cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AA305110 | colon | .a | 2797 to 3185 | 1 to 389 | tiling clone, | 389/389 (100 %) | 0 diff (100 %id) | ||
AA330397 | .b | 3479 to 3795 | 1 to 321 | 321/326 (98 %) | 5 diff (98.5 %id) | ||||
AA333595 | Embryo, 8 weeks | .a | 167 to 461 | 1 to 295 | 295/295 (100 %) | 0 diff (100 %id) | |||
AK026973 | .a | 670 to 2963 | 1 to 2294 | available from FLJ, AAA | 2294/2294 (100 %) | 7 diff (99.7 %id) | |||
AK225333 | Liver | .a | 663 to 2963 | 1 to 2301 | tiling clone, AAA | 2301/2301 (100 %) | 4 diff (99.9 %id) | ||
BQ308135 | breast | .a | 2006 to 2383 | 402 to 27 | 376/402 (93 %) | 0 diff (100 %id) | |||
DA099391 | cerebellum | .a | 43 to 594 | 2 to 553 | capped | 552/552 (100 %) | 2 diff (99.7 %id) | ||
DA126758 | cerebellum | .a | 593 to 1169 | 2 to 579 | capped | 578/578 (100 %) | 3 diff (99.5 %id) | ||
DA192233 | amygdala | .a | 108 to 615 | 2 to 509 | capped | 508/508 (100 %) | 1 diff (99.9 %id) | ||
DA201923 | brain | .b | 3263 to 3774 | 2 to 513 | capped | 512/512 (100 %) | 3 diff (99.5 %id) | ||
DA215787 | brain | .b | 23 to 572 | 2 to 551 | capped | 550/550 (100 %) | 0 diff (100 %id) | ||
DA232766 | brain | .f | 1 to 557 | 2 to 558 | exact | tiling clone, capped | 557/557 (100 %) | 4 diff (99.3 %id) | |
DA239335 | brain | .a | 151 to 714 | 2 to 565 | capped | 564/564 (100 %) | 0 diff (100 %id) | ||
DA317935 | hippocampus | .a | 35 to 576 | 2 to 543 | capped | 542/542 (100 %) | 1 diff (99.9 %id) | ||
BX092524 | .a | 2466 to 3136 | 1 to 671 | tiling clone, | 671/671 (100 %) | 2 diff (99.8 %id) | |||
CF272720 | .a | 313 to 879 | 568 to 1 | Submitted on the opposite strand | 568/571 (99 %) | 2 diff (99.7 %id) | |||
CN288029 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .a | 108 to 615 | 1 to 507 | 507/507 (100 %) | 1 diff (99.9 %id) | |||
CN413994 | embryonic stem cells, cell lines H1, H7, andH9 | .c | 1 to 700 | 1 to 700 | exact | tiling clone, | 700/700 (100 %) | 0 diff (100 %id) | |
CR743750 | pooled | .d | 127 to 644 | 8 to 525 | tiling clone, | 518/525 (98 %) | 6 diff (98.9 %id) | ||
BX501914 | Liver | .a | 119 to 686 | 1 to 568 | 568/568 (100 %) | 5 diff (99.2 %id) | |||
EH339402 | .a | 1605 to 1678 | 1 to 73 | 73/73 (100 %) | 1 diff (98.7 %id) | ||||
DA484684 | brain | .a | 1934 to 2491 | 2 to 561 | capped | 560/560 (100 %) | 2 diff (99.7 %id) | ||
DA510599 | brain | .a | 1456 to 2038 | 2 to 585 | capped | 584/584 (100 %) | 1 diff (99.9 %id) | ||
FN076186 | breast carcinoma | .b | 3302 to 3407 | 1 to 107 | 107/109 (98 %) | 2 diff (98.2 %id) | |||
FN090283 | breast carcinoma | .b | 3367 to 3461 | 1 to 93 | 93/93 (100 %) | 4 diff (95.7 %id) | |||
FN122634 | breast carcinoma | .a | 428 to 543 | 117 to 1 | Submitted on the opposite strand | 117/117 (100 %) | 3 diff (97.5 %id) | ||
FN162287 | breast carcinoma | .b | 3656 to 3772 | 1 to 116 | 116/116 (100 %) | 1 diff (99.2 %id) | |||
DB457036 | testis | .a | 44 to 746 | 1 to 704 | 704/708 (99 %) | 3 diff (99.6 %id) | |||
DB522475 | testis | .a | 3222 to 3908 | 1 to 686 | tiling clone, AAA | Submitted on the opposite strand | 686/686 (100 %) | 6 diff (99.2 %id) | |
BP240599 | Liver | .a | 663 to 1231 | 1 to 569 | 569/571 (99 %) | 5 diff (99.2 %id) | |||
N22590 | cochlea, ear | .b | 3648 to 3857 | 210 to 1 | 210/210 (100 %) | 0 diff (100 %id) | |||
AA194021 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .a | 2493 to 3013 | 520 to 1 | 520/529 (98 %) | 11 diff (98.0 %id) | |||
AA194210 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .a | 1302 to 1815 | 1 to 537 | 537/623 (86 %) | 25 diff (96.0 %id) | |||
AA398052 | .b | 3386 to 3812 | 1 to 426 | 426/426 (100 %) | 2 diff (99.6 %id) | ||||
AA443293 | .a | 3457 to 3909 | 455 to 3 | 453/455 (99 %) | 0 diff (100 %id) | ||||
AA443424 | .a | 2466 to 2995 | 1 to 530 | 530/530 (100 %) | 1 diff (99.9 %id) | ||||
AA612962 | colon, colon tumor RER+ | .a | 3656 to 4071 | 416 to 1 | tiling clone, | 416/416 (100 %) | 1 diff (99.8 %id) | ||
AA659374 | metastatic prostate bone lesion | .a | 2080 to 2390 | 1 to 311 | 311/311 (100 %) | 1 diff (99.7 %id) | |||
AA687317 | germinal center B cell | .b | 3517 to 3856 | 358 to 19 | AAA | 340/340 (100 %) | 1 diff (99.8 %id) | ||
AA761642 | germinal center B cell | .a | 2875 to 3214 | 11 to 350 | tiling clone, | Submitted on the opposite strand | 340/350 (97 %) | 6 diff (98.3 %id) | |
AI219532 | pooled | .d | 650 to 1088 | 441 to 3 | tiling clone, | 439/441 (99 %) | 0 diff (100 %id) | ||
AI670896 | Kidney | .b | 3691 to 4164 | 482 to 9 | tiling clone, | 474/482 (98 %) | 0 diff (100 %id) | ||
AI809797 | pooled | .b | 3336 to 3856 | 534 to 12 | AAA | 523/523 (100 %) | 4 diff (99.3 %id) | ||
AI769234 | pooled | .b | 3774 to 3856 | 99 to 17 | AAA | 83/83 (100 %) | 0 diff (100 %id) | ||
AW196610 | pooled germ cell tumors | .b | 3521 to 3856 | 349 to 14 | tiling clone, AAA | 336/336 (100 %) | 0 diff (100 %id) | ||
AW301198 | Kidney | .b | 3380 to 3854 | 480 to 6 | 475/480 (98 %) | 0 diff (100 %id) | |||
AW301218 | Kidney | .b | 3343 to 3856 | 514 to 1 | tiling clone, | 514/514 (100 %) | 3 diff (99.5 %id) | ||
CB051574 | leiomyosarcoma, soft tissue | .a | 1921 to 2587 | 695 to 31 | tiling clone, AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 665/695 (95 %) | 0 diff (100 %id) | |
BQ008448 | Chondrosarcoma, Left Pubic Bone | .a | 3209 to 3908 | 718 to 19 | tiling clone, AAA | 700/700 (100 %) | 3 diff (99.6 %id) | ||
BQ213538 | embryonal carcinoma, cell line, testis | .a | 3269 to 3792 | 23 to 548 | 526/1317 (39 %) | 19 diff (98.6 %id) | |||
CX873569 | embryonic stem | .e | 1 to 825 | 1 to 827 | exact | tiling clone, | 827/827 (100 %) | 1 diff (99.9 %id) | |
CD653593 | Embryonic Stem cells | .a | 137 to 881 | 54 to 798 | 745/856 (87 %) | 9 diff (99.0 %id) | |||
CD644587 | Embryonic Stem cells | .a | 102 to 881 | 53 to 830 | 778/864 (90 %) | 12 diff (98.7 %id) | |||
BC131722 | PCR rescued clones | .b | 1 to 3348 | 1 to 3348 | M140I N668D | tiling clone, | 3348/3348 (100 %) | 3 diff (100.0 %id) | |
NM_024672.4 | .a | 34 to 4071 | 1 to 4038 | exact | RefSeq, | 4038/4038 (100 %) | 0 diff (100 %id) | ||
DA723893 | .a | 110 to 675 | 2 to 567 | capped | 566/566 (100 %) | 1 diff (99.9 %id) | |||
DA864674 | placenta | .a | 73 to 560 | 2 to 492 | capped | 491/491 (100 %) | 4 diff (99.2 %id) | ||
DA866505 | Prostate | .d | 1 to 541 | 2 to 543 | tiling clone, capped | 542/542 (100 %) | 1 diff (99.9 %id) | ||
DB062174 | testis | .a | 101 to 597 | 2 to 498 | capped | 497/497 (100 %) | 1 diff (99.8 %id) | ||
DB062908 | testis | .d | 283 to 820 | 2 to 540 | tiling clone, capped | 539/539 (100 %) | 1 diff (99.9 %id) | ||
DB065648 | testis | .a | 54 to 627 | 2 to 575 | tiling clone, capped | 574/574 (100 %) | 0 diff (100 %id) | ||
DB069654 | testis | .a | 57 to 587 | 2 to 534 | capped | 533/533 (100 %) | 2 diff (99.7 %id) | ||
DB076793 | testis | .a | 54 to 622 | 2 to 571 | capped | 570/570 (100 %) | 2 diff (99.7 %id) | ||
DB086279 | testis | .d | 489 to 1052 | 2 to 566 | L30P V31C E32R E33R K34E ... | capped | 565/565 (100 %) | 1 diff (99.9 %id) | |
DB087652 | testis | .a | 475 to 1024 | 2 to 552 | capped | 551/551 (100 %) | 3 diff (99.5 %id) | ||
DB093127 | testis | .a | 1 to 546 | 2 to 548 | tiling clone, capped | 547/547 (100 %) | 1 diff (99.9 %id) | ||
DB154392 | thymus | .a | 526 to 1112 | 2 to 588 | tiling clone, capped | 587/587 (100 %) | 2 diff (99.7 %id) | ||
TI_149313780 | .a | 889 to 1804 | 991 to 81 | tiling clone, AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 911/1076 (84 %) | 0 diff (100 %id) | ||
DB228932 | trachea | .a | 53 to 651 | 2 to 601 | capped | 600/600 (100 %) | 2 diff (99.7 %id) | ||
DB236118 | trachea | .a | 54 to 637 | 2 to 586 | capped | 585/585 (100 %) | 1 diff (99.9 %id) | ||
CB305628 | lung, Primary Lung Cystic Fibrosis EpithelialCells | .a | 1075 to 1804 | 741 to 12 | AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 730/741 (98 %) | 0 diff (100 %id) | |
DB283090 | uterus | .a | 73 to 612 | 2 to 541 | capped | 540/540 (100 %) | 0 diff (100 %id) | ||
DB292659 | uterus | .a | 110 to 652 | 2 to 544 | capped | 543/543 (100 %) | 0 diff (100 %id) | ||
AK091412 | brain | .a | 526 to 1112 | 2 to 588 | tiling clone, available from FLJ, | This clone was ignored | 587/587 (100 %) | 2 diff (99.7 %id) | |
AX746965 | .a | 889 to 1804 | 991 to 81 | tiling clone, | This clone was ignored | 911/1076 (84 %) | 0 diff (100 %id) | ||
BF802603 | colon_ins | .a | 53 to 651 | 2 to 601 | 600/600 (100 %) | 2 diff (99.7 %id) | |||
BX648134 | human testis | .a | 54 to 637 | 2 to 586 | available from DKFZ, AAA | This clone was ignored | 585/585 (100 %) | 1 diff (99.9 %id) | |
DA494504 | brain | .a | 1075 to 1804 | 741 to 12 | capped | This clone was ignored | 730/741 (98 %) | 0 diff (100 %id) | |
DB315562 | brain | .a | 1075 to 1804 | 741 to 12 | This clone was ignored | 730/741 (98 %) | 0 diff (100 %id) | ||
DB070181 | testis | .a | 73 to 612 | 2 to 541 | capped | This clone was ignored | 540/540 (100 %) | 0 diff (100 %id) | |
DB292659 | uterus | .a | 110 to 652 | 2 to 544 | capped | 543/543 (100 %) | 0 diff (100 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e, .f, .g-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |