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Gene TFDP2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
480 supporting clones for gene TFDP2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA293245 hippocampus .a -10 to 233 2 to 245   capped   244/244
(100 %)
0 diff
(100 %id)
DA493405 brain .a 1 to 541 4 to 546   capped   545/545
(100 %)
5 diff
(99.1 %id)
BM839540 Ascites, stomach .a 1 to 468 3 to 470       470/470
(100 %)
4 diff
(99.2 %id)
DB025733 testis .a 1 to 551 4 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB022842 testis .a 1 to 492 3 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
DB157176 thymus .a 1 to 535 3 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB037880 testis .a 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB045787 testis .a 1 to 545 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DB153278 thymus .a 1 to 574 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
CN289291 embryonic stem cells, DMSO-treated H9 cellline .a 11 to 369 1 to 359       359/359
(100 %)
6 diff
(98.4 %id)
DB479844 hippocampus .a 11 to 339 1 to 333       333/495
(67 %)
8 diff
(98.4 %id)
BG827562 muscle, rhabdomyosarcoma .a 12 to 527 1 to 534       532/719
(73 %)
36 diff
(95.0 %id)
DB115917 thymus .a 24 to 474 2 to 452   capped   451/451
(100 %)
0 diff
(100 %id)
BM888301 eye .a 29 to 521 1 to 501       501/671
(74 %)
21 diff
(96.9 %id)
DA712743   .a 29 to 278 2 to 251   capped   250/252
(99 %)
3 diff
(98.9 %id)
BU602615 mixed (pool of 40 RNAs) .a 30 to 521 1 to 492       492/702
(70 %)
9 diff
(98.8 %id)
BX421740 T cells (Jurkat cell line) .a 33 to 1022 1 to 984   AAA   984/990
(99 %)
15 diff
(98.5 %id)
BG427146 Kidney .a 35 to 347 1 to 314       314/763
(41 %)
5 diff
(99.4 %id)
DA317012 hippocampus .a 36 to 492 2 to 460   capped   459/459
(100 %)
2 diff
(99.6 %id)
CR597951 Neuroblastoma Cot 10-normalized .a 45 to 1781 1 to 1737 exact tiling clone,   1737/1737
(100 %)
0 diff
(100 %id)
AL520509 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 45 to 912 1 to 871   fully sequenced,   868/868
(100 %)
5 diff
(99.5 %id)
DB091408 testis .a 52 to 583 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DB119547 thymus .a 52 to 583 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DC384102 Prostate .a 53 to 647 1 to 595       595/596
(99 %)
2 diff
(99.7 %id)
AW517021 cervix .a 56 to 408 354 to 1       354/366
(96 %)
4 diff
(99.0 %id)
CD244076 testis .a 59 to 779 1 to 728       728/799
(91 %)
6 diff
(99.3 %id)
BX383860   .a 64 to 1005 1 to 945       945/945
(100 %)
10 diff
(99.0 %id)
AA286793 germinal center B cell .a 89 to 447 40 to 388       349/391
(89 %)
9 diff
(97.7 %id)
AK314786 thalamus .a 121 to 1771 1 to 1653 E203R I204N K205Q W206V I207D ...     1653/1653
(100 %)
6 diff
(99.7 %id)
DA410818 thalamus .a 122 to 781 2 to 662   capped   661/661
(100 %)
2 diff
(99.7 %id)
NM_001178139.1   .a 339 to 9849 363 to 9873 exact RefSeq, AAA   9873/9873
(100 %)
0 diff
(100 %id)
DB109502 thymus .a 339 to 458 359 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
CD107995 brain, Pituitary .a 347 to 1208 1 to 862       862/863
(99 %)
2 diff
(99.8 %id)
BP367966 thymus .a 351 to 934 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
BM930176 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 373 to 786 446 to 33     Submitted on the opposite strand 414/451
(91 %)
2 diff
(99.6 %id)
BM683666 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 393 to 786 19 to 412     Submitted on the opposite strand 394/517
(76 %)
0 diff
(100 %id)
DC340667 thalamus .a 431 to 991 1 to 561       561/561
(100 %)
0 diff
(100 %id)
BE902929 choriocarcinoma, placenta .a 510 to 1247 13 to 744   AAA   734/951
(77 %)
17 diff
(98.3 %id)
BG106081 lymph, lymphoma, cell line .a 510 to 1303 13 to 803       795/904
(87 %)
36 diff
(96.1 %id)
DN999255   .a 510 to 1115 37 to 643       611/644
(94 %)
8 diff
(98.8 %id)
AI565859 anaplastic oligodendroglioma, brain .a 512 to 786 285 to 11       275/285
(96 %)
4 diff
(98.6 %id)
BI826504 brain, medulla .a 512 to 1194 1 to 684       684/684
(100 %)
1 diff
(99.9 %id)
TI_57174111   .a 512 to 1194 33 to 716       684/716
(95 %)
6 diff
(99.2 %id)
AI362850 anaplastic oligodendroglioma, brain .a 513 to 796 284 to 1       286/286
(100 %)
0 diff
(100 %id)
AA312800 testis .a 514 to 1009 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
AA382819 testis .a 514 to 807 1 to 295       295/295
(100 %)
2 diff
(99.4 %id)
CX787155 human embryonic stem cells .a 523 to 1270 1 to 748       748/748
(100 %)
0 diff
(100 %id)
BE279764 choriocarcinoma, placenta .a 542 to 1160 1 to 618       618/618
(100 %)
3 diff
(99.6 %id)
CN420175 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 547 to 1183 1 to 637       637/637
(100 %)
0 diff
(100 %id)
L40386   .a 582 to 1787 1 to 1206   AAA   1206/1206
(100 %)
4 diff
(99.7 %id)
CF141067 CNCAP(3)T-225 cell line, Prostate .a 605 to 995 8 to 398       391/398
(98 %)
2 diff
(99.5 %id)
TI_154171718   .a 605 to 1104 67 to 570       504/999
(50 %)
22 diff
(97.8 %id)
AI240475 pooled .a 613 to 1029 415 to 1       415/624
(66 %)
9 diff
(98.6 %id)
BG203469   .a 614 to 1306 1 to 697       697/795
(87 %)
30 diff
(96.3 %id)
AA324312 brain, cerebellum .a 622 to 786 1 to 165       165/171
(96 %)
4 diff
(97.7 %id)
CR592926 thymus .a 640 to 1759 1 to 1120       1120/1120
(100 %)
0 diff
(100 %id)
BX414733 thymus .a 640 to 1193 1 to 554   fully sequenced,   554/554
(100 %)
3 diff
(99.5 %id)
DB104690 thymus .a 653 to 1211 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BE538140 cervix .a 672 to 1284 1 to 613       613/613
(100 %)
3 diff
(99.6 %id)
BQ336097 marrow .a 685 to 949 1 to 273       273/301
(90 %)
13 diff
(95.7 %id)
BQ375360 testis_normal .a 692 to 1121 430 to 4       427/435
(98 %)
7 diff
(98.4 %id)
AA229436   .a 707 to 824 118 to 1       118/118
(100 %)
4 diff
(96.7 %id)
DW423845 Liver .a 750 to 1021 16 to 287       272/290
(93 %)
7 diff
(97.6 %id)
DW429135 Liver .a 750 to 1007 16 to 273       258/273
(94 %)
6 diff
(97.9 %id)
BG205019   .a 794 to 1023 12 to 239   AAA   228/239
(95 %)
7 diff
(97.1 %id)
BP378918 uterus .a 809 to 1375 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
CN420171 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 817 to 1453 1 to 637       637/637
(100 %)
0 diff
(100 %id)
BG025151 lymph, lymphoma, cell line .a 829 to 1426 1 to 598       598/598
(100 %)
0 diff
(100 %id)
AL520508 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 882 to 1781 902 to 1   fully sequenced,   900/900
(100 %)
6 diff
(99.4 %id)
CB145789 Liver .a 893 to 1384 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
DA481590   .a 927 to 1485 2 to 560   capped   559/561
(99 %)
4 diff
(99.3 %id)
H78843 liver and spleen .a 952 to 1111 1 to 160       160/160
(100 %)
0 diff
(100 %id)
H78856 liver and spleen .a 952 to 1111 1 to 160       160/160
(100 %)
0 diff
(100 %id)
CR613689 neuroblastoma .a 973 to 2740 1 to 1768   tiling clone,   1768/1768
(100 %)
0 diff
(100 %id)
AL517165 brain, neuroblastoma, neuroblastoma cells .a 973 to 1869 1 to 893   fully sequenced,   893/893
(100 %)
1 diff
(99.9 %id)
BQ230373 epithelioid carcinoma, Pancreas .a 975 to 1794 1 to 821   AAA   821/821
(100 %)
11 diff
(98.7 %id)
DA149399 amygdala .a 977 to 1551 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP349661 brain .a 983 to 1564 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AI003765 Kidney .a 1007 to 1794 809 to 18   AAA   792/792
(100 %)
27 diff
(96.6 %id)
BM794120 Ascites, stomach .a 1036 to 1459 1 to 424       424/424
(100 %)
0 diff
(100 %id)
BU616981 Cell Line, Chondrosarcoma .a 1070 to 1784 715 to 1       715/715
(100 %)
0 diff
(100 %id)
CD366173 Alveolar Macrophage, lung .a 1070 to 1787 735 to 19   AAA   717/717
(100 %)
2 diff
(99.8 %id)
EC500521 Prostate .a 1109 to 1215 106 to 3       104/106
(98 %)
0 diff
(100 %id)
CN420176 embryonic stem cells, cell lines H1, H7, andH9 .a 1130 to 1853 1 to 726       726/726
(100 %)
2 diff
(99.8 %id)
BX414732 thymus .a 1132 to 1759 628 to 1   fully sequenced,   628/628
(100 %)
4 diff
(99.4 %id)
AW502716 lymph .a 1132 to 1607 18 to 493       476/493
(96 %)
6 diff
(98.8 %id)
AW502718 lymph .a 1132 to 1576 18 to 462       445/462
(96 %)
8 diff
(98.3 %id)
TI_154158312   .a 1132 to 1648 90 to 603       514/566
(90 %)
10 diff
(98.3 %id)
TI_154158358   .a 1132 to 1701 90 to 659       570/581
(98 %)
20 diff
(96.6 %id)
BG034328 breast, mammary adenocarcinoma, cell line .a 1143 to 1787 1 to 642   AAA   642/642
(100 %)
7 diff
(99.0 %id)
Z17843   .a 1147 to 1447 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
TI_1948086101   .a 1154 to 1770 761 to 134       626/1415
(44 %)
33 diff
(97.7 %id)
AA327757   .a 1157 to 1255 1 to 104       104/104
(100 %)
3 diff
(97.2 %id)
BX393186   .a 1161 to 1789 635 to 1       635/635
(100 %)
27 diff
(95.8 %id)
BG199984   .a 1163 to 1315 1 to 153       153/160
(95 %)
1 diff
(99.4 %id)
BG210900   .a 1166 to 1794 10 to 637   AAA   628/637
(98 %)
7 diff
(99.0 %id)
BQ774025 Bone, Human Chondrosarcoma Cell Line .a 1195 to 1794 618 to 19   AAA   600/600
(100 %)
0 diff
(100 %id)
FN129314 breast carcinoma .a 1205 to 1297 92 to 1     Submitted on the opposite strand 92/92
(100 %)
1 diff
(99.0 %id)
CB243703 Human Lung Epithelial cells, lung .a 1234 to 1787 572 to 19   AAA   554/554
(100 %)
5 diff
(99.1 %id)
AI497668 anaplastic oligodendroglioma, brain .a 1236 to 1787 552 to 1       552/553
(99 %)
6 diff
(99.0 %id)
AI566303 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1238 to 1788 553 to 4       550/553
(99 %)
10 diff
(98.2 %id)
BP431020   .a 1240 to 1606 1 to 367       367/367
(100 %)
3 diff
(99.2 %id)
AA091312   .a 1252 to 1515 1 to 263       263/265
(99 %)
7 diff
(97.4 %id)
AA155853   .a 1253 to 1786 530 to 1       530/530
(100 %)
8 diff
(98.5 %id)
DA438805 tongue, tumor tissue .a 1262 to 1848 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
W21383 lung .a 1274 to 1510 1 to 236       236/236
(100 %)
1 diff
(99.6 %id)
AW084168 esophagus, squamous cell carcinoma .a 1284 to 1787 505 to 1       505/506
(99 %)
7 diff
(98.7 %id)
AA621755   .a 1295 to 1788 497 to 6       492/497
(98 %)
2 diff
(99.6 %id)
DW410417 Liver .a 1296 to 1614 16 to 334       319/334
(95 %)
8 diff
(97.7 %id)
BM931318 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1297 to 1787 1 to 491   fully sequenced, AAA   491/491
(100 %)
0 diff
(100 %id)
AA356146   .a 1312 to 1592 1 to 281       281/281
(100 %)
0 diff
(100 %id)
AW958594   .a 1313 to 1794 1 to 482       482/497
(96 %)
5 diff
(99.0 %id)
CN420173 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1315 to 1964 1 to 650       650/650
(100 %)
0 diff
(100 %id)
DB525180 testis .a 1324 to 1786 1 to 469     Submitted on the opposite strand 469/469
(100 %)
8 diff
(98.3 %id)
BP369430 testis .a 1333 to 1890 1 to 560       560/562
(99 %)
4 diff
(99.3 %id)
BF155616 head_neck .a 1344 to 1533 1 to 190       190/190
(100 %)
4 diff
(97.9 %id)
AA701383 liver and spleen .a 1347 to 1802 456 to 1       456/456
(100 %)
0 diff
(100 %id)
FN117490 breast carcinoma .a 1358 to 1448 95 to 6     Submitted on the opposite strand 90/95
(94 %)
0 diff
(100 %id)
AI025776   .a 1358 to 1788 433 to 3       431/436
(98 %)
0 diff
(100 %id)
R10629 liver and spleen .a 1359 to 1727 1 to 378       378/381
(99 %)
12 diff
(96.9 %id)
AI056549 liver and spleen .a 1364 to 1802 439 to 1       439/439
(100 %)
0 diff
(100 %id)
DB514790 testis .a 1379 to 1794 1 to 416     Submitted on the opposite strand 416/416
(100 %)
1 diff
(99.8 %id)
FN103383 breast carcinoma .a 1383 to 1484 1 to 102       102/102
(100 %)
0 diff
(100 %id)
BP428604   .a 1426 to 1828 1 to 403       403/403
(100 %)
3 diff
(99.3 %id)
DB224157 trachea .a 1438 to 2022 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BM684884 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1451 to 1787 355 to 19   fully sequenced, AAA   337/337
(100 %)
0 diff
(100 %id)
AI560470 anaplastic oligodendroglioma, brain .a 1475 to 1788 322 to 8       315/344
(91 %)
18 diff
(94.8 %id)
AW135011   .a 1493 to 1787 312 to 18   AAA   295/305
(96 %)
0 diff
(100 %id)
BX108068 liver and spleen .a 1561 to 2318 1 to 757       757/757
(100 %)
2 diff
(99.8 %id)
T83041 liver and spleen .a 1561 to 1989 1 to 442       442/443
(99 %)
21 diff
(95.3 %id)
BM728849 eye, fetal eye .a 1598 to 1787 1 to 190   fully sequenced, AAA   190/190
(100 %)
5 diff
(97.4 %id)
BU742755 eye, fetal eye .a 1649 to 1787 157 to 19   fully sequenced, AAA   139/139
(100 %)
0 diff
(100 %id)
BI043980 ovary .a 1678 to 1843 1 to 164       164/179
(91 %)
6 diff
(96.7 %id)
BE700069 nervous_normal .a 1692 to 1975 287 to 1       287/287
(100 %)
6 diff
(98.0 %id)
BE816027 breast_normal .a 1692 to 1975 1 to 284       284/284
(100 %)
2 diff
(99.3 %id)
AW891242 nervous_tumor .a 1709 to 2081 8 to 386       379/386
(98 %)
6 diff
(98.5 %id)
AW891238 nervous_tumor .a 1719 to 2134 430 to 16       415/430
(96 %)
0 diff
(100 %id)
BE713304 head_neck .a 1755 to 2153 399 to 1       399/399
(100 %)
1 diff
(99.8 %id)
AW997456 breast_normal .a 1767 to 2210 1 to 441       441/448
(98 %)
10 diff
(97.8 %id)
T71496 liver and spleen .a 1779 to 2145 1 to 370       370/402
(92 %)
5 diff
(98.8 %id)
AW891262 nervous_tumor .a 1783 to 2163 1 to 372       372/378
(98 %)
16 diff
(95.8 %id)
BE713181 head_neck .a 1796 to 2153 358 to 1       358/358
(100 %)
0 diff
(100 %id)
BX361622   .a 1798 to 2696 901 to 1       901/985
(91 %)
38 diff
(96.2 %id)
BU933035 mixed (pool of 40 RNAs) .a 1813 to 2602 1 to 815       815/849
(95 %)
34 diff
(96.0 %id)
AV697425 hepatocellular carcinoma .a 1834 to 2476 1 to 636       636/646
(98 %)
6 diff
(99.1 %id)
AL517164 brain, neuroblastoma, neuroblastoma cells .a 1839 to 2713 909 to 28   fully sequenced,   882/909
(97 %)
12 diff
(98.7 %id)
AA465444 germinal center B cell .a 1871 to 2344 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
TI_159693800   .a 1938 to 2766 909 to 82   AAA   828/1019
(81 %)
77 diff
(92.5 %id)
AA779946 liver and spleen .a 1969 to 2378 448 to 38   AAA   411/411
(100 %)
5 diff
(98.8 %id)
CA311057 Human Lung Epithelial cells, lung .a 1988 to 2766 793 to 16   AAA   778/778
(100 %)
6 diff
(99.3 %id)
CA443942 Fibrosarcoma .a 1993 to 2769 782 to 16   AAA   767/771
(99 %)
11 diff
(98.6 %id)
BE708378 head_neck .a 1999 to 2243 1 to 249       249/249
(100 %)
11 diff
(95.6 %id)
W46920 senescent fibroblast .a 2015 to 2420 1 to 419   fully sequenced,   419/419
(100 %)
13 diff
(96.9 %id)
AA347397 heart .a 2094 to 2451 1 to 360       360/360
(100 %)
6 diff
(98.4 %id)
DB157199 thymus .a 2163 to 2740 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BQ021689 lung, Metastatic Chondrosarcoma .a 2193 to 2772 598 to 19   AAA   580/580
(100 %)
1 diff
(99.9 %id)
BQ006121 Chondrosarcoma, Left Pelvis .a 2195 to 2769 588 to 13   AAA   576/576
(100 %)
5 diff
(99.2 %id)
AI797480 pooled .a 2229 to 2768 542 to 3       540/542
(99 %)
0 diff
(100 %id)
N54408 liver and spleen .a 2259 to 2766 508 to 1       508/508
(100 %)
0 diff
(100 %id)
AI804234 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2266 to 2735 482 to 14   AAA   469/469
(100 %)
2 diff
(99.6 %id)
BP429547   .a 2281 to 2624 1 to 344       344/344
(100 %)
1 diff
(99.8 %id)
DB548578 hippocampus .a 2310 to 2766 1 to 457     Submitted on the opposite strand 457/457
(100 %)
1 diff
(99.8 %id)
AW593650 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2338 to 2772 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
AI217927   .a 2344 to 2769 444 to 19   AAA   426/426
(100 %)
0 diff
(100 %id)
BX282567 brain, hippocampus .a 2350 to 2766 445 to 29   AAA Submitted on the opposite strand 417/417
(100 %)
1 diff
(99.8 %id)
AA968632 pooled .a 2373 to 2766 409 to 13   AAA   397/397
(100 %)
3 diff
(99.3 %id)
W46792 senescent fibroblast .a 2390 to 2778 390 to 1   fully sequenced,   390/390
(100 %)
1 diff
(99.8 %id)
AA814316 germinal center B cell .a 2391 to 2769 389 to 11   AAA   379/379
(100 %)
0 diff
(100 %id)
AI564086 Kidney .a 2394 to 2779 386 to 1       386/386
(100 %)
1 diff
(99.8 %id)
BG534183 lung .a 2397 to 3133 1 to 729   tiling clone,   729/732
(99 %)
22 diff
(97.0 %id)
AA465369 germinal center B cell .a 2411 to 2766 368 to 13   AAA   356/356
(100 %)
1 diff
(99.8 %id)
AA879272 metastatic prostate bone lesion .a 2469 to 2768 8 to 307       300/308
(97 %)
3 diff
(99.1 %id)
AA687302 germinal center B cell .a 2486 to 2769 294 to 11   AAA   284/284
(100 %)
0 diff
(100 %id)
AI472638 follicular lymphoma, lymph node .a 2487 to 2768 282 to 1       282/282
(100 %)
0 diff
(100 %id)
AA447792 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2489 to 2769 281 to 1       281/281
(100 %)
0 diff
(100 %id)
R02043 liver and spleen .a 2520 to 2769 252 to 1       252/256
(98 %)
2 diff
(99.3 %id)
AW235972 Kidney .a 2532 to 2766 237 to 1       237/237
(100 %)
2 diff
(99.2 %id)
N93047 lung .a 2550 to 2772 267 to 43   AAA   225/225
(100 %)
2 diff
(99.2 %id)
R10630 liver and spleen .a 2556 to 2762 207 to 1       207/209
(99 %)
2 diff
(99.1 %id)
BE709138 head_neck .a 2690 to 3038 359 to 8   tiling clone,   352/374
(94 %)
0 diff
(100 %id)
C00546   .a 2691 to 2779 1 to 89       89/89
(100 %)
1 diff
(98.9 %id)
DA572708 whole embryo, mainly body .a 3104 to 3923 2 to 822   tiling clone, fully sequenced, capped   821/821
(100 %)
7 diff
(99.2 %id)
EH342896   .a 3306 to 3378 1 to 74       74/74
(100 %)
1 diff
(98.7 %id)
BE645615 Prostate .a 3362 to 3836 475 to 1       475/475
(100 %)
3 diff
(99.4 %id)
BE078292 breast .a 3586 to 4102 33 to 548       516/548
(94 %)
3 diff
(99.5 %id)
AW404856 lymph .a 3736 to 4266 8 to 538   tiling clone,   531/538
(98 %)
6 diff
(98.9 %id)
TI_154141925   .a 3736 to 4451 80 to 793       714/720
(99 %)
23 diff
(96.9 %id)
TI_154136519   .a 3763 to 4456 743 to 63   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 681/1062
(64 %)
38 diff
(96.5 %id)
BE078289 breast .a 3785 to 4112 334 to 6     Submitted on the opposite strand 329/334
(98 %)
0 diff
(100 %id)
TI_154136470   .a 3855 to 4456 673 to 66   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 608/1061
(57 %)
19 diff
(98.3 %id)
DB359781 whole embryo, mainly body .a 3893 to 4456 561 to 1   fully sequenced,   561/561
(100 %)
12 diff
(97.9 %id)
AI049624   .a 3953 to 4460 509 to 2   tiling clone,   508/509
(99 %)
0 diff
(100 %id)
AA814705 brain, substantia nigra .a 3998 to 4456 459 to 1   tiling clone,   459/459
(100 %)
1 diff
(99.8 %id)
AA347396 heart .a 4142 to 4456 315 to 1   tiling clone,   315/315
(100 %)
1 diff
(99.7 %id)
AI916652 colon, colon tumor, RER+ .a 4659 to 5121 463 to 1   tiling clone,   463/463
(100 %)
0 diff
(100 %id)
DB283858 uterus .a 4992 to 5473 2 to 477   tiling clone, capped   476/476
(100 %)
3 diff
(99.4 %id)
CN268438 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5455 to 5909 1 to 454   tiling clone,   454/454
(100 %)
3 diff
(99.4 %id)
BG006860 placenta_normal .a 5841 to 6248 414 to 7   tiling clone,   408/426
(95 %)
0 diff
(100 %id)
BG961598 colon .a 5968 to 6343 9 to 384       376/392
(95 %)
6 diff
(98.5 %id)
BF746668 breast .a 6019 to 6242 10 to 228       219/228
(96 %)
6 diff
(97.4 %id)
BI023994 marrow .a 6113 to 6338 1 to 225       225/225
(100 %)
7 diff
(96.9 %id)
DB133997 thymus .a 6142 to 6681 2 to 541   tiling clone, capped   540/540
(100 %)
0 diff
(100 %id)
AV746802 Pituitary .a 6170 to 6516 1 to 341       341/347
(98 %)
12 diff
(96.6 %id)
CN417698 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6407 to 6850 1 to 444   tiling clone,   444/444
(100 %)
4 diff
(99.1 %id)
AL037329 brain .a 6411 to 6670 269 to 11       259/269
(96 %)
0 diff
(100 %id)
AA621475   .a 6563 to 6856 298 to 5   tiling clone,   294/298
(98 %)
0 diff
(100 %id)
AI919482 anaplastic oligodendroglioma, brain .a 6573 to 6859 287 to 1       287/287
(100 %)
13 diff
(95.5 %id)
CN417699 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6595 to 6787 1 to 193       193/193
(100 %)
4 diff
(98.0 %id)
BM464287 leiomyosarcoma, uterus .a 6641 to 7283 1 to 643   tiling clone,   643/1141
(56 %)
10 diff
(99.2 %id)
BF844958 head_neck .a 6749 to 7048 335 to 35   tiling clone, Submitted on the opposite strand 301/335
(89 %)
0 diff
(100 %id)
AW044420 pooled .a 6836 to 7267 448 to 17       432/448
(96 %)
0 diff
(100 %id)
DB135683 thymus .a 6859 to 7309 2 to 453   capped   452/452
(100 %)
1 diff
(99.8 %id)
AK096450 tongue .a 6893 to 9138 1 to 2245   tiling clone, available from FLJ,   2245/2245
(100 %)
6 diff
(99.8 %id)
DA766812 tongue .a 6894 to 7464 2 to 572   capped   571/572
(99 %)
2 diff
(99.7 %id)
BU596890 mixed (pool of 40 RNAs) .a 6949 to 7629 1 to 689   tiling clone,   689/795
(86 %)
14 diff
(98.3 %id)
CB270164 adipose .a 7222 to 7741 519 to 3     Submitted on the opposite strand 517/523
(98 %)
0 diff
(100 %id)
AW851100 colon .a 7390 to 7973 1 to 584       584/585
(99 %)
3 diff
(99.5 %id)
BI058640 placenta_normal .a 7414 to 7616 208 to 5       204/209
(97 %)
0 diff
(100 %id)
BI088683 cervix .a 7428 to 8075 1 to 652       652/652
(100 %)
10 diff
(98.5 %id)
CB270054 adipose .a 7429 to 7741 315 to 3     Submitted on the opposite strand 313/315
(99 %)
0 diff
(100 %id)
BM720239 eye, fetal eye .a 7441 to 7885 1 to 444   tiling clone,   444/444
(100 %)
3 diff
(99.4 %id)
BG988014 head_neck .a 7447 to 7981 16 to 556       541/556
(97 %)
6 diff
(99.0 %id)
DA728479   .a 7453 to 8229 2 to 782   capped   781/867
(90 %)
11 diff
(98.8 %id)
AW850833 colon .a 7479 to 8023 550 to 6       545/551
(98 %)
0 diff
(100 %id)
DA208322 brain .a 7538 to 8087 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB105254 thymus .a 7540 to 8084 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
AW850818 colon .a 7555 to 8022 482 to 12       471/483
(97 %)
0 diff
(100 %id)
BG703361 brain, hippocampus .a 7561 to 8225 1 to 675   available from MGC,   675/675
(100 %)
20 diff
(97.1 %id)
BC040991 Brain, hippocampus .a 7566 to 9849 1 to 2283   tiling clone, available from MGC, AAA   2283/2283
(100 %)
15 diff
(99.4 %id)
CV362608 ovary .a 7669 to 8091 17 to 438       422/438
(96 %)
6 diff
(98.7 %id)
BF802227 colon_ins .a 7740 to 8020 281 to 2     Submitted on the opposite strand 280/282
(99 %)
0 diff
(100 %id)
DA746606   .a 7815 to 8379 2 to 566   tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
CB128056 Liver .a 7828 to 8541 1 to 715       715/715
(100 %)
2 diff
(99.8 %id)
DB119365 thymus .a 7906 to 8478 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BG339523 leiomyosarcoma cell line, uterus .a 7979 to 8824 1 to 833       833/853
(97 %)
23 diff
(97.4 %id)
CV362566 ovary .a 8077 to 8329 274 to 12     Submitted on the opposite strand 263/277
(94 %)
0 diff
(100 %id)
BP420041 small intestine .a 8246 to 8775 1 to 530     Submitted on the opposite strand 530/530
(100 %)
0 diff
(100 %id)
BG000719 placenta_normal .a 8524 to 8660 140 to 4       137/140
(97 %)
0 diff
(100 %id)
BF913518 uterus_tumor .a 8535 to 8780 245 to 1     Submitted on the opposite strand 245/261
(93 %)
6 diff
(97.8 %id)
DB325495 tongue .a 8560 to 9138 578 to 1       578/578
(100 %)
3 diff
(99.5 %id)
BQ669148 epidermoid carcinoma, cell line, salivary gland .a 8840 to 9623 1 to 789       789/846
(93 %)
25 diff
(97.1 %id)
BQ880175 epidermoid carcinoma, cell line, salivary gland .a 8840 to 9650 1 to 816       816/885
(92 %)
22 diff
(97.6 %id)
BQ672842 epidermoid carcinoma, cell line, salivary gland .a 8840 to 9625 1 to 789       789/959
(82 %)
29 diff
(97.0 %id)
BQ671300 epidermoid carcinoma, cell line, salivary gland .a 8840 to 9753 1 to 924       924/924
(100 %)
51 diff
(94.5 %id)
BQ671525 epidermoid carcinoma, cell line, salivary gland .a 8849 to 9769 1 to 932       932/934
(99 %)
39 diff
(95.9 %id)
BG617052 Liver .a 8997 to 9663 1 to 672       672/673
(99 %)
31 diff
(95.4 %id)
CN415455 embryonic stem cells, DMSO-treated H9 cellline .a 9003 to 9631 1 to 629   tiling clone,   629/629
(100 %)
4 diff
(99.4 %id)
CN415456 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 9084 to 9600 1 to 516       516/516
(100 %)
3 diff
(99.5 %id)
W24551 lung .a 9137 to 9484 1 to 351   fully sequenced,   351/351
(100 %)
9 diff
(97.5 %id)
BM671991 eye, fetal eye .a 9139 to 9854 726 to 14   AAA   713/713
(100 %)
5 diff
(99.3 %id)
AA302679 adipose tissue, white .a 9164 to 9491 1 to 328       328/328
(100 %)
3 diff
(99.1 %id)
DB342824 thymus .a 9176 to 9757 583 to 1       583/583
(100 %)
3 diff
(99.5 %id)
AI569747 anaplastic oligodendroglioma, brain .a 9196 to 9758 564 to 2       563/564
(99 %)
0 diff
(100 %id)
W24513 lung .a 9209 to 9432 1 to 224       224/224
(100 %)
1 diff
(99.6 %id)
CD364587 Alveolar Macrophage, lung .a 9212 to 9854 656 to 14   AAA   643/643
(100 %)
2 diff
(99.7 %id)
AJ707766 heart .a 9228 to 9546 1 to 318       318/318
(100 %)
3 diff
(99.1 %id)
H51924 breast .a 9238 to 9532 1 to 303   fully sequenced,   303/303
(100 %)
1 diff
(99.7 %id)
CB218151.
matches multiple genes
mandible, pooled .a 9261 to 9765 537 to 33     also hits gene bleerobo 505/609
(82 %)
0 diff
(100 %id)
AA400362   .a 9283 to 9595 1 to 312   fully sequenced,   312/312
(100 %)
4 diff
(98.8 %id)
BX435963 T cells (Jurkat cell line) .a 9289 to 9822 579 to 44       536/699
(76 %)
0 diff
(100 %id)
DB344833 thymus .a 9300 to 9854 557 to 1       557/557
(100 %)
5 diff
(99.2 %id)
R73458 breast .a 9302 to 9526 1 to 229   fully sequenced,   229/229
(100 %)
3 diff
(98.7 %id)
H45332 breast .a 9303 to 9623 1 to 326   fully sequenced,   326/326
(100 %)
2 diff
(99.4 %id)
H45122 breast .a 9303 to 9513 1 to 229   fully sequenced,   229/229
(100 %)
2 diff
(99.2 %id)
R01289 liver and spleen .a 9304 to 9579 1 to 287   fully sequenced,   287/287
(100 %)
6 diff
(98.0 %id)
AI949603 anaplastic oligodendroglioma, brain .a 9314 to 9854 552 to 12   AAA   541/541
(100 %)
3 diff
(99.5 %id)
AW339333 carcinoid, lung .a 9315 to 9856 543 to 2       542/543
(99 %)
0 diff
(100 %id)
FN127768 breast carcinoma .a 9316 to 9381 1 to 66       66/67
(98 %)
2 diff
(97.1 %id)
BE044500 pooled .a 9316 to 9854 539 to 1       539/539
(100 %)
3 diff
(99.5 %id)
AI804892 Prostate .a 9317 to 9764 451 to 4       448/451
(99 %)
10 diff
(97.8 %id)
AI857312 anaplastic oligodendroglioma, brain .a 9342 to 9757 416 to 1       416/417
(99 %)
2 diff
(99.6 %id)
AI948440 anaplastic oligodendroglioma, brain .a 9342 to 9762 421 to 1       421/421
(100 %)
2 diff
(99.6 %id)
AI936776 anaplastic oligodendroglioma, brain .a 9344 to 9869 526 to 1   tiling clone,   526/526
(100 %)
2 diff
(99.7 %id)
BF444922 carcinoid, lung .a 9345 to 9856 514 to 2       513/514
(99 %)
0 diff
(100 %id)
BQ448692 Knee, Osteoarthritic Cartilage .a 9346 to 9843 505 to 8       498/505
(98 %)
0 diff
(100 %id)
AI569861 Kidney .a 9347 to 9856 512 to 3       510/512
(99 %)
0 diff
(100 %id)
AW591161 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 9347 to 9757 410 to 1       410/410
(100 %)
3 diff
(99.3 %id)
AI565736 anaplastic oligodendroglioma, brain .a 9358 to 9856 499 to 1       499/499
(100 %)
2 diff
(99.6 %id)
AA524378 colon .a 9360 to 9855 496 to 1       496/496
(100 %)
2 diff
(99.6 %id)
AI193161 lung .a 9366 to 9762 409 to 14   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 396/396
(100 %)
5 diff
(98.8 %id)
AI433718 Kidney .a 9375 to 9844 480 to 11       470/482
(97 %)
0 diff
(100 %id)
BF434260 Kidney .a 9375 to 9856 487 to 5       483/489
(98 %)
0 diff
(100 %id)
AA928109 pooled .a 9378 to 9855 480 to 4       477/480
(99 %)
0 diff
(100 %id)
AA936433 pooled .a 9384 to 9854 471 to 1       471/471
(100 %)
4 diff
(99.2 %id)
AI808131 pooled .a 9386 to 9854 484 to 16   AAA   469/469
(100 %)
7 diff
(98.6 %id)
AI814606 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 9387 to 9853 468 to 1       468/468
(100 %)
3 diff
(99.4 %id)
AI460156 colon .a 9394 to 9856 470 to 8       463/470
(98 %)
0 diff
(100 %id)
AI566140 Kidney .a 9395 to 9762 368 to 1       368/368
(100 %)
1 diff
(99.8 %id)
AI769436 2 pooled tumors (clear cell type), Kidney .a 9395 to 9856 464 to 2       463/464
(99 %)
0 diff
(100 %id)
AI912468 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9397 to 9856 460 to 1       460/460
(100 %)
1 diff
(99.8 %id)
AW665867 pooled .a 9399 to 9856 463 to 6       458/463
(98 %)
0 diff
(100 %id)
AI827392 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 9415 to 9856 443 to 2       442/443
(99 %)
0 diff
(100 %id)
AI954011 normal epithelium, ovary .a 9416 to 9856 442 to 2       441/442
(99 %)
0 diff
(100 %id)
AI810078 pooled .a 9419 to 9854 447 to 12   AAA   436/436
(100 %)
5 diff
(98.9 %id)
AA302680 adipose tissue, white .a 9423 to 9849 428 to 1       428/430
(99 %)
4 diff
(99.1 %id)
AI934934 2 pooled tumors (clear cell type), Kidney .a 9425 to 9854 456 to 27   AAA   430/437
(98 %)
8 diff
(98.2 %id)
AW468807 pooled .a 9433 to 9856 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AI369739 anaplastic oligodendroglioma, brain .a 9437 to 9854 418 to 1       418/418
(100 %)
1 diff
(99.8 %id)
AW661851 pooled .a 9438 to 9854 427 to 13   AAA   415/415
(100 %)
3 diff
(99.3 %id)
AW235966 Kidney .a 9439 to 9763 325 to 1       325/328
(99 %)
4 diff
(98.8 %id)
AI201931 anaplastic oligodendroglioma, brain .a 9444 to 9856 416 to 4       413/416
(99 %)
0 diff
(100 %id)
AI203680   .a 9445 to 9854 410 to 1       410/410
(100 %)
7 diff
(98.3 %id)
AI391669 anaplastic oligodendroglioma, brain .a 9445 to 9854 410 to 1       410/410
(100 %)
0 diff
(100 %id)
AA024607 heart .a 9447 to 9693 1 to 247   fully sequenced,   247/247
(100 %)
3 diff
(98.8 %id)
W99402 heart .a 9448 to 9850 15 to 417   fully sequenced,   403/417
(96 %)
6 diff
(98.6 %id)
AA720019 pineal gland .a 9453 to 9854 401 to 1       401/401
(100 %)
5 diff
(98.8 %id)
N95276 lung .a 9454 to 9862 406 to 1   fully sequenced,   406/406
(100 %)
11 diff
(97.3 %id)
AA902596 Kidney .a 9454 to 9853 398 to 1       398/398
(100 %)
5 diff
(98.8 %id)
BF445504 Prostate .a 9457 to 9854 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AA775522 heart .a 9467 to 9854 387 to 1       387/387
(100 %)
1 diff
(99.8 %id)
AW118160 pooled .a 9469 to 9855 386 to 1       386/386
(100 %)
3 diff
(99.3 %id)
H45426 breast .a 9483 to 9830 360 to 1   fully sequenced,   360/360
(100 %)
15 diff
(95.9 %id)
AA779115 liver and spleen .a 9483 to 9849 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AA902680 ovary, serous adenocarcinoma .a 9487 to 9850 365 to 1       365/365
(100 %)
3 diff
(99.2 %id)
BF509392   .a 9490 to 9854 375 to 13   AAA   363/371
(97 %)
12 diff
(96.8 %id)
W99313 heart .a 9494 to 9854 362 to 1   fully sequenced,   362/362
(100 %)
3 diff
(99.2 %id)
R73459 breast .a 9496 to 9828 340 to 1   fully sequenced,   340/340
(100 %)
7 diff
(98.0 %id)
AW086135 ovary, papillary serous carcinoma .a 9499 to 9854 369 to 14   AAA   356/356
(100 %)
2 diff
(99.5 %id)
BF477405 brain, glioblastoma (pooled) .a 9500 to 9849 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
H51323 breast .a 9502 to 9752 254 to 1   fully sequenced,   254/254
(100 %)
6 diff
(97.7 %id)
AI537576 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 9504 to 9854 351 to 1       351/351
(100 %)
3 diff
(99.2 %id)
AI245112 Kidney .a 9506 to 9856 352 to 1       352/353
(99 %)
1 diff
(99.8 %id)
R10129 liver and spleen .a 9511 to 9829 323 to 1       323/323
(100 %)
8 diff
(97.6 %id)
AW051133 brain, glioblastoma (pooled) .a 9520 to 9849 331 to 1       331/331
(100 %)
1 diff
(99.7 %id)
AI051627 brain, glioblastoma (pooled) .a 9523 to 9856 341 to 8       334/341
(97 %)
0 diff
(100 %id)
AI423335 brain, glioblastoma (pooled) .a 9523 to 9850 328 to 1       328/328
(100 %)
1 diff
(99.7 %id)
BE857451 brain, glioblastoma (pooled) .a 9523 to 9849 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AI361236 brain, glioblastoma (pooled) .a 9524 to 9854 345 to 15   AAA   331/331
(100 %)
4 diff
(98.8 %id)
CB050721 Prostate .a 9531 to 9762 256 to 25   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 232/235
(98 %)
4 diff
(98.3 %id)
BF431335 Kidney .a 9533 to 9856 331 to 8       324/331
(97 %)
0 diff
(100 %id)
AI056332 brain, glioblastoma (pooled) .a 9536 to 9855 320 to 1       320/320
(100 %)
13 diff
(96.0 %id)
AI969071 pooled germ cell tumors .a 9543 to 9855 313 to 1       313/313
(100 %)
2 diff
(99.4 %id)
R01177 liver and spleen .a 9549 to 9845 299 to 1   fully sequenced,   299/299
(100 %)
4 diff
(98.7 %id)
AA884669 pooled .a 9554 to 9856 304 to 2       303/304
(99 %)
0 diff
(100 %id)
BE858138 brain, glioblastoma (pooled) .a 9560 to 9849 290 to 1       290/290
(100 %)
3 diff
(99.0 %id)
BF476478 Prostate .a 9561 to 9854 294 to 1       294/294
(100 %)
0 diff
(100 %id)
AA400200   .a 9565 to 9872 308 to 1   fully sequenced,   308/308
(100 %)
5 diff
(98.4 %id)
AW169844 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 9575 to 9855 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AI927808 Kidney .a 9580 to 9854 288 to 14   AAA   275/275
(100 %)
9 diff
(96.8 %id)
H45264 breast .a 9593 to 9845 273 to 15   fully sequenced,   259/273
(94 %)
3 diff
(99.0 %id)
C00041   .a 9617 to 9853 1 to 237       237/239
(99 %)
2 diff
(99.2 %id)
AW014923   .a 9627 to 9851 246 to 22   AAA   225/230
(97 %)
9 diff
(96.1 %id)
N92332 lung .a 9632 to 9855 224 to 1       224/224
(100 %)
0 diff
(100 %id)
AW418796 2 pooled tumors (clear cell type), Kidney .a 9651 to 9762 112 to 1       112/112
(100 %)
1 diff
(99.2 %id)
AA024608 heart .a 9663 to 9854 192 to 1   fully sequenced,   192/192
(100 %)
0 diff
(100 %id)
AA885351 pooled .a 9704 to 9856 153 to 2       152/153
(99 %)
0 diff
(100 %id)
BM739648 stomach .a 9728 to 9854 1 to 127   AAA   127/127
(100 %)
0 diff
(100 %id)
AW673504 cervix .b 1 to 594 1 to 594   tiling clone,   594/594
(100 %)
8 diff
(98.7 %id)
NM_001178140.1   .b 1 to 9369 1 to 9369 exact RefSeq, AAA   9369/9369
(100 %)
0 diff
(100 %id)
DA849779 placenta .b 18 to 580 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
AL080206 testis .b 41 to 1308 1 to 1268   tiling clone, available from DKFZ,   1268/1276
(99 %)
1 diff
(100.0 %id)
AW675827 cervix .b 768 to 1308 541 to 1       541/541
(100 %)
0 diff
(100 %id)
NM_006286.4   .c 1 to 9427 1 to 9427 exact RefSeq, AAA   9427/9427
(100 %)
0 diff
(100 %id)
CD693314 normal nasopharynx .c 40 to 427 24 to 412       389/412
(94 %)
8 diff
(98.1 %id)
DB459739 testis .c 40 to 486 1 to 447       447/447
(100 %)
3 diff
(99.4 %id)
BF211504 bone marrow, from chronic myelogenous leukemia .c 40 to 583 1 to 550       550/777
(70 %)
19 diff
(97.6 %id)
DC372889   .c 42 to 480 1 to 439       439/439
(100 %)
0 diff
(100 %id)
DC397750 testis .c 42 to 625 1 to 584   tiling clone,   584/584
(100 %)
1 diff
(99.9 %id)
DC405758 thymus .c 42 to 625 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BF684630 leiomyosarcoma cell line, uterus .c 49 to 612 1 to 563   available from MGC, AAA   563/569
(98 %)
8 diff
(98.6 %id)
BC007976 Uterus, leiomyosarcoma .c 50 to 606 1 to 556   available from MGC, AAA   556/556
(100 %)
1 diff
(99.9 %id)
BQ880655 brain, neuroblastoma, cell line .c 50 to 978 21 to 954       934/973
(95 %)
26 diff
(97.4 %id)
DA679588   .c 57 to 600 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
AL547857 placenta, Placenta Cot 25-normalized .c 58 to 1035 1 to 978       978/990
(98 %)
5 diff
(99.5 %id)
BX342444   .c 58 to 313 1 to 257       257/306
(83 %)
7 diff
(97.8 %id)
U18422 Kidney .c 58 to 2360 10 to 2314 exact tiling clone,   2305/2320
(99 %)
14 diff
(99.4 %id)
DA578700   .c 62 to 624 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB126898 thymus .c 62 to 600 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
ES313263 beard hair, skin .c 68 to 655 1 to 593       593/593
(100 %)
5 diff
(99.2 %id)
DB112371 thymus .c 72 to 628 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
AW409954 muscle, rhabdomyosarcoma .c 73 to 628 24 to 579       556/579
(96 %)
0 diff
(100 %id)
BC002405 Muscle, rhabdomyosarcoma .c 73 to 1366 9 to 1302 exact AAA   1294/3600
(35 %)
1 diff
(100.0 %id)
AL572648 placenta, Placenta Cot 25-normalized .c 1408 to 2276 868 to 1   tiling clone,   868/972
(89 %)
7 diff
(99.3 %id)
DB126364 thymus .d -10 to 551 2 to 563   tiling clone, capped   562/571
(98 %)
2 diff
(99.7 %id)
DA141083 alzheimer cortex .d 1 to 570 3 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BI551656 brain, hippocampus .d 3 to 643 1 to 650       650/650
(100 %)
28 diff
(95.7 %id)
DB156920 thymus .d 3 to 523 11 to 535   capped   525/525
(100 %)
4 diff
(99.3 %id)
BC013993 Placenta, choriocarcinoma .d 61 to 1840 1 to 1780 exact tiling clone, available from MGC, AAA   1780/1780
(100 %)
0 diff
(100 %id)
BE312514 brain, neuroblastoma .d 63 to 649 1 to 590       590/609
(96 %)
10 diff
(98.4 %id)
BE407109 choriocarcinoma, placenta .d 80 to 823 1 to 742   available from MGC,   742/896
(82 %)
8 diff
(99.2 %id)
DT220402 brain .d 123 to 771 1 to 649       649/649
(100 %)
0 diff
(100 %id)
AW294706   .d 255 to 848 592 to 1       592/592
(100 %)
1 diff
(99.9 %id)
NM_001178138.1   .d 339 to 9887 363 to 9911 exact RefSeq, AAA   9911/9911
(100 %)
0 diff
(100 %id)
AA287636.
matches multiple genes
germinal center B cell .d 434 to 831 398 to 1     also hits gene KIAA0196 398/398
(100 %)
0 diff
(100 %id)
AW136370   .d 456 to 821 393 to 28       366/393
(93 %)
5 diff
(98.8 %id)
BF102863 adenocarcinoma, Prostate .d 542 to 1176 1 to 633       635/878
(72 %)
22 diff
(97.5 %id)
CD049714 embryonic stem cells, WA01, passage 38 .d 545 to 1393 38 to 887       850/887
(95 %)
15 diff
(98.4 %id)
BF239561 bone marrow, from chronic myelogenous leukemia .d 545 to 1128 47 to 626       584/775
(75 %)
44 diff
(94.4 %id)
BM560485 brain, medulla .d 545 to 1526 30 to 1024       994/1098
(90 %)
30 diff
(97.3 %id)
BF795529 lymph, lymphoma, cell line .d 548 to 1323 5 to 789       789/1185
(66 %)
25 diff
(97.9 %id)
BG480121 choriocarcinoma, placenta .d 556 to 1423 1 to 865       865/866
(99 %)
22 diff
(97.5 %id)
BC021113 Placenta, choriocarcinoma .d 557 to 1835 1 to 1279 exact available from MGC, AAA   1279/1279
(100 %)
0 diff
(100 %id)
BX366637 Placenta Cot 25-normalized .d 558 to 1495 1 to 934       932/946
(98 %)
10 diff
(99.0 %id)
CV029161 mixed .d 649 to 1294 1 to 645       645/648
(99 %)
2 diff
(99.7 %id)
TI_1948085636   .d 651 to 1295 131 to 779   fully sequenced,   650/754
(86 %)
15 diff
(98.1 %id)
TI_1948085942   .d 651 to 1242 129 to 723   fully sequenced,   596/724
(82 %)
7 diff
(99.1 %id)
TI_1948085787   .d 657 to 1265 141 to 754   fully sequenced,   613/709
(86 %)
30 diff
(95.8 %id)
BI031987 marrow .d 711 to 1180 12 to 481       470/481
(97 %)
8 diff
(98.4 %id)
BQ335315 marrow .d 715 to 1227 13 to 524       457/547
(83 %)
15 diff
(97.3 %id)
DC407316 thymus .d 716 to 1295 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
CN420174 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 756 to 1385 1 to 630       630/630
(100 %)
1 diff
(99.9 %id)
CU448143 epidermis .d 757 to 1204 464 to 16     Submitted on the opposite strand 449/481
(93 %)
6 diff
(98.8 %id)
BE162216 head_neck .d 772 to 1063 1 to 292       292/292
(100 %)
0 diff
(100 %id)
BP289394 lung .d 781 to 1362 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM838198 Ascites, stomach .d 896 to 1491 1 to 596       596/598
(99 %)
1 diff
(99.9 %id)
W40556 Pancreas, pancreatic islet .d 957 to 1373 1 to 418       418/418
(100 %)
6 diff
(98.6 %id)
TI_1948085943   .d 1212 to 1808 719 to 122   fully sequenced,   598/719
(83 %)
8 diff
(98.9 %id)
TI_1948085788   .d 1235 to 1808 693 to 112   fully sequenced,   582/693
(83 %)
21 diff
(97.0 %id)
TI_1948085637   .d 1265 to 1808 654 to 109   fully sequenced,   546/654
(83 %)
5 diff
(99.3 %id)
W42772 Pancreas, pancreatic islet .d 1385 to 1826 455 to 6       450/455
(98 %)
11 diff
(97.6 %id)
BX345659 Placenta Cot 25-normalized .d 1832 to 2802 973 to 1   tiling clone,   973/973
(100 %)
15 diff
(98.5 %id)
BP283421 bone marrow .e 1 to 582 1 to 581   tiling clone,   581/581
(100 %)
1 diff
(99.9 %id)
BM456446 lymph, lymphoma, cell line .e 2 to 829 1 to 833       833/878
(94 %)
14 diff
(98.5 %id)
BM456393 lymph, lymphoma, cell line .e 4 to 878 1 to 882   tiling clone,   882/882
(100 %)
7 diff
(99.3 %id)
BI092941 cervix .e 58 to 633 1 to 580       580/874
(66 %)
8 diff
(99.1 %id)
AI380472 B-cell, chronic lymphotic leukemia .e 542 to 1075 535 to 1   tiling clone,   535/535
(100 %)
4 diff
(99.3 %id)
NM_001178141.1   .f 1 to 9302 1 to 9302 exact RefSeq, AAA   9302/9302
(100 %)
0 diff
(100 %id)
AK303634 thymus .f 59 to 1461 1 to 1403 exact tiling clone,   1403/1403
(100 %)
0 diff
(100 %id)
DC410861 thymus .f 59 to 631 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC371485   .f 61 to 625 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BG187653   .f 84 to 882 1 to 797       797/797
(100 %)
11 diff
(98.7 %id)
DC319314 brain .g 1 to 586 1 to 586   tiling clone,   586/586
(100 %)
1 diff
(99.9 %id)
BQ067243 pooled brain, lung, testis .g 6 to 961 1 to 960       958/1084
(88 %)
16 diff
(98.6 %id)
DC354411 heart .g 13 to 612 1 to 600       600/600
(100 %)
1 diff
(99.9 %id)
BQ216056 large cell carcinoma, lung .g 32 to 623 24 to 622       599/1129
(53 %)
27 diff
(97.7 %id)
BG722971 testis .g 35 to 692 1 to 660       660/660
(100 %)
6 diff
(99.1 %id)
BG718978 testis .g 37 to 768 1 to 733       733/733
(100 %)
9 diff
(98.8 %id)
BU603399 mixed (pool of 40 RNAs) .g 37 to 623 1 to 592       592/743
(79 %)
15 diff
(98.0 %id)
BP370157 testis .g 40 to 615 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DC386555   .g 41 to 620 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
DC301797   .g 42 to 612 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC343360 thalamus .g 42 to 649 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BP226017   .g 42 to 624 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP284078 bone marrow .g 42 to 623 1 to 582       582/587
(99 %)
1 diff
(99.9 %id)
DC368038   .g 42 to 598 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC388174 small intestine .g 42 to 604 1 to 563       563/563
(100 %)
3 diff
(99.5 %id)
DC406393 thymus .g 42 to 581 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
DC414247 trachea .g 42 to 612 1 to 571       571/571
(100 %)
0 diff
(100 %id)
BP370460 testis .g 42 to 606 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
BY799270 eye .g 49 to 631 25 to 607       583/607
(96 %)
7 diff
(98.9 %id)
CX163479 human embryonic stem cells differentiated toan early endodermal cell type .g 53 to 937 3 to 887   tiling clone,   885/887
(99 %)
6 diff
(99.4 %id)
DC405118 thymus .g 54 to 622 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
BG529726 embryonal carcinoma, testis .g 55 to 671 1 to 617       617/617
(100 %)
3 diff
(99.6 %id)
BP313735 mammary gland .g 56 to 639 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
DA380499 thalamus .g 57 to 604 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA576179   .g 57 to 608 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DB051124 testis .g 57 to 627 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB129303 thymus .g 57 to 605 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
BF184364 bone marrow, from chronic myelogenous leukemia .g 60 to 580 1 to 520       520/520
(100 %)
3 diff
(99.5 %id)
CX759004 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 65 to 769 1 to 705     Submitted on the opposite strand 705/705
(100 %)
0 diff
(100 %id)
CX753697 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 74 to 828 1 to 746     Submitted on the opposite strand 746/837
(89 %)
13 diff
(98.5 %id)
BU192065 large cell carcinoma, lung .g 75 to 839 1 to 775       775/909
(85 %)
23 diff
(97.5 %id)
CX751261 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 75 to 828 1 to 744     Submitted on the opposite strand 744/800
(93 %)
10 diff
(98.8 %id)
AA317796 retina .g 866 to 1244 1 to 381   tiling clone,   381/381
(100 %)
2 diff
(99.5 %id)
NM_001178142.1   .h 1 to 9150 1 to 9150 exact RefSeq, AAA   9150/9150
(100 %)
0 diff
(100 %id)
BM467379 lymph, lymphoma, cell line .h 35 to 889 1 to 865   tiling clone, AAA   865/1097
(78 %)
21 diff
(98.1 %id)
AK303181 thymus .h 40 to 1442 1 to 1403 N133S tiling clone,   1403/1403
(100 %)
1 diff
(100.0 %id)
DC406209 thymus .h 40 to 598 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
DC405717 thymus .h 42 to 621 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
DC410327 thymus .i 1 to 595 2 to 596   tiling clone,   596/596
(100 %)
1 diff
(99.9 %id)
AA039977 uterus .i 372 to 848 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
AA031940 uterus .i 528 to 838 324 to 11       314/329
(95 %)
3 diff
(99.1 %id)
BI092082 cervix .i 562 to 1299 1 to 740   tiling clone,   740/741
(99 %)
5 diff
(99.4 %id)
AW590207 pooled germ cell tumors .i 653 to 1091 439 to 1   tiling clone,   439/439
(100 %)
3 diff
(99.4 %id)
BI667484 brain, hypothalamus .j 1 to 747 1 to 753 T2V K158T K159P E160Q I161E ... tiling clone,   753/753
(100 %)
11 diff
(98.6 %id)
TI_44343442   .j 7 to 747 95 to 841       747/841
(88 %)
6 diff
(99.3 %id)
BU935452 mixed (pool of 40 RNAs) .k 1 to 468 1 to 468   tiling clone,   468/497
(94 %)
2 diff
(99.6 %id)
BG825504 muscle, rhabdomyosarcoma .k 26 to 627 1 to 603   tiling clone,   603/605
(99 %)
6 diff
(99.1 %id)
DT217565 brain .l 1 to 713 1 to 713 exact tiling clone,   713/713
(100 %)
1 diff
(99.9 %id)
CN420172 embryonic stem cells, cell lines H1, H7, andH9 .m 1 to 554 2 to 556 E109G I110D E111R K112E Q113A ... tiling clone,   553/556
(99 %)
2 diff
(99.7 %id)
DC408961 thymus .n 1 to 547 1 to 547 exact tiling clone,   547/547
(100 %)
1 diff
(99.9 %id)
DA321332 hippocampus .o 339 to 542 363 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA075877 cerebellum .p 1 to 577 2 to 580 exact tiling clone, capped   579/579
(100 %)
2 diff
(99.7 %id)
BM454311 lymph, lymphoma, cell line .q 1 to 959 1 to 967 exact tiling clone,   967/1024
(94 %)
22 diff
(97.9 %id)
BU561196 testis .q 251 to 856 1 to 621   tiling clone,   621/742
(83 %)
16 diff
(97.9 %id)
AA382325 testis .r 1 to 415 1 to 416 D52G D54G D65X K69E R72X ... tiling clone,   416/416
(100 %)
13 diff
(96.9 %id)
DB103311 thymus .s 1 to 560 19 to 578 exact tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DA233188 brain .t 1 to 597 2 to 599 V19G S21E L22P F23I S24* tiling clone, capped   598/598
(100 %)
3 diff
(99.5 %id)
N28711 melanocyte .u 1 to 354 1 to 349   tiling clone, fully sequenced,   349/349
(100 %)
6 diff
(98.3 %id)
N23224 melanocyte .u 279 to 620 342 to 1 exact tiling clone,   342/342
(100 %)
0 diff
(100 %id)
N23047 melanocyte .u 324 to 610 295 to 11 F35Y fully sequenced,   285/295
(96 %)
1 diff
(99.7 %id)
DB108626 thymus .va 1 to 577 2 to 579 C58L T59H S60Q N61Q tiling clone, capped   578/578
(100 %)
2 diff
(99.7 %id)
U35117   .va 1 to 550 1 to 550   tiling clone,   550/550
(100 %)
0 diff
(100 %id)
AA312796 testis .vb 1 to 327 1 to 327 exact tiling clone,   327/327
(100 %)
2 diff
(99.4 %id)
DA438594 tongue, tumor tissue .vc 339 to 558 356 to 575 R39K tiling clone, capped   574/574
(100 %)
1 diff
(99.9 %id)
F07696 brain, total brain .vd-u 1 to 356 1 to 355   tiling clone,   355/355
(100 %)
1 diff
(99.8 %id)
CB962106 Blood vessels - aorta, basilar and artery .vd-u 213 to 879 1 to 674 F49L tiling clone,   674/748
(90 %)
12 diff
(98.4 %id)
DB106905 thymus .vd-u 550 to 1104 2 to 556 exact tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
Z40750 brain, total brain .vd-u 969 to 1286 318 to 1   tiling clone,   318/318
(100 %)
0 diff
(100 %id)
DB118100 thymus .ve-u 1 to 533 2 to 534 M35V tiling clone, fully sequenced, capped   533/533
(100 %)
3 diff
(99.5 %id)
AW803646 uterus .ve-u 340 to 668 1 to 329   tiling clone,   329/329
(100 %)
2 diff
(99.4 %id)
DB343784 thymus .ve-u 503 to 1042 541 to 1   tiling clone, fully sequenced,   541/541
(100 %)
3 diff
(99.5 %id)
DC344094 thalamus .vf 339 to 622 356 to 640 exact tiling clone,   640/640
(100 %)
1 diff
(99.9 %id)
DB155360 thymus .vg 1 to 582 2 to 584 Q53R tiling clone, capped   583/583
(100 %)
5 diff
(99.2 %id)
DC418005 trachea .vh 1 to 565 2 to 566 exact tiling clone,   569/569
(100 %)
0 diff
(100 %id)
GD156501   .vh 459 to 571 16 to 128   AAA   113/128
(88 %)
6 diff
(95.4 %id)
BX647881 human bone marrow Gene TFDP2, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
AV742290 cord Blood Gene TFDP2, variant not shown       AAA This clone was ignored    
CN289140 embryonic stem cells, DMSO-treated H9 cellline Gene TFDP2, variant not shown         Suspected internal deletion, this clone was ignored    
CR743207   Gene TFDP2, variant not shown         Suspected internal deletion, this clone was ignored    
BX456771 thymus Gene TFDP2, variant not shown         This clone was ignored    
BX456772 thymus Gene TFDP2, variant not shown         This clone was ignored    
DB314206 tongue, tumor tissue Gene TFDP2, variant not shown         This clone was ignored    
DA450549 tongue, tumor tissue Gene TFDP2, variant not shown       capped This clone was ignored    
BX503599   Gene TFDP2, variant not shown         This clone was ignored    
BX503600   Gene TFDP2, variant not shown         This clone was ignored    
BX956799   Gene TFDP2, variant not shown         Suspected internal deletion, this clone was ignored    
AI784151 pooled Gene TFDP2, variant not shown         This clone was ignored    
AW612322 Kidney Gene TFDP2, variant not shown         This clone was ignored    
BE644915 pooled Gene TFDP2, variant not shown         This clone was ignored    
BF797567 lymph, lymphoma, cell line Gene TFDP2, variant not shown         This clone was ignored    
BG118300 adenocarcinoma, cell line, Liver Gene TFDP2, variant not shown         This clone was ignored    
BG769112 melanotic melanoma, high MDR (cell line), skin Gene TFDP2, variant not shown         This clone was ignored    
BM999796 Fibrosarcoma Gene TFDP2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BQ434253 melanotic melanoma, skin Gene TFDP2, variant not shown         Suspected internal deletion, this clone was ignored    
DA619342   Gene TFDP2, variant not shown       capped      
TI_227713821   Gene TFDP2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd-u, .ve-u, .vf, .vg, .vh Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI