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Gene TCFL5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
318 supporting clones for gene TCFL5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC046933 Skin, melanotic melanoma. .a 1 to 2454 1 to 2451 N303D tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2451/2451
(100 %)
5 diff
(99.8 %id)
BP295527   .a 1055 to 1632 1 to 579       579/582
(99 %)
3 diff
(99.5 %id)
BF983310 duodenal adenocarcinoma, cell line, small intestine .a 1722 to 2416 8 to 692   tiling clone,   685/916
(74 %)
6 diff
(99.4 %id)
BQ448177 Knee, Osteoarthritic Cartilage .a 1741 to 2454 731 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 713/713
(100 %)
2 diff
(99.8 %id)
BM831267 stomach .a 1883 to 2484 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
DB577607 hypothalamus .a 1962 to 2454 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
BU160885 melanotic melanoma, skin .a 2020 to 2880 1 to 867       867/872
(99 %)
11 diff
(98.8 %id)
DB192184 ovary, tumor tissue .a 2135 to 2690 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
TI_59392827   .a 2228 to 2763 49 to 587       539/539
(100 %)
9 diff
(98.4 %id)
BM014770 breast, mammary adenocarcinoma, cell line .a 2229 to 2763 1 to 538       538/538
(100 %)
9 diff
(98.4 %id)
CA423630 cell lines, Chondrosarcoma .a 2300 to 2996 716 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 698/699
(99 %)
3 diff
(99.6 %id)
BE143194 head_neck .a 2394 to 2673 12 to 291       280/291
(96 %)
6 diff
(98.0 %id)
CB162409 Liver .a 2437 to 3026 590 to 1   tiling clone, Submitted on the opposite strand 590/590
(100 %)
0 diff
(100 %id)
CF146832 CNCAP(3)T-225 cell line, Prostate .a 2621 to 3328 1 to 709       709/709
(100 %)
4 diff
(99.5 %id)
TI_154179358   .a 2627 to 3486 69 to 927   tiling clone,   859/863
(99 %)
15 diff
(98.3 %id)
BQ711719 Spleen .a 2950 to 3489 268 to 825       558/994
(56 %)
6 diff
(99.4 %id)
AA102077   .a 3028 to 3423 1 to 395       395/395
(100 %)
2 diff
(99.5 %id)
AW855484 colon .a 3181 to 3790 22 to 638       617/638
(96 %)
6 diff
(99.1 %id)
TI_154127713   .a 3193 to 4016 896 to 93   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 804/985
(81 %)
31 diff
(96.9 %id)
TI_154128729   .a 3303 to 4016 808 to 95   tiling clone, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 714/715
(99 %)
1 diff
(99.9 %id)
CA417679 Chondrosarcoma Cell line .a 3323 to 4016 712 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 694/694
(100 %)
1 diff
(99.9 %id)
BM713505 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3350 to 3673 1 to 324   fully sequenced, Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 324/324
(100 %)
1 diff
(99.7 %id)
BM727870 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3350 to 4022 1 to 672   fully sequenced, Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 672/672
(100 %)
7 diff
(99.0 %id)
BU617805 cell lines, Chondrosarcoma .a 3359 to 4016 676 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 658/658
(100 %)
1 diff
(99.9 %id)
TI_149289354   .a 3380 to 4016 725 to 91   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 635/637
(99 %)
6 diff
(99.1 %id)
BQ016935 lung, Lung Focal Fibrosis .a 3415 to 4022 620 to 13       608/620
(98 %)
0 diff
(100 %id)
CA417338 Chondrosarcoma Cell line .a 3428 to 4016 605 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 587/587
(100 %)
2 diff
(99.7 %id)
BM970916 lung .a 3430 to 4016 607 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 589/589
(100 %)
2 diff
(99.7 %id)
AW772560 normal epithelium, thyroid .a 3468 to 3681 9 to 222     Submitted on the opposite strand 214/222
(96 %)
6 diff
(97.3 %id)
DB347748 ovary, tumor tissue .a 3543 to 4016 475 to 1       475/482
(98 %)
2 diff
(99.6 %id)
AI766898 2 pooled tumors (clear cell type), Kidney .a 3618 to 4017 402 to 3   tiling clone,   400/402
(99 %)
0 diff
(100 %id)
BU739535 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3643 to 4016 392 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 374/374
(100 %)
0 diff
(100 %id)
AI832075 colon, colon tumor, RER+ .a 3658 to 4016 360 to 1       360/360
(100 %)
5 diff
(98.7 %id)
BQ652908 hepatocellular carcinoma, cell line, Liver .a 3668 to 4016 13 to 361   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 349/361
(96 %)
6 diff
(98.4 %id)
AA194820 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3670 to 4015 345 to 1       345/345
(100 %)
2 diff
(99.5 %id)
BU741548 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3671 to 4016 363 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 345/345
(100 %)
0 diff
(100 %id)
NM_006602.2   .b 1 to 2455 1 to 2455 exact RefSeq, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 2455/2455
(100 %)
0 diff
(100 %id)
AB012124   .b 140 to 2455 1 to 2316   tiling clone,   2316/2316
(100 %)
1 diff
(100.0 %id)
AF070992   .b 170 to 2455 9 to 2294   tiling clone, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 2286/2294
(99 %)
12 diff
(99.5 %id)
DB506309 hypothalamus .b 559 to 1034 1 to 476       476/476
(100 %)
0 diff
(100 %id)
CA394171 eye, RPE/choroid .b 845 to 1461 1 to 617       617/617
(100 %)
2 diff
(99.7 %id)
DA267875 caudate nucleus .b 858 to 1383 2 to 527   capped   526/526
(100 %)
2 diff
(99.7 %id)
CU444170 epidermis .b 867 to 1485 635 to 17     Submitted on the opposite strand 619/635
(97 %)
2 diff
(99.7 %id)
CU444683 epidermis .b 926 to 1485 576 to 17     Submitted on the opposite strand 560/576
(97 %)
1 diff
(99.9 %id)
BG696677 skin .b 949 to 1649 1 to 697       697/697
(100 %)
8 diff
(98.9 %id)
EC515661 Prostate .b 959 to 1057 1 to 99       99/101
(98 %)
1 diff
(99.1 %id)
BF573735 melanotic melanoma, high MDR, skin .b 976 to 1596 1 to 623       626/1068
(58 %)
28 diff
(97.4 %id)
BG167828 hypernephroma, cell line, Kidney .b 977 to 1672 1 to 685       685/922
(74 %)
28 diff
(97.0 %id)
AW958759   .b 997 to 1605 9 to 614       606/614
(98 %)
23 diff
(96.3 %id)
AW958767   .b 997 to 1609 9 to 619       611/620
(98 %)
19 diff
(97.0 %id)
AA383475 testis .b 1000 to 1312 13 to 325       313/325
(96 %)
6 diff
(98.2 %id)
BQ428510 leiomyosarcoma, uterus .b 1012 to 1879 1 to 869       869/869
(100 %)
3 diff
(99.7 %id)
BE548486 cervical carcinoma cell line, cervix .b 1051 to 1851 1 to 806       806/884
(91 %)
30 diff
(96.7 %id)
CU446532 epidermis .b 1054 to 1744 707 to 17     Submitted on the opposite strand 691/707
(97 %)
2 diff
(99.8 %id)
AA127107 colon, tumor .b 1172 to 1603 1 to 437       437/437
(100 %)
12 diff
(97.3 %id)
CN398633 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1216 to 1994 1 to 779       779/779
(100 %)
4 diff
(99.5 %id)
BU568963 testis .b 1240 to 1830 1 to 595   AAA   595/783
(75 %)
19 diff
(97.6 %id)
N80407 multiple sclerosis lesions .b 1324 to 1783 1 to 460       460/462
(99 %)
11 diff
(97.7 %id)
CR621094 Neuroblastoma Cot 50-normalized .b 1337 to 2372 1 to 1036       1036/1036
(100 %)
0 diff
(100 %id)
AL528839 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 1337 to 2372 1 to 1028   fully sequenced,   1028/1028
(100 %)
13 diff
(98.8 %id)
AL528838 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 1481 to 2345 861 to 1   fully sequenced,   861/861
(100 %)
21 diff
(97.6 %id)
AA126885 colon, tumor .b 2022 to 2456 441 to 2   tiling clone,   440/443
(99 %)
0 diff
(100 %id)
N67985 multiple sclerosis lesions .b 2065 to 2372 309 to 1       309/309
(100 %)
1 diff
(99.7 %id)
BC065520 Lymph, lymphoma .c 1 to 2782 1 to 2782 exact tiling clone, available from MGC, AAA   2782/2782
(100 %)
4 diff
(99.9 %id)
CU456928 epidermis .c 1486 to 2031 1 to 546       546/555
(98 %)
6 diff
(99.0 %id)
DA728099   .c 1511 to 1992 2 to 483   capped   482/484
(99 %)
4 diff
(99.2 %id)
BF312417 brain, neuroblastoma .c 1582 to 2288 1 to 695       695/982
(70 %)
23 diff
(97.7 %id)
BE537364 cervix .c 1851 to 2535 32 to 717       686/721
(95 %)
36 diff
(95.1 %id)
BF807743 colon_ins .c 2143 to 2601 460 to 1     Submitted on the opposite strand 460/460
(100 %)
3 diff
(99.4 %id)
BU632218 cell lines, Chondrosarcoma .c 2168 to 2782 632 to 19   tiling clone, AAA   614/614
(100 %)
1 diff
(99.9 %id)
BQ182876 Knee, Osteoarthritic Cartilage .c 2182 to 2782 618 to 19   AAA   600/600
(100 %)
9 diff
(98.5 %id)
BF765214 colon_est .c 2201 to 2605 405 to 1     Submitted on the opposite strand 405/405
(100 %)
2 diff
(99.6 %id)
BE825670 lung_normal .c 2229 to 2599 376 to 8       369/376
(98 %)
0 diff
(100 %id)
BE825678 lung_normal .c 2247 to 2603 364 to 8       357/364
(98 %)
0 diff
(100 %id)
AI678738 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2357 to 2502 146 to 1       146/146
(100 %)
0 diff
(100 %id)
AI632897 carcinoid, lung .c 2426 to 2753 1 to 328     Submitted on the opposite strand 328/328
(100 %)
6 diff
(98.2 %id)
N62121 multiple sclerosis lesions .c 2430 to 2783 355 to 1       355/367
(96 %)
1 diff
(99.8 %id)
AI377445   .c 2473 to 2786 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AW193036 adenocarcinoma, Pancreas .c 2517 to 2783 267 to 1       267/267
(100 %)
0 diff
(100 %id)
CA397741 eye, RPE/choroid .c 2584 to 2782 12 to 209   AAA   198/209
(94 %)
6 diff
(97.2 %id)
DB456152.
matches multiple genes
testis .d-u 1 to 466 1 to 473   tiling clone, also hits gene COL9A3 473/473
(100 %)
13 diff
(97.3 %id)
DB505138.
matches multiple genes
hypothalamus .d-u 17 to 472 1 to 463     also hits gene COL9A3 463/463
(100 %)
7 diff
(98.5 %id)
DB461935.
matches multiple genes
testis .d-u 38 to 396 1 to 359     also hits gene COL9A3 359/359
(100 %)
6 diff
(98.4 %id)
DB502719 hypothalamus .d-u 46 to 496 1 to 457       457/457
(100 %)
16 diff
(96.5 %id)
CD171652 testis .d-u 56 to 609 1 to 556       556/845
(65 %)
7 diff
(99.2 %id)
DR763346 embryonic stem .d-u 57 to 647 1 to 591   tiling clone,   591/591
(100 %)
1 diff
(99.9 %id)
BM806795 melanotic melanoma, skin .d-u 58 to 602 1 to 551       551/1308
(42 %)
6 diff
(99.6 %id)
DN996993 breast cancer, Mammary gland (cancer tissue) .d-u 96 to 583 1 to 488       488/488
(100 %)
2 diff
(99.6 %id)
BU553978 ovary, teratocarcinoma, cell line .d-u 119 to 648 37 to 566       530/570
(92 %)
6 diff
(99.0 %id)
BU846146 ovary, teratocarcinoma, cell line .d-u 125 to 638 1 to 516       516/1003
(51 %)
21 diff
(98.0 %id)
BU846289 ovary, teratocarcinoma, cell line .d-u 125 to 623 1 to 503       503/1158
(43 %)
16 diff
(98.7 %id)
BU556620 ovary, teratocarcinoma, cell line .d-u 125 to 648 1 to 525       525/529
(99 %)
2 diff
(99.7 %id)
BU855672 ovary, teratocarcinoma, cell line .d-u 125 to 644 1 to 521       521/982
(53 %)
8 diff
(99.2 %id)
DB454797.
matches multiple genes
testis .d-u 133 to 598 1 to 466     also hits gene COL9A3 466/466
(100 %)
5 diff
(99.0 %id)
CD300363 testis .d-u 148 to 656 1 to 509       509/999
(50 %)
6 diff
(99.4 %id)
BQ049528 lymph, lymphoma, cell line .d-u 151 to 648 1 to 498   available from MGC,   498/933
(53 %)
1 diff
(99.9 %id)
BU161481 melanotic melanoma, skin .d-u 240 to 628 1 to 389       389/1175
(33 %)
10 diff
(99.2 %id)
BQ672100 epidermoid carcinoma, cell line, salivary gland .d-u 286 to 646 1 to 361       361/1072
(33 %)
1 diff
(100.0 %id)
AL135060 melanoma (MeWo cell line) .d-u 377 to 892 1 to 516   tiling clone,   516/517
(99 %)
3 diff
(99.5 %id)
BU075610 insulinoma, Pancreas .e 626 to 916 148 to 438 T38S V50A E51G Y52R T53S ... tiling clone, Submitted on the opposite strand 438/438
(100 %)
6 diff
(98.7 %id)
AJ271337   .f 1 to 1419 1 to 1419 exact tiling clone,   1419/1458
(97 %)
7 diff
(99.6 %id)
AW571445 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f 205 to 564 363 to 1   tiling clone,   363/363
(100 %)
4 diff
(98.9 %id)
TI_149276649   .f 1284 to 2164 953 to 84   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 870/885
(98 %)
27 diff
(97.0 %id)
AA450347   .f 1332 to 1566 1 to 235       235/235
(100 %)
2 diff
(99.2 %id)
H56596 pineal gland .f 1350 to 1801 1 to 455   fully sequenced,   455/455
(100 %)
10 diff
(97.9 %id)
BP203949 coronary artery .f 1357 to 1940 1 to 584       584/584
(100 %)
8 diff
(98.7 %id)
BQ637205 eye, retina .f 1370 to 1919 1 to 550       550/550
(100 %)
0 diff
(100 %id)
BU609016 Human Lung Epithelial cells, lung .f 1385 to 2080 710 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 692/692
(100 %)
3 diff
(99.6 %id)
R31318 placenta .f 1404 to 1703 1 to 300       300/300
(100 %)
2 diff
(99.4 %id)
BM769730 stomach .f 1408 to 2066 1 to 659   tiling clone,   659/663
(99 %)
1 diff
(99.9 %id)
BP430748   .f 1423 to 1797 1 to 375       375/375
(100 %)
3 diff
(99.2 %id)
CA431192 cell lines, Enchondroma .f 1492 to 2164 691 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 673/673
(100 %)
0 diff
(100 %id)
AA398861   .f 1493 to 1950 1 to 458   fully sequenced,   458/458
(100 %)
0 diff
(100 %id)
BU677324 lung, Primary Lung Epithelial Cells .f 1494 to 2164 689 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 671/671
(100 %)
1 diff
(99.9 %id)
CA429209 Cell Line, Chondrosarcoma .f 1529 to 2266 756 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 738/738
(100 %)
0 diff
(100 %id)
BF509848   .f 1566 to 2080 528 to 18   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 511/511
(100 %)
6 diff
(98.9 %id)
BX282585 pooled germ cell tumors .f 1586 to 2083 1 to 498       498/498
(100 %)
0 diff
(100 %id)
AA715092 germinal center B cell .f 1604 to 2081 482 to 9       474/482
(98 %)
0 diff
(100 %id)
AI338869 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1604 to 2020 488 to 75   AAA   414/478
(86 %)
0 diff
(100 %id)
AI743850 pooled .f 1605 to 2161 558 to 1       558/558
(100 %)
14 diff
(97.5 %id)
AA724538 pooled .f 1608 to 2080 470 to 2       469/470
(99 %)
0 diff
(100 %id)
AL040903 testis .f 1623 to 2156 534 to 1       534/534
(100 %)
0 diff
(100 %id)
CA419503 Bone, Human Chondrosarcoma Cell Line .f 1625 to 2266 661 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 643/643
(100 %)
1 diff
(99.9 %id)
AI671217 pooled germ cell tumors .f 1658 to 2171 514 to 1       514/515
(99 %)
5 diff
(99.1 %id)
AI741433 pooled .f 1658 to 2163 507 to 1       507/507
(100 %)
8 diff
(98.5 %id)
BE463847 pooled germ cell tumors .f 1710 to 2164 456 to 1       456/456
(100 %)
9 diff
(98.1 %id)
AI018483   .f 1714 to 2165 455 to 4       452/455
(99 %)
0 diff
(100 %id)
AI669101 Prostate .f 1714 to 2164 451 to 1       451/454
(99 %)
6 diff
(98.7 %id)
AI469907 pooled .f 1716 to 2165 455 to 6       450/455
(98 %)
0 diff
(100 %id)
AI222718 adenocarcinoma, colon .f 1717 to 2164 458 to 11   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
AI073867 pooled .f 1724 to 2165 449 to 7       443/449
(98 %)
0 diff
(100 %id)
AW469797 pooled .f 1738 to 2162 431 to 7       425/431
(98 %)
0 diff
(100 %id)
TI_57196489   .f 1744 to 2164 35 to 455   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 421/455
(92 %)
12 diff
(97.4 %id)
AA812951   .f 1745 to 2165 424 to 3       422/424
(99 %)
0 diff
(100 %id)
N34354 melanocyte .f 1749 to 2164 417 to 1       417/422
(98 %)
3 diff
(99.3 %id)
BI819016 pooled brain, lung, testis .f 1749 to 2164 1 to 416   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 416/416
(100 %)
0 diff
(100 %id)
AI861857 Kidney .f 1766 to 2165 404 to 5       400/404
(99 %)
0 diff
(100 %id)
AW299936 Kidney .f 1766 to 2165 404 to 5       400/404
(99 %)
0 diff
(100 %id)
AW299678 Kidney .f 1767 to 2165 404 to 6       399/404
(98 %)
0 diff
(100 %id)
H56597 pineal gland .f 1771 to 2148 389 to 1   fully sequenced,   389/389
(100 %)
11 diff
(97.2 %id)
AA872091 pooled germ cell tumors .f 1780 to 2164 385 to 1       385/385
(100 %)
0 diff
(100 %id)
AA682237   .f 1781 to 2165 387 to 3       385/387
(99 %)
0 diff
(100 %id)
AW104557 pooled .f 1783 to 2165 385 to 3       383/385
(99 %)
0 diff
(100 %id)
AI285255 adenocarcinoma, colon .f 1791 to 2164 374 to 1       374/374
(100 %)
0 diff
(100 %id)
AI743464 pooled .f 1803 to 2171 381 to 11   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 371/371
(100 %)
11 diff
(97.1 %id)
AI208130   .f 1805 to 2165 365 to 5       361/365
(98 %)
0 diff
(100 %id)
AI870834 anaplastic oligodendroglioma, brain .f 1811 to 2247 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AI208505   .f 1822 to 2165 350 to 6       345/351
(98 %)
0 diff
(100 %id)
AI285243 adenocarcinoma, colon .f 1824 to 2165 348 to 7       342/348
(98 %)
0 diff
(100 %id)
AI018703   .f 1829 to 2165 340 to 3       338/340
(99 %)
0 diff
(100 %id)
H84355 melanocyte .f 1834 to 2153 325 to 1       325/327
(99 %)
5 diff
(98.5 %id)
AW451768   .f 1850 to 2164 332 to 18   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 315/315
(100 %)
0 diff
(100 %id)
AI655259 pooled germ cell tumors .f 1861 to 2164 334 to 31   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 304/304
(100 %)
10 diff
(96.8 %id)
AI364770 ovary, tumor, 5 pooled (see description) .f 1871 to 2164 294 to 1       294/294
(100 %)
0 diff
(100 %id)
AW337242 adenocarcinoma, Pancreas .f 1871 to 2165 295 to 1       295/295
(100 %)
0 diff
(100 %id)
AA435861   .f 1920 to 2168 249 to 1   fully sequenced,   249/249
(100 %)
3 diff
(98.8 %id)
AA599653   .f 1970 to 2165 198 to 3       196/198
(98 %)
0 diff
(100 %id)
AI565302 pooled .f 1973 to 2163 192 to 1       192/192
(100 %)
5 diff
(97.4 %id)
AI434922 lymph node, lymphoma, follicular mixed small and largecell .f 2057 to 2164 137 to 30   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 108/118
(91 %)
2 diff
(98.4 %id)
AA017620 eye, retina .f 2184 to 2435 1 to 251   tiling clone,   251/255
(98 %)
7 diff
(97.3 %id)
DB564885.
matches multiple genes
hypothalamus .f 2188 to 2651 463 to 1   tiling clone, also hits gene COL9A3 463/463
(100 %)
7 diff
(98.5 %id)
DB565800.
matches multiple genes
hypothalamus .f 2188 to 2649 462 to 1   tiling clone, also hits gene COL9A3 462/462
(100 %)
2 diff
(99.6 %id)
DV462379 cochlea, ear .f 2283 to 2515 1 to 233       233/233
(100 %)
9 diff
(96.2 %id)
DV459476 cochlea, ear .f 2283 to 2396 1 to 114       114/114
(100 %)
1 diff
(99.2 %id)
DV459450 cochlea, ear .f 2284 to 2417 1 to 134       134/134
(100 %)
2 diff
(98.6 %id)
DV461166 cochlea, ear .f 2284 to 2413 1 to 130       130/130
(100 %)
2 diff
(98.5 %id)
DV462195 cochlea, ear .f 2284 to 2418 1 to 135       135/135
(100 %)
3 diff
(97.8 %id)
DV459398 cochlea, ear .f 2284 to 2425 1 to 142       142/142
(100 %)
4 diff
(97.2 %id)
DV462357 cochlea, ear .f 2285 to 2413 1 to 129       129/129
(100 %)
0 diff
(100 %id)
DV461164 cochlea, ear .f 2285 to 2391 1 to 107       107/123
(86 %)
3 diff
(97.6 %id)
DV462610 cochlea, ear .f 2285 to 2455 1 to 171       171/173
(98 %)
1 diff
(99.5 %id)
DV461058 cochlea, ear .f 2285 to 2430 1 to 146       146/146
(100 %)
0 diff
(100 %id)
DV460750 cochlea, ear .f 2285 to 2424 1 to 141       141/159
(88 %)
8 diff
(95.0 %id)
DV459016 cochlea, ear .f 2287 to 2413 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606475 head_neck .f 2465 to 2609 1 to 145       145/145
(100 %)
9 diff
(93.8 %id)
AW580152 head_neck .f 2466 to 2626 1 to 162       162/167
(97 %)
6 diff
(96.5 %id)
AW580147 head_neck .f 2468 to 2626 1 to 159       159/166
(95 %)
12 diff
(92.8 %id)
AW580084 head_neck .f 2469 to 2609 1 to 141       141/141
(100 %)
9 diff
(93.7 %id)
AW580101 head_neck .f 2469 to 2626 1 to 156       156/156
(100 %)
11 diff
(93.0 %id)
AW580164 head_neck .f 2469 to 2621 1 to 153       153/161
(95 %)
7 diff
(95.7 %id)
AW606459 head_neck .f 2469 to 2609 1 to 140       140/140
(100 %)
5 diff
(96.5 %id)
AW606495 head_neck .f 2469 to 2630 1 to 161       161/164
(98 %)
13 diff
(92.1 %id)
BQ356504 head_neck .f 2469 to 2609 8 to 153       146/153
(95 %)
18 diff
(88.3 %id)
AW384248 head_neck .f 2470 to 2609 1 to 139       139/139
(100 %)
6 diff
(95.7 %id)
BE157878 head_neck .f 2470 to 2609 1 to 139       139/139
(100 %)
7 diff
(95.0 %id)
BQ349007 head_neck .f 2470 to 2609 1 to 139       139/139
(100 %)
11 diff
(92.1 %id)
BQ349042 head_neck .f 2470 to 2615 1 to 143       143/143
(100 %)
12 diff
(91.7 %id)
BE157876 head_neck .f 2471 to 2606 1 to 136       136/139
(97 %)
9 diff
(93.6 %id)
BE157892 head_neck .f 2471 to 2609 1 to 137       137/137
(100 %)
6 diff
(95.7 %id)
AW384147 head_neck .f 2472 to 2609 10 to 146       137/146
(93 %)
6 diff
(95.9 %id)
AW384249 head_neck .f 2472 to 2612 11 to 150       140/150
(93 %)
8 diff
(94.7 %id)
AW580094 head_neck .f 2472 to 2609 11 to 149       139/149
(93 %)
6 diff
(96.0 %id)
AW580105 head_neck .f 2472 to 2630 11 to 170       160/177
(90 %)
9 diff
(95.0 %id)
AW580144 head_neck .f 2472 to 2609 22 to 160       139/160
(86 %)
6 diff
(96.3 %id)
AW580146 head_neck .f 2472 to 2630 11 to 170       160/177
(90 %)
9 diff
(95.0 %id)
AW580150 head_neck .f 2472 to 2600 9 to 136       128/136
(94 %)
6 diff
(95.6 %id)
AW580159 head_neck .f 2472 to 2604 11 to 142       132/142
(92 %)
6 diff
(95.8 %id)
AW580161 head_neck .f 2472 to 2614 12 to 153       142/153
(92 %)
6 diff
(96.1 %id)
AW580165 head_neck .f 2472 to 2609 14 to 152       139/152
(91 %)
6 diff
(96.1 %id)
AW580169 head_neck .f 2472 to 2602 1 to 131       131/131
(100 %)
5 diff
(96.2 %id)
AW606427 head_neck .f 2472 to 2609 6 to 141       136/141
(96 %)
6 diff
(95.8 %id)
AW606430 head_neck .f 2472 to 2609 22 to 160       139/160
(86 %)
6 diff
(96.3 %id)
AW606432 head_neck .f 2472 to 2609 6 to 140       135/140
(96 %)
6 diff
(95.8 %id)
AW606433 head_neck .f 2472 to 2605 10 to 144       135/144
(93 %)
6 diff
(95.9 %id)
AW606445 head_neck .f 2472 to 2609 11 to 146       136/146
(93 %)
6 diff
(95.9 %id)
AW606464 head_neck .f 2472 to 2609 8 to 144       137/144
(95 %)
6 diff
(95.9 %id)
BF350833 head_neck .f 2472 to 2609 14 to 153       140/153
(91 %)
6 diff
(96.1 %id)
BQ349551 head_neck .f 2472 to 2622 13 to 162       150/164
(91 %)
9 diff
(94.6 %id)
AW384247 head_neck .f 2473 to 2609 6 to 141       136/141
(96 %)
6 diff
(95.8 %id)
AW580143 head_neck .f 2473 to 2609 10 to 145       136/145
(93 %)
6 diff
(95.9 %id)
AW606429 head_neck .f 2473 to 2609 10 to 145       136/145
(93 %)
6 diff
(95.9 %id)
AW606450 head_neck .f 2473 to 2609 12 to 147       136/147
(92 %)
6 diff
(96.0 %id)
BE157882 head_neck .f 2473 to 2609 15 to 150       136/150
(90 %)
6 diff
(96.0 %id)
BE157886 head_neck .f 2473 to 2609 13 to 148       136/148
(91 %)
6 diff
(96.0 %id)
BE157891 head_neck .f 2473 to 2609 11 to 144       134/144
(93 %)
6 diff
(95.9 %id)
BQ348929 head_neck .f 2473 to 2629 12 to 169       158/196
(80 %)
10 diff
(94.9 %id)
AW580106 head_neck .f 2474 to 2602 12 to 140       129/140
(92 %)
9 diff
(93.6 %id)
BF350846 head_neck .f 2474 to 2609 13 to 147       135/147
(91 %)
6 diff
(96.0 %id)
AW580108 head_neck .f 2475 to 2601 1 to 128       128/128
(100 %)
6 diff
(95.4 %id)
AW580075 head_neck .f 2476 to 2609 11 to 142       132/142
(92 %)
6 diff
(95.8 %id)
BE157885 head_neck .f 2476 to 2618 1 to 143       143/143
(100 %)
3 diff
(98.0 %id)
AW580068 head_neck .f 2477 to 2609 14 to 146       133/146
(91 %)
6 diff
(95.9 %id)
AW580099 head_neck .f 2477 to 2603 1 to 126       126/126
(100 %)
3 diff
(97.7 %id)
AW606454 head_neck .f 2477 to 2609 1 to 133       133/133
(100 %)
2 diff
(98.5 %id)
BE157889 head_neck .f 2477 to 2609 18 to 150       133/150
(88 %)
6 diff
(96.0 %id)
AW606443 head_neck .f 2478 to 2609 25 to 155       131/155
(84 %)
6 diff
(96.2 %id)
AW606452 head_neck .f 2478 to 2609 16 to 146       131/146
(89 %)
6 diff
(95.9 %id)
AW606488 head_neck .f 2478 to 2590 8 to 119       112/119
(94 %)
8 diff
(93.3 %id)
BE157884 head_neck .f 2478 to 2609 13 to 143       131/143
(91 %)
6 diff
(95.9 %id)
BF350831 head_neck .f 2478 to 2609 16 to 146       131/146
(89 %)
6 diff
(95.9 %id)
AW384240 head_neck .f 2479 to 2606 18 to 144       127/145
(87 %)
6 diff
(95.9 %id)
AW384243 head_neck .f 2479 to 2609 16 to 147       132/147
(89 %)
6 diff
(96.0 %id)
AW580067 head_neck .f 2479 to 2609 14 to 144       131/144
(90 %)
6 diff
(95.9 %id)
AW580071 head_neck .f 2479 to 2609 17 to 147       131/147
(89 %)
6 diff
(96.0 %id)
AW580082 head_neck .f 2479 to 2609 10 to 138       129/138
(93 %)
6 diff
(95.7 %id)
AW580085 head_neck .f 2479 to 2606 9 to 135       127/135
(94 %)
6 diff
(95.6 %id)
AW580096 head_neck .f 2479 to 2609 14 to 142       129/142
(90 %)
6 diff
(95.8 %id)
AW580100 head_neck .f 2479 to 2609 1 to 131       131/131
(100 %)
3 diff
(97.8 %id)
AW580103 head_neck .f 2479 to 2613 17 to 151       135/151
(89 %)
6 diff
(96.1 %id)
AW580140 head_neck .f 2479 to 2609 1 to 131       131/131
(100 %)
1 diff
(99.3 %id)
AW580157 head_neck .f 2479 to 2609 14 to 143       130/143
(90 %)
6 diff
(95.9 %id)
AW606431 head_neck .f 2479 to 2604 15 to 140       126/140
(90 %)
6 diff
(95.8 %id)
BF350826 head_neck .f 2479 to 2609 16 to 148       133/148
(89 %)
6 diff
(96.0 %id)
BF350834 head_neck .f 2479 to 2609 1 to 131       131/131
(100 %)
2 diff
(98.5 %id)
AW384246 head_neck .f 2481 to 2609 1 to 129       129/129
(100 %)
1 diff
(99.3 %id)
AW606451 head_neck .f 2481 to 2609 1 to 129       129/129
(100 %)
3 diff
(97.7 %id)
AW606469 head_neck .f 2481 to 2609 9 to 138       130/138
(94 %)
6 diff
(95.7 %id)
BF350825 head_neck .f 2481 to 2609 19 to 147       129/147
(87 %)
6 diff
(96.0 %id)
AW384144 head_neck .f 2482 to 2609 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
AW384146 head_neck .f 2482 to 2609 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
AW580122 head_neck .f 2482 to 2609 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
AW580162 head_neck .f 2482 to 2623 1 to 141       141/149
(94 %)
5 diff
(96.7 %id)
AW606434 head_neck .f 2482 to 2609 1 to 127       127/127
(100 %)
4 diff
(96.9 %id)
BF350845 head_neck .f 2482 to 2609 1 to 127       127/127
(100 %)
2 diff
(98.5 %id)
AW384143 head_neck .f 2483 to 2609 1 to 126       126/126
(100 %)
1 diff
(99.3 %id)
AW580077 head_neck .f 2483 to 2609 18 to 139       122/139
(87 %)
6 diff
(95.7 %id)
AW580079 head_neck .f 2483 to 2609 20 to 143       124/143
(86 %)
6 diff
(95.9 %id)
AW580125 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW580128 head_neck .f 2483 to 2626 1 to 144       144/154
(93 %)
3 diff
(98.1 %id)
AW580129 head_neck .f 2483 to 2611 18 to 145       128/145
(88 %)
6 diff
(95.9 %id)
AW580138 head_neck .f 2483 to 2626 22 to 164       143/170
(84 %)
7 diff
(95.9 %id)
AW580139 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW580141 head_neck .f 2483 to 2611 18 to 145       128/145
(88 %)
6 diff
(95.9 %id)
AW580160 head_neck .f 2483 to 2602 19 to 141       123/141
(87 %)
6 diff
(95.8 %id)
AW580163 head_neck .f 2483 to 2604 1 to 122       122/122
(100 %)
3 diff
(97.6 %id)
AW580168 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
2 diff
(98.5 %id)
AW606442 head_neck .f 2483 to 2609 1 to 128       128/128
(100 %)
3 diff
(97.7 %id)
AW606444 head_neck .f 2483 to 2609 1 to 126       126/126
(100 %)
1 diff
(99.3 %id)
AW606447 head_neck .f 2483 to 2609 1 to 126       126/126
(100 %)
2 diff
(98.5 %id)
AW606448 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606455 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606456 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606461 head_neck .f 2483 to 2621 1 to 138       138/156
(88 %)
4 diff
(97.5 %id)
AW606462 head_neck .f 2483 to 2626 1 to 144       144/149
(96 %)
3 diff
(98.0 %id)
AW606465 head_neck .f 2483 to 2609 1 to 126       126/126
(100 %)
2 diff
(98.5 %id)
AW606466 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
1 diff
(99.3 %id)
AW606468 head_neck .f 2483 to 2626 1 to 143       143/148
(96 %)
5 diff
(96.7 %id)
AW606481 head_neck .f 2483 to 2612 1 to 130       130/130
(100 %)
0 diff
(100 %id)
AW606482 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606484 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
0 diff
(100 %id)
AW606486 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
2 diff
(98.5 %id)
AW606493 head_neck .f 2483 to 2609 1 to 126       126/126
(100 %)
1 diff
(99.3 %id)
AW606494 head_neck .f 2483 to 2609 1 to 128       128/128
(100 %)
2 diff
(98.5 %id)
AW606496 head_neck .f 2483 to 2609 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
BE157880 head_neck .f 2483 to 2626 15 to 157       143/162
(88 %)
6 diff
(96.3 %id)
BE157883 head_neck .f 2483 to 2612 23 to 150       128/150
(85 %)
6 diff
(96.0 %id)
BE157894 head_neck .f 2483 to 2609 12 to 136       125/136
(91 %)
6 diff
(95.6 %id)
BE157896 head_neck .f 2483 to 2609 10 to 133       124/133
(93 %)
6 diff
(95.5 %id)
BF350823 head_neck .f 2483 to 2626 1 to 142       142/144
(98 %)
8 diff
(94.5 %id)
BF350829 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
3 diff
(97.7 %id)
BF350839 head_neck .f 2483 to 2609 1 to 127       127/127
(100 %)
2 diff
(98.5 %id)
AW580091 head_neck .f 2484 to 2609 15 to 141       127/141
(90 %)
6 diff
(95.8 %id)
BQ718487 sympathetic trunk .g 1 to 912 1 to 918 R239P R240K L241P L243A T244D ... tiling clone,   918/925
(99 %)
23 diff
(97.6 %id)
BQ877065 epidermoid carcinoma, cell line, lung .h 1 to 810 9 to 826 N43K tiling clone,   818/933
(87 %)
19 diff
(98.0 %id)
BQ232305 embryonal carcinoma, cell line, testis .h 227 to 942 1 to 724   tiling clone,   724/951
(76 %)
13 diff
(98.7 %id)
DA390300 thalamus .i 1 to 574 2 to 576   tiling clone, capped   575/575
(100 %)
2 diff
(99.7 %id)
AW886081 ovary .i 120 to 628 1 to 510   tiling clone,   510/510
(100 %)
7 diff
(98.7 %id)
DA806434 brain .i 285 to 851 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BE018436 cervix .i 1096 to 1313 1 to 218   tiling clone,   218/218
(100 %)
1 diff
(99.6 %id)
DB311776 thalamus .i 1808 to 2338 532 to 1   tiling clone,   532/532
(100 %)
12 diff
(97.8 %id)
BE302044 cervix .i 2073 to 2340 268 to 1   tiling clone,   268/268
(100 %)
0 diff
(100 %id)
AA346677 heart .j-u 1 to 223 64 to 287   tiling clone,   224/289
(77 %)
8 diff
(97.3 %id)
AW956715   .j-u 1 to 470 63 to 534 E95Q tiling clone, AAA   472/534
(88 %)
4 diff
(99.3 %id)
AI884611 anaplastic oligodendroglioma, brain .j-u 74 to 601 528 to 1   tiling clone,   528/528
(100 %)
0 diff
(100 %id)
N42853 melanocyte .j-u 127 to 605 1 to 483   fully sequenced,   483/483
(100 %)
6 diff
(98.8 %id)
AI362987 anaplastic oligodendroglioma, brain .j-u 208 to 601 394 to 1       394/396
(99 %)
0 diff
(100 %id)
N34445 melanocyte .j-u 455 to 609 160 to 1   fully sequenced,   160/160
(100 %)
0 diff
(100 %id)
BX280721 melanotic melanoma, skin .k 1 to 460 1 to 460 N29D     460/460
(100 %)
2 diff
(99.6 %id)
BM458903 melanotic melanoma, skin .k 1 to 937 1 to 945 N29D tiling clone,   945/989
(95 %)
15 diff
(98.5 %id)
DA302441 hippocampus .l-u 1 to 589 2 to 591   tiling clone, capped   590/590
(100 %)
1 diff
(99.9 %id)
AL713146 human skeletal muscle .l-u 440 to 962 1 to 523   tiling clone,   523/523
(100 %)
1 diff
(99.9 %id)
BE299431 muscle, rhabdomyosarcoma .l-u 877 to 1533 1 to 653 R27T D29G A30C R31Q C32V ... tiling clone,   653/656
(99 %)
13 diff
(98.1 %id)
BF344050 brain, glioblastoma with EGFR amplification .m-u 1 to 657 1 to 657   tiling clone,   657/862
(76 %)
14 diff
(98.4 %id)
TI_154188304   .m-u 139 to 1059 119 to 1025 G46X P59X tiling clone,   907/931
(97 %)
27 diff
(97.1 %id)
CU445911 epidermis .n-u 1 to 372 22 to 395 exact tiling clone,   374/396
(94 %)
8 diff
(98.0 %id)
AA356516   .n-u 28 to 250 1 to 225       225/226
(99 %)
4 diff
(98.3 %id)
CU445281 epidermis .n-u 92 to 366 26 to 301 P56L tiling clone,   276/311
(88 %)
5 diff
(98.4 %id)
AW371237 breast .n-u 453 to 694 11 to 251   tiling clone,   241/253
(95 %)
8 diff
(96.9 %id)
BP430331   .o 1 to 376 1 to 376 exact tiling clone,   376/376
(100 %)
4 diff
(99.0 %id)
AW606460 head_neck Gene TCFL5, variant not shown         This clone was ignored    
DB311857 thalamus Gene TCFL5, variant not shown         This clone was ignored    
DA393264 thalamus Gene TCFL5, variant not shown       capped This clone was ignored    
N49233 multiple sclerosis lesions Gene TCFL5, variant not shown         Suspected internal deletion, this clone was ignored    
AI002032 breast Gene TCFL5, variant not shown         Submitted on the opposite strand    
BE891623 melanotic melanoma, skin Gene TCFL5, variant not shown         This clone was ignored    
BC015689 Colon, adenocarcinoma Gene TCFL5, variant not shown       available from MGC, AAA This clone was ignored    
BU177574 melanotic melanoma, skin Gene TCFL5, variant not shown         This clone was ignored    
BQ709994 Spleen Gene TCFL5, variant not shown         This clone was ignored    
TI_154131835   Gene TCFL5, variant not shown       AAA This clone was ignored    
CA418278 Bone, Human Chondrosarcoma Cell Line Gene TCFL5, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m-u, .n-u, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI