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Gene THAP9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene THAP9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA305110 colon .a 2797 to 3185 1 to 389   tiling clone,   389/389
(100 %)
0 diff
(100 %id)
AA330397   .b 3479 to 3795 1 to 321       321/326
(98 %)
5 diff
(98.5 %id)
AA333595 Embryo, 8 weeks .a 167 to 461 1 to 295       295/295
(100 %)
0 diff
(100 %id)
AK026973   .a 670 to 2963 1 to 2294   available from FLJ, AAA   2294/2294
(100 %)
7 diff
(99.7 %id)
AK225333 Liver .a 663 to 2963 1 to 2301   tiling clone, AAA   2301/2301
(100 %)
4 diff
(99.9 %id)
BQ308135 breast .a 2006 to 2383 402 to 27       376/402
(93 %)
0 diff
(100 %id)
DA099391 cerebellum .a 43 to 594 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA126758 cerebellum .a 593 to 1169 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
DA192233 amygdala .a 108 to 615 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
DA201923 brain .b 3263 to 3774 2 to 513   capped   512/512
(100 %)
3 diff
(99.5 %id)
DA215787 brain .b 23 to 572 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA232766 brain .f 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
4 diff
(99.3 %id)
DA239335 brain .a 151 to 714 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA317935 hippocampus .a 35 to 576 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BX092524   .a 2466 to 3136 1 to 671   tiling clone,   671/671
(100 %)
2 diff
(99.8 %id)
CF272720   .a 313 to 879 568 to 1     Submitted on the opposite strand 568/571
(99 %)
2 diff
(99.7 %id)
CN288029 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 108 to 615 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
CN413994 embryonic stem cells, cell lines H1, H7, andH9 .c 1 to 700 1 to 700 exact tiling clone,   700/700
(100 %)
0 diff
(100 %id)
CR743750 pooled .d 127 to 644 8 to 525   tiling clone,   518/525
(98 %)
6 diff
(98.9 %id)
BX501914 Liver .a 119 to 686 1 to 568       568/568
(100 %)
5 diff
(99.2 %id)
EH339402   .a 1605 to 1678 1 to 73       73/73
(100 %)
1 diff
(98.7 %id)
DA484684 brain .a 1934 to 2491 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA510599 brain .a 1456 to 2038 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
FN076186 breast carcinoma .b 3302 to 3407 1 to 107       107/109
(98 %)
2 diff
(98.2 %id)
FN090283 breast carcinoma .b 3367 to 3461 1 to 93       93/93
(100 %)
4 diff
(95.7 %id)
FN122634 breast carcinoma .a 428 to 543 117 to 1     Submitted on the opposite strand 117/117
(100 %)
3 diff
(97.5 %id)
FN162287 breast carcinoma .b 3656 to 3772 1 to 116       116/116
(100 %)
1 diff
(99.2 %id)
DB457036 testis .a 44 to 746 1 to 704       704/708
(99 %)
3 diff
(99.6 %id)
DB522475 testis .a 3222 to 3908 1 to 686   tiling clone, AAA Submitted on the opposite strand 686/686
(100 %)
6 diff
(99.2 %id)
BP240599 Liver .a 663 to 1231 1 to 569       569/571
(99 %)
5 diff
(99.2 %id)
N22590 cochlea, ear .b 3648 to 3857 210 to 1       210/210
(100 %)
0 diff
(100 %id)
AA194021 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2493 to 3013 520 to 1       520/529
(98 %)
11 diff
(98.0 %id)
AA194210 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1302 to 1815 1 to 537       537/623
(86 %)
25 diff
(96.0 %id)
AA398052   .b 3386 to 3812 1 to 426       426/426
(100 %)
2 diff
(99.6 %id)
AA443293   .a 3457 to 3909 455 to 3       453/455
(99 %)
0 diff
(100 %id)
AA443424   .a 2466 to 2995 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
AA612962 colon, colon tumor RER+ .a 3656 to 4071 416 to 1   tiling clone,   416/416
(100 %)
1 diff
(99.8 %id)
AA659374 metastatic prostate bone lesion .a 2080 to 2390 1 to 311       311/311
(100 %)
1 diff
(99.7 %id)
AA687317 germinal center B cell .b 3517 to 3856 358 to 19   AAA   340/340
(100 %)
1 diff
(99.8 %id)
AA761642 germinal center B cell .a 2875 to 3214 11 to 350   tiling clone, Submitted on the opposite strand 340/350
(97 %)
6 diff
(98.3 %id)
AI219532 pooled .d 650 to 1088 441 to 3   tiling clone,   439/441
(99 %)
0 diff
(100 %id)
AI670896 Kidney .b 3691 to 4164 482 to 9   tiling clone,   474/482
(98 %)
0 diff
(100 %id)
AI809797 pooled .b 3336 to 3856 534 to 12   AAA   523/523
(100 %)
4 diff
(99.3 %id)
AI769234 pooled .b 3774 to 3856 99 to 17   AAA   83/83
(100 %)
0 diff
(100 %id)
AW196610 pooled germ cell tumors .b 3521 to 3856 349 to 14   tiling clone, AAA   336/336
(100 %)
0 diff
(100 %id)
AW301198 Kidney .b 3380 to 3854 480 to 6       475/480
(98 %)
0 diff
(100 %id)
AW301218 Kidney .b 3343 to 3856 514 to 1   tiling clone,   514/514
(100 %)
3 diff
(99.5 %id)
CB051574 leiomyosarcoma, soft tissue .a 1921 to 2587 695 to 31   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 665/695
(95 %)
0 diff
(100 %id)
BQ008448 Chondrosarcoma, Left Pubic Bone .a 3209 to 3908 718 to 19   tiling clone, AAA   700/700
(100 %)
3 diff
(99.6 %id)
BQ213538 embryonal carcinoma, cell line, testis .a 3269 to 3792 23 to 548       526/1317
(39 %)
19 diff
(98.6 %id)
CX873569 embryonic stem .e 1 to 825 1 to 827 exact tiling clone,   827/827
(100 %)
1 diff
(99.9 %id)
CD653593 Embryonic Stem cells .a 137 to 881 54 to 798       745/856
(87 %)
9 diff
(99.0 %id)
CD644587 Embryonic Stem cells .a 102 to 881 53 to 830       778/864
(90 %)
12 diff
(98.7 %id)
BC131722 PCR rescued clones .b 1 to 3348 1 to 3348 M140I N668D tiling clone,   3348/3348
(100 %)
3 diff
(100.0 %id)
NM_024672.4   .a 34 to 4071 1 to 4038 exact RefSeq,   4038/4038
(100 %)
0 diff
(100 %id)
DA723893   .a 110 to 675 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA864674 placenta .a 73 to 560 2 to 492   capped   491/491
(100 %)
4 diff
(99.2 %id)
DA866505 Prostate .d 1 to 541 2 to 543   tiling clone, capped   542/542
(100 %)
1 diff
(99.9 %id)
DB062174 testis .a 101 to 597 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
DB062908 testis .d 283 to 820 2 to 540   tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
DB065648 testis .a 54 to 627 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DB069654 testis .a 57 to 587 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DB076793 testis .a 54 to 622 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB086279 testis .d 489 to 1052 2 to 566 L30P V31C E32R E33R K34E ... capped   565/565
(100 %)
1 diff
(99.9 %id)
DB087652 testis .a 475 to 1024 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
DB093127 testis .a 1 to 546 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
DB154392 thymus .a 526 to 1112 2 to 588   tiling clone, capped   587/587
(100 %)
2 diff
(99.7 %id)
TI_149313780   .a 889 to 1804 991 to 81   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 911/1076
(84 %)
0 diff
(100 %id)
DB228932 trachea .a 53 to 651 2 to 601   capped   600/600
(100 %)
2 diff
(99.7 %id)
DB236118 trachea .a 54 to 637 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
CB305628 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1075 to 1804 741 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 730/741
(98 %)
0 diff
(100 %id)
DB283090 uterus .a 73 to 612 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB292659 uterus .a 110 to 652 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
AK091412 brain .a 526 to 1112 2 to 588   tiling clone, available from FLJ, This clone was ignored 587/587
(100 %)
2 diff
(99.7 %id)
AX746965   .a 889 to 1804 991 to 81   tiling clone, This clone was ignored 911/1076
(84 %)
0 diff
(100 %id)
BF802603 colon_ins .a 53 to 651 2 to 601       600/600
(100 %)
2 diff
(99.7 %id)
BX648134 human testis .a 54 to 637 2 to 586   available from DKFZ, AAA This clone was ignored 585/585
(100 %)
1 diff
(99.9 %id)
DA494504 brain .a 1075 to 1804 741 to 12   capped This clone was ignored 730/741
(98 %)
0 diff
(100 %id)
DB315562 brain .a 1075 to 1804 741 to 12     This clone was ignored 730/741
(98 %)
0 diff
(100 %id)
DB070181 testis .a 73 to 612 2 to 541   capped This clone was ignored 540/540
(100 %)
0 diff
(100 %id)
DB292659 uterus .a 110 to 652 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C