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Gene TCN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene TCN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AU100043   .a 1 to 300 1 to 300   tiling clone,   300/300
(100 %)
4 diff
(98.7 %id)
BP274042   .a 1 to 566 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
BP370727 testis .a 2 to 580 1 to 579   tiling clone,   579/579
(100 %)
3 diff
(99.5 %id)
NM_001062.3   .a 8 to 1573 1 to 1566 exact RefSeq, AAA   1566/1566
(100 %)
0 diff
(100 %id)
J05068 blood .a 31 to 1567 1 to 1537 I119T     1537/1537
(100 %)
3 diff
(99.9 %id)
BF213856 bone marrow, from acute myelogenous leukemia .a 86 to 731 1 to 656       656/903
(72 %)
34 diff
(96.3 %id)
CB959482 Pooled-Glandular .a 86 to 807 1 to 724       724/724
(100 %)
7 diff
(99.1 %id)
BX480228   .a 88 to 671 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
CD688325 normal nasopharynx .a 89 to 635 38 to 584       547/584
(93 %)
10 diff
(98.3 %id)
CD695577 normal nasopharynx .a 89 to 471 33 to 415       383/415
(92 %)
8 diff
(98.1 %id)
CD703301 normal nasopharynx .a 89 to 538 23 to 472       450/472
(95 %)
7 diff
(98.6 %id)
CD706735 normal nasopharynx .a 89 to 545 21 to 478       458/478
(95 %)
11 diff
(97.7 %id)
BC018632 Bone marrow, chronic myelogenous leukemia .a 89 to 1573 4 to 1488 E424* available from MGC, AAA   1485/1485
(100 %)
5 diff
(99.7 %id)
BP333391 salivary gland .a 89 to 661 1 to 575       575/581
(98 %)
5 diff
(99.2 %id)
BP334130 salivary gland .a 89 to 672 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BP334292 salivary gland .a 89 to 661 1 to 574       574/583
(98 %)
2 diff
(99.7 %id)
BF238652 bone marrow, from chronic myelogenous leukemia .a 90 to 764 1 to 664   available from MGC,   666/893
(74 %)
41 diff
(95.5 %id)
AK292990 trachea .a 91 to 1547 1 to 1457 exact tiling clone,   1457/1457
(100 %)
1 diff
(100.0 %id)
CD695115 normal nasopharynx .a 92 to 324 1 to 242       242/242
(100 %)
10 diff
(95.9 %id)
DB237765 trachea .a 92 to 661 2 to 571   capped   570/579
(98 %)
5 diff
(99.2 %id)
TI_57151158   .a 98 to 998 24 to 938       915/938
(97 %)
26 diff
(97.3 %id)
CV027990 mixed .a 106 to 690 1 to 585       585/585
(100 %)
5 diff
(99.2 %id)
TI_1948093579   .a 106 to 859 138 to 893       756/1256
(60 %)
17 diff
(98.7 %id)
TI_1948093739   .a 106 to 773 135 to 807       673/1324
(50 %)
26 diff
(98.1 %id)
TI_1948093905   .a 106 to 760 135 to 792   fully sequenced,   658/792
(83 %)
6 diff
(99.3 %id)
TI_1948094073   .a 106 to 657 134 to 691       558/1341
(41 %)
27 diff
(98.0 %id)
BX281344 pooled colon, kidney, stomach .a 108 to 629 1 to 522       522/522
(100 %)
0 diff
(100 %id)
BI762019 pooled colon, kidney, stomach .a 108 to 998 1 to 905       905/905
(100 %)
20 diff
(97.8 %id)
CB123040 Liver .a 108 to 472 1 to 365       365/365
(100 %)
0 diff
(100 %id)
CD723971 eye, lacrimal gland .a 108 to 726 1 to 619       619/619
(100 %)
0 diff
(100 %id)
AA155695 Pancreas .a 110 to 345 1 to 241       241/241
(100 %)
9 diff
(96.3 %id)
AA347734 heart .a 115 to 448 1 to 333       333/333
(100 %)
3 diff
(99.1 %id)
CD610400   .a 117 to 769 1 to 645       647/651
(99 %)
20 diff
(97.0 %id)
AA336402 endometrium .a 119 to 410 1 to 294       294/295
(99 %)
5 diff
(98.4 %id)
AA337659 endometrium .a 222 to 506 1 to 285       285/325
(87 %)
4 diff
(98.8 %id)
BQ084191 stomach .a 304 to 700 1 to 397       397/397
(100 %)
0 diff
(100 %id)
BE005785 breast_normal .a 365 to 499 137 to 5     Submitted on the opposite strand 133/151
(88 %)
0 diff
(100 %id)
BE005789 breast_normal .a 365 to 504 143 to 8     Submitted on the opposite strand 136/150
(90 %)
0 diff
(100 %id)
BE005747 breast_normal .a 373 to 822 1 to 451       451/451
(100 %)
15 diff
(96.7 %id)
BE814578 breast_normal .a 420 to 696 1 to 279       279/279
(100 %)
4 diff
(98.6 %id)
CB984857 Pooled-Glandular .a 430 to 1010 1 to 591       591/671
(88 %)
15 diff
(97.8 %id)
AW991325 breast_normal .a 452 to 743 298 to 10     Submitted on the opposite strand 292/300
(97 %)
6 diff
(98.0 %id)
BF748785 breast_normal .a 453 to 1042 625 to 37     Submitted on the opposite strand 589/646
(91 %)
1 diff
(99.9 %id)
BE005813 breast_normal .a 473 to 1144 682 to 12     Submitted on the opposite strand 671/683
(98 %)
2 diff
(99.8 %id)
CD610401   .a 511 to 1155 646 to 3       644/664
(96 %)
15 diff
(97.8 %id)
AW376481 colon .a 607 to 1079 1 to 473       473/473
(100 %)
5 diff
(99.0 %id)
AW604102 colon .a 607 to 1079 1 to 473       473/473
(100 %)
3 diff
(99.4 %id)
AW604104 colon .a 607 to 1079 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
AW376461 colon .a 617 to 1079 1 to 463       463/463
(100 %)
3 diff
(99.4 %id)
BE719572 head_neck .a 665 to 1158 38 to 537       499/537
(92 %)
10 diff
(98.2 %id)
BE719513 head_neck .a 667 to 1120 1 to 458       458/458
(100 %)
9 diff
(98.1 %id)
BE090848 breast .a 681 to 969 1 to 291       291/300
(97 %)
11 diff
(96.4 %id)
BM768806 stomach .a 716 to 1326 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
BM769239 stomach .a 716 to 1214 1 to 499       499/499
(100 %)
0 diff
(100 %id)
BM769834 stomach .a 716 to 1364 1 to 649       649/649
(100 %)
0 diff
(100 %id)
BM830954 stomach .a 716 to 1316 1 to 601       601/601
(100 %)
0 diff
(100 %id)
TI_1948093906   .a 730 to 1374 769 to 125   fully sequenced,   645/769
(83 %)
1 diff
(99.9 %id)
BM830340 stomach .a 752 to 1250 1 to 499       499/499
(100 %)
0 diff
(100 %id)
BM769693 stomach .a 762 to 1443 1 to 681       681/681
(100 %)
1 diff
(99.9 %id)
AA372040 parathyroid gland .a 848 to 1175 1 to 329       329/329
(100 %)
2 diff
(99.4 %id)
T27657 uterus .a 894 to 1213 1 to 322       322/323
(99 %)
7 diff
(97.9 %id)
BM855745 stomach .a 933 to 1267 1 to 335       335/335
(100 %)
1 diff
(99.8 %id)
BF894841 marrow .a 947 to 1190 3 to 239       237/239
(99 %)
6 diff
(97.5 %id)
BE720002 head_neck .a 1091 to 1327 243 to 7       237/243
(97 %)
0 diff
(100 %id)
AA155640 Pancreas .a 1123 to 1572 453 to 4       450/453
(99 %)
0 diff
(100 %id)
AW293653   .a 1344 to 1573 247 to 18   AAA   230/259
(88 %)
1 diff
(99.7 %id)
CD722459 eye, lacrimal gland .a 1376 to 1573 1 to 198   tiling clone, AAA   198/198
(100 %)
0 diff
(100 %id)
BM769378 stomach .a 1465 to 1573 1 to 109   AAA   109/109
(100 %)
0 diff
(100 %id)
BM818792 stomach .a 1465 to 1573 1 to 109   AAA   109/109
(100 %)
0 diff
(100 %id)
CB048957 Prostate .b 1 to 689 1 to 691   tiling clone,   689/691
(99 %)
5 diff
(99.3 %id)
AA295454 Pancreas .b 21 to 383 1 to 366   tiling clone,   366/367
(99 %)
12 diff
(96.8 %id)
BF102528 adenocarcinoma, Prostate .b 612 to 1301 1 to 688       688/690
(99 %)
13 diff
(98.2 %id)
TI_149272477   .b 624 to 1301 772 to 95   tiling clone,   678/1109
(61 %)
0 diff
(100 %id)
BU689883 Human Lung Epithelial cells, lung .b 624 to 1294 687 to 17   AAA   671/676
(99 %)
2 diff
(99.8 %id)
AW192630 adenocarcinoma, Pancreas .b 666 to 1297 632 to 1       632/632
(100 %)
1 diff
(99.9 %id)
AW337203 adenocarcinoma, Pancreas .b 669 to 1301 633 to 1   tiling clone,   633/633
(100 %)
2 diff
(99.7 %id)
BU675098 lung, Primary Lung Epithelial Cells .b 720 to 1294 593 to 19   AAA   575/575
(100 %)
0 diff
(100 %id)
CB048956 Prostate .b 725 to 1296 599 to 28   AAA   572/572
(100 %)
0 diff
(100 %id)
AI582439 adenocarcinoma, Pancreas .b 817 to 1285 465 to 1       465/490
(94 %)
20 diff
(96.0 %id)
BG779234 adenocarcinoma, Prostate .b 836 to 1295 1 to 460   AAA   460/460
(100 %)
3 diff
(99.4 %id)
TI_149276650   .b 846 to 1292 539 to 93   AAA   447/832
(53 %)
0 diff
(100 %id)
BU677325 lung, Primary Lung Epithelial Cells .b 846 to 1292 465 to 19   AAA   447/455
(98 %)
0 diff
(100 %id)
AI582387 adenocarcinoma, Pancreas .b 901 to 1296 388 to 1       388/388
(100 %)
12 diff
(97.0 %id)
AI583419 adenocarcinoma, Pancreas .b 947 to 1301 358 to 1       358/425
(84 %)
6 diff
(98.6 %id)
BG779810 adenocarcinoma, Prostate .c 1 to 738 8 to 756   tiling clone,   754/760
(99 %)
25 diff
(96.8 %id)
AI738761 colon, colon tumor, RER+ .c 639 to 1103 487 to 23   tiling clone, AAA   465/465
(100 %)
7 diff
(98.5 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC