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Gene THNSL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
101 supporting clones for gene THNSL1 back to top
cDNA accession
Links to the sequence		 Tissue

most 5' clones
in red		 Match
mRNA		 From bp
to bp
in mRNA		 From bp
to bp
in accs.		 Clone encodes
complete protein
(with AA variation)		 Features Anomalies
detected by
AceView		 Accession
match over
(% length)		 Base differences
relative to genome
(% identity)
AA758921   .a 3929 to 4140 213 to 2       212/213
(99 %)		 0 diff
(100 %id)
AA383070 testis .a 1446 to 1617 1 to 172       172/172
(100 %)		 2 diff
(98.9 %id)
AK025655   .a 2148 to 4138 1 to 1992   tiling clone, available from FLJ, AAA   1992/1992
(100 %)		 1 diff
(100.0 %id)
AK094362 cerebellum .a 1152 to 3007 1 to 1856   available from FLJ,   1856/1856
(100 %)		 3 diff
(99.9 %id)
AK125249   .a 443 to 2999 1 to 2557 exact tiling clone, available from FLJ,   2557/2557
(100 %)		 0 diff
(100 %id)
BC035132 Brain, hippocampus .a 450 to 2999 1 to 2550 T94N H705R available from MGC, AAA   2550/2550
(100 %)		 2 diff
(100.0 %id)
BF170587 blood .a 406 to 618 1 to 210       210/210
(100 %)		 5 diff
(97.7 %id)
BQ303423 breast .a 2143 to 2592 9 to 457       449/457
(98 %)		 6 diff
(98.7 %id)
DA063137 cerebellum .a 1153 to 1721 2 to 570   capped   569/569
(100 %)		 2 diff
(99.7 %id)
DB297124 cerebellum .a 2471 to 3007 537 to 1       537/537
(100 %)		 0 diff
(100 %id)
DA216442 brain .a 400 to 951 2 to 553   capped   552/552
(100 %)		 1 diff
(99.9 %id)
DA247726 brain .b 57 to 525 2 to 470   capped   469/469
(100 %)		 1 diff
(99.8 %id)
DA312012 hippocampus .a 420 to 963 2 to 545   capped   544/544
(100 %)		 0 diff
(100 %id)
DA317760 hippocampus .a 372 to 911 2 to 541   capped   540/540
(100 %)		 0 diff
(100 %id)
DA332729 hippocampus .a 454 to 1051 2 to 599   capped   598/598
(100 %)		 0 diff
(100 %id)
BX116415 whole brain .a 2949 to 3470 1 to 522   tiling clone,   522/522
(100 %)		 0 diff
(100 %id)
BX647989 human endometrium .a 458 to 4138 1 to 3681 A254V available from DKFZ, AAA   3681/3681
(100 %)		 4 diff
(99.9 %id)
F09105 brain, total brain .a 3852 to 4138 287 to 1       287/287
(100 %)		 0 diff
(100 %id)
F11442 brain, total brain .a 3008 to 3360 1 to 353       353/353
(100 %)		 0 diff
(100 %id)
CN259295 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1945 to 2702 1 to 758       758/758
(100 %)		 1 diff
(99.9 %id)
CN282689 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 402 to 1139 1 to 738       738/738
(100 %)		 2 diff
(99.8 %id)
CR457346   .a 2263 to 2927 1 to 665       665/669
(99 %)		 1 diff
(99.9 %id)
CR615274 Neuroblastoma Cot 25-normalized .a 1588 to 2971 1 to 1384       1384/1384
(100 %)		 0 diff
(100 %id)
BX394199 Neuroblastoma Cot 25-normalized .a 2257 to 2971 703 to 1   fully sequenced,   703/703
(100 %)		 2 diff
(99.8 %id)
BX394200 Neuroblastoma Cot 25-normalized .a 1588 to 2287 1 to 696   fully sequenced,   696/696
(100 %)		 1 diff
(99.9 %id)
BX375707 Neuroblastoma Cot 25-normalized .a 2474 to 3000 1 to 527       527/527
(100 %)		 0 diff
(100 %id)
DA438861 tongue, tumor tissue .a 420 to 1015 2 to 597   capped   596/596
(100 %)		 0 diff
(100 %id)
CV030135 mixed .a 2263 to 2815 1 to 553       553/553
(100 %)		 0 diff
(100 %id)
BX642373   .a 458 to 1090 1 to 633       633/635
(99 %)		 1 diff
(99.9 %id)
BX642374   .a 3591 to 4140 551 to 2   tiling clone,   550/551
(99 %)		 0 diff
(100 %id)
DT220120 brain .a 2066 to 2705 1 to 636       636/636
(100 %)		 6 diff
(99.1 %id)
EC490447 Prostate .a 2832 to 2925 1 to 91       91/91
(100 %)		 5 diff
(94.6 %id)
EC504631 Prostate .a 1516 to 1616 1 to 99       99/99
(100 %)		 4 diff
(96.0 %id)
EC562254 Prostate .a 1515 to 1616 1 to 102       102/102
(100 %)		 0 diff
(100 %id)
DA486150 brain .a 436 to 985 2 to 552   capped   551/551
(100 %)		 2 diff
(99.7 %id)
DA490994 brain .a 423 to 941 2 to 520   capped   519/519
(100 %)		 0 diff
(100 %id)
DA496769 brain .a 359 to 927 2 to 570   capped   569/569
(100 %)		 1 diff
(99.9 %id)
DA500171 brain .a 444 to 968 2 to 526   capped   525/525
(100 %)		 0 diff
(100 %id)
DA522032 brain .a 451 to 936 2 to 487   capped   486/486
(100 %)		 0 diff
(100 %id)
DB459052 testis .a 421 to 901 1 to 481       481/481
(100 %)		 0 diff
(100 %id)
DB461126 testis .a 399 to 872 1 to 474       474/474
(100 %)		 1 diff
(99.8 %id)
DB526542 testis .a 2544 to 2993 1 to 450     Submitted on the opposite strand 450/450
(100 %)		 1 diff
(99.8 %id)
DB462072 testis .a 450 to 923 1 to 474       474/474
(100 %)		 0 diff
(100 %id)
DB527504 testis .a 2520 to 2993 1 to 474     Submitted on the opposite strand 474/474
(100 %)		 1 diff
(99.8 %id)
DB464075 hippocampus .a 452 to 905 1 to 452       452/461
(98 %)		 3 diff
(99.4 %id)
DB530173 hippocampus .a 3704 to 4138 1 to 437     Submitted on the opposite strand 437/437
(100 %)		 5 diff
(98.9 %id)
DB470307 hippocampus .a 457 to 893 1 to 438       438/438
(100 %)		 6 diff
(98.7 %id)
DB538415 hippocampus .a 3701 to 4138 4 to 441     Submitted on the opposite strand 438/442
(99 %)		 9 diff
(98.0 %id)
DB479803 hippocampus .a 399 to 645 1 to 246       246/246
(100 %)		 3 diff
(98.8 %id)
DB548534 hippocampus .a 2542 to 2993 1 to 452     Submitted on the opposite strand 452/452
(100 %)		 1 diff
(99.8 %id)
BP239374 Liver .a 2148 to 2697 1 to 551       551/551
(100 %)		 3 diff
(99.5 %id)
DA573337   .a 444 to 1156 2 to 714   capped   713/773
(92 %)		 3 diff
(99.7 %id)
DB318910   .a 2443 to 2999 557 to 1       557/557
(100 %)		 1 diff
(99.9 %id)
R53379 whole brain .a 2958 to 3366 1 to 420       420/430
(97 %)		 19 diff
(95.6 %id)
R53980 whole brain .a 3744 to 4139 408 to 12   AAA   397/398
(99 %)		 4 diff
(99.0 %id)
R48248 breast .a 2696 to 2998 310 to 1       310/398
(77 %)		 8 diff
(98.0 %id)
R48345 breast .a 2095 to 2397 1 to 309       309/452
(68 %)		 7 diff
(98.5 %id)
AA436735   .a 2218 to 2716 1 to 499       499/499
(100 %)		 1 diff
(99.8 %id)
AA599699   .a 3769 to 4138 370 to 1       370/370
(100 %)		 0 diff
(100 %id)
AA622484 colon, colon tumor RER+ .a 2257 to 2992 736 to 1       736/736
(100 %)		 7 diff
(99.1 %id)
AA868786 pooled .a 2353 to 2992 640 to 1       640/640
(100 %)		 1 diff
(99.9 %id)
AI474041 Kidney .a 2627 to 2999 396 to 24   AAA   373/373
(100 %)		 2 diff
(99.5 %id)
AI613315 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2859 to 2993 135 to 1       135/135
(100 %)		 0 diff
(100 %id)
AI686089 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2449 to 3002 559 to 13   AAA   547/550
(99 %)		 36 diff
(93.5 %id)
AI809864 pooled .a 2335 to 3000 667 to 3       665/667
(99 %)		 0 diff
(100 %id)
AI872748 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2698 to 2999 309 to 1       309/309
(100 %)		 7 diff
(97.8 %id)
AI949702 2 pooled tumors (clear cell type), Kidney .a 2359 to 2949 651 to 61   AAA   591/613
(96 %)		 0 diff
(100 %id)
AI955080 pooled germ cell tumors .a 2464 to 2992 529 to 1       529/529
(100 %)		 1 diff
(99.9 %id)
AI990734 pooled germ cell tumors .a 2443 to 2992 571 to 22   AAA   550/562
(97 %)		 2 diff
(99.7 %id)
BE466663 pooled germ cell tumors .a 2527 to 2992 466 to 1       466/466
(100 %)		 6 diff
(98.8 %id)
BE749130 carcinoma cell line, cervix .b 83 to 692 1 to 613 I13T R73T I74N I75N G76R ... tiling clone,   613/771
(79 %)		 18 diff
(97.7 %id)
BC016697 Brain, glioblastoma .a 1884 to 2999 4 to 1119   available from MGC, AAA   1116/1116
(100 %)		 1 diff
(100.0 %id)
BF247064 brain, glioblastoma .a 1884 to 2411 1 to 526   available from MGC,   526/873
(60 %)		 14 diff
(98.4 %id)
BI549966 brain, hippocampus .a 445 to 1180 1 to 735       735/735
(100 %)		 5 diff
(99.4 %id)
BM128490 Islets of Langerhans, Pancreas .a 3610 to 4140 532 to 2       531/532
(99 %)		 0 diff
(100 %id)
BM128740 Islets of Langerhans, Pancreas .a 2762 to 3342 1 to 581       581/581
(100 %)		 3 diff
(99.5 %id)
BM273224 Islets of Langerhans, Pancreas .a 2443 to 3000 561 to 4       558/561
(99 %)		 0 diff
(100 %id)
BM354216 Islets of Langerhans, Pancreas .a 1544 to 2109 1 to 566       566/566
(100 %)		 1 diff
(99.9 %id)
CK820126 Islets of Langerhans, Pancreas .a 2407 to 3000 596 to 4       593/596
(99 %)		 0 diff
(100 %id)
CK820127 Islets of Langerhans, Pancreas .a 1528 to 2140 1 to 613       613/613
(100 %)		 1 diff
(99.9 %id)
BU160222 testis .a 2116 to 2879 1 to 769       769/813
(94 %)		 16 diff
(98.1 %id)
BU784905 Pancreas, Purified pancreatic islet .a 2388 to 2992 605 to 1   fully sequenced,   605/605
(100 %)		 0 diff
(100 %id)
BU785162 Pancreas, Purified pancreatic islet .a 2281 to 2418 1 to 142   fully sequenced,   142/142
(100 %)		 0 diff
(100 %id)
BU790063 Pancreas, Purified pancreatic islet .a 2491 to 2992 502 to 1   fully sequenced,   502/502
(100 %)		 1 diff
(99.9 %id)
BU790362 Pancreas, Purified pancreatic islet .a 2268 to 2521 5 to 258   fully sequenced,   254/258
(98 %)		 5 diff
(98.1 %id)
TI_44169663   .a 443 to 1180 83 to 819       737/819
(89 %)		 8 diff
(99.1 %id)
DA627487 Kidney .a 667 to 1200 2 to 535   capped   534/534
(100 %)		 0 diff
(100 %id)
DA631049 Kidney .a 451 to 1023 2 to 574   capped   573/573
(100 %)		 0 diff
(100 %id)
CB163644 Liver .a 2043 to 2650 1 to 605       605/605
(100 %)		 8 diff
(98.7 %id)
NM_024838.4   .a 371 to 4138 1 to 3768 exact RefSeq, AAA   3768/3768
(100 %)		 0 diff
(100 %id)
DA684482   .a 451 to 993 2 to 544   capped   543/543
(100 %)		 0 diff
(100 %id)
DA684525   .a 451 to 985 2 to 536   capped   535/535
(100 %)		 1 diff
(99.9 %id)
DA694173   .b 47 to 616 2 to 571   tiling clone, capped   570/570
(100 %)		 0 diff
(100 %id)
DA725425   .a 436 to 941 2 to 507   capped   506/506
(100 %)		 0 diff
(100 %id)
DA746933   .a 448 to 1018 2 to 572   capped   571/571
(100 %)		 2 diff
(99.7 %id)
DA757346   .a 454 to 992 2 to 540   capped   539/539
(100 %)		 0 diff
(100 %id)
BM741326 stomach .a 2255 to 2796 1 to 540       540/540
(100 %)		 1 diff
(99.9 %id)
BM782407 stomach .a 2255 to 2899 1 to 645       645/645
(100 %)		 0 diff
(100 %id)
BM799366 Ascites, stomach .a 1448 to 2001 1 to 554       554/554
(100 %)		 1 diff
(99.9 %id)
TI_1948090045   .a 2263 to 2622 137 to 496   fully sequenced,   360/388
(92 %)		 6 diff
(98.5 %id)
TI_1948090046   .a 2592 to 2944 464 to 111   fully sequenced,   354/366
(96 %)		 9 diff
(97.6 %id)
TI_1948090167   .a 2288 to 2568 154 to 434   fully sequenced,   281/335
(83 %)		 0 diff
(100 %id)
TI_1948090168   .a 2538 to 2949 517 to 106   fully sequenced,   412/420
(98 %)		 9 diff
(97.9 %id)
TI_1948090305   .a 2257 to 2575 135 to 453   fully sequenced,   319/341
(93 %)		 5 diff
(98.6 %id)
TI_1948090306   .a 2545 to 2944 512 to 112   fully sequenced,   401/413
(97 %)		 9 diff
(97.9 %id)
TI_1948090430   .a 2257 to 2601 126 to 470   fully sequenced,   345/368
(93 %)		 5 diff
(98.7 %id)
TI_1948090431   .a 2571 to 2944 485 to 111   fully sequenced,   375/387
(96 %)		 9 diff
(97.7 %id)
DA938818 Spleen .a 485 to 963 101 to 579   capped   479/578
(82 %)		 6 diff
(99.0 %id)
DB011794 esophageal, tumor tissue .a 442 to 1000 2 to 560   capped   559/559
(100 %)		 0 diff
(100 %id)
DB043780 testis .b 1 to 573 2 to 575   tiling clone, capped   574/574
(100 %)		 1 diff
(99.9 %id)
DB084235 testis .a 1 to 515 2 to 518   tiling clone, capped   517/517
(100 %)		 9 diff
(98.3 %id)
TI_159703790   .a 2191 to 2993 908 to 116   AAA   793/957
(82 %)		 16 diff
(98.4 %id)
BM675000 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2380 to 3001 638 to 17   fully sequenced, AAA   622/622
(100 %)		 0 diff
(100 %id)
BM717507 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1886 to 2410 1 to 526   fully sequenced,   526/526
(100 %)		 1 diff
(99.9 %id)
BU740152.
matches multiple genes		 eye, fetal eye .a 2433 to 2993 579 to 19   AAA also hits gene sleezor 561/561
(100 %)		 1 diff
(99.9 %id)
BU740181.
matches multiple genes		 eye, fetal eye .a 2494 to 2993 518 to 19   AAA also hits gene sleezor 500/500
(100 %)		 1 diff
(99.8 %id)
BM741326 stomach .a 2255 to 2796 1 to 540       540/540
(100 %)		 1 diff
(99.9 %id)
BM782407 stomach .a 2255 to 2899 1 to 645       645/645
(100 %)		 0 diff
(100 %id)
BM799366 S22SNU16-11-F12 THNSL1.aAug10 2001 554 S22SNU16-11-F12     554 1
BM799366 S22SNU16-11-F12 THNSL1.aAug10 2001 554 S22SNU16-11-F12     554 1
TI_1948090045 SC_11029_1_G4 THNSL1.aAug10 2622 496 SC_11029_1_G4     360 6
TI_1948090046 SC_11029_1_G4 THNSL1.aAug10 2944 111 SC_11029_1_G4     354 9
TI_1948090167 SC_11029_2_G4 THNSL1.aAug10 2568 434 SC_11029_2_G4     281 0
TI_1948090168 SC_11029_2_G4 THNSL1.aAug10 2949 106 SC_11029_2_G4     412 9
TI_1948090305 SC_11029_3_G4 THNSL1.aAug10 2575 453 SC_11029_3_G4     319 5
TI_1948090306 SC_11029_3_G4 THNSL1.aAug10 2944 112 SC_11029_3_G4     401 9
TI_1948090430 SC_11029_4_G4 THNSL1.aAug10 2601 470 SC_11029_4_G4     345 5
TI_1948090431 SC_11029_4_G4 THNSL1.aAug10 2944 111 SC_11029_4_G4     375 9
DA938818 SPLEN2012160 THNSL1.aAug10 963 579 SPLEN2012160     479 6
DB011794 TESOP2000033 THNSL1.aAug10 1000 560 TESOP2000033     559 0
DB043780 TESTI2031587 THNSL1.bAug10 573 575 TESTI2031587     574 1
DB084235 TESTI4031128 THNSL1.aAug10 515 518 TESTI4031128     517 9
TI_159703790 TI_159703790 THNSL1.aAug10 2993 116 TI_159703790     793 16
BM675000 UI-E-EJ0-ahn-m-18-0-UI THNSL1.aAug10 3001 17 UI-E-EJ0-ahn-m-18-0-UI     622 0
BM675000 UI-E-EJ0-ahn-m-18-0-UI THNSL1.aAug10 3001 17 UI-E-EJ0-ahn-m-18-0-UI     622 0
BM717507 UI-E-EJ0-ahn-m-18-0-UI THNSL1.aAug10 2410 526 UI-E-EJ0-ahn-m-18-0-UI     526 1
BM717507 UI-E-EJ0-ahn-m-18-0-UI THNSL1.aAug10 2410 526 UI-E-EJ0-ahn-m-18-0-UI     526 1
BU740152 UI-E-EO0-ahx-c-24-0-UI THNSL1.aAug10 2993 19 UI-E-EO0-ahx-c-24-0-UI     561 1
BU740152 UI-E-EO0-ahx-c-24-0-UI THNSL1.aAug10 2993 19 UI-E-EO0-ahx-c-24-0-UI     561 1
BU740181 UI-E-EO0-ahx-i-24-0-UI THNSL1.aAug10 2993 19 UI-E-EO0-ahx-i-24-0-UI     500 1
BU740181 UI-E-EO0-ahx-i-24-0-UI THNSL1.aAug10 2993 19 UI-E-EO0-ahx-i-24-0-UI     500 1
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI