %id)
CD709755 normal nasopharynx .e 8 to 597 23 to 612   tiling clone,   590/614
(96 %)
10 diff
(98.4 %id)
BM314486 Pancreas, Purified pancreatic islet .e 410 to 1032 17 to 639   tiling clone,   623/639
(97 %)
6 diff
(99.1 %id)
CD696880 normal nasopharynx .e 410 to 914 19 to 523       505/523
(96 %)
14 diff
(97.4 %id)
BE560332 Burkitt lymphoma, lymph .e 410 to 1138 18 to 749       732/968
(75 %)
30 diff
(97.0 %id)
AA173853   .e 422 to 898 1 to 482       480/483
(99 %)
8 diff
(98.4 %id)
BE896469 melanotic melanoma, skin .e 430 to 1142 1 to 712       712/890
(80 %)
21 diff
(97.7 %id)
AW239179 lung, cell line .e 433 to 942 1 to 510       510/510
(100 %)
0 diff
(100 %id)
FN075638 breast carcinoma .e 442 to 502 1 to 60       60/61
(98 %)
2 diff
(96.8 %id)
CD697311 normal nasopharynx .e 448 to 918 32 to 502       471/502
(93 %)
6 diff
(98.9 %id)
BU599687 mixed (pool of 40 RNAs) .e 537 to 1196 1 to 668       668/857
(77 %)
17 diff
(98.1 %id)
DA683534   .e 544 to 1068 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
FN143732 breast carcinoma .e 570 to 623 1 to 56       56/56
(100 %)
2 diff
(96.5 %id)
EC464711 Prostate .e 580 to 675 1 to 95       95/95
(100 %)
1 diff
(99.0 %id)
CD699564 normal nasopharynx .e 590 to 797 1 to 209       209/209
(100 %)
2 diff
(99.1 %id)
AA357063   .e 613 to 860 1 to 248       248/248
(100 %)
0 diff
(100 %id)
AW960309   .e 614 to 1224 1 to 611       611/611
(100 %)
4 diff
(99.4 %id)
BG957586 colon .e 629 to 1214 599 to 14       586/599
(97 %)
1 diff
(99.9 %id)
BG819347 anaplastic oligodendroglioma with 1p/19qloss, brain .e 659 to 1459 1 to 804       804/804
(100 %)
8 diff
(99.1 %id)
CD706678 normal nasopharynx .e 661 to 1233 22 to 594       573/594
(96 %)
11 diff
(98.2 %id)
EC467959 Prostate .e 693 to 794 1 to 102       102/102
(100 %)
0 diff
(100 %id)
BG031439 breast, mammary adenocarcinoma, cell line .e 725 to 1556 29 to 859       831/965
(86 %)
38 diff
(96.1 %id)
R10447 liver and spleen .e 728 to 977 1 to 250       250/252
(99 %)
1 diff
(99.7 %id)
CN425395 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 742 to 1387 1 to 647   tiling clone,   647/647
(100 %)
4 diff
(99.4 %id)
BE563583 adenocarcinoma, Pancreas .e 767 to 1587 1 to 814       814/891
(91 %)
16 diff
(98.3 %id)
BF912851 uterus_tumor .e 776 to 956 26 to 204       179/204
(87 %)
6 diff
(97.1 %id)
BE614254 leiomyosarcoma, uterus .e 796 to 1622 839 to 13       827/871
(94 %)
28 diff
(96.8 %id)
DA321561 hippocampus .e 813 to 1371 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BG008890 placenta_normal .e 825 to 955 131 to 2       130/131
(99 %)
0 diff
(100 %id)
BG005200 placenta_normal .e 826 to 1209 1 to 385       385/385
(100 %)
3 diff
(99.3 %id)
AW850922 colon .e 838 to 1316 1 to 479       479/479
(100 %)
5 diff
(99.0 %id)
AA173803   .e 1117 to 1650 535 to 1   tiling clone,   535/535
(100 %)
3 diff
(99.5 %id)
R11522 liver and spleen .e 1248 to 1652 413 to 1   tiling clone,   413/429
(96 %)
13 diff
(97.0 %id)
BP195751 brain .f 1 to 581 1 to 583   tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
CD703976 normal nasopharynx .f 26 to 692 38 to 704   tiling clone,   667/704
(94 %)
6 diff
(99.2 %id)
DB216595 trachea .f 471 to 1021 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BU940050 mixed (pool of 40 RNAs) .f 478 to 1122 1 to 663       663/848
(78 %)
25 diff
(97.1 %id)
T25339   .f 517 to 754 1 to 239       239/239
(100 %)
13 diff
(94.6 %id)
BP235197 coronary artery .f 523 to 1107 1 to 587       587/587
(100 %)
5 diff
(99.2 %id)
EC555337 Prostate .f 525 to 631 108 to 1       108/108
(100 %)
1 diff
(99.1 %id)
R27850 placenta .f 528 to 725 1 to 201       201/236
(85 %)
4 diff
(98.4 %id)
BE720266 head_neck .f 605 to 952 1 to 347       347/347
(100 %)
7 diff
(98.0 %id)
BF355273 head_neck .f 613 to 952 1 to 346       346/346
(100 %)
22 diff
(93.7 %id)
DW443780 Liver .f 617 to 829 17 to 229       213/229
(93 %)
6 diff
(97.4 %id)
BE700642 nervous_normal .f 638 to 923 298 to 13       286/298
(95 %)
0 diff
(100 %id)
BE208114 carcinoma cell line, cervix .f 691 to 1226 1 to 536   tiling clone, Submitted on the opposite strand 536/536
(100 %)
0 diff
(100 %id)
BM149134 leukopheresis .f 711 to 1165 1 to 454       454/485
(93 %)
10 diff
(98.0 %id)
DW414637 Liver .f 740 to 1037 17 to 315       299/315
(94 %)
6 diff
(98.1 %id)
BX472842   .g 1 to 382 1 to 382   tiling clone,   382/382
(100 %)
1 diff
(99.8 %id)
BG940703 blood .g 16 to 375 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
BM542794 leiomyosarcoma, uterus .g 23 to 1027 53 to 1080   tiling clone,   1028/1173
(87 %)
60 diff
(94.9 %id)
BG506448 lung .g 798 to 1505 1 to 706   tiling clone,   706/706
(100 %)
7 diff
(99.1 %id)
FN093719 breast carcinoma .g 1288 to 1374 88 to 1   tiling clone, Submitted on the opposite strand 88/89
(98 %)
3 diff
(96.7 %id)
AA279073 germinal center B cell .g 1430 to 1760 332 to 1   tiling clone,   332/332
(100 %)
2 diff
(99.4 %id)
FN052097 breast carcinoma .g 1451 to 1509 1 to 59       59/60
(98 %)
2 diff
(96.7 %id)
DA231205 brain .h 1 to 541 2 to 543   tiling clone, capped   542/542
(100 %)
3 diff
(99.5 %id)
FN080655 breast carcinoma .h 243 to 310 8 to 75       68/76
(89 %)
1 diff
(98.7 %id)
DA553995   .h 382 to 931 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
AA126681 uterus .h 750 to 990 1 to 242       242/247
(97 %)
3 diff
(98.8 %id)
AL598550   .h 763 to 1224 1 to 462   tiling clone,   462/463
(99 %)
3 diff
(99.4 %id)
FN138090 breast carcinoma .h 871 to 980 1 to 110       110/110
(100 %)
0 diff
(100 %id)
AW082726 pooled .h 878 to 1436 559 to 1       559/559
(100 %)
3 diff
(99.5 %id)
BF843650 head_neck .h 883 to 1305 423 to 1   tiling clone, Submitted on the opposite strand 423/423
(100 %)
6 diff
(98.6 %id)
AW182205 pooled .h 968 to 1436 470 to 1       470/470
(100 %)
4 diff
(99.2 %id)
AA767869 germinal center B cell .h 1033 to 1437 413 to 9       405/413
(98 %)
0 diff
(100 %id)
BU743212 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 1076 to 1438 1 to 363   tiling clone, AAA Submitted on the opposite strand 363/363
(100 %)
5 diff
(98.7 %id)
BM930010 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 1078 to 1438 378 to 18   AAA Submitted on the opposite strand 361/368
(98 %)
3 diff
(99.2 %id)
DA873491 Prostate .h 1317 to 1861 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BF378850 uterus .h 1373 to 1809 101 to 541       441/547
(80 %)
8 diff
(98.6 %id)
BE835426 prostate_normal .h 1412 to 1662 251 to 1   tiling clone,   251/389
(64 %)
2 diff
(99.5 %id)
BM153145 leukopheresis .h 1507 to 1973 1 to 466       466/466
(100 %)
4 diff
(99.2 %id)
BI058892 placenta_normal .h 1550 to 1948 4 to 402       399/402
(99 %)
6 diff
(98.6 %id)
BX503284 Liver .h 1555 to 2076 1 to 522       522/522
(100 %)
0 diff
(100 %id)
BM803628 leiomyosarcoma, uterus .h 1594 to 2450 1 to 860   tiling clone,   860/1064
(80 %)
9 diff
(99.2 %id)
BX482263   .h 1713 to 1952 1 to 240       240/240
(100 %)
0 diff
(100 %id)
DW445797 Liver .h 1785 to 1984 17 to 220       204/220
(92 %)
6 diff
(97.3 %id)
BE614072 leiomyosarcoma, uterus .h 1825 to 2423 1 to 600       600/605
(99 %)
4 diff
(99.4 %id)
BE177591 head_neck .h 1836 to 2454 631 to 16     Submitted on the opposite strand 621/631
(98 %)
3 diff
(99.6 %id)
BM701224 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 1902 to 2434 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
AI962359 pooled germ cell tumors .h 2033 to 2569 538 to 1       538/538
(100 %)
9 diff
(98.4 %id)
AW439498 serous papillary carcinoma, high grade, 2pooled tumors, uterus .h 2033 to 2567 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
AI336933 pooled germ cell tumors .h 2093 to 2569 477 to 1   tiling clone,   477/477
(100 %)
0 diff
(100 %id)
AI632604 pooled germ cell tumors .h 2093 to 2569 477 to 1       477/477
(100 %)
0 diff
(100 %id)
AI962168 pooled germ cell tumors .h 2103 to 2569 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AW002947 pooled germ cell tumors .h 2112 to 2569 458 to 1       458/458
(100 %)
6 diff
(98.7 %id)
DB318434   .h 2627 to 3205 579 to 1   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
BQ007714 Chondrosarcoma, Left Pelvis .h 2861 to 3637 781 to 6   tiling clone,   776/781
(99 %)
0 diff
(100 %id)
BF961488 nervous_normal .h 3013 to 3210 200 to 3       198/200
(99 %)
0 diff
(100 %id)
BG252404 adenocarcinoma, cell line, Liver .i 1 to 818 820 to 6   tiling clone, Submitted on the opposite strand 815/854
(95 %)
34 diff
(96.1 %id)
CN420242 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 164 to 897 1 to 734   tiling clone,   734/735
(99 %)
8 diff
(99.0 %id)
CU454328 epidermis .i 204 to 870 669 to 3   tiling clone, Submitted on the opposite strand 667/669
(99 %)
0 diff
(100 %id)
BE835653 prostate_normal .i 608 to 853 1 to 244       244/244
(100 %)
9 diff
(96.4 %id)
BF816609 colon_ins .j-u 1 to 588 8 to 593   tiling clone,   586/593
(98 %)
6 diff
(99.0 %id)
AV731501 hypothalamus .k-u 1 to 674 1 to 665 exact tiling clone,   665/665
(100 %)
15 diff
(97.8 %id)
CV367968 colon .k-u 237 to 741 6 to 516   tiling clone,   511/520
(98 %)
30 diff
(94.3 %id)
AA654699   .l 1 to 241 2 to 241 S42P S44V T45H F46S R47E ... tiling clone,   241/241
(100 %)
5 diff
(98.0 %id)
BM717460 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 166 to 728 1 to 563   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 563/563
(100 %)
2 diff
(99.7 %id)
BM674962 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 698 to 1297 617 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 599/599
(100 %)
1 diff
(99.9 %id)
AA758613   .m-u 1011 to 1298 288 to 1   tiling clone,   288/288
(100 %)
1 diff
(99.7 %id)
BE144933 head_neck .n-u 1 to 297 298 to 1 exact tiling clone, Submitted on the opposite strand 298/298
(100 %)
3 diff
(99.0 %id)
BF917661 uterus_tumor .n-u 116 to 578 15 to 477   tiling clone,   463/477
(97 %)
6 diff
(98.8 %id)
DA813606   .p 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
CN425397 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .p 128 to 557 1 to 430 exact     430/430
(100 %)
0 diff
(100 %id)
DA685999   .q 1 to 547 2 to 549 exact tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
DB091697 testis .r 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
CV376100 stomach_normal .s-u 1 to 466 1 to 464 C10V S11Q N12T V13W A14H ... tiling clone,   464/464
(100 %)
9 diff
(98.1 %id)
DW409973 Liver .t -9 to 319 8 to 336 exact     329/336
(97 %)
9 diff
(97.4 %id)
CD709404 normal nasopharynx .t 1 to 280 42 to 321 exact tiling clone,   288/321
(89 %)
7 diff
(97.9 %id)
DW443214 Liver .t 1 to 213 19 to 231 exact     221/231
(95 %)
7 diff
(97.0 %id)
CD684007 normal nasopharynx .t 1 to 244 19 to 262 exact     248/262
(94 %)
6 diff
(97.8 %id)
DW433550 Liver .t 1 to 245 17 to 262 exact     247/262
(94 %)
9 diff
(96.6 %id)
AU099250   .t 2 to 301 1 to 300 exact     300/300
(100 %)
0 diff
(100 %id)
BQ277554 mixed (pool of 40 RNAs) .t 2 to 355 1 to 355 exact tiling clone,   355/964
(36 %)
11 diff
(98.9 %id)
CD706032 normal nasopharynx .t 12 to 285 21 to 294 exact     274/294
(93 %)
7 diff
(97.7 %id)
DW431057 Liver .t 12 to 215 16 to 219 exact AAA   204/219
(93 %)
7 diff
(96.9 %id)
DW439582 Liver .t 12 to 215 16 to 219 exact AAA   204/219
(93 %)
7 diff
(96.9 %id)
BQ346143 nervous_tumor .t 18 to 454 527 to 92 A7T tiling clone,   436/536
(81 %)
7 diff
(98.7 %id)
BF749300 breast_normal .t 312 to 455 11 to 154   tiling clone,   144/166
(86 %)
10 diff
(94.0 %id)
AA570361 liposarcoma .u -8 to 262 27 to 297 V11M tiling clone,   271/332
(81 %)
11 diff
(96.7 %id)
N95192 lung Gene THRAP3, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
AA378704 synovial membrane Gene THRAP3, variant not shown         Suspected internal deletion, this clone was ignored    
BF995502 placenta_normal Gene THRAP3, variant not shown              
BG950676 colon Gene THRAP3, variant not shown         This clone was ignored    
DB305590 brain Gene THRAP3, variant not shown         This clone was ignored    
DA233714 brain Gene THRAP3, variant not shown       capped This clone was ignored    
AV733517 pheochromocytoma Gene THRAP3, variant not shown         Suspected internal deletion, this clone was ignored    
BX643171   Gene THRAP3, variant not shown              
T81877 liver and spleen Gene THRAP3, variant not shown              
N26877 melanocyte Gene THRAP3, variant not shown         This clone was ignored    
N39984 melanocyte Gene THRAP3, variant not shown         This clone was ignored    
W32760 parathyroid gland, parathyroid tumor Gene THRAP3, variant not shown         This clone was ignored    
W32761 parathyroid gland, parathyroid tumor Gene THRAP3, variant not shown         This clone was ignored    
AI694056 carcinoid, lung Gene THRAP3, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BF941552 Prostate Gene THRAP3, variant not shown         Suspected internal deletion, this clone was ignored    
BG569934 lung Gene THRAP3, variant not shown         This clone was ignored    
BQ183670 Knee, Osteoarthritic Cartilage Gene THRAP3, variant not shown       AAA This clone was ignored    
CB988799 Human Placenta, placenta Gene THRAP3, variant not shown         This clone was ignored    
DB010500 colon, tumor tissue Gene THRAP3, variant not shown       capped      
DB335324 colon, tumor tissue Gene THRAP3, variant not shown              
TI_149275717   Gene THRAP3, variant not shown       AAA This clone was ignored    
DB168468 kidney, tumor tissue Gene THRAP3, variant not shown       capped This clone was ignored    
DB347219 kidney, tumor tissue Gene THRAP3, variant not shown         This clone was ignored    
BU676770 lung, Primary Lung Epithelial Cells Gene THRAP3, variant not shown       AAA This clone was ignored    
CA419642 Bone, Human Chondrosarcoma Cell Line Gene THRAP3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB263844 uterus Gene THRAP3, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l, .m-u, .n-u, .o-u, .p, .q, .r, .s-u, .t, .u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI