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Gene TCP10TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
33 supporting clones for gene TCP10 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_004610.3   .a 1 to 1273 1 to 1273 exact RefSeq,   1273/1273
(100 %)
0 diff
(100 %id)
TI_57175313.
matches multiple genes
  .a 44 to 862 29 to 857   tiling clone, also hits gene TCP10L2 829/858
(96 %)
27 diff
(96.9 %id)
BC063451 Brain, adult medulla .a 45 to 2184 1 to 2140 S15G G18E H104P D110E G186E ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2140/2140
(100 %)
13 diff
(99.4 %id)
BI828613.
matches multiple genes
brain, medulla .a 45 to 862 1 to 828   tiling clone, also hits gene TCP10L2 828/829
(99 %)
23 diff
(97.3 %id)
TI_1948215620   .a 132 to 660 128 to 656   fully sequenced,   529/656
(80 %)
9 diff
(98.7 %id)
TI_1948215786   .a 132 to 723 132 to 723   fully sequenced,   592/723
(81 %)
9 diff
(98.8 %id)
TI_1948215458   .a 320 to 1195 1008 to 123       886/1304
(67 %)
34 diff
(97.4 %id)
DB524842 testis .a 545 to 1266 1 to 721     Submitted on the opposite strand 719/721
(99 %)
11 diff
(98.5 %id)
TI_1948215621   .a 599 to 1195 718 to 122   fully sequenced,   597/718
(83 %)
2 diff
(99.8 %id)
TI_1948215787   .a 693 to 1195 625 to 122   fully sequenced,   504/625
(80 %)
2 diff
(99.7 %id)
U03399 testes .b 1 to 2187 1 to 2181 H104P D110E G186E A256S K264E ... tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 2181/2181
(100 %)
16 diff
(99.3 %id)
BG723543.
matches multiple genes
testis .c 1 to 586 1 to 597   tiling clone, available from MGC, also hits gene TCP10L2 597/788
(75 %)
28 diff
(96.5 %id)
BC068592 testis .c 6 to 3219 1 to 3209   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 3209/3209
(100 %)
17 diff
(99.5 %id)
CD358571 testis .c 1314 to 1850 67 to 614   available from MGC,   548/1194
(45 %)
22 diff
(98.2 %id)
AA977912 Kidney, kidney tumor .c 2473 to 2724 1 to 252     Submitted on the opposite strand 252/252
(100 %)
0 diff
(100 %id)
AI954817 pooled germ cell tumors .d 1 to 442 461 to 20 V33G tiling clone, AAA   442/442
(100 %)
6 diff
(98.7 %id)
BF057216 pooled germ cell tumors .d 14 to 442 448 to 20   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 429/448
(95 %)
2 diff
(99.6 %id)
AW027471 pooled germ cell tumors .d 26 to 442 436 to 20   AAA   417/417
(100 %)
8 diff
(98.1 %id)
AI209148.
matches multiple genes
  .d 101 to 646 548 to 4   tiling clone, also hits gene TCP10L2 545/548
(99 %)
3 diff
(99.5 %id)
BI458674 testis .e 1 to 730 1 to 732 S15G G18E Q24T Q25A Q26A ... tiling clone, available from MGC,   732/732
(100 %)
21 diff
(97.2 %id)
BG717741.
matches multiple genes
testis .e 6 to 704 1 to 761   tiling clone, available from MGC, also hits gene TCP10L2 558/762
(73 %)
54 diff
(93.0 %id)
BC034995 testis .e 6 to 4100 1 to 4095 S15G G18E tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 4095/4095
(100 %)
8 diff
(99.9 %id)
DB442991.
matches multiple genes
testis .e 11 to 430 1 to 420     also hits gene TCP10L2 420/420
(100 %)
1 diff
(99.8 %id)
DB446540.
matches multiple genes
testis .e 11 to 442 1 to 432     also hits gene TCP10L2 432/432
(100 %)
1 diff
(99.8 %id)
DB459376.
matches multiple genes
testis .e 35 to 518 1 to 484   tiling clone, also hits gene TCP10L2 484/484
(100 %)
2 diff
(99.6 %id)
DB450138 testis .e 40 to 492 1 to 455       455/455
(100 %)
8 diff
(98.3 %id)
CR746742.
matches multiple genes
brain, medulla .e 50 to 591 1 to 542     also hits gene TCP10L2 542/542
(100 %)
6 diff
(98.9 %id)
AA994391 pooled .e 131 to 504 373 to 1   tiling clone,   373/374
(99 %)
5 diff
(98.7 %id)
AA723845.
matches multiple genes
  .e 1895 to 2267 372 to 1     also hits gene TCP10L2 372/372
(100 %)
1 diff
(99.8 %id)
AA563930.
matches multiple genes
colon, tumor .e 1896 to 2446 550 to 1   tiling clone, also hits gene TCP10L2 550/550
(100 %)
5 diff
(99.1 %id)
BC033909 testis .f 1 to 2705 1 to 2704 H104P D110E tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2704/2704
(100 %)
21 diff
(99.3 %id)
AW086030.
matches multiple genes
ovary, papillary serous carcinoma .f 2234 to 2663 447 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene TCP10L2 431/431
(100 %)
1 diff
(99.8 %id)
DB507928 testis .f 2299 to 2705 1 to 407     Submitted on the opposite strand 407/407
(100 %)
8 diff
(98.1 %id)
AA705836.
matches multiple genes
  .f 2542 to 2705 198 to 33   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene TCP10L2 166/166
(100 %)
3 diff
(98.2 %id)
DB442991.
matches multiple genes
testis L2.a 6 to 425 1 to 420     also hits gene TCP10L2 420/420
(100 %)
3 diff
(99.3 %id)
DB446540.
matches multiple genes
testis L2.a 6 to 437 1 to 432     also hits gene TCP10L2 432/432
(100 %)
3 diff
(99.4 %id)
DB459376.
matches multiple genes
testis L2.a 30 to 513 1 to 484   tiling clone, also hits gene TCP10L2 484/484
(100 %)
4 diff
(99.2 %id)
TI_57175313.
matches multiple genes
  L2.a 44 to 860 29 to 854   tiling clone, also hits gene TCP10L2 826/858
(96 %)
25 diff
(97.1 %id)
CR746742.
matches multiple genes
brain, medulla L2.a 45 to 586 1 to 542     also hits gene TCP10L2 542/542
(100 %)
7 diff
(98.8 %id)
BI828613.
matches multiple genes
brain, medulla L2.a 45 to 860 1 to 825   tiling clone, also hits gene TCP10L2 825/829
(99 %)
22 diff
(97.4 %id)
BG723543.
matches multiple genes
testis L2.b 1 to 586 1 to 597   tiling clone, available from MGC, also hits gene TCP10L2 597/788
(75 %)
29 diff
(96.4 %id)
AW086030.
matches multiple genes
ovary, papillary serous carcinoma L2.b 763 to 1192 447 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene TCP10L2 431/431
(100 %)
3 diff
(99.4 %id)
AA705836.
matches multiple genes
  L2.b 1071 to 1235 198 to 33   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene TCP10L2 166/166
(100 %)
2 diff
(98.8 %id)
AA723845.
matches multiple genes
  L2.c 201 to 573 372 to 1     also hits gene TCP10L2 372/372
(100 %)
2 diff
(99.5 %id)
AA563930.
matches multiple genes
colon, tumor L2.c 202 to 752 550 to 1   tiling clone, also hits gene TCP10L2 550/550
(100 %)
5 diff
(99.1 %id)
BG717741.
matches multiple genes
testis L2.d 1 to 699 1 to 761   tiling clone, available from MGC, also hits gene TCP10L2 558/762
(73 %)
54 diff
(93.0 %id)
AI209148.
matches multiple genes
  L2.e 314 to 859 548 to 4   tiling clone, also hits gene TCP10L2 545/548
(99 %)
4 diff
(99.3 %id)
BC065839 testis Gene TCP10, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI