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Gene TFCP2L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene TFCP2L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC064698 Placenta, normal .a 1 to 4917 1 to 4916 R7H tiling clone, available from MGC, AAA   4916/4916
(100 %)
6 diff
(99.9 %id)
NM_014553.2   .a 1 to 9284 1 to 9284 exact RefSeq, AAA   9284/9284
(100 %)
0 diff
(100 %id)
AF198488 placenta .a 4 to 4916 1 to 4909   tiling clone,   4909/4909
(100 %)
11 diff
(99.8 %id)
BG013572 placenta_normal .a 609 to 851 256 to 13       244/256
(95 %)
2 diff
(99.3 %id)
BI000279 head_normal .a 773 to 1354 591 to 11       581/591
(98 %)
4 diff
(99.4 %id)
BG950146 colon .a 862 to 1188 81 to 408       380/413
(92 %)
14 diff
(96.7 %id)
AW997281 breast_normal .a 1131 to 1371 22 to 262       241/262
(91 %)
7 diff
(97.4 %id)
AW998186 breast_normal .a 1649 to 1879 230 to 2     Submitted on the opposite strand 229/230
(99 %)
0 diff
(100 %id)
BI029778 marrow .a 1686 to 2062 377 to 1       377/377
(100 %)
2 diff
(99.5 %id)
BE813831 breast_normal .a 1699 to 2322 630 to 9       622/630
(98 %)
0 diff
(100 %id)
BE005302 breast_normal .a 2135 to 2590 454 to 4     Submitted on the opposite strand 451/454
(99 %)
0 diff
(100 %id)
AW993570 breast_normal .a 2314 to 3010 13 to 702       690/703
(98 %)
19 diff
(97.3 %id)
BG289774 bladder, transitional cell papilloma, cell line .a 2795 to 3590 1 to 790       790/960
(82 %)
49 diff
(94.9 %id)
BP221146 colon .a 2921 to 3484 1 to 564       564/564
(100 %)
3 diff
(99.5 %id)
BE539427 cervix .a 3071 to 3189 1 to 118       118/118
(100 %)
1 diff
(99.2 %id)
AI694844 colon .a 3079 to 3529 461 to 11   AAA   451/451
(100 %)
3 diff
(99.4 %id)
BP333506 salivary gland .a 3113 to 3647 1 to 537       537/581
(92 %)
18 diff
(97.0 %id)
AA427660 ovarian tumor, ovary .a 3309 to 3757 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
BP256786 Kidney .a 3431 to 4012 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
AW994068 breast_normal .a 3920 to 4523 644 to 20     Submitted on the opposite strand 625/644
(97 %)
0 diff
(100 %id)
BM310934 Pancreas, Purified pancreatic islet .a 4056 to 4596 1 to 542       542/542
(100 %)
4 diff
(99.3 %id)
CK821257 Pancreas, Purified pancreatic islet .a 4074 to 4670 1 to 598     Submitted on the opposite strand 598/598
(100 %)
4 diff
(99.4 %id)
BU608032 Human Lung Epithelial cells, lung .a 4186 to 4917 750 to 19   AAA   732/732
(100 %)
12 diff
(98.4 %id)
CD625770   .a 4411 to 4856 1 to 446       446/451
(98 %)
8 diff
(98.3 %id)
BU607726 Human Lung Epithelial cells, lung .a 4460 to 4917 476 to 19   tiling clone, AAA   458/479
(95 %)
1 diff
(99.8 %id)
BX108828 heart .a 4464 to 4917 1 to 453   AAA   453/453
(100 %)
2 diff
(99.6 %id)
AA368613 placenta .a 4481 to 4833 1 to 355       355/355
(100 %)
4 diff
(98.9 %id)
BM310638 Pancreas, Purified pancreatic islet .a 4485 to 5037 553 to 1       553/553
(100 %)
1 diff
(99.9 %id)
AA011059 heart .a 4501 to 4724 1 to 226   fully sequenced,   226/226
(100 %)
1 diff
(99.6 %id)
AW955888   .a 4537 to 4893 1 to 346       346/350
(98 %)
18 diff
(94.9 %id)
AA677440 liver and spleen .a 4542 to 4909 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AW052024 Kidney .a 4578 to 4918 342 to 1       342/342
(100 %)
10 diff
(97.1 %id)
AI633325 Kidney, renal cell tumor .a 4621 to 5014 414 to 21   AAA   394/394
(100 %)
12 diff
(97.0 %id)
AA865554 pooled germ cell tumors .a 4640 to 4917 290 to 13   AAA   278/278
(100 %)
0 diff
(100 %id)
CK429551 eye, lacrimal gland .a 4641 to 5294 1 to 654       654/654
(100 %)
0 diff
(100 %id)
CD625771   .a 4688 to 5475 794 to 6   tiling clone,   789/794
(99 %)
0 diff
(100 %id)
AA011060 heart .a 4694 to 4917 229 to 1   fully sequenced,   229/229
(100 %)
2 diff
(99.2 %id)
FN157951 breast carcinoma .a 4813 to 4895 1 to 82       82/82
(100 %)
3 diff
(96.4 %id)
BE177677 head_neck .a 4821 to 5490 679 to 13     Submitted on the opposite strand 667/679
(98 %)
0 diff
(100 %id)
BG222147 moderate to poorly differentiated invasivecarcinoma, tongue .a 5082 to 5235 1 to 154       154/154
(100 %)
5 diff
(96.8 %id)
BE931608 head_neck .a 5361 to 5865 505 to 1   tiling clone,   505/505
(100 %)
0 diff
(100 %id)
BG479778 choriocarcinoma, placenta .a 5592 to 6142 1 to 562       562/1010
(55 %)
30 diff
(97.1 %id)
BE280861 choriocarcinoma, placenta .a 5613 to 6254 1 to 643   tiling clone,   643/648
(99 %)
8 diff
(98.8 %id)
BC020554 Placenta, choriocarcinoma .a 5890 to 9281 1 to 3392   tiling clone, available from MGC, AAA   3392/3392
(100 %)
3 diff
(100.0 %id)
BE018831 cervix .a 5891 to 6338 1 to 448   available from MGC,   448/448
(100 %)
8 diff
(98.3 %id)
CK429597 eye, lacrimal gland .a 6183 to 6770 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
BF825431 head_normal .a 6186 to 6584 398 to 1     Submitted on the opposite strand 398/398
(100 %)
5 diff
(98.8 %id)
TI_159715035   .a 6273 to 7066 847 to 56       792/1111
(71 %)
0 diff
(100 %id)
AI792404 Kidney .a 6433 to 6903 20 to 490       471/490
(96 %)
6 diff
(98.8 %id)
CB851835 Human Lung Epithelial cells, lung .a 6469 to 6933 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
TI_159724146   .a 6671 to 7570 969 to 82   AAA   888/1019
(87 %)
17 diff
(98.4 %id)
TI_149298838   .a 6698 to 7581 954 to 79       876/1066
(82 %)
0 diff
(100 %id)
CD723979 eye, lacrimal gland .a 6725 to 7334 1 to 610   tiling clone,   610/611
(99 %)
3 diff
(99.6 %id)
TI_149313690   .a 6742 to 7570 903 to 88   AAA   816/962
(84 %)
25 diff
(97.5 %id)
BU684754 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 6904 to 7581 685 to 6       680/685
(99 %)
0 diff
(100 %id)
CB305549 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 6963 to 7570 625 to 17   AAA   609/609
(100 %)
1 diff
(99.9 %id)
AW195353 Kidney .a 7034 to 7570 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
CA944724 Human Lung Epithelial cells, lung .a 7062 to 7570 525 to 17   AAA   509/509
(100 %)
0 diff
(100 %id)
BF592110 Kidney .a 7081 to 7558 487 to 11       477/487
(97 %)
0 diff
(100 %id)
BF437146 Prostate .a 7081 to 7570 490 to 1       490/490
(100 %)
6 diff
(98.8 %id)
BE857167 brain, glioblastoma (pooled) .a 7087 to 7570 485 to 1       485/485
(100 %)
6 diff
(98.8 %id)
AI347069 adenocarcinoma, colon .a 7104 to 7570 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AI421402 brain, glioblastoma (pooled) .a 7104 to 7570 467 to 1       467/467
(100 %)
1 diff
(99.8 %id)
AA341145 Kidney .a 7108 to 7422 1 to 319       319/319
(100 %)
4 diff
(98.8 %id)
BX110666 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 7113 to 7570 472 to 15   AAA   458/458
(100 %)
1 diff
(99.8 %id)
AI733680 Kidney .a 7123 to 7570 449 to 1       449/454
(98 %)
1 diff
(99.8 %id)
AI241361 Kidney .a 7126 to 7570 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AA975148 Kidney .a 7146 to 7570 422 to 1       422/422
(100 %)
5 diff
(98.9 %id)
AI985135 Kidney .a 7146 to 7570 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AW439823 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 7146 to 7570 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
AI075110 Kidney .a 7155 to 7570 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AI263088 Kidney .a 7155 to 7570 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AI262907 Kidney .a 7156 to 7570 415 to 1       415/415
(100 %)
5 diff
(98.8 %id)
AA705529 liver and spleen .a 7171 to 7570 399 to 1       399/399
(100 %)
3 diff
(99.3 %id)
W86076 liver and spleen .a 7179 to 7570 401 to 1       401/406
(98 %)
20 diff
(95.1 %id)
AW206346   .a 7180 to 7570 406 to 16   AAA   391/392
(99 %)
3 diff
(99.3 %id)
BE327117 carcinoid, lung .a 7222 to 7569 348 to 1       348/348
(100 %)
0 diff
(100 %id)
BE674454 carcinoid, lung .a 7223 to 7573 351 to 1       351/351
(100 %)
0 diff
(100 %id)
AW136323   .a 7232 to 7570 356 to 18   AAA   339/349
(97 %)
1 diff
(99.8 %id)
AI491815 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 7237 to 7570 333 to 1       333/335
(99 %)
2 diff
(99.5 %id)
BE328851 carcinoid, lung .a 7265 to 7569 305 to 1       305/305
(100 %)
0 diff
(100 %id)
BE671516 carcinoid, lung .a 7266 to 7573 308 to 1       308/308
(100 %)
0 diff
(100 %id)
BF433102 carcinoid, lung .a 7266 to 7573 308 to 1       308/308
(100 %)
0 diff
(100 %id)
BI518390 pooled colon, kidney, stomach .a 7398 to 7920 8 to 526       519/526
(98 %)
6 diff
(98.9 %id)
TI_45235843   .a 7398 to 7920 8 to 526       519/526
(98 %)
6 diff
(98.9 %id)
TI_149279854   .a 7532 to 8357 46 to 851     Submitted on the opposite strand 806/1144
(70 %)
6 diff
(99.5 %id)
BU678926 lung, Primary Lung Epithelial Cells .a 7532 to 8094 11 to 573     Submitted on the opposite strand 563/577
(97 %)
3 diff
(99.5 %id)
BM019092 astrocytoma grade IV, cell line, brain .a 7732 to 8423 1 to 704       704/768
(91 %)
23 diff
(97.1 %id)
TI_59389771   .a 7733 to 8423 60 to 762       703/767
(91 %)
23 diff
(97.1 %id)
BQ082334 stomach .a 8076 to 8569 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
AA341106 Kidney .a 8176 to 8485 1 to 311       311/311
(100 %)
1 diff
(99.7 %id)
CD512690 Pooled-Skin .a 8401 to 9130 1 to 735       735/747
(98 %)
11 diff
(98.6 %id)
TI_149315099   .a 8439 to 9284 907 to 77   AAA   831/981
(84 %)
23 diff
(97.7 %id)
BI518071 pooled colon, kidney, stomach .a 8441 to 9210 791 to 9       783/791
(98 %)
0 diff
(100 %id)
TI_45235844   .a 8441 to 9210 791 to 9       783/791
(98 %)
0 diff
(100 %id)
CB242367 Human Lung Epithelial cells, lung .a 8525 to 9284 766 to 16   AAA   751/751
(100 %)
9 diff
(98.9 %id)
BE170821 head_neck .a 8650 to 8824 186 to 11     Submitted on the opposite strand 176/186
(94 %)
0 diff
(100 %id)
BQ953674 sciatic nerve .a 8659 to 9284 1 to 626   AAA   626/626
(100 %)
0 diff
(100 %id)
BQ045123 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 8662 to 9284 640 to 16   AAA   625/625
(100 %)
2 diff
(99.7 %id)
AI928242 Kidney .a 8709 to 9284 577 to 1       577/577
(100 %)
2 diff
(99.7 %id)
AW271767 Kidney .a 8738 to 9284 547 to 1       547/547
(100 %)
0 diff
(100 %id)
AW173671 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 8750 to 9284 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
BE003001 breast_normal .a 8774 to 9065 31 to 322       292/322
(90 %)
6 diff
(98.2 %id)
AI434765 Kidney .a 8775 to 9287 515 to 3       513/515
(99 %)
0 diff
(100 %id)
AI151375 placenta .a 8777 to 9284 508 to 1       508/508
(100 %)
0 diff
(100 %id)
BF223573 carcinoid, lung .a 8777 to 9284 522 to 14   AAA   509/509
(100 %)
7 diff
(98.7 %id)
BE138747 adenocarcinoma, Pancreas .a 8780 to 9285 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AI678967 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8783 to 9284 518 to 17   AAA   502/502
(100 %)
2 diff
(99.7 %id)
AI831850 colon, colon tumor, RER+ .a 8783 to 9283 501 to 1       501/501
(100 %)
0 diff
(100 %id)
BQ012939 placenta .a 8793 to 9284 507 to 16   AAA   492/492
(100 %)
0 diff
(100 %id)
AI453406 adenocarcinoma, Pancreas .a 8814 to 9286 473 to 1       473/473
(100 %)
0 diff
(100 %id)
AI973244 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 8818 to 9209 392 to 1       392/392
(100 %)
0 diff
(100 %id)
AI990687 pooled germ cell tumors .a 8823 to 9208 396 to 11   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 386/386
(100 %)
0 diff
(100 %id)
AI245431 Kidney .a 8837 to 9285 449 to 1       449/449
(100 %)
0 diff
(100 %id)
BE671688 carcinoid, lung .a 8837 to 9282 460 to 15       446/460
(96 %)
0 diff
(100 %id)
AW772502 Kidney .a 8839 to 9284 446 to 1       446/446
(100 %)
3 diff
(99.4 %id)
AW874390 tumor, uterus .a 8841 to 9284 456 to 13   AAA   444/444
(100 %)
1 diff
(99.8 %id)
AI189643 placenta .a 8842 to 9284 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI985235 Kidney .a 8842 to 9284 445 to 1       445/445
(100 %)
2 diff
(99.6 %id)
AI522077 Kidney .a 8859 to 9281 436 to 14   AAA   423/423
(100 %)
0 diff
(100 %id)
AI347815 2 pooled tumors (clear cell type), Kidney .a 8861 to 9287 429 to 3   tiling clone,   427/429
(99 %)
0 diff
(100 %id)
BM055156 Islets of Langerhans, Pancreas .a 8867 to 9284 1 to 418   AAA   418/418
(100 %)
0 diff
(100 %id)
BM055271 Islets of Langerhans, Pancreas .a 8867 to 9275 1 to 409       409/409
(100 %)
1 diff
(99.8 %id)
AW611639 Kidney .a 8870 to 9208 356 to 17   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 340/340
(100 %)
7 diff
(98.0 %id)
AA716113 heart .a 8884 to 9284 401 to 1       401/401
(100 %)
0 diff
(100 %id)
AW972898   .a 8909 to 9279 108 to 481       374/486
(76 %)
6 diff
(98.8 %id)
AW029111 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8910 to 9284 389 to 15   AAA   375/380
(98 %)
2 diff
(99.5 %id)
AW169738 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 8910 to 9284 388 to 14   AAA   375/375
(100 %)
0 diff
(100 %id)
AA522838 metastatic prostate bone lesion .a 8924 to 9287 1 to 365       365/382
(95 %)
2 diff
(99.5 %id)
AI797377 pooled .a 8924 to 9284 361 to 1       361/361
(100 %)
0 diff
(100 %id)
BU753934 placenta .a 8935 to 9284 364 to 15   AAA   350/350
(100 %)
0 diff
(100 %id)
AI651066 Kidney .a 8937 to 9284 348 to 1       348/348
(100 %)
0 diff
(100 %id)
AW028478 Kidney .a 8944 to 9214 271 to 1       271/271
(100 %)
1 diff
(99.7 %id)
AW607243 head_neck .a 8973 to 9079 1 to 106       106/106
(100 %)
2 diff
(98.2 %id)
AW193124 adenocarcinoma, Pancreas .a 8975 to 9286 310 to 1       310/310
(100 %)
3 diff
(99.1 %id)
AI609686 ovary, tumor, 5 pooled (see description) .a 8979 to 9284 306 to 1       306/306
(100 %)
0 diff
(100 %id)
AW300331 Kidney .a 8979 to 9284 306 to 1       306/306
(100 %)
5 diff
(98.4 %id)
AW772315 Kidney .a 8979 to 9284 306 to 1       306/306
(100 %)
0 diff
(100 %id)
BX102737 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8981 to 9284 318 to 15   AAA   304/304
(100 %)
0 diff
(100 %id)
BE302392 cervix .a 8982 to 9282 301 to 1   available from MGC,   301/301
(100 %)
9 diff
(97.1 %id)
BF513158   .a 9002 to 9219 10 to 226     Submitted on the opposite strand 217/236
(91 %)
3 diff
(98.8 %id)
AI985359 Kidney .a 9084 to 9220 137 to 1       137/137
(100 %)
4 diff
(97.1 %id)
AW015230   .a 9167 to 9284 132 to 15   AAA   118/131
(90 %)
0 diff
(100 %id)
AI522087 Kidney .a 9197 to 9284 88 to 1       88/88
(100 %)
0 diff
(100 %id)
CB989962 Human Placenta, placenta .b 1 to 705 23 to 736   tiling clone,   714/770
(92 %)
16 diff
(98.0 %id)
AL137740 brain .b 5 to 4727 1 to 4715   tiling clone, available from DKFZ, AAA   4715/4715
(100 %)
23 diff
(99.6 %id)
DB238655 trachea .c 1 to 602 2 to 603 exact tiling clone, capped   602/602
(100 %)
1 diff
(99.9 %id)
BF370118 prostate_normal .d-u 1 to 457 457 to 1 exact tiling clone,   457/458
(99 %)
1 diff
(99.8 %id)
AK311692 trachea .e 1 to 912 2 to 913 exact tiling clone,   913/913
(100 %)
1 diff
(99.9 %id)
DB209686 trachea .e 1 to 552 2 to 553 exact capped   552/552
(100 %)
0 diff
(100 %id)
BF768186 colon_normal Gene TFCP2L1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AI765182 2 pooled tumors (clear cell type), Kidney Gene TFCP2L1, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
AW236622 pooled germ cell tumors Gene TFCP2L1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI